BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780177|ref|YP_003064590.1| lipoyltransferase [Candidatus
Liberibacter asiaticus str. psy62]
         (257 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780177|ref|YP_003064590.1| lipoyltransferase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 257

 Score =  525 bits (1351), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 257/257 (100%), Positives = 257/257 (100%)

Query: 1   MELLSRNALNTSMFPMENISPIRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLE 60
           MELLSRNALNTSMFPMENISPIRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLE
Sbjct: 1   MELLSRNALNTSMFPMENISPIRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLE 60

Query: 61  HPPLYTSGTSAISDDLLSPKSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFV 120
           HPPLYTSGTSAISDDLLSPKSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFV
Sbjct: 61  HPPLYTSGTSAISDDLLSPKSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFV 120

Query: 121 AALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISF 180
           AALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISF
Sbjct: 121 AALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISF 180

Query: 181 HGLSLNISPDLSYYTGIVPCGISQHGVTSLKELGYSYSMKYIDTLIRKSFESVFGPTILH 240
           HGLSLNISPDLSYYTGIVPCGISQHGVTSLKELGYSYSMKYIDTLIRKSFESVFGPTILH
Sbjct: 181 HGLSLNISPDLSYYTGIVPCGISQHGVTSLKELGYSYSMKYIDTLIRKSFESVFGPTILH 240

Query: 241 EYANINDVISTKQSEKK 257
           EYANINDVISTKQSEKK
Sbjct: 241 EYANINDVISTKQSEKK 257


>gi|254780808|ref|YP_003065221.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 626

 Score = 26.2 bits (56), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 15/80 (18%)

Query: 134 LGIVGERREDRVGIWVVRLNKTRD--NQLLLIEEKIAAIGIRIRK---------WISFHG 182
           LG +GERR+ R   ++   N  R     L+L  + +++  I  ++         ++S+  
Sbjct: 453 LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPD 512

Query: 183 LSL----NISPDLSYYTGIV 198
            S+    +I PD   ++ +V
Sbjct: 513 FSIQNLFSICPDARKFSSLV 532


>gi|254781055|ref|YP_003065468.1| glutathione reductase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 461

 Score = 25.0 bits (53), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 12/21 (57%), Positives = 14/21 (66%)

Query: 73  SDDLLSPKSLPVYTTGRGGGY 93
           SD++ S KSLP  T   GGGY
Sbjct: 158 SDEIFSLKSLPQSTLIIGGGY 178


>gi|254780182|ref|YP_003064595.1| DNA gyrase subunit A [Candidatus Liberibacter asiaticus str. psy62]
          Length = 910

 Score = 24.6 bits (52), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 17/53 (32%)

Query: 116 LRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIA 168
           L+ FVA  EEV++R  K L                 LNK RD   +L+   IA
Sbjct: 358 LKAFVAFREEVVVRRTKYL-----------------LNKARDRAHVLVGLAIA 393


>gi|254780181|ref|YP_003064594.1| phosphopantetheine adenylyltransferase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 182

 Score = 22.3 bits (46), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 8/15 (53%), Positives = 13/15 (86%)

Query: 178 ISFHGLSLNISPDLS 192
           ISF GL++N++ D+S
Sbjct: 74  ISFEGLAVNLAKDIS 88


>gi|254780451|ref|YP_003064864.1| aconitate hydratase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 896

 Score = 22.3 bits (46), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 88  GRGGGYTYHGPGQRIIYI 105
           G+ GGYT H P +  ++I
Sbjct: 739 GKKGGYTIHYPSKEELFI 756


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.138    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 168,132
Number of Sequences: 1233
Number of extensions: 6909
Number of successful extensions: 17
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 7
length of query: 257
length of database: 328,796
effective HSP length: 72
effective length of query: 185
effective length of database: 240,020
effective search space: 44403700
effective search space used: 44403700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 37 (18.9 bits)