RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780177|ref|YP_003064590.1| lipoyltransferase [Candidatus
Liberibacter asiaticus str. psy62]
(257 letters)
>2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus
thermophilus HB8} PDB: 2qht_A 2qhu_A 2qhv_A
Length = 237
Score = 141 bits (355), Expect = 2e-34
Identities = 71/212 (33%), Positives = 106/212 (50%), Gaps = 23/212 (10%)
Query: 31 VDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDDLLSP------KSLPV 84
V Y E+ +R + + GN + LLEHP + T G A ++LL P +
Sbjct: 31 VPYGEAWAYQKRVHREVVAGNRPPTLLLLEHPRVITLGRKATGENLLFPESWYRENGFEL 90
Query: 85 YTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDR 144
Y RGG TYHGPGQ + Y + + +++R F+ +EE I+R GI
Sbjct: 91 YWVERGGDVTYHGPGQLVGYPIFPV---GREVRRFLRQIEEAIVRVAAGYGISAYPTPGY 147
Query: 145 VGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPDLSYYTGIVPCGISQ 204
G+WV +K+ AIG+ +++ +SFHG +LN++ DL+ +T IVPCG+
Sbjct: 148 AGVWVGE-------------DKLCAIGVAVKEGVSFHGFALNVNTDLNDFTVIVPCGLKG 194
Query: 205 HGVTSL-KELGYSYSMKYIDTLIRKSFESVFG 235
GVTSL K LG M+ + +F VFG
Sbjct: 195 KGVTSLEKLLGRKVPMEEAKARVVAAFAEVFG 226
>1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid,
acyltransferase, mycobacterium tuberculosis structural
proteomics project; HET: DKA; 1.08A {Mycobacterium
tuberculosis} SCOP: d.104.1.3
Length = 232
Score = 132 bits (334), Expect = 5e-32
Identities = 64/231 (27%), Positives = 106/231 (45%), Gaps = 21/231 (9%)
Query: 9 LNTSMFPMENISPIRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSG 68
+ + + ++ +R VDY + + + + + LLEHP +YT+G
Sbjct: 7 IRSKLSAID----VRQL---GTVDYRTAWQLQRELADAR-VAGGADTLLLLEHPAVYTAG 58
Query: 69 TSAISDDLLSPKSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVII 128
PV T RGG T+HGPGQ + Y ++ L D+ +V LEE +I
Sbjct: 59 RRT-ETHERPIDGTPVVDTDRGGKITWHGPGQLVGYPIIGL-AEPLDVVNYVRRLEESLI 116
Query: 129 RTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNIS 188
+ LG+ R + R G+W+ + +AAIG+R+ + + HG +LN
Sbjct: 117 QVCADLGLHAGRVDGRSGVWLPGRPARK----------VAAIGVRVSRATTLHGFALNCD 166
Query: 189 PDLSYYTGIVPCGISQHGVTSL-KELGYSYSMKYIDTLIRKSFESVFGPTI 238
DL+ +T IVPCGIS VTSL ELG + ++ + + + + +
Sbjct: 167 CDLAAFTAIVPCGISDAAVTSLSAELGRTVTVDEVRATVAAAVCAALDGVL 217
>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A
{Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A*
2aru_A* 2c7i_A 2ars_A*
Length = 262
Score = 88.2 bits (218), Expect = 2e-18
Identities = 36/252 (14%), Positives = 78/252 (30%), Gaps = 27/252 (10%)
Query: 23 RWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTS-----AISDDLL 77
R +++ P + S E + G+ + ++ H G + D +
Sbjct: 4 RLLLLETPGNTRMSLAYDEAIYRSFQYGD-KPILRFYRHDRSVIIGYFQVAEEEVDLDYM 62
Query: 78 SPKSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIV 137
+ + GGG YH G ++ + D+ + E ++ +L+ILG+
Sbjct: 63 KKNGIMLARRYTGGGAVYHDLGDLNFSVVRS--SDDMDITSMFRTMNEAVVNSLRILGLD 120
Query: 138 GERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPD---LSYY 194
E + + + ++ E+KI +RK ++ + D LS
Sbjct: 121 ARPGE-LNDVSIPV---NKKTDIMAGEKKIMGAAGAMRKGAKLWHAAMLVHTDLDMLSAV 176
Query: 195 TGIVPCGISQHGVTSLKEL------GYSYSMKYIDTLIRKSFESVFGPTIL------HEY 242
+ S +E S+ + + + F E
Sbjct: 177 LKVPDEKFRDKIAKSTRERVANVTDFVDVSIDEVRNALIRGFSETLHIDFREDTITEKEE 236
Query: 243 ANINDVISTKQS 254
+ ++ K S
Sbjct: 237 SLARELFDKKYS 248
>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid,
ATP-binding, cytoplasm, nucleotide-binding, transferase,
lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A*
3a7a_A* 1x2g_A*
Length = 337
Score = 72.8 bits (178), Expect = 7e-14
Identities = 35/225 (15%), Positives = 76/225 (33%), Gaps = 31/225 (13%)
Query: 48 SLGNAEELVWLLEHPPLYTSGTS-----AISDDLLSPKSLPVYTTGRGGGYTYHGPGQRI 102
+ + +++L + G + + + ++ + GGG +H G
Sbjct: 26 QMPATQRVLFLWRNADTVVIGRAQNPWKECNTRRMEEDNVRLARRSSGGGAVFHDLGNTC 85
Query: 103 IYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLL 162
M + K +++ L LG+ E R + V + +
Sbjct: 86 FTFMAGKPEYDKT------ISTSIVLNALNALGVSAEASG-RNDLVV---------KTVE 129
Query: 163 IEEKIAAIGIRIRKWISFHGLSLNISPD---LSYYTGIVPCGISQHG-------VTSLKE 212
+ K++ R K FH +L ++ D L+ Y ++ G VT+L E
Sbjct: 130 GDRKVSGSAYRETKDRGFHHGTLLLNADLSRLANYLNPDKKKLAAKGITSVRSRVTNLTE 189
Query: 213 LGYSYSMKYIDTLIRKSFESVFGPTILHEYANINDVISTKQSEKK 257
L + + + I ++F + +G + E + N +
Sbjct: 190 LLPGITHEQVCEAITEAFFAHYGERVEAEIISPNKTPDLPNFAET 234
>1vqz_A Lipoate-protein ligase, putative; NP_345629.1, structural genomics,
joint center for structural genomics, JCSG; HET: MSE;
1.99A {Streptococcus pneumoniae TIGR4} SCOP: d.224.1.3
d.104.1.3
Length = 341
Score = 60.8 bits (147), Expect = 3e-10
Identities = 35/211 (16%), Positives = 63/211 (29%), Gaps = 33/211 (15%)
Query: 48 SLGNAEELVWLLEHPPLYTSGTS-----AISDDLLSPKSLPVYTTGRGGGYTYHGPGQRI 102
L + +++ L + P G I+ D + + V GGG YH
Sbjct: 36 HLLDEDQIFLLWINKPSIIVGRHQNTIEEINRDYVRENGIEVVRRISGGGAVYHDLNNLN 95
Query: 103 IYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLL 162
I+ K ++ + +I TL LG+ E T N L +
Sbjct: 96 YTIIS---KEDENKAFDFKSFSTPVINTLAQLGVKAEF--------------TGRNDLEI 138
Query: 163 IEEKIAAIGIRIRKWISFHGLSLNISPDLSYYTGIV---PCGISQHGVTSLK-------- 211
+K H L DLS + GV S++
Sbjct: 139 DGKKFCGNAQAYINGRIMHHGCLLFDVDLSVLANALKVSKDKFESKGVKSVRARVTNIIN 198
Query: 212 ELGYSYSMKYIDTLIRKSFESVFGPTILHEY 242
EL +++ L+ + + + + +
Sbjct: 199 ELPKKITVEKFRDLLLEYMKKEYPEMTEYVF 229
>2p5i_A BH3822 protein; PFAM03099, structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 2.21A {Bacillus halodurans c-125}
SCOP: d.104.1.3
Length = 288
Score = 49.6 bits (118), Expect = 7e-07
Identities = 25/178 (14%), Positives = 51/178 (28%), Gaps = 24/178 (13%)
Query: 75 DLLSPKSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKIL 134
+ L V GG G + ++L K + + E+I +
Sbjct: 78 EALKGFQHDVIVRNSGGLAVVLDSGILNLSLVLKEEKGFSIDDGY-ELMYELICSMFQDH 136
Query: 135 GIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPDLSYY 194
E RE +V L + +K A I R + + L +S +
Sbjct: 137 REQIEARE------IVGSYCPGSYDLSIDGKKFAGISQRRIRGGVAVQIYLCVSGSGAER 190
Query: 195 TGIV----PCGISQHG------------VTSLKE-LGYSYSMKYIDTLIRKSFESVFG 235
++ ++ + SL E LG +++ + + +
Sbjct: 191 AKMIRTFYDKAVAGQPTKFVYPRIKPETMASLSELLGQPHNVSDVLLKALMTLQQHGA 248
>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos
taurus}
Length = 347
Score = 49.3 bits (117), Expect = 8e-07
Identities = 28/196 (14%), Positives = 60/196 (30%), Gaps = 27/196 (13%)
Query: 72 ISDDLLSPKSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTL 131
+ +L+ + + + GGG YH G + K++ D + + +
Sbjct: 58 CNLNLMREEGVKLARRRSGGGTVYHDMGNINLTFFTT--KKKYDRMENLKLVVRALKAVH 115
Query: 132 KILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPD- 190
L + +R D + + + KI+ +I + ++H +L D
Sbjct: 116 PHLDVQATKRFD---LLLDG------------QFKISGTASKIGRNAAYHHCTLLCGTDG 160
Query: 191 --LSYYTGIVPCGISQHG-------VTSLKELGYSYSMKYIDTLIRKSFESVFGPTILHE 241
LS GI + V +L E + + + + + + +
Sbjct: 161 TFLSSLLKSPYQGIRSNATASTPALVKNLMEKDPTLTCEVVINAVATEYATSHQIDNHIH 220
Query: 242 YANINDVISTKQSEKK 257
N D K
Sbjct: 221 LINPTDETVFPGINSK 236
>2p0l_A Lipoate-protein ligase A; PFAM, lopoate-protein ligase A,
structural genomics, protein structure initiative,
PSI-2; 2.04A {Streptococcus agalactiae COH1} SCOP:
d.104.1.3
Length = 288
Score = 46.2 bits (109), Expect = 9e-06
Identities = 30/240 (12%), Positives = 68/240 (28%), Gaps = 35/240 (14%)
Query: 25 WVMDNPV----DYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTS-------AIS 73
+ + V D E+ I E ++ I+ N E ++ + G ++
Sbjct: 14 SIFKDYVTDAQDAEKPFIWTEVFLREINRSNQEIILHIWPMTKTVILGMLDRELPHLELA 73
Query: 74 DDLLSPKSLPVYTTGRGGGYTYHGPGQRII-YIMLNLAKRRKDLRCFVAALEEVIIRTLK 132
+ + GG G ++ ++ +R+ + + + I
Sbjct: 74 KKEIISRGYEPVVRNFGGLAVVADEGILNFSLVIPDVFERKLSISDGYLIMVDFIRSIFS 133
Query: 133 ILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRK--WISFHGLSLNISPD 190
E E + + L + +K A + R K LS+
Sbjct: 134 DFYQPIEHFEVETSYCPGKFD------LSINGKKFAGLAQRRIKNGIAVSIYLSVCGDQK 187
Query: 191 LS-------YYTGIVPCGISQHG-------VTSLKE-LGYSYSMKYIDTLIRKSFESVFG 235
Y G+ G + +L + L +++ + + S + V
Sbjct: 188 GRSQMISDFYKIGLGDTGSPIAYPNVDPEIMANLSDLLDCPMTVEDVIDRMLISLKQVGF 247
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 43.8 bits (103), Expect = 4e-05
Identities = 33/162 (20%), Positives = 49/162 (30%), Gaps = 77/162 (47%)
Query: 61 HPPLYTSGTSAISDDL------LSPKSL--PVYTTGRGGGYTYHGPGQRIIYIMLNLAKR 112
H L + I+ DL + K + PVY T G
Sbjct: 428 HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG---------------------- 465
Query: 113 RKDLR----CFVAALEEVIIR-------TLK-----IL-----GIVGERREDRVGIWVVR 151
DLR + + IIR T + IL G G +G V
Sbjct: 466 -SDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASG------LG---VL 515
Query: 152 LNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPDLSY 193
++ +D G+R+ I +L+I+PD Y
Sbjct: 516 THRNKDGT-----------GVRV---I--VAGTLDINPDDDY 541
Score = 33.0 bits (75), Expect = 0.077
Identities = 27/155 (17%), Positives = 46/155 (29%), Gaps = 62/155 (40%)
Query: 109 LAKRRKDLRCFVAA----------------LEEVIIRTLKILGIVG----------ERRE 142
L K ++ ++ ++ A V +++ I G E R+
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD 175
Query: 143 DRVGIWVVRLNKT-RDNQLLLIEEKIAAIGIRIRK-------WISFHGLSLNI------- 187
L +T L+ + I + + LNI
Sbjct: 176 ---------LYQTYHV----LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 188 --SPDLSYYTGI-VPC---GISQ--HGVTSLKELG 214
+PD Y I + C G+ Q H V + K LG
Sbjct: 223 SNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG 257
Score = 33.0 bits (75), Expect = 0.078
Identities = 44/209 (21%), Positives = 72/209 (34%), Gaps = 84/209 (40%)
Query: 57 WLLEHPPLYTSGTSAISDD-LLS-PKSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRK 114
WL E+P ++ D LLS P S P+ G ++ LA
Sbjct: 218 WL-ENP------SNTPDKDYLLSIPISCPL-----------IG--------VIQLAH--- 248
Query: 115 DLRCFVAALEEVIIRTLKILGI-VGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIR 173
+V T K+LG GE R G T +Q L + A+ I
Sbjct: 249 ----YVV--------TAKLLGFTPGELRSYLKGA-------TGHSQGL-----VTAVAIA 284
Query: 174 I-RKWISFHGLSLN-ISPDLSYYTGIVPCGISQH--GVTSLKELGYSYSMKYIDTLIRKS 229
W SF I+ + ++ G+ TSL S+ + S
Sbjct: 285 ETDSWESFFVSVRKAIT--VLFFIGVR----CYEAYPNTSL-----PPSI------LEDS 327
Query: 230 FESVFG-PT-ILHEYANINDVISTKQSEK 256
E+ G P+ +L +I++ ++ +Q +
Sbjct: 328 LENNEGVPSPML----SISN-LTQEQVQD 351
>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain,
hydrolase; 2.45A {Venezuelan equine encephalitis virus}
Length = 320
Score = 28.6 bits (64), Expect = 1.5
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
Query: 152 LNKTRDNQLLLIEEKIAAIGIRIRKWISFHG-------LSLNISPDLSYY 194
++K + +L++ EK++ G + W+S L L I D+ Y
Sbjct: 159 VSKLKGRTVLVVGEKLSVPGKMV-DWLSDRPEATFRARLDLGIPGDVPKY 207
>3kv0_A HET-C2; GLTP, glycolipid transfer protein, transport protein; HET:
MLY; 1.90A {Podospora anserina}
Length = 209
Score = 27.8 bits (62), Expect = 2.7
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 17 ENISPIRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWL 58
N+ IR ++ P++ + Q ++ E+ S E L+WL
Sbjct: 70 GNVEXIRXRMLAAPLESQNIQDLVRNELXTXSHTATEGLLWL 111
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel,
extradiol dioxygenase, metalloenzyme, trytophan
catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo
sapiens} PDB: 3fe5_A
Length = 286
Score = 26.1 bits (57), Expect = 7.9
Identities = 12/128 (9%), Positives = 24/128 (18%), Gaps = 19/128 (14%)
Query: 10 NTSMFPMENISPIRWWVMDNPVDYEESQIIMEREIQRISLGNAEELV------------- 56
+T E + +E + + +
Sbjct: 122 DTMDVLFEKWFYCKDLGTQLAPIIQEFFSSEQYRTGKPIPDQLLKEPPFPLSTRSIMEPM 181
Query: 57 ----WLLEHPPLYTSGTSAISDDLLSPKSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAKR 112
WL H +GT V G+G ++ + +
Sbjct: 182 SLDAWLDSHHRELQAGTPLSLFG--DTYETQVIAYGQGSSEGLRQNVDVWLWQLEGSSVV 239
Query: 113 RKDLRCFV 120
R
Sbjct: 240 TMGGRRLS 247
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.320 0.138 0.409
Gapped
Lambda K H
0.267 0.0655 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,339,817
Number of extensions: 112671
Number of successful extensions: 302
Number of sequences better than 10.0: 1
Number of HSP's gapped: 288
Number of HSP's successfully gapped: 14
Length of query: 257
Length of database: 5,693,230
Length adjustment: 90
Effective length of query: 167
Effective length of database: 3,511,270
Effective search space: 586382090
Effective search space used: 586382090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.5 bits)