HHsearch alignment for GI: 254780178 and conserved domain: TIGR00430
>TIGR00430 Q_tRNA_tgt queuine tRNA-ribosyltransferase; InterPro: IPR004803 The queuine tRNA-ribosyltransferase (tgt) 2.4.2.29 from EC catalyzes an exchange for the guanine base at position 34 of many tRNAs; this nucleotide is subsequently modified to queuosine. The archaea have a closely related enzyme (IPR004804 from INTERPRO) that catalyses a base exchange for guanine at position 15 in some tRNAs, a site that is subsequently converted to the archaeal-specific modified base archaeosine (7-formamidino-7-deazaguanosine), while Archaeoglobus fulgidus has both enzymes. ; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0008616 queuosine biosynthetic process.
Probab=100.00 E-value=0 Score=1052.58 Aligned_cols=365 Identities=52% Similarity=0.883 Sum_probs=360.1
Q ss_pred EEEEEECCC--CEEEEEEECCEEEECCCEEECCCCCCCCCCCHHHHHHCC-CCEEEEEHHHHHHCCCHHHHHHCCCCHHH
Q ss_conf 999976499--327999878875405857410686856886889998609-98999322665738768998652742011
Q gi|254780178|r 7 FNLKAVSGS--ARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLG-ADVILGNAYHLMLRPGAERIARLGGLHKF 83 (378)
Q Consensus 7 F~i~~~~~~--aR~G~L~t~~g~i~TP~flpv~t~g~v~~lt~~~l~~~g-~~~il~Ntyhl~~~pg~~~i~~~gGlh~f 83 (378)
T Consensus 1 f~~~~~~~~~~AR~G~l~~~HG~veTP~FMPVGTlgtvKgl~~~~l~~~~Ga~~iLaNTYHL~LRPG~~~v~~~GGLH~F 80 (415)
T TIGR00430 1 FELQKTDKHSNARVGKLNTPHGSVETPVFMPVGTLGTVKGLTPEELKATGGAELILANTYHLYLRPGEKIVKELGGLHKF 80 (415)
T ss_pred CEEECCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHCCCEEEEECHHHHHCCCHHHHHHHHCCCCCH
T ss_conf 90202357553515465368886436764751379730489989998743846744021333136818999984586001
Q ss_pred CCCCCCEEECCCCCCCCHHH----------------------HCCCCCCC----------CEEEECCCCCCEEEECHHHH
Q ss_conf 01577224114543210122----------------------10223333----------10210144541587129999
Q gi|254780178|r 84 IRWFKPILTDSGGFQVMSLS----------------------KLCSIDEQ----------GVRFRSHIDGSLYRVSPEES 131 (378)
Q Consensus 84 l~~~~~ilTDSGgfQv~sl~----------------------~~~~~~~~----------Gv~f~s~~dG~~~~ltpe~~ 131 (378)
T Consensus 81 m~w~g~iLTDSGGFQvFSLsfG~ehGvGkiannifleelree~lR~i~e~rkklavvtdrGV~Fk~p~dG~~~~ltPek~ 160 (415)
T TIGR00430 81 MQWDGPILTDSGGFQVFSLSFGMEHGVGKIANNIFLEELREEDLRKIEEERKKLAVVTDRGVHFKSPIDGSKIFLTPEKS 160 (415)
T ss_pred HCCCCCEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEECCCCCCCEEEECHHHH
T ss_conf 03587746406750231200001100357787788876314432001000221567634760435788887020185789
Q ss_pred HHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC---CCCEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 9998732897799601213322115899999998899999998851358---8860554023444366899998876422
Q gi|254780178|r 132 VHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQ---PGKALFGIVQGGDNINLRSFSAERLKEL 208 (378)
Q Consensus 132 i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~---~~~~lfgiVqGG~~~dLR~~Sa~~l~~~ 208 (378)
T Consensus 161 ~~IQ~~LGSDIiM~fDeC~p~~ad~~~~~~s~~rt~rWA~~~l~~~~~~~~G~~~~LFgIvQGg~y~dLR~~S~~~L~~~ 240 (415)
T TIGR00430 161 MEIQYALGSDIIMAFDECTPYPADYDYAEKSTERTLRWAERCLEAHDRRKEGNKQALFGIVQGGTYEDLRSQSAKGLIEL 240 (415)
T ss_pred HHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHC
T ss_conf 99998628977987026887886578999999987999999998620247887775346870730488899999999861
Q ss_pred HHHHHHHHCC-CCCCCHHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCC--CC
Q ss_conf 2346766413-56751678998999898507703310025410189999998538983662000002332002456--21
Q gi|254780178|r 209 DLKGYAIGGL-AVGEPQEVMLHILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTR--FG 285 (378)
Q Consensus 209 ~~~G~aIgGl-~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t~--~g 285 (378)
T Consensus 241 df~GYAIGGLisVGEp~~~m~~il~~~~PLlP~dKPRYLMGvG~p~~l~~ai~~GiDmFDCV~PtR~aR~G~lfv~Pa~G 320 (415)
T TIGR00430 241 DFPGYAIGGLISVGEPKDDMLRILEHTAPLLPKDKPRYLMGVGTPEDLLDAIRRGIDMFDCVMPTRNARNGTLFVTPAEG 320 (415)
T ss_pred CCCCCEEECEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHCCCHHHHCCCCEEEEECCCC
T ss_conf 88950450324125888998889987503577768840205488899999998167410045201111583378632788
Q ss_pred -------CHHHHHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf -------0021012322368855986698133688989998868578508999999999999999999999999859989
Q gi|254780178|r 286 -------KINLRNARHIDDMRPLDAESHCSALRDYSRAYLHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFV 358 (378)
Q Consensus 286 -------~i~l~~~~~~~d~~pi~~~C~C~~C~~ytraYl~HL~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~ 358 (378)
T Consensus 321 Gnvrnkf~~~ikNA~y~~D~~P~d~~C~Cy~Ck~YSRAYL~HL~r~~EllG~rL~s~HNl~f~~rL~~~iR~AI~~d~f~ 400 (415)
T TIGR00430 321 GNVRNKFRINIKNAKYKDDTRPVDEECDCYTCKNYSRAYLRHLIRAKELLGARLASLHNLHFLLRLMEKIRQAILEDRFL 400 (415)
T ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 62012136762464632477688877776314411278987888631799999977889999999999998875368733
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 9999999985327
Q gi|254780178|r 359 DFAMQTQENWKKG 371 (378)
Q Consensus 359 ~~~~~~~~~~~~~ 371 (378)
T Consensus 401 ~F~~~f~~~~g~~ 413 (415)
T TIGR00430 401 SFREEFLEKYGEE 413 (415)
T ss_pred CHHHHHHHHCCCC
T ss_conf 0589999972578