RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780177|ref|YP_003064590.1| lipoyltransferase [Candidatus
Liberibacter asiaticus str. psy62]
(257 letters)
>gnl|CDD|184635 PRK14341, PRK14341, lipoate-protein ligase B; Provisional.
Length = 213
Score = 351 bits (904), Expect = 8e-98
Identities = 127/217 (58%), Positives = 162/217 (74%), Gaps = 5/217 (2%)
Query: 20 SPIRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDDLLSP 79
P+ W + D V Y E+ ME + I+ G A+ELVWLLEHPPLYT+GTSA ++DLL P
Sbjct: 2 PPVEWRISDGLVPYPEALAFMEARVAAIAAGTADELVWLLEHPPLYTAGTSAKAEDLLDP 61
Query: 80 KSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGE 139
PVY TGRGG YTYHGPGQR+ Y+ML+L +RR+D+R FVAALEE II TL I GE
Sbjct: 62 DRFPVYETGRGGQYTYHGPGQRVAYVMLDLKRRRRDVRAFVAALEEWIIATLAAFNIRGE 121
Query: 140 RREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPDLSYYTGIVP 199
RREDRVG+WV R +K E+KIAAIG+R+R+W+SFHG+S+N+ PDLS+++GIVP
Sbjct: 122 RREDRVGVWVRRPDK-----GSGAEDKIAAIGVRLRRWVSFHGISINVEPDLSHFSGIVP 176
Query: 200 CGISQHGVTSLKELGYSYSMKYIDTLIRKSFESVFGP 236
CGIS+HGVTSL +LG +M +D ++K+FE VFGP
Sbjct: 177 CGISEHGVTSLVDLGLPVTMDDVDAALKKAFEKVFGP 213
>gnl|CDD|172823 PRK14347, PRK14347, lipoate-protein ligase B; Provisional.
Length = 209
Score = 192 bits (488), Expect = 1e-49
Identities = 91/215 (42%), Positives = 139/215 (64%), Gaps = 10/215 (4%)
Query: 22 IRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDDLLSPKS 81
IR+ + + DY+ + +ME + ++ + E+V+L+EH +YT+GT+ ++LL+
Sbjct: 2 IRFITIPDFADYQVTLKLMEDYVNKVISDHEPEIVYLVEHSEVYTAGTNYKQEELLNYGD 61
Query: 82 LPVYTTGRGGGYTYHGPGQRIIYIMLNLA--KRRKDLRCFVAALEEVIIRTLKILGIVGE 139
+PV TGRGG +T+HGPGQR+IY +LNLA R KDL+ ++ LEE II +L GI
Sbjct: 62 IPVIYTGRGGKFTFHGPGQRVIYPILNLASPNRHKDLKLYIKMLEEWIINSLNYFGIKAY 121
Query: 140 RREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPDLSYYTGIVP 199
+D+VGIWV K R ++ KIAAIG+R+RKW+++HG+++NIS DLS ++GI+P
Sbjct: 122 IIKDKVGIWV----KVRKDEF----AKIAAIGVRVRKWVTYHGVAINISTDLSKFSGIIP 173
Query: 200 CGISQHGVTSLKELGYSYSMKYIDTLIRKSFESVF 234
CG+ VTSL +LG M D +I+ F +F
Sbjct: 174 CGLENSLVTSLNQLGIHVEMSEFDKIIQTEFNKIF 208
>gnl|CDD|161768 TIGR00214, lipB, lipoate-protein ligase B. Involved in lipoate
biosynthesis as the main determinant of the
lipoyl-protein ligase activity required for lipoylation
of enzymes such as alpha-ketoacid dehydrogenases.
Involved in activation and re-activation (following
denaturation) of lipoyl-protein ligases (calcium
ion-dependant process).
Length = 184
Score = 164 bits (416), Expect = 3e-41
Identities = 67/186 (36%), Positives = 109/186 (58%), Gaps = 16/186 (8%)
Query: 53 EELVWLLEHPPLYTSGTSAISDDLLSPKSLP---VYTTGRGGGYTYHGPGQRIIYIMLNL 109
+ + L+EH P+YT G + ++ LL +P V + RGG TYHGPGQ+++Y++L+L
Sbjct: 12 LDEIMLVEHYPVYTQGQAGKTEHLLFDPDIPPAEVVQSERGGQVTYHGPGQQVMYVILDL 71
Query: 110 AKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAA 169
+ + D+R V LE+ +I TL LGI GE D G+WV +K+A+
Sbjct: 72 KRFQLDVRWLVTQLEQTVIITLAELGIEGEPIADATGVWVE-------------GKKVAS 118
Query: 170 IGIRIRKWISFHGLSLNISPDLSYYTGIVPCGISQHGVTSLKELGYSYSMKYIDTLIRKS 229
+GIR+R+ +FHGL+LNI+ DLS ++ I PCG + + SL + +++ + L+ K+
Sbjct: 119 LGIRVRRGCTFHGLALNINMDLSPFSHINPCGYAGREMGSLNQFLPGATVENVAPLLIKA 178
Query: 230 FESVFG 235
F + G
Sbjct: 179 FAELLG 184
>gnl|CDD|184638 PRK14345, PRK14345, lipoate-protein ligase B; Provisional.
Length = 234
Score = 148 bits (377), Expect = 8e-37
Identities = 73/188 (38%), Positives = 104/188 (55%), Gaps = 16/188 (8%)
Query: 31 VDYEESQIIMEREI--QRISLGNAEELVWLLEHPPLYTSGTSAISDDLLSP-KSLPVYTT 87
VDY+E+ ++RE+ R++ G + + LLEHP +YT+G + P PV
Sbjct: 20 VDYQEA-WDLQRELADARVA-GEGPDTLLLLEHPAVYTAGKRTEPHER--PTDGTPVVDV 75
Query: 88 GRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGI 147
RGG T+HGPGQ + Y ++ LA+ D+ +V LEE +I LG+ R + R G+
Sbjct: 76 DRGGKITWHGPGQLVGYPIIKLAEP-LDVVDYVRRLEEALIAVCADLGLNAGRVDGRSGV 134
Query: 148 WVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPDLSYYTGIVPCGISQHGV 207
WV D KIAAIGIR+ + ++ HG +LN DL+ + IVPCGIS GV
Sbjct: 135 WVPADGGRPD-------RKIAAIGIRVSRGVTMHGFALNCDNDLAAFDAIVPCGISDAGV 187
Query: 208 TSL-KELG 214
T+L ELG
Sbjct: 188 TTLSAELG 195
>gnl|CDD|184636 PRK14342, PRK14342, lipoate-protein ligase B; Provisional.
Length = 213
Score = 146 bits (372), Expect = 4e-36
Identities = 67/181 (37%), Positives = 107/181 (59%), Gaps = 15/181 (8%)
Query: 56 VWLLEHPPLYTSGTSAISDDLLSPKSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRK- 114
+WL+EHPP++T G + + +L+P +PV + RGG TYHGPGQ ++Y++L+L KR K
Sbjct: 38 IWLVEHPPVFTQGQAGKPEHILNPGDIPVVQSDRGGQVTYHGPGQLVMYVLLDL-KRLKL 96
Query: 115 DLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRI 174
+R V A+E+ +I TL GI + D G++V D + KIA++G+RI
Sbjct: 97 GVRQLVTAIEQTVINTLAEYGIEAHAKPDAPGVYV-------DGK------KIASLGLRI 143
Query: 175 RKWISFHGLSLNISPDLSYYTGIVPCGISQHGVTSLKELGYSYSMKYIDTLIRKSFESVF 234
R+ SFHGL+LN++ DLS + I PCG + +T L +LG ++ + + ++
Sbjct: 144 RRGCSFHGLALNVNMDLSPFLRINPCGYAGLEMTQLSDLGGPATVDEVAPRLLAELLALL 203
Query: 235 G 235
G
Sbjct: 204 G 204
>gnl|CDD|172820 PRK14344, PRK14344, lipoate-protein ligase B; Provisional.
Length = 223
Score = 138 bits (349), Expect = 1e-33
Identities = 74/212 (34%), Positives = 111/212 (52%), Gaps = 17/212 (8%)
Query: 28 DNPVDYEESQIIMEREIQRISLGN-AEELVWLLEHPPLYTSGTSAISDDLLSPKS---LP 83
DN V +E++ + Q + + VWLLEH YT G A D+LL +
Sbjct: 24 DNIVPFEDAWKWQKEWQQALIEDPSNPQAVWLLEHQLCYTLGRGASEDNLLFSLNNPPAD 83
Query: 84 VYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERRED 143
V+ RGG T+H PGQ + Y++L+L + KDL ++ LE+V+I L LGI GER +
Sbjct: 84 VFRIDRGGEVTHHMPGQLVTYLVLDLRRFNKDLNWYLRQLEQVLIDVLADLGIDGERLDG 143
Query: 144 RVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPDLSYYTGIVPCGIS 203
G+W + +K+A+IGI R+WI+ HG SLN+ DL + IVPCG+
Sbjct: 144 LTGVW-------------IGNKKVASIGIGCRRWITQHGFSLNVDCDLEGFNKIVPCGLE 190
Query: 204 QHGVTSLKELGYSYSMKYIDTLIRKSFESVFG 235
V L + ++K + L++KS + FG
Sbjct: 191 GCQVGRLSDWIPGLNIKEVKPLLKKSLQERFG 222
>gnl|CDD|184637 PRK14343, PRK14343, lipoate-protein ligase B; Provisional.
Length = 235
Score = 130 bits (328), Expect = 4e-31
Identities = 58/147 (39%), Positives = 83/147 (56%), Gaps = 9/147 (6%)
Query: 56 VWLLEHPPLYTSGTSAISDDLLSPKS-LPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRK 114
+WL+EHPP+YT G + LL S +P+ RGG TYHGPGQ + Y++L+L +R+
Sbjct: 47 IWLVEHPPVYTLGQAGDPAHLLVADSGIPLVKVDRGGQITYHGPGQVVAYLLLDLRRRKL 106
Query: 115 DLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRI 174
+R V +E+ +I TL + ER+ GI+V KIAA+G++I
Sbjct: 107 MVRELVTRIEQAVIDTLAAYNLASERKAGAPGIYV--------ASGPHQGAKIAALGLKI 158
Query: 175 RKWISFHGLSLNISPDLSYYTGIVPCG 201
R S+HGLSLN+ DL + I PCG
Sbjct: 159 RNGCSYHGLSLNVKMDLRPFLAINPCG 185
>gnl|CDD|184639 PRK14346, PRK14346, lipoate-protein ligase B; Provisional.
Length = 230
Score = 126 bits (317), Expect = 8e-30
Identities = 64/187 (34%), Positives = 101/187 (54%), Gaps = 18/187 (9%)
Query: 31 VDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDDLLSPKSLPVYTTGRG 90
VDY + M+ + +EL W+ EHPP+YT G + +D +L+P +PV T RG
Sbjct: 11 VDYLATVQAMQAFTAERTPETPDEL-WICEHPPVYTQGLAGKADHVLNPGDIPVVATNRG 69
Query: 91 GGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVV 150
G TYHGPGQ + Y +++L + ++ +V +EE +IRTL G+ G R GI+ V
Sbjct: 70 GQVTYHGPGQVVAYPLIDLRRAGYFVKEYVYRIEEAVIRTLAHFGVTGHRVAGAPGIY-V 128
Query: 151 RLNKTRDNQLLLIEE----------------KIAAIGIRIRKWISFHGLSLNISPDLSYY 194
RL+ + L KIAA+GI++ + ++HG++LN++ DL +
Sbjct: 129 RLDDPFSHAALPQRPQKRGGGAPQPPFRGLGKIAALGIKVSRHCTYHGVALNVAMDLEPF 188
Query: 195 TGIVPCG 201
+ I PCG
Sbjct: 189 SRINPCG 195
>gnl|CDD|172825 PRK14349, PRK14349, lipoate-protein ligase B; Provisional.
Length = 220
Score = 122 bits (307), Expect = 9e-29
Identities = 69/199 (34%), Positives = 101/199 (50%), Gaps = 12/199 (6%)
Query: 22 IRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDDLLSPKS 81
I+W + P DY M+ G A+E +WL EH P+YT G + + LL+P
Sbjct: 2 IKW--LARPADYASVWDAMKAFTAARGPGTADE-IWLCEHAPVYTLGQAGRPEHLLNPGL 58
Query: 82 LPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVG-ER 140
+PV RGG TYHGPGQ + Y + +L + +R +V LE+ + TL+ LG+ R
Sbjct: 59 IPVVHCDRGGQVTYHGPGQVLAYTLFDLRRAGLYVREYVDMLEQATLATLRELGLEQACR 118
Query: 141 REDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPDLSYYTGIVPC 200
+ GI+V + KIAA+G+++R ++HGL+LNI DLS + GI PC
Sbjct: 119 KPGAPGIYVPQPGGEL--------AKIAALGVKVRNGYAYHGLALNIDMDLSPFLGINPC 170
Query: 201 GISQHGVTSLKELGYSYSM 219
G L G S+
Sbjct: 171 GYEGLRTVDLAACGVRTSV 189
>gnl|CDD|172824 PRK14348, PRK14348, lipoate-protein ligase B; Provisional.
Length = 221
Score = 112 bits (280), Expect = 1e-25
Identities = 66/174 (37%), Positives = 94/174 (54%), Gaps = 15/174 (8%)
Query: 53 EELVWLLEHPPLYTSGTSA------ISDDLLSPKSLPVYTTGRGGGYTYHGPGQRIIYIM 106
E + EHP +YT G S + ++ L +Y RGG TYHGPGQ + Y +
Sbjct: 38 ENRIIFCEHPHVYTLGRSGKENNMLLGEEQLKTIGATLYHIDRGGDITYHGPGQLVCYPI 97
Query: 107 LNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEK 166
LNL + L+ +V LEE +IR G+V R E G+W + + +R K
Sbjct: 98 LNLEEFGLGLKEYVHLLEEAVIRVCASYGVVAGRLEKATGVW-LEGDTSR-------ARK 149
Query: 167 IAAIGIRIRKWISFHGLSLNISPDLSYYTGIVPCGISQHGVTSLK-ELGYSYSM 219
I AIG+R +++ HGL+LN++ DL Y++ I PCG GVTSL+ ELG+S M
Sbjct: 150 ICAIGVRSSHYVTMHGLALNVNTDLRYFSYIHPCGFIDKGVTSLQQELGHSIDM 203
>gnl|CDD|173521 PTZ00319, PTZ00319, NADH-cytochrome B5 reductase; Provisional.
Length = 300
Score = 36.3 bits (84), Expect = 0.007
Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 13/116 (11%)
Query: 88 GRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEV-----IIRTLKILGIVGERRE 142
G G + Y G G ++ K V A + I L+I+ + + +E
Sbjct: 139 GPVGKFEYLGNGTYTVHKGKGGLKTMH-----VDAFAMIAGGTGITPMLQIIHAIKKNKE 193
Query: 143 DRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPDLSYYTGIV 198
DR +++V N+T D+ LL E AA R W + L +P+ Y TG V
Sbjct: 194 DRTKVFLVYANQTEDDILLRKELDEAAKDPRFHVW---YTLDREATPEWKYGTGYV 246
>gnl|CDD|178532 PLN02946, PLN02946, cysteine-tRNA ligase.
Length = 557
Score = 30.7 bits (69), Expect = 0.39
Identities = 35/149 (23%), Positives = 64/149 (42%), Gaps = 24/149 (16%)
Query: 64 LYTSGTSAISDDLLSPKSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCF--VA 121
+ +++SDDL +P +L + + I +L+ K +K + +A
Sbjct: 410 FHDEFVTSMSDDLHTPVALAALSEP-----------LKTINDLLHTRKGKKQEKRLESLA 458
Query: 122 ALEEVIIRTLKILGIV----GERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIR---- 173
ALE+ I L +LG++ E + + R T + L IEE+ A +
Sbjct: 459 ALEKKIRDVLSVLGLMPTSYSEALQQLREKALRRAKLTEEQVLQKIEERTVARKNKEYEK 518
Query: 174 ---IRKWISFHGLSLNISPDLSYYTGIVP 199
IRK ++ G++L SPD + + +P
Sbjct: 519 SDAIRKDLAAVGIALMDSPDGTTWRPAIP 547
>gnl|CDD|181495 PRK08596, PRK08596, acetylornithine deacetylase; Validated.
Length = 421
Score = 28.9 bits (65), Expect = 1.3
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 32 DYEESQIIMEREIQRISLGNAEELVWLLEHPPLYT-SGTSAISD 74
YE+ + +EI+ A WL E+PP + G S I D
Sbjct: 286 TYEQ----VIKEIEEYIGKVAAADPWLRENPPQFKWGGESMIED 325
>gnl|CDD|163296 TIGR03502, lipase_Pla1_cef, extracellular lipase, Pla-1/cef family.
Members of this protein family are bacterial
lipoproteins largely from the Gammaproteobacteria.
Characterized members are expressed in extracellularly
and have esterase activity. Members include the lipase
Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell
elongation factor (cef) from Vibrio hollisae.
Length = 792
Score = 27.8 bits (62), Expect = 2.8
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 195 TGIVPCGISQHGVTSLKELGYSYSMKY 221
T P I QHG+T KE +++
Sbjct: 446 TDGWPVVIYQHGITGAKENALAFAGTL 472
>gnl|CDD|181163 PRK07906, PRK07906, hypothetical protein; Provisional.
Length = 426
Score = 27.5 bits (62), Expect = 3.2
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 16/49 (32%)
Query: 57 WLLE-HPPLYTSGTSAISDDLLSPKSLPVYTTGRGGGYTYHGPGQRIIY 104
WL++ HP L+ T AIS+ GG++ PG+ +Y
Sbjct: 149 WLVDNHPELFEGVTEAISE---------------VGGFSLTVPGRDRLY 182
>gnl|CDD|150138 pfam09362, DUF1996, Domain of unknown function (DUF1996). This
family of proteins are functionally uncharacterized.
Length = 229
Score = 27.7 bits (62), Expect = 3.3
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 69 TSAISDDLLSPKSLPVYTTGRGGGYTYHG 97
T+A +D+ P+ V + G GY HG
Sbjct: 195 TTAFNDEGNWPEQPFVLSNGDPTGYGAHG 223
>gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional.
Length = 566
Score = 27.0 bits (59), Expect = 4.7
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 22 IRWWVMDNPVDYEESQII 39
WW+ D P+++E S+I+
Sbjct: 462 FNWWINDIPIEHENSEIL 479
>gnl|CDD|162255 TIGR01214, rmlD, dTDP-4-dehydrorhamnose reductase. This enzyme
catalyzes the last of 4 steps in making dTDP-rhamnose, a
precursor of LPS core antigen, O-antigen, etc.
Length = 287
Score = 26.6 bits (59), Expect = 6.7
Identities = 19/81 (23%), Positives = 27/81 (33%), Gaps = 20/81 (24%)
Query: 77 LSPKSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCF---------VAALEEVI 127
P +L V T+ Y G + ML LA R ++LR L VI
Sbjct: 138 AGPNALIVRTSWL---YGGGGGRNFVR-TMLRLAGRGEELRVVDDQIGSPTYAKDLARVI 193
Query: 128 IRTLKILGIVGERREDRVGIW 148
L +R G++
Sbjct: 194 AALL-------QRLARARGVY 207
>gnl|CDD|163199 TIGR03282, methan_mark_13, putative methanogenesis marker 13
metalloprotein. Members of this protein family, to
date, are found in a completed prokaryotic genome if and
only if the species is one of the archaeal methanogens.
The exact function is unknown, but likely is linked to
methanogenesis or a process closely connected to it.
This metal cluster-binding family is related to
nitrogenase structural protein NifD and accessory
protein NifE, among others.
Length = 352
Score = 26.3 bits (58), Expect = 9.2
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Query: 207 VTSLKELGYSYSMKYID----TLIRKSF-ESVFGPTI 238
V LKELGY Y + +D TL +S ES FG T+
Sbjct: 312 VAPLKELGYDYVVVELDAHARTLGVRSIVESEFGETL 348
>gnl|CDD|183765 PRK12815, carB, carbamoyl phosphate synthase large subunit;
Reviewed.
Length = 1068
Score = 26.1 bits (58), Expect = 9.7
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 13/57 (22%)
Query: 205 HGVTSLKELGY----------SYSMKYIDTLIRKSFESVFGPTILH--EYANINDVI 249
H +LK+ GY + S Y DT R FE + +L+ E NI VI
Sbjct: 580 HAAFALKKEGYETIMINNNPETVSTDY-DTADRLYFEPLTLEDVLNVAEAENIKGVI 635
>gnl|CDD|161882 TIGR00443, hisZ_biosyn_reg, ATP phosphoribosyltransferase,
regulatory subunit. Apparant second copies of
histidyl-tRNA synthetase, found in Bacillus subtilis,
Synechocystis sp., Aquifex aeolicus, and others, are in
fact a regulatory subunit of ATP
phosphoribosyltransferase, and usually encoded by a gene
adjacent to that encoding the catalytic subunit.
Length = 314
Score = 26.0 bits (58), Expect = 9.8
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 6/32 (18%)
Query: 173 RIRKWISFHGLSLNISPDLS------YYTGIV 198
+ + + G+ IS DL YYTG++
Sbjct: 236 AVLELLEARGVEEYISLDLGLVRGYHYYTGLI 267
>gnl|CDD|178258 PLN02652, PLN02652, hydrolase; alpha/beta fold family protein.
Length = 395
Score = 26.0 bits (57), Expect = 9.9
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 97 GPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRV 145
G RII + +L RR RC V L +L ++ R RV
Sbjct: 14 GASGRIIPVFRSLLSRRALRRCLVFLHSLF----LWLLLLLRLRPRRRV 58
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.320 0.138 0.409
Gapped
Lambda K H
0.267 0.0641 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,361,213
Number of extensions: 289406
Number of successful extensions: 508
Number of sequences better than 10.0: 1
Number of HSP's gapped: 489
Number of HSP's successfully gapped: 30
Length of query: 257
Length of database: 5,994,473
Length adjustment: 91
Effective length of query: 166
Effective length of database: 4,028,145
Effective search space: 668672070
Effective search space used: 668672070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.5 bits)