Query gi|254780178|ref|YP_003064591.1| queuine tRNA-ribosyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 378
No_of_seqs 151 out of 1891
Neff 6.3
Searched_HMMs 39220
Date Mon May 23 06:24:24 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780178.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00430 Q_tRNA_tgt queuine t 100.0 0 0 1052.6 25.9 365 7-371 1-413 (415)
2 PRK00112 tgt queuine tRNA-ribo 100.0 0 0 969.7 32.6 365 3-367 1-366 (366)
3 COG0343 Tgt Queuine/archaeosin 100.0 0 0 921.5 29.1 369 7-375 1-369 (372)
4 PRK01008 queuine tRNA-ribosylt 100.0 0 0 907.4 30.1 349 4-357 2-372 (372)
5 KOG3908 consensus 100.0 0 0 775.8 14.9 372 5-377 8-383 (396)
6 PRK13533 7-cyano-7-deazaguanin 100.0 0 0 694.8 26.1 327 5-365 1-330 (486)
7 PRK13534 7-cyano-7-deazaguanin 100.0 0 0 635.7 22.9 324 6-364 1-327 (630)
8 pfam01702 TGT Queuine tRNA-rib 100.0 0 0 577.3 20.1 238 129-366 1-238 (238)
9 TIGR00432 arcsn_tRNA_tgt archa 100.0 0 0 581.9 15.9 332 7-366 1-336 (658)
10 TIGR00449 tgt_general tRNA-gua 100.0 0 0 538.7 21.5 364 7-370 1-372 (375)
11 KOG3909 consensus 100.0 0 0 458.3 20.3 354 5-366 1-382 (414)
12 COG1549 Queuine tRNA-ribosyltr 98.8 6.1E-09 1.5E-13 80.2 3.4 89 235-365 91-179 (519)
13 PHA01745 hypothetical protein 98.2 4E-06 1E-10 61.2 6.9 167 83-286 30-200 (306)
14 PRK12330 oxaloacetate decarbox 97.2 0.02 5.2E-07 36.4 12.3 220 129-378 100-341 (499)
15 COG5016 Pyruvate/oxaloacetate 96.5 0.085 2.2E-06 32.2 12.8 221 113-378 90-341 (472)
16 pfam00682 HMGL-like HMGL-like. 96.3 0.11 2.8E-06 31.4 11.0 153 127-282 68-226 (237)
17 TIGR01108 oadA oxaloacetate de 95.6 0.09 2.3E-06 32.0 7.7 218 113-378 83-336 (616)
18 PRK09282 pyruvate carboxylase 95.1 0.31 7.8E-06 28.5 10.3 145 111-275 87-236 (580)
19 PRK12581 oxaloacetate decarbox 93.9 0.57 1.5E-05 26.6 10.9 133 129-275 108-244 (468)
20 KOG2368 consensus 93.3 0.48 1.2E-05 27.2 7.0 216 26-282 29-264 (316)
21 PRK12331 oxaloacetate decarbox 93.2 0.76 1.9E-05 25.8 10.6 133 129-275 99-235 (463)
22 PRK12999 pyruvate carboxylase; 91.6 0.56 1.4E-05 26.7 5.6 149 110-274 617-772 (1147)
23 PRK03170 dihydrodipicolinate s 90.2 1 2.5E-05 25.0 5.8 21 249-269 185-205 (292)
24 cd00950 DHDPS Dihydrodipicolin 89.9 1.1 2.8E-05 24.8 5.8 119 129-270 85-205 (284)
25 PRK05437 isopentenyl pyrophosp 89.3 1.1 2.9E-05 24.7 5.5 156 105-275 114-296 (351)
26 pfam00701 DHDPS Dihydrodipicol 88.0 1.7 4.4E-05 23.4 5.7 119 129-271 86-207 (289)
27 PRK08255 salicylyl-CoA 5-hydro 87.8 2.2 5.6E-05 22.7 6.2 46 226-271 608-665 (770)
28 PRK03620 5-dehydro-4-deoxygluc 87.8 1.7 4.4E-05 23.4 5.6 18 129-146 85-102 (296)
29 pfam01070 FMN_dh FMN-dependent 87.6 1.4 3.7E-05 23.9 5.1 130 129-275 125-259 (301)
30 PRK05692 hydroxymethylglutaryl 87.3 2.4 6.2E-05 22.4 7.9 133 132-270 85-232 (287)
31 TIGR03249 KdgD 5-dehydro-4-deo 87.2 2.4 6E-05 22.5 6.0 30 241-270 180-210 (296)
32 cd00952 CHBPH_aldolase Trans-o 87.1 1.7 4.4E-05 23.4 5.3 17 130-146 94-110 (309)
33 PRK04147 N-acetylneuraminate l 86.5 2.6 6.6E-05 22.2 6.0 116 129-270 89-208 (294)
34 cd00951 KDGDH 5-dehydro-4-deox 85.1 2.8 7.1E-05 22.0 5.5 16 131-146 86-101 (289)
35 cd00408 DHDPS-like Dihydrodipi 83.9 3.6 9.1E-05 21.3 5.8 22 249-270 181-202 (281)
36 TIGR01418 PEP_synth phosphoeno 83.5 0.87 2.2E-05 25.4 2.4 73 202-274 770-870 (877)
37 cd00954 NAL N-Acetylneuraminic 83.0 3.9 9.9E-05 21.1 5.7 34 234-270 174-207 (288)
38 cd02811 IDI-2_FMN Isopentenyl- 81.7 4.3 0.00011 20.8 7.3 152 106-272 107-287 (326)
39 PRK13129 consensus 78.7 5.3 0.00014 20.1 8.0 203 30-267 18-233 (267)
40 COG1038 PycA Pyruvate carboxyl 77.2 4.3 0.00011 20.7 4.2 151 110-274 619-774 (1149)
41 cd00953 KDG_aldolase KDG (2-ke 74.7 6.8 0.00017 19.4 5.7 29 244-272 174-202 (279)
42 COG0329 DapA Dihydrodipicolina 73.4 7.3 0.00019 19.2 5.3 121 129-272 89-212 (299)
43 PRK13127 consensus 72.1 7.9 0.0002 19.0 9.8 199 30-267 10-225 (262)
44 TIGR01962 NuoD NADH dehydrogen 71.0 7.1 0.00018 19.3 4.0 108 209-327 148-265 (408)
45 pfam06180 CbiK Cobalt chelatas 70.1 3.2 8.1E-05 21.6 2.1 64 188-254 82-148 (256)
46 COG2089 SpsE Sialic acid synth 68.8 8.7 0.00022 18.7 4.1 89 156-260 78-167 (347)
47 TIGR03217 4OH_2_O_val_ald 4-hy 66.8 10 0.00026 18.3 13.3 137 131-282 92-233 (333)
48 PRK12838 carbamoyl phosphate s 66.0 4.5 0.00011 20.7 2.2 71 201-277 200-270 (356)
49 PRK12564 carbamoyl phosphate s 65.8 5.3 0.00014 20.1 2.5 65 201-270 204-268 (355)
50 PRK13125 trpA tryptophan synth 65.6 11 0.00027 18.1 8.5 207 28-267 2-215 (247)
51 cd00311 TIM Triosephosphate is 62.6 12 0.00031 17.8 4.7 20 243-262 200-220 (242)
52 PRK08318 dihydropyrimidine deh 62.0 12 0.00032 17.7 7.8 40 228-267 239-280 (413)
53 pfam04481 DUF561 Protein of un 61.2 3.6 9.3E-05 21.2 1.0 161 186-356 62-241 (243)
54 pfam12167 DUF3596 Domain of un 58.9 9.9 0.00025 18.3 2.9 32 333-365 30-61 (88)
55 COG0214 SNZ1 Pyridoxine biosyn 58.7 14 0.00036 17.3 6.0 31 247-277 215-252 (296)
56 TIGR01235 pyruv_carbox pyruvat 58.4 14 0.00036 17.3 4.3 224 108-364 632-882 (1169)
57 cd00945 Aldolase_Class_I Class 58.2 11 0.00028 18.0 3.1 80 185-268 116-200 (201)
58 TIGR01830 3oxo_ACP_reduc 3-oxo 57.2 8.4 0.00021 18.8 2.3 54 197-260 157-216 (238)
59 PRK00115 hemE uroporphyrinogen 56.6 15 0.00039 17.1 8.9 23 243-265 242-264 (347)
60 cd02809 alpha_hydroxyacid_oxid 56.6 15 0.00039 17.1 5.5 148 104-274 109-261 (299)
61 cd04738 DHOD_2_like Dihydrooro 56.6 15 0.00039 17.1 10.2 138 127-267 146-307 (327)
62 PRK00685 metal-dependent hydro 56.5 15 0.00039 17.1 4.4 13 133-145 151-163 (228)
63 pfam05690 ThiG Thiazole biosyn 56.3 15 0.00039 17.0 9.9 115 127-266 73-200 (246)
64 COG2022 ThiG Uncharacterized e 56.1 15 0.00039 17.0 8.1 115 127-266 81-208 (262)
65 cd04728 ThiG Thiazole synthase 55.6 16 0.0004 17.0 10.0 115 127-266 74-201 (248)
66 PRK06552 keto-hydroxyglutarate 53.8 11 0.00028 18.0 2.5 42 229-275 100-141 (209)
67 CHL00197 carA carbamoyl-phosph 52.9 15 0.00038 17.1 3.0 71 201-276 227-298 (383)
68 COG0505 CarA Carbamoylphosphat 52.6 16 0.0004 17.0 3.1 70 201-275 212-281 (368)
69 TIGR03147 cyt_nit_nrfF cytochr 52.5 18 0.00045 16.7 4.3 51 301-369 37-87 (126)
70 TIGR02082 metH methionine synt 52.4 18 0.00045 16.6 7.9 174 54-265 388-591 (1265)
71 TIGR03190 benz_CoA_bzdN benzoy 51.7 18 0.00046 16.6 6.4 227 111-354 90-341 (377)
72 PRK09279 pyruvate phosphate di 51.7 18 0.00046 16.6 9.3 23 244-266 537-559 (875)
73 PRK10144 formate-dependent nit 51.5 18 0.00047 16.5 4.4 51 301-369 37-87 (126)
74 PRK07455 keto-hydroxyglutarate 51.3 13 0.00032 17.6 2.4 32 242-274 106-137 (210)
75 cd00452 KDPG_aldolase KDPG and 51.1 13 0.00034 17.5 2.5 42 229-275 88-129 (190)
76 TIGR01368 CPSaseIIsmall carbam 51.1 15 0.00039 17.0 2.8 64 202-270 230-294 (383)
77 COG1242 Predicted Fe-S oxidore 51.0 19 0.00047 16.5 4.6 127 126-256 126-274 (312)
78 PRK07114 keto-hydroxyglutarate 49.9 13 0.00034 17.5 2.4 30 243-273 114-143 (223)
79 pfam01081 Aldolase KDPG and KH 49.5 14 0.00037 17.2 2.5 31 242-273 101-131 (196)
80 PRK05718 keto-hydroxyglutarate 49.4 15 0.00037 17.2 2.5 31 242-273 108-138 (212)
81 PTZ00333 triosephosphate isome 49.3 20 0.0005 16.3 5.8 75 150-234 175-250 (252)
82 KOG2343 consensus 49.3 20 0.0005 16.3 3.2 75 276-360 561-640 (689)
83 PRK08904 consensus 49.0 15 0.00038 17.1 2.5 31 242-273 103-133 (207)
84 KOG1643 consensus 48.9 17 0.00043 16.8 2.8 99 125-233 140-245 (247)
85 PRK06015 keto-hydroxyglutarate 48.6 15 0.00039 17.1 2.5 31 242-273 108-138 (212)
86 cd02940 DHPD_FMN Dihydropyrimi 48.1 21 0.00052 16.2 8.0 41 227-267 238-279 (299)
87 PRK08782 consensus 47.6 16 0.00041 16.9 2.5 51 242-293 110-172 (219)
88 cd00717 URO-D Uroporphyrinogen 47.5 21 0.00054 16.1 8.7 38 129-166 180-217 (335)
89 pfam03918 CcmH Cytochrome C bi 47.2 21 0.00054 16.1 4.4 26 343-368 58-83 (145)
90 PRK11320 prpB 2-methylisocitra 46.7 22 0.00055 16.1 4.5 124 127-266 94-231 (292)
91 PRK06857 consensus 45.8 18 0.00046 16.6 2.5 31 242-273 105-135 (209)
92 PRK13131 consensus 45.4 23 0.00057 15.9 6.5 205 30-267 10-225 (257)
93 PRK08104 consensus 45.3 18 0.00046 16.5 2.5 31 242-273 108-138 (212)
94 KOG4422 consensus 44.6 23 0.00059 15.8 4.9 74 287-360 337-420 (625)
95 COG1646 Predicted phosphate-bi 43.2 15 0.00039 17.1 1.8 23 245-267 196-218 (240)
96 cd00739 DHPS DHPS subgroup of 42.6 25 0.00063 15.6 4.3 26 117-143 13-41 (257)
97 COG0381 WecB UDP-N-acetylgluco 41.7 9.7 0.00025 18.4 0.6 19 130-148 83-101 (383)
98 TIGR01182 eda 2-dehydro-3-deox 40.8 21 0.00055 16.1 2.3 49 244-293 104-164 (205)
99 TIGR02855 spore_yabG sporulati 40.7 23 0.00059 15.8 2.4 89 108-208 138-235 (292)
100 pfam06838 Alum_res Aluminium r 39.6 25 0.00063 15.7 2.4 117 84-209 130-254 (405)
101 PRK00042 tpiA triosephosphate 39.3 28 0.00071 15.3 5.9 75 150-234 174-249 (251)
102 PRK09140 2-dehydro-3-deoxy-6-p 38.8 24 0.00062 15.7 2.3 30 242-272 104-133 (206)
103 PRK00208 thiG thiazole synthas 38.8 28 0.00072 15.3 8.4 185 21-266 2-202 (256)
104 COG3963 Phospholipid N-methylt 38.7 22 0.00055 16.1 2.0 60 188-250 98-158 (194)
105 CHL00162 thiG thiamin biosynth 38.3 29 0.00073 15.2 11.1 116 126-266 81-215 (267)
106 pfam02896 PEP-utilizers_C PEP- 37.8 20 0.0005 16.3 1.7 35 239-274 244-280 (292)
107 COG1304 idi Isopentenyl diphos 35.6 24 0.00061 15.8 1.8 48 228-275 260-308 (360)
108 TIGR01422 phosphonatase phosph 34.8 33 0.00083 14.8 3.5 119 140-266 30-173 (199)
109 TIGR01212 TIGR01212 radical SA 33.7 34 0.00087 14.7 5.1 90 154-245 149-260 (307)
110 TIGR02151 IPP_isom_2 isopenten 33.6 17 0.00044 16.7 0.9 217 23-275 50-305 (349)
111 PRK05588 histidinol-phosphatas 33.0 35 0.00089 14.7 3.7 87 125-220 16-102 (256)
112 COG3088 CcmH Uncharacterized p 32.9 35 0.00089 14.7 2.4 11 195-205 64-74 (153)
113 TIGR01236 D1pyr5carbox1 1-pyrr 32.7 31 0.00079 15.0 2.0 16 304-322 321-336 (551)
114 PRK11177 phosphoenolpyruvate-p 32.6 20 0.0005 16.3 1.0 36 240-276 495-532 (575)
115 pfam01215 COX5B Cytochrome c o 32.5 32 0.00081 14.9 2.1 31 250-281 15-45 (99)
116 COG0502 BioB Biotin synthase a 32.4 36 0.00091 14.6 4.8 63 183-246 166-230 (335)
117 pfam00809 Pterin_bind Pterin b 32.2 36 0.00092 14.6 5.1 14 251-264 79-92 (208)
118 cd00423 Pterin_binding Pterin 32.1 36 0.00092 14.6 4.4 141 110-267 94-243 (258)
119 PRK00733 hppA membrane-bound p 32.0 14 0.00035 17.4 0.1 40 228-273 192-239 (682)
120 PRK12464 1-deoxy-D-xylulose 5- 31.9 29 0.00074 15.2 1.8 110 184-304 167-300 (392)
121 TIGR01001 metA homoserine O-su 31.8 26 0.00066 15.5 1.5 42 197-238 85-135 (305)
122 PRK01295 phosphoglyceromutase; 31.7 37 0.00093 14.5 5.5 150 80-265 18-174 (206)
123 COG4822 CbiK Cobalamin biosynt 31.3 37 0.00095 14.5 3.2 71 187-260 83-156 (265)
124 TIGR00854 pts-sorbose PTS syst 30.9 36 0.00091 14.6 2.1 61 196-267 40-101 (152)
125 PRK07094 biotin synthase; Prov 30.8 38 0.00097 14.4 5.7 74 184-260 153-241 (323)
126 PRK05567 inositol-5'-monophosp 30.7 38 0.00097 14.4 6.1 23 340-362 429-454 (486)
127 pfam09419 DUF2010 Protein of u 29.9 21 0.00055 16.1 0.8 37 32-68 16-55 (166)
128 PRK13124 consensus 29.6 40 0.001 14.3 8.2 197 30-267 8-221 (257)
129 pfam03030 H_PPase Inorganic H+ 29.6 20 0.0005 16.3 0.6 37 228-270 183-227 (669)
130 PRK11197 lldD L-lactate dehydr 29.4 40 0.001 14.3 3.4 36 228-265 234-269 (381)
131 pfam08436 DXP_redisom_C 1-deox 29.3 27 0.00068 15.4 1.2 24 87-110 24-48 (84)
132 PRK10810 anti-sigma28 factor F 28.1 42 0.0011 14.1 2.1 13 345-357 64-76 (98)
133 COG0157 NadC Nicotinate-nucleo 27.7 43 0.0011 14.1 3.7 31 246-276 239-269 (280)
134 cd03332 LMO_FMN L-Lactate 2-mo 27.7 43 0.0011 14.1 3.5 37 228-266 242-278 (383)
135 TIGR01769 GGGP geranylgeranylg 27.6 43 0.0011 14.1 2.4 70 196-266 137-209 (212)
136 PRK08385 nicotinate-nucleotide 27.5 43 0.0011 14.1 3.6 52 225-276 215-267 (279)
137 cd02922 FCB2_FMN Flavocytochro 27.5 43 0.0011 14.0 3.6 37 228-266 202-238 (344)
138 PRK11840 bifunctional sulfur c 27.3 43 0.0011 14.0 7.9 143 111-266 79-276 (327)
139 cd00381 IMPDH IMPDH: The catal 27.1 44 0.0011 14.0 6.4 111 133-266 100-223 (325)
140 COG0743 Dxr 1-deoxy-D-xylulose 26.3 38 0.00097 14.4 1.6 23 123-145 73-95 (385)
141 CHL00200 trpA tryptophan synth 26.2 45 0.0012 13.9 9.3 120 125-267 105-229 (263)
142 pfam04777 Evr1_Alr Erv1 / Alr 26.2 26 0.00067 15.5 0.7 33 305-337 37-72 (95)
143 KOG1057 consensus 26.1 45 0.0011 13.9 1.9 102 248-350 510-646 (1018)
144 PRK04053 rps13p 30S ribosomal 25.9 46 0.0012 13.9 3.1 19 246-264 30-48 (149)
145 TIGR02026 BchE magnesium-proto 25.8 46 0.0012 13.9 3.7 111 118-250 43-154 (506)
146 TIGR03152 cyto_c552_HCOOH form 25.8 46 0.0012 13.9 7.8 98 259-368 239-337 (439)
147 cd04736 MDH_FMN Mandelate dehy 25.8 46 0.0012 13.8 3.4 36 228-265 225-260 (361)
148 TIGR01788 Glu-decarb-GAD gluta 25.7 46 0.0012 13.8 2.9 176 31-209 177-406 (493)
149 TIGR01125 TIGR01125 MiaB-like 25.6 46 0.0012 13.8 2.2 18 150-167 289-306 (475)
150 PRK06267 hypothetical protein; 25.3 47 0.0012 13.8 6.8 51 184-237 141-194 (324)
151 cd00517 ATPS ATP-sulfurylase ( 24.5 49 0.0012 13.7 8.6 105 78-208 109-218 (356)
152 pfam11876 DUF3396 Protein of u 24.4 49 0.0012 13.7 3.6 21 125-145 72-92 (208)
153 TIGR01371 met_syn_B12ind 5-met 24.2 49 0.0013 13.7 3.8 14 53-66 47-60 (778)
154 cd02810 DHOD_DHPD_FMN Dihydroo 24.2 49 0.0013 13.7 8.9 43 225-267 227-270 (289)
155 pfam05853 DUF849 Prokaryotic p 24.0 50 0.0013 13.6 9.1 132 125-265 87-225 (274)
156 cd01568 QPRTase_NadC Quinolina 23.9 50 0.0013 13.6 3.2 30 247-276 233-262 (269)
157 PRK05447 1-deoxy-D-xylulose 5- 23.7 40 0.001 14.3 1.3 94 172-275 153-256 (379)
158 pfam01729 QRPTase_C Quinolinat 23.5 51 0.0013 13.6 3.9 64 205-276 96-162 (169)
159 PRK07107 inositol-5-monophosph 23.5 51 0.0013 13.6 6.4 83 179-266 227-309 (497)
160 TIGR01464 hemE uroporphyrinoge 23.1 52 0.0013 13.5 6.8 39 129-167 184-222 (351)
161 cd04737 LOX_like_FMN L-Lactate 23.0 52 0.0013 13.5 3.4 24 242-265 222-245 (351)
162 cd00924 Cyt_c_Oxidase_Vb Cytoc 22.9 47 0.0012 13.8 1.5 29 250-280 15-43 (97)
163 pfam01680 SOR_SNZ SOR/SNZ fami 22.8 52 0.0013 13.5 3.6 135 209-364 46-186 (209)
164 TIGR00793 kdgT 2-keto-3-deoxyg 22.6 42 0.0011 14.1 1.2 33 185-217 179-212 (314)
165 pfam00218 IGPS Indole-3-glycer 22.5 53 0.0014 13.4 4.0 37 231-267 199-236 (254)
166 COG3303 NrfA Formate-dependent 22.3 42 0.0011 14.1 1.2 67 249-325 281-351 (501)
167 PRK00719 alkanesulfonate monoo 22.0 54 0.0014 13.4 2.4 23 249-271 304-331 (377)
168 PRK04180 pyridoxine biosynthes 21.8 55 0.0014 13.3 4.2 31 247-277 212-249 (293)
169 cd04722 TIM_phosphate_binding 21.7 55 0.0014 13.3 8.9 120 128-267 73-197 (200)
170 KOG4175 consensus 21.1 56 0.0014 13.3 4.8 113 126-260 110-227 (268)
171 KOG3985 consensus 21.0 31 0.0008 15.0 0.3 19 132-150 78-96 (283)
172 PRK11061 fused phosphoenolpyru 21.0 52 0.0013 13.5 1.4 35 241-276 662-698 (748)
173 KOG2833 consensus 20.8 57 0.0015 13.2 5.1 49 202-260 240-288 (395)
174 pfam00478 IMPDH IMP dehydrogen 20.7 57 0.0015 13.2 6.0 17 248-264 334-350 (467)
175 KOG1606 consensus 20.6 37 0.00095 14.5 0.6 31 247-277 216-253 (296)
176 cd04727 pdxS PdxS is a subunit 20.6 58 0.0015 13.2 3.8 31 247-277 203-240 (283)
177 PTZ00134 40S ribosomal protein 20.4 58 0.0015 13.2 2.7 18 247-264 36-53 (154)
178 TIGR01718 Uridine-psphlse urid 20.4 54 0.0014 13.4 1.4 11 256-266 74-84 (248)
179 PRK07084 fructose-bisphosphate 20.4 58 0.0015 13.2 7.9 101 155-258 117-235 (321)
180 TIGR01762 chlorin-enz chlorina 20.3 59 0.0015 13.1 2.2 31 125-155 75-105 (293)
181 COG1897 MetA Homoserine trans- 20.3 58 0.0015 13.2 1.5 17 203-219 93-109 (307)
182 KOG0604 consensus 20.2 46 0.0012 13.9 1.0 69 267-341 257-325 (400)
183 COG3411 Ferredoxin [Energy pro 20.1 59 0.0015 13.1 2.4 40 90-137 4-43 (64)
184 PRK12460 2-keto-3-deoxyglucona 20.1 22 0.00057 16.0 -0.6 34 184-217 170-204 (308)
185 PRK05665 amidotransferase; Pro 20.1 59 0.0015 13.1 3.9 159 184-367 42-235 (240)
No 1
>TIGR00430 Q_tRNA_tgt queuine tRNA-ribosyltransferase; InterPro: IPR004803 The queuine tRNA-ribosyltransferase (tgt) 2.4.2.29 from EC catalyzes an exchange for the guanine base at position 34 of many tRNAs; this nucleotide is subsequently modified to queuosine. The archaea have a closely related enzyme (IPR004804 from INTERPRO) that catalyses a base exchange for guanine at position 15 in some tRNAs, a site that is subsequently converted to the archaeal-specific modified base archaeosine (7-formamidino-7-deazaguanosine), while Archaeoglobus fulgidus has both enzymes. ; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0008616 queuosine biosynthetic process.
Probab=100.00 E-value=0 Score=1052.58 Aligned_cols=365 Identities=52% Similarity=0.883 Sum_probs=360.1
Q ss_pred EEEEEECCC--CEEEEEEECCEEEECCCEEECCCCCCCCCCCHHHHHHCC-CCEEEEEHHHHHHCCCHHHHHHCCCCHHH
Q ss_conf 999976499--327999878875405857410686856886889998609-98999322665738768998652742011
Q gi|254780178|r 7 FNLKAVSGS--ARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLG-ADVILGNAYHLMLRPGAERIARLGGLHKF 83 (378)
Q Consensus 7 F~i~~~~~~--aR~G~L~t~~g~i~TP~flpv~t~g~v~~lt~~~l~~~g-~~~il~Ntyhl~~~pg~~~i~~~gGlh~f 83 (378)
|+++++++. ||+|.|.|+||.||||+||||+|-|+||+++|.+|++++ +++||+||||||||||.++|+++||||+|
T Consensus 1 f~~~~~~~~~~AR~G~l~~~HG~veTP~FMPVGTlgtvKgl~~~~l~~~~Ga~~iLaNTYHL~LRPG~~~v~~~GGLH~F 80 (415)
T TIGR00430 1 FELQKTDKHSNARVGKLNTPHGSVETPVFMPVGTLGTVKGLTPEELKATGGAELILANTYHLYLRPGEKIVKELGGLHKF 80 (415)
T ss_pred CEEECCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHCCCEEEEECHHHHHCCCHHHHHHHHCCCCCH
T ss_conf 90202357553515465368886436764751379730489989998743846744021333136818999984586001
Q ss_pred CCCCCCEEECCCCCCCCHHH----------------------HCCCCCCC----------CEEEECCCCCCEEEECHHHH
Q ss_conf 01577224114543210122----------------------10223333----------10210144541587129999
Q gi|254780178|r 84 IRWFKPILTDSGGFQVMSLS----------------------KLCSIDEQ----------GVRFRSHIDGSLYRVSPEES 131 (378)
Q Consensus 84 l~~~~~ilTDSGgfQv~sl~----------------------~~~~~~~~----------Gv~f~s~~dG~~~~ltpe~~ 131 (378)
|+|+|+|||||||||||||| +.++|+|+ ||.||||+||++++||||.+
T Consensus 81 m~w~g~iLTDSGGFQvFSLsfG~ehGvGkiannifleelree~lR~i~e~rkklavvtdrGV~Fk~p~dG~~~~ltPek~ 160 (415)
T TIGR00430 81 MQWDGPILTDSGGFQVFSLSFGMEHGVGKIANNIFLEELREEDLRKIEEERKKLAVVTDRGVHFKSPIDGSKIFLTPEKS 160 (415)
T ss_pred HCCCCCEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEECCCCCCCEEEECHHHH
T ss_conf 03587746406750231200001100357787788876314432001000221567634760435788887020185789
Q ss_pred HHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC---CCCEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 9998732897799601213322115899999998899999998851358---8860554023444366899998876422
Q gi|254780178|r 132 VHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQ---PGKALFGIVQGGDNINLRSFSAERLKEL 208 (378)
Q Consensus 132 i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~---~~~~lfgiVqGG~~~dLR~~Sa~~l~~~ 208 (378)
|++|..|||||+|+||+|||++++++++++|++||.|||++|+++|++. .+|+||||||||.|+|||++|++.|.++
T Consensus 161 ~~IQ~~LGSDIiM~fDeC~p~~ad~~~~~~s~~rt~rWA~~~l~~~~~~~~G~~~~LFgIvQGg~y~dLR~~S~~~L~~~ 240 (415)
T TIGR00430 161 MEIQYALGSDIIMAFDECTPYPADYDYAEKSTERTLRWAERCLEAHDRRKEGNKQALFGIVQGGTYEDLRSQSAKGLIEL 240 (415)
T ss_pred HHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHC
T ss_conf 99998628977987026887886578999999987999999998620247887775346870730488899999999861
Q ss_pred HHHHHHHHCC-CCCCCHHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCC--CC
Q ss_conf 2346766413-56751678998999898507703310025410189999998538983662000002332002456--21
Q gi|254780178|r 209 DLKGYAIGGL-AVGEPQEVMLHILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTR--FG 285 (378)
Q Consensus 209 ~~~G~aIgGl-~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t~--~g 285 (378)
||+||||||| |||||+++|.+||+++.|+||+||||||||||+|++|+.||..||||||||+|||.||||.+||. +|
T Consensus 241 df~GYAIGGLisVGEp~~~m~~il~~~~PLlP~dKPRYLMGvG~p~~l~~ai~~GiDmFDCV~PtR~aR~G~lfv~Pa~G 320 (415)
T TIGR00430 241 DFPGYAIGGLISVGEPKDDMLRILEHTAPLLPKDKPRYLMGVGTPEDLLDAIRRGIDMFDCVMPTRNARNGTLFVTPAEG 320 (415)
T ss_pred CCCCCEEECEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHCCCHHHHCCCCEEEEECCCC
T ss_conf 88950450324125888998889987503577768840205488899999998167410045201111583378632788
Q ss_pred -------CHHHHHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf -------0021012322368855986698133688989998868578508999999999999999999999999859989
Q gi|254780178|r 286 -------KINLRNARHIDDMRPLDAESHCSALRDYSRAYLHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFV 358 (378)
Q Consensus 286 -------~i~l~~~~~~~d~~pi~~~C~C~~C~~ytraYl~HL~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~ 358 (378)
+++|+|++|+.|.+|||++|+||||++|||||||||++++|+++.+|+|+|||+||.+||++||+||.|++|.
T Consensus 321 Gnvrnkf~~~ikNA~y~~D~~P~d~~C~Cy~Ck~YSRAYL~HL~r~~EllG~rL~s~HNl~f~~rL~~~iR~AI~~d~f~ 400 (415)
T TIGR00430 321 GNVRNKFRINIKNAKYKDDTRPVDEECDCYTCKNYSRAYLRHLIRAKELLGARLASLHNLHFLLRLMEKIRQAILEDRFL 400 (415)
T ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 62012136762464632477688877776314411278987888631799999977889999999999998875368733
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 9999999985327
Q gi|254780178|r 359 DFAMQTQENWKKG 371 (378)
Q Consensus 359 ~~~~~~~~~~~~~ 371 (378)
+|+++|+++|...
T Consensus 401 ~F~~~f~~~~g~~ 413 (415)
T TIGR00430 401 SFREEFLEKYGEE 413 (415)
T ss_pred CHHHHHHHHCCCC
T ss_conf 0589999972578
No 2
>PRK00112 tgt queuine tRNA-ribosyltransferase; Provisional
Probab=100.00 E-value=0 Score=969.72 Aligned_cols=365 Identities=56% Similarity=0.927 Sum_probs=359.7
Q ss_pred CCCEEEEEEECCCCEEEEEEECCEEEECCCEEECCCCCCCCCCCHHHHHHCCCCEEEEEHHHHHHCCCHHHHHHCCCCHH
Q ss_conf 87049999764993279998788754058574106868568868899986099899932266573876899865274201
Q gi|254780178|r 3 KNFHFNLKAVSGSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNAYHLMLRPGAERIARLGGLHK 82 (378)
Q Consensus 3 ~~~~F~i~~~~~~aR~G~L~t~~g~i~TP~flpv~t~g~v~~lt~~~l~~~g~~~il~Ntyhl~~~pg~~~i~~~gGlh~ 82 (378)
.+|+|||+++|++||+|+|.|+||+|+||+||||+|+|+||+++|++|+++|++++++||||||+|||.++++++||||+
T Consensus 1 ~~~~Fei~~~d~~AR~G~l~t~hg~i~TP~fmPVgt~~~vk~l~p~~l~~~g~~~il~NtYhl~lrpg~~~i~~~gGlH~ 80 (366)
T PRK00112 1 TMMKFELIKTDGRARRGRLTTPHGVVETPAFMPVGTYGTVKGMTPEELKETGAQIILGNTYHLWLRPGEEVIKKHGGLHK 80 (366)
T ss_pred CCEEEEEEECCCCCCEEEEEECCEEEECCEEEEEECCCCCCCCCHHHHHHHCCCEEEHHHHHHHHCCCHHHHHHHCCHHH
T ss_conf 94699996130761338998399146388160410556457679999998289999646668776774899987088787
Q ss_pred HCCCCCCEEECCCCCCCCHHHHCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHH
Q ss_conf 10157722411454321012210223333102101445415871299999998732897799601213322115899999
Q gi|254780178|r 83 FIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRA 162 (378)
Q Consensus 83 fl~~~~~ilTDSGgfQv~sl~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~s 162 (378)
||+|+|||||||||||++||++.++++++||+|+||+||+++++|||++|++|+.|||||+|+||+||+++++++++++|
T Consensus 81 fm~w~g~ilTDSGgfQv~Sl~~~~~i~e~Gv~F~s~~dG~~~~ltPE~~i~~Q~~iGsDI~m~lD~~~~~~~~~~~~~~a 160 (366)
T PRK00112 81 FMNWDGPILTDSGGFQVFSLSDLRKITEEGVTFRSHIDGSKHFLTPEKSMEIQYDLGSDIVMAFDECPPYPATYDYAKKS 160 (366)
T ss_pred HCCCCCCEEECCCCEEEEEECCCCEECCCCEEEECCCCCCEEECCHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHH
T ss_conf 62799981325760025672245343267069866768973664899999999961998799877567999889999999
Q ss_pred HHHHHHHHHHHHHHHCCC-CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 998899999998851358-8860554023444366899998876422234676641356751678998999898507703
Q gi|254780178|r 163 MELSLRWAERSLVAFGNQ-PGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVE 241 (378)
Q Consensus 163 v~rT~~w~~~~~~~~~~~-~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~ 241 (378)
|+||++|++||++++.+. ..|+||||||||.++|||++|++++.+++|+||||||+++||++++|.++|+++++.||++
T Consensus 161 ~~rT~rWa~r~~~~~~~~~~~q~lfgiVQGG~~~dLR~~Sa~~l~~~~f~G~aIGGlsvGe~~~~~~~il~~~~~~LP~~ 240 (366)
T PRK00112 161 MERTLRWAERSRDAHDRLENGQALFGIVQGGVYEDLREESAKGLVEIDFDGYAIGGLSVGEPKEEMYRILEHTAPLLPED 240 (366)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999860788753887415766799999999999848984885467456778999999999987448877
Q ss_pred HHEECCCCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHH
Q ss_conf 31002541018999999853898366200000233200245621002101232236885598669813368898999886
Q gi|254780178|r 242 RPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDAESHCSALRDYSRAYLHHL 321 (378)
Q Consensus 242 kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t~~g~i~l~~~~~~~d~~pi~~~C~C~~C~~ytraYl~HL 321 (378)
|||||||||+|++|+.+|++||||||||+|||+||||++||++|++||+|++|++|++|||++|+||+|++|||||||||
T Consensus 241 kPryLmGvG~P~~i~~~V~~GvD~FDcv~Ptr~AR~G~~~T~~G~l~l~~~~~~~D~~Pid~~C~C~~C~~ySraYLhhL 320 (366)
T PRK00112 241 KPRYLMGVGTPEDLVEGVARGVDMFDCVMPTRNARNGTLFTSFGRLNIRNAKYKDDTRPLDPECDCYTCRNYSRAYLHHL 320 (366)
T ss_pred CCEEEECCCCHHHHHHHHHHCCCCHHCCCCHHHHHCCCEECCCCEEEECCCHHCCCCCCCCCCCCCHHHCCCCHHHHHHH
T ss_conf 75565358998999999993898111254057771584645698588231221168998798999934460499999777
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 8578508999999999999999999999999859989999999998
Q gi|254780178|r 322 LRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQEN 367 (378)
Q Consensus 322 ~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~~~~ 367 (378)
++++|+++++||++|||+||.+||++||+||++|+|++|+++|+++
T Consensus 321 ~k~~E~l~~~Llt~HNL~~~~~l~~~iR~aI~~g~f~e~~~~~l~~ 366 (366)
T PRK00112 321 FRAGEILGARLLTIHNLHYYQRLMEEIREAIEEGRFLEFRAEFLAR 366 (366)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
T ss_conf 3079568999999999999999999999999859899999999729
No 3
>COG0343 Tgt Queuine/archaeosine tRNA-ribosyltransferase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=0 Score=921.51 Aligned_cols=369 Identities=55% Similarity=0.898 Sum_probs=364.1
Q ss_pred EEEEEECCCCEEEEEEECCEEEECCCEEECCCCCCCCCCCHHHHHHCCCCEEEEEHHHHHHCCCHHHHHHCCCCHHHCCC
Q ss_conf 99997649932799987887540585741068685688688999860998999322665738768998652742011015
Q gi|254780178|r 7 FNLKAVSGSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNAYHLMLRPGAERIARLGGLHKFIRW 86 (378)
Q Consensus 7 F~i~~~~~~aR~G~L~t~~g~i~TP~flpv~t~g~v~~lt~~~l~~~g~~~il~Ntyhl~~~pg~~~i~~~gGlh~fl~~ 86 (378)
|+++++|++||+|+|.|+||+||||+||||+|.|+||+++|++|+++|++++|+||||||+|||.+.++..||||+||+|
T Consensus 1 f~~~~~d~~aR~G~l~t~hg~ieTP~FmPVgt~~~vk~~~~~~l~~~ga~iil~NtYhl~lrpg~e~i~~~gGlH~f~~w 80 (372)
T COG0343 1 FEILAKDGGARVGRLETPHGVIETPAFMPVGTNGTVKGMTPEELKELGAQIILTNTYHLYLRPGLEIVALLGGLHKFMGW 80 (372)
T ss_pred CEEECCCCCEEEEEEECCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCEEEECEEEEEECCCHHHHHHCCCHHHHHCC
T ss_conf 92224689735789971897452781652565454556799999865998895121311008852688870787888648
Q ss_pred CCCEEECCCCCCCCHHHHCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHH
Q ss_conf 77224114543210122102233331021014454158712999999987328977996012133221158999999988
Q gi|254780178|r 87 FKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELS 166 (378)
Q Consensus 87 ~~~ilTDSGgfQv~sl~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT 166 (378)
++||||||||||++||++.++++++||.|+||+||+++++|||++|++|+.|||||+|+||+|||++++++++++||+||
T Consensus 81 ~~pilTDSGgFQv~sL~~~~~~~e~gv~f~s~~dG~k~~~tpe~s~~iQ~~lGsDI~m~lDe~~~~~a~~~~a~~s~erT 160 (372)
T COG0343 81 DGPILTDSGGFQVFSLGDLRKITEEGVTFKSHIDGSKVFLTPEESMEIQKDLGSDIIMILDECTPPPADREYAEKSVERT 160 (372)
T ss_pred CCCEEECCCCEEEEECCCCCCCCCCCCEEECCCCCCEEECCCHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 99725357760578744333332244033124677503238099999999848966555475999998699999999999
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEEC
Q ss_conf 99999998851358886055402344436689999887642223467664135675167899899989850770331002
Q gi|254780178|r 167 LRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYL 246 (378)
Q Consensus 167 ~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l 246 (378)
.|||+||++++++..+|+||||||||.|+|||++||+.+.+++|+||||||+++||++++|.+++.++.+.||++|||||
T Consensus 161 ~rwa~r~~~~~~~~~~~~lfgivQGg~y~dLR~~sa~~l~~l~f~gyaIGGl~vge~~~~m~~il~~~~~~Lp~~kPryL 240 (372)
T COG0343 161 LRWAERSLEAHKRLNDQALFGIVQGGTYEDLRRRSAEELNELDFDGYAIGGLSVGEPKEDMVRILEATKPLLPEDKPRYL 240 (372)
T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEE
T ss_conf 99999999987466776588742387768799999999973799853405856787789999999986400899998775
Q ss_pred CCCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHHHHCCC
Q ss_conf 54101899999985389836620000023320024562100210123223688559866981336889899988685785
Q gi|254780178|r 247 MGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDAESHCSALRDYSRAYLHHLLRVNE 326 (378)
Q Consensus 247 ~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t~~g~i~l~~~~~~~d~~pi~~~C~C~~C~~ytraYl~HL~~~~E 326 (378)
||+|+|++|+.+|++||||||||+|||+||+|+++|.+|.+||++++|++|++||+++|+||+|++|||||+|||++++|
T Consensus 241 mGvG~P~~i~~aV~~GvDmFDcv~ptr~aR~g~~~t~~G~~~i~~~k~~~d~~pld~~C~C~~C~~ysRayl~hL~~~~e 320 (372)
T COG0343 241 MGVGHPEDIVEAVALGVDMFDCVMPTRYARNGRLLTRDGRVNIRNAKLAEDTRPLDEPCSCPTCRNYSRAYLRHLRRANE 320 (372)
T ss_pred ECCCCHHHHHHHHHHCCCHHHCCCHHHHCCCCCEEEECCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCH
T ss_conf 56879899999999487324235135530579478505851102144654078879998881127854016999974656
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 0899999999999999999999999985998999999999853279986
Q gi|254780178|r 327 SLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQENWKKGDIPP 375 (378)
Q Consensus 327 ~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~~~~~~~~~~~~ 375 (378)
+++++|+++||||+|+++|++||+||++|+|++|+++|.+.|..+..+.
T Consensus 321 ~~~~~L~t~HNL~~~~~lm~~iR~AI~eg~f~e~~~~~~~~~~~~~~~~ 369 (372)
T COG0343 321 ELGARLLTIHNLYFYLRLMKEIRQAIKEGRFLEFVEEFAEKHPRLLPAY 369 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCC
T ss_conf 8899999999999999999999998854978999999999643356655
No 4
>PRK01008 queuine tRNA-ribosyltransferase; Provisional
Probab=100.00 E-value=0 Score=907.38 Aligned_cols=349 Identities=38% Similarity=0.643 Sum_probs=338.2
Q ss_pred CCEEEEEEEC--CCCEEEEEEECCEEEECCCEEECCCCCCCCCCCHHHHHHCCCCEEEEEHHHHHHCCCHHHHHHCCCCH
Q ss_conf 7049999764--99327999878875405857410686856886889998609989993226657387689986527420
Q gi|254780178|r 4 NFHFNLKAVS--GSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNAYHLMLRPGAERIARLGGLH 81 (378)
Q Consensus 4 ~~~F~i~~~~--~~aR~G~L~t~~g~i~TP~flpv~t~g~v~~lt~~~l~~~g~~~il~Ntyhl~~~pg~~~i~~~gGlh 81 (378)
.|+|+|++++ ++||+|+|.|+||+|+||+||||+|+|+||++ ++++|+|++|+|||||+++||.++|+++||||
T Consensus 2 ~~~Fei~~~~~~~~AR~G~l~t~hG~i~TP~fmPV~T~~~vk~~----l~~~g~~~il~NtYHL~lrpG~~~i~~~gGlH 77 (372)
T PRK01008 2 ALKFELIHQSKKSRARVGRIETAHGIIDTPAFVPVATNGALKGV----LDHSNIPLMFCNTYHLLVHPGTEAVAAMGGLH 77 (372)
T ss_pred CEEEEEEEECCCCCEEEEEEEECCEEEECCCEEEECCCCCCHHH----HHHCCCCEEECHHHHHHHCCCHHHHHHCCCHH
T ss_conf 44899984079986525999859906618927550266523203----76549998810566887687588998738714
Q ss_pred HHCCCCCCEEECCCCCCCCHHH------------------HCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEE
Q ss_conf 1101577224114543210122------------------1022333310210144541587129999999873289779
Q gi|254780178|r 82 KFIRWFKPILTDSGGFQVMSLS------------------KLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQ 143 (378)
Q Consensus 82 ~fl~~~~~ilTDSGgfQv~sl~------------------~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~ 143 (378)
+||+|++||||||||||++||. +..+|+++||.|+||+||+++++|||++|++|+.|||||+
T Consensus 78 ~fm~w~~pilTDSGGfQv~SL~~g~v~~e~~~~~~~~~~~~l~~ite~Gv~F~s~~dG~~~~ltPE~~i~~Q~~iGsDI~ 157 (372)
T PRK01008 78 QFIGRNAPIITDSGGFQIFSLAYGSVAEEIKSCGKKKGGSSILKITDEGVWFKSYRDGRKLFLSPEVSVQAQKDLGADII 157 (372)
T ss_pred HHCCCCCCEEECCCCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHHCCCEE
T ss_conf 43169987433378632566303640122102233234344442135724775577896244289999999997489889
Q ss_pred EEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9601213322115899999998899999998851358-886055402344436689999887642223467664135675
Q gi|254780178|r 144 MQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQ-PGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGE 222 (378)
Q Consensus 144 ~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~-~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge 222 (378)
|+||+|++++++++++++|++||++|++||++++... .+|+||||||||.++|||++|++++.+++|+|||||| ++||
T Consensus 158 m~lD~~~~~~~~~~~~~~s~~rT~rW~~r~~~~~~~~~~~q~lfgIVQGG~~~dLR~~sa~~l~~~~fdGyaIGG-svge 236 (372)
T PRK01008 158 IPLDELLPFHTDPTYFLQSCSRTYVWEKRSLDYHLKNPRHQSMYGVIHGGIDPDQRKIGCAFVEDLPFDGSAIGG-SLGK 236 (372)
T ss_pred EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEECC-CCCC
T ss_conf 987878899977999999999999999999999852975526874246788799999999998627985388666-5765
Q ss_pred CHHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCC
Q ss_conf 16789989998985077033100254101899999985389836620000023320024562100210123223688559
Q gi|254780178|r 223 PQEVMLHILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLD 302 (378)
Q Consensus 223 ~~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t~~g~i~l~~~~~~~d~~pi~ 302 (378)
++++|.++|.++.+.||++|||||||+|+|++|+.+|++||||||||+|||+||||++||++|++||++++|++|++|||
T Consensus 237 ~~~~~~~il~~~~~~LP~~kPRyLmGvG~p~~i~~~V~~GvDmFDcv~Ptr~AR~G~~~t~~G~~~i~~~~y~~D~~Pid 316 (372)
T PRK01008 237 NLQEMVEVVDITTSNLSKERPVHLLGIGDLPSIWATVGFGIDSFDSSYPTKAARHGLILTSQGPLKINNQRYSSDLNPIE 316 (372)
T ss_pred CHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCHHHCCHHHHHHCCCEEEECCCEEECCCHHHCCCCCCCC
T ss_conf 79999999999984689998758705898799999998098554433526866276698038707717334235899879
Q ss_pred CCCCCHHH-CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 86698133-68898999886857850899999999999999999999999985998
Q gi|254780178|r 303 AESHCSAL-RDYSRAYLHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCF 357 (378)
Q Consensus 303 ~~C~C~~C-~~ytraYl~HL~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f 357 (378)
++|+|||| ++|||||||||++++|+++++||++|||+||.+||++||+||++|++
T Consensus 317 ~~C~C~tC~~~ySraYL~HL~~~~E~l~~~LltiHNl~~~~~lm~~iR~aI~~~~l 372 (372)
T PRK01008 317 PGCSCLACSSGISRAYLRHLFKVHEPNAGIWASIHNLHHMQQVMKEIREQILNDEI 372 (372)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 49999766998889999998768947999999999999999999999999974899
No 5
>KOG3908 consensus
Probab=100.00 E-value=0 Score=775.76 Aligned_cols=372 Identities=40% Similarity=0.717 Sum_probs=362.3
Q ss_pred CEEEEEEEC--CCCEEEEEEECCEEEECCCEEECCCCCCCCCCCHHHHHHCCCCEEEEEHHHHHHCCCHHHHHHCCCCHH
Q ss_conf 049999764--993279998788754058574106868568868899986099899932266573876899865274201
Q gi|254780178|r 5 FHFNLKAVS--GSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNAYHLMLRPGAERIARLGGLHK 82 (378)
Q Consensus 5 ~~F~i~~~~--~~aR~G~L~t~~g~i~TP~flpv~t~g~v~~lt~~~l~~~g~~~il~Ntyhl~~~pg~~~i~~~gGlh~ 82 (378)
+.|++.++. ++||+|.|.++|+.++||.||||+|.|++|++.|++|.++|++++|.|||||-+|||.+.++++||+|+
T Consensus 8 ~~~kvvarcs~t~AR~g~l~Lph~~vetPVFMPVGTqgtmKGI~peqL~~l~Cri~L~NTYHLGlrPG~E~~k~agGlh~ 87 (396)
T KOG3908 8 LDFKVVARCSTTRARVGTLELPHSSVETPVFMPVGTQGTMKGIVPEQLDELGCRILLGNTYHLGLRPGHELLKKAGGLHK 87 (396)
T ss_pred HHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCEEEECCCEECCCCCCHHHHHHCCCHHH
T ss_conf 02224434134411003455378630355235324411125656889876288788336111256771888875113676
Q ss_pred HCCCCCCEEECCCCCCCCHHHHCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHH
Q ss_conf 10157722411454321012210223333102101445415871299999998732897799601213322115899999
Q gi|254780178|r 83 FIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRA 162 (378)
Q Consensus 83 fl~~~~~ilTDSGgfQv~sl~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~s 162 (378)
||+|+..|||||||||+.||.++..++|+||+|+|+.||+...||||.+|++|.+||+||+|.|||.+......++.+.|
T Consensus 88 fm~wnr~iLTDSGGFQmvSL~~l~~vtE~GV~F~SP~dg~~~lltPE~Si~iQnalG~DImMQLDdVV~~~ttg~rveeA 167 (396)
T KOG3908 88 FMNWNRNILTDSGGFQMVSLLKLATVTEDGVRFRSPHDGEDMLLTPEKSIEIQNALGADIMMQLDDVVHTLTTGPRVEEA 167 (396)
T ss_pred HHCCCHHHEECCCCEEEEEECCEEEECCCCEEECCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 73385421415887079760010264357625348989974134821207998774511645530300116776179999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 99889999999885135888605540234443668999988764222346766413567516789989998985077033
Q gi|254780178|r 163 MELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVER 242 (378)
Q Consensus 163 v~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~k 242 (378)
+.||+||++||+.+|.+.+.|+||+|||||++.+||++|++++.+++..|+|||||+.||++.+++++|..++..||++|
T Consensus 168 M~RsIRWlDRCi~Ah~R~d~Q~lFpIiQGGLd~~LR~~c~~em~kR~~~G~AiGGLSGGEeK~~Fwr~V~~ct~~LP~dk 247 (396)
T KOG3908 168 MYRSIRWLDRCIMAHNRDDEQNLFPIIQGGLDEGLRAECIAEMLKRSVPGIAIGGLSGGEEKSEFWRMVAFCTSSLPPDK 247 (396)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 99888999999987558641001123215666678999999998427885574056787218799999999972289998
Q ss_pred HEECCCCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHHH
Q ss_conf 10025410189999998538983662000002332002456210021012322368855986698133688989998868
Q gi|254780178|r 243 PHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDAESHCSALRDYSRAYLHHLL 322 (378)
Q Consensus 243 Pr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t~~g~i~l~~~~~~~d~~pi~~~C~C~~C~~ytraYl~HL~ 322 (378)
||||||||.|+|++.+|++|+||||||||||.||.|.++++.|.+++++.+|+.|+.|||+.|.|+||++|||||||+|.
T Consensus 248 PRYlMGVGya~DlVVCvaLG~DMfDCVyPTRTARFG~alv~~G~~~l~~~k~k~D~~pid~~C~C~tC~~ytRaylh~l~ 327 (396)
T KOG3908 248 PRYLMGVGYAEDLVVCVALGSDMFDCVYPTRTARFGKALVDSGDLQLRQKKYKSDFGPIDETCGCPTCKKYTRAYLHALV 327 (396)
T ss_pred CCEEECCCCCCCEEEEEHHCCCHHHCCCCCCHHHHCCCCCCCCCEEECCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 73122167602056540007743321464404330434156653231315555214677899898124567899999970
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCCCCCC
Q ss_conf 578508999999999999999999999999859989999999998532--7998665
Q gi|254780178|r 323 RVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQENWKK--GDIPPIF 377 (378)
Q Consensus 323 ~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~~~~~~~--~~~~~~~ 377 (378)
. +|..+..|+++||+++..++|+.+|+||.+++|.+|+++|+..|.+ .+.|.|-
T Consensus 328 ~-~etv~~~lltiHNi~yql~Lmr~vResI~~d~fp~Fvk~Fm~~~~~D~~~~p~w~ 383 (396)
T KOG3908 328 G-KETVGCHLLTIHNIAYQLQLMRDVRESIQEDRFPQFVKNFMASRFKDSREVPAWA 383 (396)
T ss_pred C-CCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
T ss_conf 3-6532224554026999999999999998662269999999999818975484899
No 6
>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=100.00 E-value=0 Score=694.83 Aligned_cols=327 Identities=24% Similarity=0.389 Sum_probs=305.2
Q ss_pred CEEEEEEECCCCEEEEEEECCEEEECCCEEECCCCCCCCCCCHHHHHHCCCCEEEEEHHHHHHCCCHHHHHHCCCCHHHC
Q ss_conf 04999976499327999878875405857410686856886889998609989993226657387689986527420110
Q gi|254780178|r 5 FHFNLKAVSGSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNAYHLMLRPGAERIARLGGLHKFI 84 (378)
Q Consensus 5 ~~F~i~~~~~~aR~G~L~t~~g~i~TP~flpv~t~g~v~~lt~~~l~~~g~~~il~Ntyhl~~~pg~~~i~~~gGlh~fl 84 (378)
..|||+++|++||+|+|+|+||+|+||+|||| +.++++.++|++|+++|++++|+||||+|++||.+++++ |||+||
T Consensus 1 ~~FEI~~~D~~aRiG~L~T~hG~IeTP~fmPV-inp~vk~i~p~el~~~Ga~iIItNtY~l~~rpg~~a~~~--GLH~fm 77 (486)
T PRK13533 1 GVFEIRDKDLAGRIGKLYTPHGVVETPALFPV-INPHKQEIPPEELKEFGFEALITNSYIIYRSERERALEK--GLHELL 77 (486)
T ss_pred CCCEEEECCCCCCEEEEECCCCEEECCCCCCC-CCCCCCCCCHHHHHHHCCCEEEEECCCEECCCCHHHHHC--CHHHHC
T ss_conf 96568733576023789708946607853235-277457118999998179899310110002760667760--708760
Q ss_pred CCCCCEEECCCCCCCCHHHHCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHH
Q ss_conf 15772241145432101221022333310210144541587129999999873289779960121332211589999999
Q gi|254780178|r 85 RWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAME 164 (378)
Q Consensus 85 ~~~~~ilTDSGgfQv~sl~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~ 164 (378)
+|+|||||||||||++++|++ .+|||++|++|+.||+||+|+||.||++++++++++++++
T Consensus 78 ~wdgpImTDSGgFQv~~yG~V-------------------evtpeeiv~fQ~~IGSDI~m~lD~~t~~~~~~e~A~~sve 138 (486)
T PRK13533 78 GFDGVIMTDSGSYQLLVYGSV-------------------EVTNEEILEFQRKIGSDIGVPLDIPTGPDADREEAEEEVE 138 (486)
T ss_pred CCCCCEEECCCCCEEEECCCE-------------------ECCHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 999973766887643563878-------------------4268999999998499889988618996999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCH--HHHHHHHHHHHHCCCHH
Q ss_conf 88999999988513588860554023444366899998876422234676641356-7516--78998999898507703
Q gi|254780178|r 165 LSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAV-GEPQ--EVMLHILSNVLPILPVE 241 (378)
Q Consensus 165 rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~-ge~~--~~~~~ii~~~~~~LP~~ 241 (378)
+|.+|+++|.+.+++ .+|+||||||||.|+|||++||+++.+++|+||||||+.. .|+. .++.++|..++..||++
T Consensus 139 ~T~rrak~a~~~~~~-~~~~l~GpVQGg~y~DLR~~SA~~l~~l~FdgyaIGgvvplme~yry~~l~~~i~~ak~~lp~~ 217 (486)
T PRK13533 139 ETLERAEEAAALIKD-DDMLWVGPVQGGTYPDLRERSAREASKLGFDIYPLGSPTPLMESYRYDELVDVVLAAKSGLSPG 217 (486)
T ss_pred HHHHHHHHHHHHHCC-CCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEECCCCCHHHHHHCCHHHHHHHHHHHHHCCCCC
T ss_conf 999999999986367-7877886316878699999999999868998705788718877614799999999997229999
Q ss_pred HHEECCCCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHH
Q ss_conf 31002541018999999853898366200000233200245621002101232236885598669813368898999886
Q gi|254780178|r 242 RPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDAESHCSALRDYSRAYLHHL 321 (378)
Q Consensus 242 kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t~~g~i~l~~~~~~~d~~pi~~~C~C~~C~~ytraYl~HL 321 (378)
+|+||||+|||+.++.+|++|+|+|||++|+.+||+|+++|..|+.+|.+..|. +|+|++|++||...|+.|
T Consensus 218 ~PvHlFGaGHPm~f~lavAlG~DlFDSAsYalyArd~Rylt~~gT~~L~~l~~~--------Pc~cpvc~~ytp~el~~m 289 (486)
T PRK13533 218 APVHLFGAGHPMMFALAVALGCDLFDSASYALYARDGRYITRDGTYRLEDLEYL--------PCSCPVCSRYTPKELREM 289 (486)
T ss_pred CCEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCEECCCCCCCHHHCCCC--------CCCCCCCCCCCHHHHHHC
T ss_conf 971541588477899999957671436889988537946776666205431153--------667750367898999727
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 85785089999999999999999999999998599899999999
Q gi|254780178|r 322 LRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQ 365 (378)
Q Consensus 322 ~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~~ 365 (378)
.+-....||+.|||+....++++|||||++|++|+|+++--
T Consensus 290 ---~~~er~~llA~HNL~v~~~Ei~~ikqaI~eg~Lwelve~r~ 330 (486)
T PRK13533 290 ---PREERTRLLALHNLYVLFEEIRRIKQAIKEGRLWELVEERA 330 (486)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf ---88789999999889999999999999987395999999997
No 7
>PRK13534 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=100.00 E-value=0 Score=635.75 Aligned_cols=324 Identities=25% Similarity=0.383 Sum_probs=304.0
Q ss_pred EEEEEEECCCCEEEEEEECCEEEECCCEEECCCCCCCCCCCHHHHHHCCCCEEEEEHHHHHHCCCHHHHHHCCCCHHHCC
Q ss_conf 49999764993279998788754058574106868568868899986099899932266573876899865274201101
Q gi|254780178|r 6 HFNLKAVSGSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNAYHLMLRPGAERIARLGGLHKFIR 85 (378)
Q Consensus 6 ~F~i~~~~~~aR~G~L~t~~g~i~TP~flpv~t~g~v~~lt~~~l~~~g~~~il~Ntyhl~~~pg~~~i~~~gGlh~fl~ 85 (378)
.|||.++|++||+|+|.|+||+||||+||||+ .+.++.++|++|+++|+++++||+||+|++|+.+..+..+|||+||+
T Consensus 1 mFEI~~~D~agRiG~L~t~~g~ieTP~~~PVi-np~~~~i~p~el~~~G~~~iITNsYi~~~~~~~~~~a~~~GlH~~l~ 79 (630)
T PRK13534 1 MFEIKARDALGRIGKLKTNGKKIETPTIMPVI-NPKKQTVDPKELKKMGFDIVITNSYIIYKNPELREKALEKGIHSLID 79 (630)
T ss_pred CCCEEECCCCCCEEEEECCCCCEECCCCCCCC-CCCCCCCCHHHHHHCCCCEEEEEEEEEEECCCHHHHHHHHCHHHHCC
T ss_conf 96046235661237897489626468310204-65536349999986186589750057750762346666404798718
Q ss_pred CCCCEEECCCCCCCCHHHHCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHH
Q ss_conf 57722411454321012210223333102101445415871299999998732897799601213322115899999998
Q gi|254780178|r 86 WFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMEL 165 (378)
Q Consensus 86 ~~~~ilTDSGgfQv~sl~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~r 165 (378)
|+|+|||||||||++++|++ .++|++++++|++||+||+++||.||++++++++++++|+.
T Consensus 80 ~dg~ImTDSG~fQ~~~yG~v-------------------ev~~~eiv~fQ~~IGsDI~~~LD~pt~p~~~~e~a~~~v~~ 140 (630)
T PRK13534 80 FDGPIMTDSGSFQLSVYGDV-------------------EVTNREIIEFQEKIGVDIGTILDIPTPPDVSREKAEEDLEE 140 (630)
T ss_pred CCCCEEECCCCEEEEEECCE-------------------EECHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 99857977886377773766-------------------20699999999985799888757789989899999999999
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCH--HHHHHHHHHHHHCCCHHH
Q ss_conf 899999998851358886055402344436689999887642223467664135-67516--789989998985077033
Q gi|254780178|r 166 SLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLA-VGEPQ--EVMLHILSNVLPILPVER 242 (378)
Q Consensus 166 T~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~-~ge~~--~~~~~ii~~~~~~LP~~k 242 (378)
|.+|++++.+. .++.|+||||||.|+|||++||+++.+++|++|+|||.. +.|+. .++.++|-.++..||+++
T Consensus 141 T~~R~~ea~~~----~~~~l~gpvQGg~y~DLr~~sa~~~~~~~f~~y~iG~~vplme~yry~~l~~~i~~~k~~lp~~~ 216 (630)
T PRK13534 141 TLERAKEAIEI----RELALNGTVQGSTYPDLRRKSAELMSKMNFDIYPIGAVVPLMESYRYRDLVDIIINSKMHLPTNK 216 (630)
T ss_pred HHHHHHHHHHH----HCCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCHHHHHCCHHHHHHHHHHHHHCCCCCC
T ss_conf 99999986520----13646325568872889999999987479877634885056554258999999999973499998
Q ss_pred HEECCCCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHHH
Q ss_conf 10025410189999998538983662000002332002456210021012322368855986698133688989998868
Q gi|254780178|r 243 PHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDAESHCSALRDYSRAYLHHLL 322 (378)
Q Consensus 243 Pr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t~~g~i~l~~~~~~~d~~pi~~~C~C~~C~~ytraYl~HL~ 322 (378)
|+||||+|||+.++.+|++|+|+|||+.|..+||+|+++|..|+.+|.+..+. +|+|++|.+||.+.|+.|-
T Consensus 217 pvHlfG~GhP~~~~~avalG~DlFDsaay~lyA~d~rylt~~gt~~l~~l~~~--------Pc~c~~c~~~tp~el~~m~ 288 (630)
T PRK13534 217 PVHLFGAGHPMFFALAVALGCDLFDSASYALYAKDDRYLTPEGTLHLEDLKEF--------PCSCPVCSEYTPKELREMP 288 (630)
T ss_pred CEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCEECCCCCEEHHHHCCC--------CCCCCCCCCCCHHHHHHCC
T ss_conf 60237888767889999957660205789987148807876444027760027--------7536552657989997388
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 578508999999999999999999999999859989999999
Q gi|254780178|r 323 RVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQT 364 (378)
Q Consensus 323 ~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~ 364 (378)
+. ....||+.|||+...++++++|++|++|++|+|+++-
T Consensus 289 ~~---er~~llA~HNL~v~~~Ei~~vrqaI~~G~L~e~ve~r 327 (630)
T PRK13534 289 KE---ERTRLLAEHNLYVIFEEINRIKQAIKEGNLWELVEER 327 (630)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 87---8999999867999999999999999748299999998
No 8
>pfam01702 TGT Queuine tRNA-ribosyltransferase. This is a family of queuine tRNA-ribosyltransferases EC:2.4.2.29, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine. It catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues.
Probab=100.00 E-value=0 Score=577.34 Aligned_cols=238 Identities=55% Similarity=0.895 Sum_probs=234.1
Q ss_pred HHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999987328977996012133221158999999988999999988513588860554023444366899998876422
Q gi|254780178|r 129 EESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKEL 208 (378)
Q Consensus 129 e~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~ 208 (378)
|++|++|+.|||||+|+||+|||++++++++++||+||++|+++|++++++.++|.||||||||.++|||++|++++.++
T Consensus 1 e~~i~~q~~igsDI~~~lD~~~~~~~~~~~~~~av~rT~~w~~r~~~~~~~~~~~~lfgivqGG~~~dlR~~s~~~l~~~ 80 (238)
T pfam01702 1 EESIEIQNKLGSDIIMPLDECTPYPASRERAEKSVERTLRWADRCLEAHKEKSGQALFGIVQGGLYEDLREESAEELAEL 80 (238)
T ss_pred CCHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCC
T ss_conf 91999999869988998660799899999999999999999999999985488886996157979899999999997448
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCCCCHH
Q ss_conf 23467664135675167899899989850770331002541018999999853898366200000233200245621002
Q gi|254780178|r 209 DLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKIN 288 (378)
Q Consensus 209 ~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t~~g~i~ 288 (378)
+|+||+|||+++||+++++.++++.+.+.||++|||||||+|+|++|+.+|++|||||||++|+|+||+|+|||++|++|
T Consensus 81 ~~~GyaIgGl~~ge~~~~~~~~l~~~~~~Lp~~kPr~l~G~g~P~~i~~~v~~GiD~FD~~~ptr~Ar~G~alt~~g~~n 160 (238)
T pfam01702 81 DFDGYAIGGLSVGEEKEEMLELVDAVTPLLPEDKPRYLMGVGTPEDILEAVALGVDMFDCVFPTRYARNGRALTFDGTIN 160 (238)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHCCCCEECCCHHHHHHCCEEEECCCCEE
T ss_conf 99879856877788999999999999855887785640699999999999995888100341379984692784488310
Q ss_pred HHHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 101232236885598669813368898999886857850899999999999999999999999985998999999999
Q gi|254780178|r 289 LRNARHIDDMRPLDAESHCSALRDYSRAYLHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQE 366 (378)
Q Consensus 289 l~~~~~~~d~~pi~~~C~C~~C~~ytraYl~HL~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~~~ 366 (378)
|++.+|+.|++||+++|+|++|++|||||||||++++|++|++||++|||++|.+||++||+||++|+|++|+++|.+
T Consensus 161 l~~~~~~~D~~pl~~~C~C~~C~~~sraYl~HL~~~~E~l~~~Llt~HNl~~~~~~~~~iR~aI~~g~~~e~~~~~~~ 238 (238)
T pfam01702 161 LKNARYKLDFRPLDPPCDCYTCRNYSRAYLHHLLKAKEMLGSRLLTIHNLHYYLRLMREIREAIEEGTFEEFVEEFLR 238 (238)
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC
T ss_conf 301333467876679999832231379999988644635899999999999999999999999985999999999849
No 9
>TIGR00432 arcsn_tRNA_tgt archaeosine tRNA-ribosyltransferase; InterPro: IPR004804 The archaeosine tRNA-guanine transglycosylase (tgt) differs from the tgt of Escherichia coli and other bacteria in the site of action and the modification that results. It exchanges 7-cyano-7-deazaguanine (preQ0) with guanine at position 15 of archaeal tRNA; this nucleotide is subsequently converted to archaeosine, found exclusively in the archaea. In contrast, bacterial tgt catalyzes the exchange of preQ0 or preQ1 for the guanine base at position 34; this nucleotide is subsequently modified to queuosine (IPR004803 from INTERPRO). Archaeoglobus fulgidus has both enzymes. .
Probab=100.00 E-value=0 Score=581.85 Aligned_cols=332 Identities=23% Similarity=0.402 Sum_probs=306.0
Q ss_pred EEEEEECCCCEEEEEEECCEEEECCCEEECCCCCCCCCCCHHHHHHCCCCEEEEEHHHHHHCCCHHHHHHCCCCHHHCCC
Q ss_conf 99997649932799987887540585741068685688688999860998999322665738768998652742011015
Q gi|254780178|r 7 FNLKAVSGSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNAYHLMLRPGAERIARLGGLHKFIRW 86 (378)
Q Consensus 7 F~i~~~~~~aR~G~L~t~~g~i~TP~flpv~t~g~v~~lt~~~l~~~g~~~il~Ntyhl~~~pg~~~i~~~gGlh~fl~~ 86 (378)
|||+++|+.+|+|.|.|+||.|+||+.|||..+| ++.+-.++++..|+|+++||+|++|..|..+.-+-..|+|+.+.+
T Consensus 1 FEI~~KD~lGR~~~~~T~HG~~~TP~~lPVI~P~-~~~Irae~~K~~GA~~VITN~YIIYR~PelRE~AL~~GVH~~~~~ 79 (658)
T TIGR00432 1 FEIKDKDALGRIGILKTEHGRVRTPALLPVINPN-KQFIRAEDVKKFGAEIVITNAYIIYRSPELRERALEDGVHRLLDF 79 (658)
T ss_pred CCCCCCCCCCCEEEEECCCCCEECCEECCEECCC-CCEEEHHCCCCCCCCEEEECEEEEECCHHHHHHHHHCCCCEEECC
T ss_conf 9654545665226776699713367041036689-862521012677762798320667548135889863476444207
Q ss_pred CCCEEECCCCCCCCHHHHCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHH
Q ss_conf 77224114543210122102233331021014454158712999999987328977996012133221158999999988
Q gi|254780178|r 87 FKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELS 166 (378)
Q Consensus 87 ~~~ilTDSGgfQv~sl~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT 166 (378)
|+|||||||+||...||++ ++.+-++|+||+.||+||+++||.+|||+.+++++++-++.|
T Consensus 80 D~P~MTDSGSyQL~~YGD~-------------------E~~N~EIieFQ~~IG~Digt~LDIPTPPdvd~~rA~~ele~T 140 (658)
T TIGR00432 80 DGPVMTDSGSYQLSVYGDV-------------------EVKNAEIIEFQERIGSDIGTSLDIPTPPDVDRERAEEELEVT 140 (658)
T ss_pred CCCEEECCCCEEECCCCCE-------------------EEECCHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 8864305763110111556-------------------630604565453338725775678622764678899999998
Q ss_pred HHHHHHHHHHHCCC-CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCH--HHHHHHHHHHHHCCCHHH
Q ss_conf 99999998851358-88605540234443668999988764222346766413-567516--789989998985077033
Q gi|254780178|r 167 LRWAERSLVAFGNQ-PGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGL-AVGEPQ--EVMLHILSNVLPILPVER 242 (378)
Q Consensus 167 ~~w~~~~~~~~~~~-~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl-~~ge~~--~~~~~ii~~~~~~LP~~k 242 (378)
+++++++++..+.. -...|.++|||.+|+|||+.||+++++++++-|.||.+ ++.|.. -++.++|-.+...||..+
T Consensus 141 LeRaresiEl~e~rG~~~lLn~~VQGSThpDLRr~~A~e~aklg~diyPIGAVVPLMe~YRyRdla~~il~s~s~LP~~~ 220 (658)
T TIGR00432 141 LERARESIELKEERGAKLLLNAVVQGSTHPDLRRYAAKELAKLGVDIYPIGAVVPLMEAYRYRDLAEVILESKSELPTSK 220 (658)
T ss_pred HHHHHHHHHHHHHCCHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 89888768876410413332312266554668999999998589715124653056223324777666653110475788
Q ss_pred HEECCCCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHHH
Q ss_conf 10025410189999998538983662000002332002456210021012322368855986698133688989998868
Q gi|254780178|r 243 PHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDAESHCSALRDYSRAYLHHLL 322 (378)
Q Consensus 243 Pr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t~~g~i~l~~~~~~~d~~pi~~~C~C~~C~~ytraYl~HL~ 322 (378)
|+||||||||+.++.||++|+|+|||+.|+.||++.++||..|+.+|.+.+-...| +|+|++|++||+..|.-|-
T Consensus 221 P~HLfGcGHPMlFAlAValGCDLFDSAAYaLYAkDDRyLt~~GT~kLee~~dL~~f-----PCsCpVCs~ytP~EL~~m~ 295 (658)
T TIGR00432 221 PVHLFGCGHPMLFALAVALGCDLFDSAAYALYAKDDRYLTVEGTLKLEELKDLKEF-----PCSCPVCSDYTPEELASME 295 (658)
T ss_pred CEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCCCCCCCCCHHHHHHCC
T ss_conf 74313788377999999716765689999875530123324322336655788607-----8988788898827764127
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 57850899999999999999999999999985998999999999
Q gi|254780178|r 323 RVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQE 366 (378)
Q Consensus 323 ~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~~~ 366 (378)
.-...+|++.||||+.+++++.|||||++|.+||++++-..
T Consensus 296 ---k~ERerLiAEHNLyVsF~EI~~ikQAI~dgsL~ELVEeRvR 336 (658)
T TIGR00432 296 ---KEERERLIAEHNLYVSFEEIEKIKQAIKDGSLFELVEERVR 336 (658)
T ss_pred ---HHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHC
T ss_conf ---77788787674441017788777764304871423545616
No 10
>TIGR00449 tgt_general tRNA-guanine transglycosylases, various specificities; InterPro: IPR002616 queuosine at position 34 in bacterial tRNAs and This is a family of queuine, archaeosine and general tRNA-ribosyltransferases 2.4.2.29 from EC, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine at position 34 and with archaeosine at position 15 in archaeal tRNAs. In bacterial it catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position , . The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues .; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0006400 tRNA modification, 0008616 queuosine biosynthetic process.
Probab=100.00 E-value=0 Score=538.68 Aligned_cols=364 Identities=49% Similarity=0.847 Sum_probs=356.5
Q ss_pred EEEEEECCC--CEEEEEEECCEEEECCCEEECCCCCCCCCCCHHHHHHCCCCEEEEEHHHHHHCCCHHHHHHCCCCHHHC
Q ss_conf 999976499--327999878875405857410686856886889998609989993226657387689986527420110
Q gi|254780178|r 7 FNLKAVSGS--ARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNAYHLMLRPGAERIARLGGLHKFI 84 (378)
Q Consensus 7 F~i~~~~~~--aR~G~L~t~~g~i~TP~flpv~t~g~v~~lt~~~l~~~g~~~il~Ntyhl~~~pg~~~i~~~gGlh~fl 84 (378)
|++.++++. +|+|.+.++||.++||+|+|+++.|+++.+++.+++..+++++++|+||+|++||.+.++..+|+|+|+
T Consensus 1 ~~~~~~~~~~~~~~g~~~~~~g~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~~~g~~~~~ 80 (375)
T TIGR00449 1 FELLKTDGHFGARVGLLKTPHGSVETPVFLPVGTLGTVKGLDPEDLKDLGAELVLANTYHLYLRPGEKLVALLGGLHKFL 80 (375)
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCEEEECCCCHHHCCCCHHHHHHHCCCEEEECEEEEEECCCHHHHHHHCCHHHHH
T ss_conf 95311012222210134326665234200001220000135445664301101110001021044157888631034554
Q ss_pred CCCCCEEECCCCCCCCHHH-HCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHH
Q ss_conf 1577224114543210122-102233331021014454158712999999987328977996012133221158999999
Q gi|254780178|r 85 RWFKPILTDSGGFQVMSLS-KLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAM 163 (378)
Q Consensus 85 ~~~~~ilTDSGgfQv~sl~-~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv 163 (378)
.|+++++|||||||+++++ +..++.++|+.|+++.+|+.+.++|+..+++|..+|+|+++++|+|++++.+.++.++++
T Consensus 81 ~~~~~~~~d~gg~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~p~~~~~~~~~~g~d~~~~~d~~~~~~~~~~~~~~~~ 160 (375)
T TIGR00449 81 NWDGPILTDSGGFQVFSLGFDLRKIEEEGVHFKSPLDGSKLFLTPEKSLEIQYALGSDIILPLDECTPPPADYDYAEESL 160 (375)
T ss_pred HCCCCEEECCCCCEEEEECCHHHHHCCCCCEECCCCCCCEEEECHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHH
T ss_conf 20332011466513332110111100024111054576402205035567566505410110002567763067788888
Q ss_pred HHHHHHHHHHHHHHCCC-CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCH--HHHHHHHHHHHHCCC
Q ss_conf 98899999998851358-88605540234443668999988764222346766413-567516--789989998985077
Q gi|254780178|r 164 ELSLRWAERSLVAFGNQ-PGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGL-AVGEPQ--EVMLHILSNVLPILP 239 (378)
Q Consensus 164 ~rT~~w~~~~~~~~~~~-~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl-~~ge~~--~~~~~ii~~~~~~LP 239 (378)
++|.+|+++|++.++.. ..+.+|+++|||.++|+|..++..+.+.+++||++||+ +++++. +.+.+++.++.+.+|
T Consensus 161 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~gg~~~~g~~~~~~~~~~~~~~~~~~~p 240 (375)
T TIGR00449 161 ERTLRWAEESLEYHKRRGGENLLFGIVQGGTYPDLRKLSAKGLLELGFPGYAIGGLVSLGEPKRFEDLLRVLEHTAPLLP 240 (375)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 88888888888864135744213443236402567777665555337764222310001331468899999987754146
Q ss_pred HHHHEECCCCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCC-CCCHHHHHHHHCCCCCCCCCCCCCHHHCCCCHHHH
Q ss_conf 03310025410189999998538983662000002332002456-21002101232236885598669813368898999
Q gi|254780178|r 240 VERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTR-FGKINLRNARHIDDMRPLDAESHCSALRDYSRAYL 318 (378)
Q Consensus 240 ~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t~-~g~i~l~~~~~~~d~~pi~~~C~C~~C~~ytraYl 318 (378)
.++|||++|+|+|..++.++..|+|+|||+.|++.+++|.+++. .|.+++++..|+.|..|++..|.|++|++|+++|+
T Consensus 241 ~~~p~~~~g~g~p~~~~~~~~~g~d~~d~~~p~~~~~~~~~~~~p~g~~~~~~~~~~~d~~p~~~~c~c~~c~~~~~~~~ 320 (375)
T TIGR00449 241 KDKPRYLLGVGTPEDLLDAVSLGVDLFDCVAPTRYARNGTLLTTPEGRLKLKNAKYKDDTRPLDEPCDCYTCKNYSRAYL 320 (375)
T ss_pred CCCCCCEEECCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEECCCCCEEECCCCCCCCCCCCCCCCCCHHHCCCCHHHH
T ss_conf 42452012057488998888732204555555542147704544643112021100113555554432011113557888
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 8868578508999999999999999999999999859989999999998532
Q gi|254780178|r 319 HHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQENWKK 370 (378)
Q Consensus 319 ~HL~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~~~~~~~ 370 (378)
+||.+++|.++.+|.+.||++++.++++.+|++|.++.|.+|.+++.+.+..
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (375)
T TIGR00449 321 RHLDRANELLGARLASEHNLHFLLRLLEKIRQAILEGRLLSFVEEFLEKYGR 372 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
T ss_conf 7776533444445444445788999999998876314046789999974246
No 11
>KOG3909 consensus
Probab=100.00 E-value=0 Score=458.30 Aligned_cols=354 Identities=25% Similarity=0.376 Sum_probs=295.6
Q ss_pred CEEEEEEECCCCEEEEEEE--CCEEEECCCEEECCCCCCCCCCCHHHHHH-CCCCEEEEEHHHHHHCCCHHHHHH--CCC
Q ss_conf 0499997649932799987--88754058574106868568868899986-099899932266573876899865--274
Q gi|254780178|r 5 FHFNLKAVSGSARLGEIIT--PRGVIKTPAFMPVGTAGTVKAMYFDQVRD-LGADVILGNAYHLMLRPGAERIAR--LGG 79 (378)
Q Consensus 5 ~~F~i~~~~~~aR~G~L~t--~~g~i~TP~flpv~t~g~v~~lt~~~l~~-~g~~~il~Ntyhl~~~pg~~~i~~--~gG 79 (378)
|+|.|.++...||+|++.. ++.+.+||+|+.++++|++||||+|.+++ .+..+++.-|..-+.+- .+.+.+ .|+
T Consensus 1 mkfsies~~nggRLgki~~~sg~~~~ktP~fllytk~GsiPhLT~dv~en~~~~pa~~q~tlstL~~~-~e~lt~~neG~ 79 (414)
T KOG3909 1 MKFSIESSPNGGRLGKITVGSGNKVLKTPCFLLYTKRGSIPHLTPDVVENQFDIPALYQGTLSTLDRL-EESLTLTNEGT 79 (414)
T ss_pred CCEEEEECCCCCEEEEEEECCCCEEECCCCEEEECCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHH-HHHHHHHCCCC
T ss_conf 93036533677413334523688001575247652688777678778765317727875428789988-88788754775
Q ss_pred CHHHCCCCCCEEECCCCCCCCHHHHCCCCCCCCEEEECCC----CCCEEEECHHHHHHHHHHCCCCEEEEE-HHHCCCCC
Q ss_conf 2011015772241145432101221022333310210144----541587129999999873289779960-12133221
Q gi|254780178|r 80 LHKFIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHI----DGSLYRVSPEESVHIQNLLGSDIQMQL-DECLALPA 154 (378)
Q Consensus 80 lh~fl~~~~~ilTDSGgfQv~sl~~~~~~~~~Gv~f~s~~----dG~~~~ltpe~~i~~q~~lg~DI~~~L-D~~~~~~~ 154 (378)
.++|++.++...+ .++.++......|..=++++ -.++..||.+.||++|.+++||++.+| |.+|+.+.
T Consensus 80 g~kfigmP~~l~~-------lllpdp~splPsgynd~ksv~iwTa~GkvsLtv~~ymeiv~sl~pd~~e~L~D~dts~~~ 152 (414)
T KOG3909 80 GKKFIGMPSVLPT-------LLLPDPTSPLPSGYNDQKSVNIWTASGKVSLTVDLYMEIVLSLCPDLVEPLNDTDTSPPG 152 (414)
T ss_pred CCCCCCCCCCCCE-------EECCCCCCCCCCCCCCCCEEEEEEECCCEECCHHHHHHHHHHHCCCEEECCCCCCCCCHH
T ss_conf 3320057554301-------213798888998777875267784068243139999999996298826404678889556
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCC---CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCHHHHHHH
Q ss_conf 158999999988999999988513588---8605540234443668999988764222346766413567-516789989
Q gi|254780178|r 155 EDKELKRAMELSLRWAERSLVAFGNQP---GKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVG-EPQEVMLHI 230 (378)
Q Consensus 155 ~~k~~~~sv~rT~~w~~~~~~~~~~~~---~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~g-e~~~~~~~i 230 (378)
.+||..||||||..|.++|+...+... ...+||.+.++.-..++-+++.+-......||+..||+.+ ++.++|.++
T Consensus 153 akkRv~KsVDRs~~f~~~ll~~~ekvn~~~~~~i~gg~~~~dr~~~~~~~areq~~~~ygg~~f~gF~~n~~t~~~~l~l 232 (414)
T KOG3909 153 AKKRVPKSVDRSVNFTTELLLALEKVNAFNTTKIFGGVPDLDRQYLTPIFAREQENQLYGGIAFLGFSNNKETDKEMLNL 232 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCEEEEEHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHC
T ss_conf 54444456777889999999987530320345564155674312310356665003565646764204786327777411
Q ss_pred HHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCC-------------C-CHHHHHHHHCC
Q ss_conf 998985077033100254101899999985389836620000023320024562-------------1-00210123223
Q gi|254780178|r 231 LSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRF-------------G-KINLRNARHID 296 (378)
Q Consensus 231 i~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t~~-------------g-~i~l~~~~~~~ 296 (378)
++++...||++|||.+.|..+|.+|+++|..|||+||+.+|+..+.+|.|||.. . .+|+|+++|++
T Consensus 233 le~~~~~Lpedkpr~Isg~~~PleVLecIQrGIDlfdssfpyqate~g~AltfSfd~p~~~d~~skie~~ld~~dekfae 312 (414)
T KOG3909 233 LEADLVGLPEDKPRCISGFESPLEVLECIQRGIDLFDSSFPYQATEAGVALTFSFDPPSKDDLNSKIELGLDMWDEKFAE 312 (414)
T ss_pred CHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHCCEEEEECCCCCCHHHHHHCEEEEECCCHHHHHH
T ss_conf 27764369988741147889879999999826210246531334534637897268986343443123332142566553
Q ss_pred CCCCCCCCCCCHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 6885598669813368898999886857850899999999999999999999999985998999999999
Q gi|254780178|r 297 DMRPLDAESHCSALRDYSRAYLHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQE 366 (378)
Q Consensus 297 d~~pi~~~C~C~~C~~ytraYl~HL~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~~~ 366 (378)
||+|+..+|.||||++|||||||||++++|++||+||++||+++|..||+.||+|+++++..+..+....
T Consensus 313 Dftpl~sgC~CytC~kytRaYlhHLl~TrELLa~ILLm~HN~yhy~afF~~IReSl~~del~ql~Eli~~ 382 (414)
T KOG3909 313 DFTPLQSGCVCYTCRKYTRAYLHHLLQTRELLAWILLMLHNVYHYTAFFQGIRESLQEDELVQLFELIYM 382 (414)
T ss_pred HCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf 1541115851411435679999999988889999999997399999999999998740304789999986
No 12
>COG1549 Queuine tRNA-ribosyltransferases, contain PUA domain [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=6.1e-09 Score=80.16 Aligned_cols=89 Identities=26% Similarity=0.456 Sum_probs=74.9
Q ss_pred HHCCCHHHHEECCCCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHCCCC
Q ss_conf 85077033100254101899999985389836620000023320024562100210123223688559866981336889
Q gi|254780178|r 235 LPILPVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDAESHCSALRDYS 314 (378)
Q Consensus 235 ~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t~~g~i~l~~~~~~~d~~pi~~~C~C~~C~~yt 314 (378)
....| ++.++.|+..|..|+.+|++|||+||.+..-.+|-+|.+||.+| .++ +
T Consensus 91 r~~~p--~~~~~s~~~~P~~iplLvYlGvD~fD~~~~~i~~~~g~~ft~~~------------~~~-------------~ 143 (519)
T COG1549 91 RYRFP--KALYASGLADPENIPLLVYLGVDLFDDSLAKIYAYEGLYFTPFG------------ISF-------------D 143 (519)
T ss_pred HCCCC--CCEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCC------------CCH-------------H
T ss_conf 42488--74562487880133568862700440689998874473114565------------530-------------1
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 899988685785089999999999999999999999998599899999999
Q gi|254780178|r 315 RAYLHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQ 365 (378)
Q Consensus 315 raYl~HL~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~~ 365 (378)
+ ..+.-||..++...++.+|.+|++|++.++++++.
T Consensus 144 ~---------------ed~~~~n~~~l~~~l~~vr~aI~~G~LR~~VE~a~ 179 (519)
T COG1549 144 R---------------EDLPRDNVEFLREMLERVRRAIRNGTLRELVEKAL 179 (519)
T ss_pred H---------------HHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 3---------------33121319999999999999985571999999870
No 13
>PHA01745 hypothetical protein
Probab=98.24 E-value=4e-06 Score=61.23 Aligned_cols=167 Identities=16% Similarity=0.157 Sum_probs=106.6
Q ss_pred HCCCCCCEEECCCCCCCCHHHHCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHH
Q ss_conf 10157722411454321012210223333102101445415871299999998732897799601213322115899999
Q gi|254780178|r 83 FIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRA 162 (378)
Q Consensus 83 fl~~~~~ilTDSGgfQv~sl~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~s 162 (378)
=+.|..-.-.||||||+++.+ +.+++|.+.+--+.+.++.++.||.+.-.....
T Consensus 30 ~i~W~NeTwVDSGGyQI~~~~--------------------ikis~e~vl~KYK~~~a~a~~sLDiPs~~~~~~------ 83 (306)
T PHA01745 30 KITWKNETWVDSGGYQIMLYN--------------------LKISVDDVLDKYKTYNAYAFFSLDIPSIFEPLS------ 83 (306)
T ss_pred CCCCCCCEEECCCCEEEEECC--------------------CCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCC------
T ss_conf 554246534726873898567--------------------645599999997325810389704732348820------
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH----HHHHHHHHCC
Q ss_conf 998899999998851358886055402344436689999887642223467664135675167899----8999898507
Q gi|254780178|r 163 MELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVML----HILSNVLPIL 238 (378)
Q Consensus 163 v~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~----~ii~~~~~~L 238 (378)
++.-...+-.....+. ...+.++|++ ...+...++++.-++ =.+-.|.||+... ++-.+. .....+..
T Consensus 84 -~~Nf~~FEyLYt~~e~--~~~iiPViH~-Y~~~~vd~aiDFYsQ-Ytd~iAFGGivas-Sk~k~l~~a~~~y~yvRk-- 155 (306)
T PHA01745 84 -RKNFEYFEYLYTKLEY--IERIIPVIHL-YPVREVDEAIDFYSQ-YTDYIAFGGIVAS-SKLKILIYAFPWYYYIRK-- 155 (306)
T ss_pred -HHHHHHHHHHHHHHHH--HCCEEEEEEC-CCHHHHHHHHHHHHH-HHHHEEECCEECH-HHCCCEEEEEEHHHHHHH--
T ss_conf -1216899999988763--1215336740-538888888878987-6565024546035-550844677418999998--
Q ss_pred CHHHHEECCCCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCCCC
Q ss_conf 703310025410189999998538983662000002332002456210
Q gi|254780178|r 239 PVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGK 286 (378)
Q Consensus 239 P~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t~~g~ 286 (378)
.-+-.|++|+|.|--. .|-.-+|..|.+-++..|-+|..+-+.|.
T Consensus 156 -~vk~lHvlG~~aPy~r--~vF~~ads~DTsTy~~~~~~r~i~~pdg~ 200 (306)
T PHA01745 156 -YVKRLHVLGMSAPYFR--QVFYDADSMDTSTYTVKAIHREIFWFDGT 200 (306)
T ss_pred -HHHHEEEECCCCHHHH--HHHCCCCCCCCHHEEEECCCCEEEECCCC
T ss_conf -7554034136872588--77214221443101463145169950895
No 14
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=97.17 E-value=0.02 Score=36.35 Aligned_cols=220 Identities=16% Similarity=0.205 Sum_probs=120.8
Q ss_pred HHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-CCCEEE--EECCCCCCHHHHHHHHHHH
Q ss_conf 9999998732897799601213322115899999998899999998851358-886055--4023444366899998876
Q gi|254780178|r 129 EESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQ-PGKALF--GIVQGGDNINLRSFSAERL 205 (378)
Q Consensus 129 e~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~-~~~~lf--giVqGG~~~dLR~~Sa~~l 205 (378)
+..++.-..=|-||+-.||-.-.... ++.+.+.++++ ... .....+ .++ ...|-=..-|+++
T Consensus 100 ~~fv~~~~~~GidifRiFDaLNdv~N--------m~~ai~~vk~~----G~~~q~~i~yt~sPv---ht~~yy~~~ak~l 164 (499)
T PRK12330 100 DRFVEKSAENGMDVFRVFDALNDLRN--------LETSIKAVKKT----GKHAQGTICYTVSPI---HTTEGFVEQAKRL 164 (499)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCHHH--------HHHHHHHHHHC----CCEEEEEEEEECCCC---CCHHHHHHHHHHH
T ss_conf 99999999769988997244445777--------89999999971----885899999605887---7899999999999
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCC----HHHHHHHHHHHCCCCEEEECCEEECCCCCCC-
Q ss_conf 42223467664135675167899899989850770331002541----0189999998538983662000002332002-
Q gi|254780178|r 206 KELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGV----GTPDDILKSVSYGVDMFDCVMPTRAGRHGLA- 280 (378)
Q Consensus 206 ~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~----G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~- 280 (378)
.+++.+..+|--.+.-..-...+++|..++..++++.|.|++.- -.+...+.||+.|+|+.|++......--+.-
T Consensus 165 ~~~G~d~i~IKDmAGll~P~~a~~LV~~lk~~~g~d~pI~~HtH~T~G~~~~~~l~AieAGvDivD~A~~~~s~gtsqp~ 244 (499)
T PRK12330 165 LDMGCDSICIKDMAALLKPQPAYDLVKGIKEACGPDTRVHVHAHATTGVTLVSLMKAIEAGVDVVDTAISSMSLGPGHNP 244 (499)
T ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCC
T ss_conf 97599989984753467889999999999986389983798517887469999999998499887244543237988997
Q ss_pred -------CC---CCCCHHHHH----HHHCCCCCCCCCCCCCHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf -------45---621002101----2322368855986698133688989998868578508999999999999999999
Q gi|254780178|r 281 -------FT---RFGKINLRN----ARHIDDMRPLDAESHCSALRDYSRAYLHHLLRVNESLAGMILSWANLAYYQDLMK 346 (378)
Q Consensus 281 -------~t---~~g~i~l~~----~~~~~d~~pi~~~C~C~~C~~ytraYl~HL~~~~E~l~~~Ll~iHNl~~~~~~~~ 346 (378)
+- .+--+|+.. +.|..+.++.-....+..+.--++-|. +++=|..+ -|| ..
T Consensus 245 ~~s~va~L~~t~~d~~ld~~~l~~i~~y~~~vr~~Y~~fe~~~~~~d~~v~~------~q~PGGm~---sNl------~~ 309 (499)
T PRK12330 245 TESLVEMLEGTGYTTKLDMDRLLKIKDHFAKVRPRYKEFLSKITGVETEIFK------SQIPGGML---SNM------ES 309 (499)
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHC------CCCCHHHH---HHH------HH
T ss_conf 9999999857898899799999999999999999997504667678863503------88956689---999------99
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99999985998999999999853279986659
Q gi|254780178|r 347 EIRSAIAEDCFVDFAMQTQENWKKGDIPPIFT 378 (378)
Q Consensus 347 ~iR~aI~~g~f~~~~~~~~~~~~~~~~~~~~~ 378 (378)
++|+.=..++|.+-.+++-+.++..-.||.-|
T Consensus 310 Ql~~~g~~dr~~eVl~e~~~Vr~~lG~p~lVT 341 (499)
T PRK12330 310 QLKQQGAGDRMKEVLEEVPRVRKDAGYPPLVT 341 (499)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEC
T ss_conf 99977847679999999999999669986468
No 15
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=96.49 E-value=0.085 Score=32.21 Aligned_cols=221 Identities=19% Similarity=0.186 Sum_probs=125.2
Q ss_pred EEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCE--EE--EE
Q ss_conf 021014454158712999999987328977996012133221158999999988999999988513588860--55--40
Q gi|254780178|r 113 VRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKA--LF--GI 188 (378)
Q Consensus 113 v~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~--lf--gi 188 (378)
|.++.+.|- -.+..++--..=|-|++=.||-.-+. |..+.+-+|.+.+... -|. .+ .|
T Consensus 90 vGYrhyaDD-----vVe~Fv~ka~~nGidvfRiFDAlND~------------RNl~~ai~a~kk~G~h-~q~~i~YT~sP 151 (472)
T COG5016 90 VGYRHYADD-----VVEKFVEKAAENGIDVFRIFDALNDV------------RNLKTAIKAAKKHGAH-VQGTISYTTSP 151 (472)
T ss_pred CCCCCCCHH-----HHHHHHHHHHHCCCCEEEECHHCCCH------------HHHHHHHHHHHHCCCE-EEEEEEECCCC
T ss_conf 365678458-----99999999986487579721110464------------6799999999961863-68998742688
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCC----CHHHHHHHHHHHCCCC
Q ss_conf 234443668999988764222346766413567516789989998985077033100254----1018999999853898
Q gi|254780178|r 189 VQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMG----VGTPDDILKSVSYGVD 264 (378)
Q Consensus 189 VqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G----~G~P~~i~~~v~~GvD 264 (378)
| ...+.-.+-++++.+++.|-.+|-..+.-.+-..-+++|..++..+| -|.+|+. .-.+...+.+|+.|+|
T Consensus 152 v---Ht~e~yv~~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~~~--~pv~lHtH~TsG~a~m~ylkAvEAGvD 226 (472)
T COG5016 152 V---HTLEYYVELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKELP--VPVELHTHATSGMAEMTYLKAVEAGVD 226 (472)
T ss_pred C---CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 6---52899999999999727987884000026986889999999997459--706985045556179999999981764
Q ss_pred EEEECCEEECCCCCC--------CCCCCC---CHHHH------------HHHHCCCCCCCCCCCCCHHHCCCCHHHHHHH
Q ss_conf 366200000233200--------245621---00210------------1232236885598669813368898999886
Q gi|254780178|r 265 MFDCVMPTRAGRHGL--------AFTRFG---KINLR------------NARHIDDMRPLDAESHCSALRDYSRAYLHHL 321 (378)
Q Consensus 265 lFD~~~ptr~Ar~G~--------~~t~~g---~i~l~------------~~~~~~d~~pi~~~C~C~~C~~ytraYl~HL 321 (378)
++|++......--+. +|...+ -+++. ..+|+.-+.|....-+--+ |
T Consensus 227 ~iDTAisp~S~gtsqP~tEtmv~aL~gt~yDtgld~~~l~~~~~yf~~vrkkY~~~~~~~~~~~d~~i-----------l 295 (472)
T COG5016 227 GIDTAISPLSGGTSQPATETMVAALRGTGYDTGLDLELLEEIAEYFREVRKKYKGLLEPQAKGVDPRI-----------L 295 (472)
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-----------E
T ss_conf 22210045557888995899999962799876536999999999999999987532684014788750-----------6
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 857850899999999999999999999999985998999999999853279986659
Q gi|254780178|r 322 LRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQENWKKGDIPPIFT 378 (378)
Q Consensus 322 ~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~~~~~~~~~~~~~~~ 378 (378)
..-+=|. .+..+.+++|+.=..++|++-.++.-+..++.-+||+-|
T Consensus 296 --i~qvPGG---------MlSNl~sQLkeqnaldK~~eVLeEvprVredlGypPLVT 341 (472)
T COG5016 296 --IYQVPGG---------MLSNLESQLKEQNALDKLEEVLEEVPRVREDLGYPPLVT 341 (472)
T ss_pred --EEECCHH---------HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf --7637717---------889999999873456679999998488886069998658
No 16
>pfam00682 HMGL-like HMGL-like. This family contains a diverse set of enzymes. These include various aldolases and a region of pyruvate carboxylase.
Probab=96.29 E-value=0.11 Score=31.44 Aligned_cols=153 Identities=16% Similarity=0.063 Sum_probs=89.7
Q ss_pred CHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE-ECCCCCCHHHHHHHHHHH
Q ss_conf 2999999987328977996012133221158999999988999999988513588860554-023444366899998876
Q gi|254780178|r 127 SPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFG-IVQGGDNINLRSFSAERL 205 (378)
Q Consensus 127 tpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfg-iVqGG~~~dLR~~Sa~~l 205 (378)
..+..++.....|.|.+..+.-..+... .+...++.+....-++++++.-++..-..-|+ +-.+-...+.-.+.++.+
T Consensus 68 ~~~~~~e~~~~~g~~~i~i~~~~se~~~-~~n~~~s~~~~l~~~~~~i~~a~~~g~~v~f~~~~~~~~~~~~~~~~~~~~ 146 (237)
T pfam00682 68 DIDAAVEAAKGAGADRVHVFIATSDLHR-KYKLNKDREEVADRAVAAVEAARSAGIDVELGCEDAGRTDLAFLIEVVEVA 146 (237)
T ss_pred HHHHHHHHHHHCCCCEEEEEEECCHHHH-HHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 4999999999679999999610578789-988578999999999999999998699058840512324788999999999
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECC-----CCHHHHHHHHHHHCCCCEEEECCEEECCCCCCC
Q ss_conf 422234676641356751678998999898507703310025-----410189999998538983662000002332002
Q gi|254780178|r 206 KELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLM-----GVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLA 280 (378)
Q Consensus 206 ~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~-----G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~ 280 (378)
.+.+++.+.|.--.-...-++..+++..+.+.+|. .|..++ |.+ ....+.|++.|+|.||++.-=.-.|.|.+
T Consensus 147 ~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~-~~i~~H~Hn~~Gla-~aN~l~A~~aG~~~id~si~GlG~~~Gn~ 224 (237)
T pfam00682 147 QEAGATRINIADTVGVLTPNEAADLISALKDRVPP-VIIEVHCHNDLGMA-VANSLAAVEAGADRVDGTVNGLGERAGNA 224 (237)
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCC-CCEEEEECCCCCHH-HHHHHHHHHHCCCEEEECCCCCCCCCCCH
T ss_conf 86198579736864557989999999999970898-71588744886729-99999999968999987750315542676
Q ss_pred CC
Q ss_conf 45
Q gi|254780178|r 281 FT 282 (378)
Q Consensus 281 ~t 282 (378)
=|
T Consensus 225 ~t 226 (237)
T pfam00682 225 AL 226 (237)
T ss_pred HH
T ss_conf 49
No 17
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit; InterPro: IPR005776 This family describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea . The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.; GO: 0008948 oxaloacetate decarboxylase activity, 0006814 sodium ion transport.
Probab=95.57 E-value=0.09 Score=32.02 Aligned_cols=218 Identities=18% Similarity=0.187 Sum_probs=121.5
Q ss_pred EEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE-ECCC
Q ss_conf 021014454158712999999987328977996012133221158999999988999999988513588860554-0234
Q gi|254780178|r 113 VRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFG-IVQG 191 (378)
Q Consensus 113 v~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfg-iVqG 191 (378)
|-||.|.|-- -|.+|+-.-.=|-||+=+||- .+++|+ +..++++-++.. + .|||
T Consensus 83 lGYRHYADDV-----Ve~FV~~a~~NG~DVFRiFDA---LND~RN------------l~~ai~a~Kk~g-----~dHvQg 137 (616)
T TIGR01108 83 LGYRHYADDV-----VEAFVKKAVENGLDVFRIFDA---LNDPRN------------LQKAIEAAKKHG-----ADHVQG 137 (616)
T ss_pred CCCCCCCHHH-----HHHHHHHHHHCCCEEEEEECC---CCCHHH------------HHHHHHHHHHHC-----CCEEEE
T ss_conf 3441584368-----999999999759808995124---588778------------999999999738-----978999
Q ss_pred CCC--------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCC----HHHHHHHHHH
Q ss_conf 443--------6689999887642223467664135675167899899989850770331002541----0189999998
Q gi|254780178|r 192 GDN--------INLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGV----GTPDDILKSV 259 (378)
Q Consensus 192 G~~--------~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~----G~P~~i~~~v 259 (378)
.+. .|-=-.=|++++++++|-.+|=-.+.-.+-..=++++++++...+ +-|.||+-- -.+.-.+.||
T Consensus 138 ~iSYTtSPvHTl~~yl~la~~L~~~G~DSI~IKDMaGlLTP~~AYELV~alK~~~~-n~pvhLH~H~TtGmA~~AllkA~ 216 (616)
T TIGR01108 138 AISYTTSPVHTLEKYLELAKELLEMGVDSICIKDMAGLLTPKVAYELVSALKKEFG-NLPVHLHSHATTGMAEMALLKAI 216 (616)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CEEEEEECCCCHHHHHHHHHHHH
T ss_conf 97124684367888999999999818860552020046441589999999974239-74688632472337999999888
Q ss_pred HCCCCEEEECCEEECCCCCCC--------CCCCCC---HHHH------------HHHHCCCCCCCCCCCCCHHHCCCCHH
Q ss_conf 538983662000002332002--------456210---0210------------12322368855986698133688989
Q gi|254780178|r 260 SYGVDMFDCVMPTRAGRHGLA--------FTRFGK---INLR------------NARHIDDMRPLDAESHCSALRDYSRA 316 (378)
Q Consensus 260 ~~GvDlFD~~~ptr~Ar~G~~--------~t~~g~---i~l~------------~~~~~~d~~pi~~~C~C~~C~~ytra 316 (378)
+.|+|++|.+.....+--+.- |...|+ +|+. ++||..=.++...+.+ ||
T Consensus 217 EAG~d~iDTAisS~S~gtSHPptE~lv~~L~~~gyD~gld~~~L~~i~~YFr~VRkKY~~fle~~~~~~D-------~R- 288 (616)
T TIGR01108 217 EAGADMIDTAISSMSGGTSHPPTETLVAALRGTGYDTGLDIELLLEIADYFRKVRKKYSQFLESQLKGPD-------SR- 288 (616)
T ss_pred HCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-------CE-
T ss_conf 7078800200552347888874799999970578743102799999999999999999886076777888-------44-
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99886857850899999999999999999999999985998999999999853279986659
Q gi|254780178|r 317 YLHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQENWKKGDIPPIFT 378 (378)
Q Consensus 317 Yl~HL~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~~~~~~~~~~~~~~~ 378 (378)
=|+..= =|+ .+.+|.+++|+-=..+++++=.+|.-+..+.-=+||+-|
T Consensus 289 ---iLv~Qv--PGG---------M~SNL~~QLkEQna~DkLd~VL~EiPrVreDLGYpPLVT 336 (616)
T TIGR01108 289 ---ILVSQV--PGG---------MLSNLESQLKEQNALDKLDEVLEEIPRVREDLGYPPLVT 336 (616)
T ss_pred ---EEEEEC--CCH---------HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCC
T ss_conf ---899736--880---------688999999862375578888741574123267656977
No 18
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=95.13 E-value=0.31 Score=28.45 Aligned_cols=145 Identities=18% Similarity=0.174 Sum_probs=85.0
Q ss_pred CCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-CCEEEEEC
Q ss_conf 31021014454158712999999987328977996012133221158999999988999999988513588-86055402
Q gi|254780178|r 111 QGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQP-GKALFGIV 189 (378)
Q Consensus 111 ~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~-~~~lfgiV 189 (378)
+.|.|+++.|-- -+..++.-..-|-||+-.||-.-.... ++.+.+-.++ ..... ....|- +
T Consensus 87 N~vGy~~ypd~v-----v~~fv~~~~~~GidifRiFD~LNdv~n--------m~~~~~~v~~----~G~~~e~~i~yt-~ 148 (580)
T PRK09282 87 NLLGYRHYADDV-----VEKFVEKAAENGIDVFRIFDALNDVRN--------METAIKAVKK----VGAHAQGTISYT-T 148 (580)
T ss_pred CCCCCCCCCHHH-----HHHHHHHHHHCCCCEEEEEECCCCHHH--------HHHHHHHHHH----CCCEEEEEEEEE-C
T ss_conf 325644588689-----999999999769978997401232577--------8999999984----598799999971-5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCC----HHHHHHHHHHHCCCCE
Q ss_conf 344436689999887642223467664135675167899899989850770331002541----0189999998538983
Q gi|254780178|r 190 QGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGV----GTPDDILKSVSYGVDM 265 (378)
Q Consensus 190 qGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~----G~P~~i~~~v~~GvDl 265 (378)
---...|.-..-|+++.+++.+..+|--.+....-+..+++|...++.+ +.|.|++.- -.+...+.|++.|+|+
T Consensus 149 sP~ht~~yy~~~a~~l~~~G~d~i~iKDmaGll~P~~a~~LV~alk~~~--~lpI~~HtH~t~G~~~a~~l~A~eAGvdi 226 (580)
T PRK09282 149 SPVHTLETWVDLAKQLEEMGCDSICIKDMAGLLTPYAAYELVSALKKEV--DLPVHLHCHATTGLATMTYLKAVEAGVDI 226 (580)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCCHHHHHHHHHHHHCCCE
T ss_conf 8876389999999999974998899726655789899999999999861--98169982477647999999999848886
Q ss_pred EEECCEEECC
Q ss_conf 6620000023
Q gi|254780178|r 266 FDCVMPTRAG 275 (378)
Q Consensus 266 FD~~~ptr~A 275 (378)
.|++......
T Consensus 227 vD~a~~~~s~ 236 (580)
T PRK09282 227 LDTAISSMSM 236 (580)
T ss_pred EEECCCCCCC
T ss_conf 7001355348
No 19
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=93.92 E-value=0.57 Score=26.62 Aligned_cols=133 Identities=14% Similarity=0.130 Sum_probs=76.2
Q ss_pred HHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999987328977996012133221158999999988999999988513588860554023444366899998876422
Q gi|254780178|r 129 EESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKEL 208 (378)
Q Consensus 129 e~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~ 208 (378)
+..++....-|-||+-.+|-.-.... ++...+.+++. .......+.--.---...|--..-++++.+.
T Consensus 108 ~~fv~~~~~~GidvfriFD~LNd~~n--------~~~ai~~vk~~----G~~~~~~i~yt~sp~ht~~yy~~~ak~l~~~ 175 (468)
T PRK12581 108 DKFISLSAQNGIDVFRIFDALNDPRN--------IQQALRAVKKT----GKEAQLCIAYTTSPVHTLNYYLSLVKELVEM 175 (468)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCHHH--------HHHHHHHHHHC----CCEEEEEEEECCCCCCCHHHHHHHHHHHHHC
T ss_conf 99999999759987997314676789--------99999999963----8748999996689755499999999999973
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCC----HHHHHHHHHHHCCCCEEEECCEEECC
Q ss_conf 23467664135675167899899989850770331002541----01899999985389836620000023
Q gi|254780178|r 209 DLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGV----GTPDDILKSVSYGVDMFDCVMPTRAG 275 (378)
Q Consensus 209 ~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~----G~P~~i~~~v~~GvDlFD~~~ptr~A 275 (378)
+.+.++|--.+.-.+-...+++|..+... .+.|.+++.- -.+...+.||+.|+|+.|++......
T Consensus 176 Gad~I~iKDmaGlL~P~~a~~LV~~lK~~--~~iPI~~HtH~t~Gla~a~~laAieAGaDiVD~Ai~~~s~ 244 (468)
T PRK12581 176 GADSICIKDMAGILTPKAAKELVSGIKAM--TNLPLIVHTHATSGISQMTYLAAVEAGADRIDTALSPFSE 244 (468)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHC--CCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 99989984787776889999999999836--7986599825887549999999998199999744645357
No 20
>KOG2368 consensus
Probab=93.31 E-value=0.48 Score=27.17 Aligned_cols=216 Identities=21% Similarity=0.292 Sum_probs=120.4
Q ss_pred EEEECCCEEECCCCCCCCCCCHHHHHHCCCCEEEEEHHH--HHHCCCHHHHHHCCCCHHHCCCCCCEEE-CCCCCCCCHH
Q ss_conf 754058574106868568868899986099899932266--5738768998652742011015772241-1454321012
Q gi|254780178|r 26 GVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNAYH--LMLRPGAERIARLGGLHKFIRWFKPILT-DSGGFQVMSL 102 (378)
Q Consensus 26 g~i~TP~flpv~t~g~v~~lt~~~l~~~g~~~il~Ntyh--l~~~pg~~~i~~~gGlh~fl~~~~~ilT-DSGgfQv~sl 102 (378)
|--.-|.++|-. +|.--.|.|.+.|.+.+-+.+|. -|..--.+.-+-..|+|+|-+-.-|+|| ..-||+.---
T Consensus 29 GLQnEk~~vpt~----vKveLI~~Lse~Gl~~vEtTSFVSpKWVPQl~D~~ev~k~i~~~~Gv~yPVLtPNlkGf~~Ava 104 (316)
T KOG2368 29 GLQNEKNIVPTE----VKVELIDRLSECGLQVVETTSFVSPKWVPQLADHNEVMKGIRKFPGVSYPVLTPNLKGFEAAVA 104 (316)
T ss_pred CCCCCCCCCCCH----HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 000257657733----7799999998739724653034574324310446899976522888656411764465899986
Q ss_pred HHCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-
Q ss_conf 2102233331021014454158712999999987328977996012133221158999999988999999988513588-
Q gi|254780178|r 103 SKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQP- 181 (378)
Q Consensus 103 ~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~- 181 (378)
. . .++-+.|-+- .+ .-+.|.+.-+++.+...+++.+++-.+..
T Consensus 105 a---G-a~EvavFgaA----------------------------Se----~FslkNiNctiees~~rf~~v~kaA~~~ni 148 (316)
T KOG2368 105 A---G-AEEVAVFGAA----------------------------SE----AFSLKNINCTIEESLKRFMEVLKAAQEHNI 148 (316)
T ss_pred C---C-CEEEEEEEHH----------------------------HH----HHHHCCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 5---8-6157742121----------------------------34----542214785489999999999999997497
Q ss_pred --C---C-EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHCCCHHHHE-ECCCC--HH
Q ss_conf --8---6-0554023444366899998876422234676641-356751678998999898507703310-02541--01
Q gi|254780178|r 182 --G---K-ALFGIVQGGDNINLRSFSAERLKELDLKGYAIGG-LAVGEPQEVMLHILSNVLPILPVERPH-YLMGV--GT 251 (378)
Q Consensus 182 --~---~-~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgG-l~~ge~~~~~~~ii~~~~~~LP~~kPr-~l~G~--G~ 251 (378)
+ + .+-.+.||...+.-..+-++.+-+++..-..+|. +.+|-+ -.|.++++.++...|.++.- |-+.. -.
T Consensus 149 ~vRGYVScvvGCPyeG~v~P~kVa~V~k~ly~mGCyEiSLGDTIGvGTp-gtm~~ML~~Vmk~vPa~~LAVH~HDTYGQA 227 (316)
T KOG2368 149 RVRGYVSCVVGCPYEGAVQPSKVAEVVKKLYEMGCYEISLGDTIGVGTP-GTMKRMLDAVMKVVPAEKLAVHCHDTYGQA 227 (316)
T ss_pred CCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCC-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 5003788886587668748899999999998478679732661046895-058999999987478788410422017889
Q ss_pred HHHHHHHHHCCCCEEEECC------EEECCCCCCCCC
Q ss_conf 8999999853898366200------000233200245
Q gi|254780178|r 252 PDDILKSVSYGVDMFDCVM------PTRAGRHGLAFT 282 (378)
Q Consensus 252 P~~i~~~v~~GvDlFD~~~------ptr~Ar~G~~~t 282 (378)
...|+.++.+||...||+. |+-....|.+-|
T Consensus 228 LaNiL~slqmGi~vvDSsvaGLGGCPYAkGAsGN~AT 264 (316)
T KOG2368 228 LANILVSLQMGIRVVDSSVAGLGGCPYAKGASGNLAT 264 (316)
T ss_pred HHHHHHHHHHCCEEHHHHCCCCCCCCCCCCCCCCCHH
T ss_conf 9999999981611131111356799755567877317
No 21
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=93.17 E-value=0.76 Score=25.82 Aligned_cols=133 Identities=17% Similarity=0.109 Sum_probs=76.3
Q ss_pred HHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999987328977996012133221158999999988999999988513588860554023444366899998876422
Q gi|254780178|r 129 EESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKEL 208 (378)
Q Consensus 129 e~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~ 208 (378)
+..++.-..-|-|++-.+|-..... .. +...+++++.-. ...-.+.--.---...|--.+-++++.+.
T Consensus 99 ~~~v~~a~~~Gidv~rifd~lndi~----nl----~~ai~~~k~~G~----~~~~~i~yt~sp~~t~~yyv~~a~~l~~~ 166 (463)
T PRK12331 99 ESFVQKSIENGIDIIRIFDALNDVR----NL----QTAVKATKKAGG----HAQVAISYTTSPVHTIDYFVKLAKEMQEI 166 (463)
T ss_pred HHHHHHHHHCCCCEEEEEECCCHHH----HH----HHHHHHHHHCCC----EEEEEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 9999999985999788740566467----78----999999997078----69999997258867699999999999964
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCC----HHHHHHHHHHHCCCCEEEECCEEECC
Q ss_conf 23467664135675167899899989850770331002541----01899999985389836620000023
Q gi|254780178|r 209 DLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGV----GTPDDILKSVSYGVDMFDCVMPTRAG 275 (378)
Q Consensus 209 ~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~----G~P~~i~~~v~~GvDlFD~~~ptr~A 275 (378)
+.+.+.|--.+....-...+++|...+..+ +.|.+++.- -.+...+.||+.|+|+.|++......
T Consensus 167 Gad~I~ikD~aGll~P~~~~eLV~aLk~~~--~lpI~~HtH~t~Gla~an~laAieAGaDivD~a~~~~s~ 235 (463)
T PRK12331 167 GADSICIKDMAGILTPYVAYELVKCIKENV--TVPLEVHTHATSGIAEMTYLKAIEAGADIIDTAISPFAG 235 (463)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 998899867867768899999999999744--985699836887579999999998499999623535467
No 22
>PRK12999 pyruvate carboxylase; Reviewed
Probab=91.63 E-value=0.56 Score=26.72 Aligned_cols=149 Identities=17% Similarity=0.153 Sum_probs=81.8
Q ss_pred CCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHH---HHHHHHHHHHCCCCCCEEE
Q ss_conf 3310210144541587129999999873289779960121332211589999999889---9999998851358886055
Q gi|254780178|r 110 EQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSL---RWAERSLVAFGNQPGKALF 186 (378)
Q Consensus 110 ~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~---~w~~~~~~~~~~~~~~~lf 186 (378)
.+.|-|+++.|-- -+.+++--..-|-||+=+||-.-... -.+.+++-.. +.++-++.+-.+ +.
T Consensus 617 ~N~vGY~~Ypdnv-----v~~fv~~a~~~GiDvfRiFD~LN~~~----nm~~~i~~v~~~g~~~e~aicyTGd-----i~ 682 (1147)
T PRK12999 617 SNAVGYTNYPDNV-----VRAFVREAAAAGIDVFRIFDSLNWVE----NMRVAIDAVRETGKVAEAAICYTGD-----IL 682 (1147)
T ss_pred CCCCCCCCCCHHH-----HHHHHHHHHHHCCCEEEEECCCCCHH----HHHHHHHHHHHCCCEEEEEEEECCC-----CC
T ss_conf 4445766797379-----99999999983989116731344667----7899999999709889999874257-----77
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCC----HHHHHHHHHHHCC
Q ss_conf 402344436689999887642223467664135675167899899989850770331002541----0189999998538
Q gi|254780178|r 187 GIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGV----GTPDDILKSVSYG 262 (378)
Q Consensus 187 giVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~----G~P~~i~~~v~~G 262 (378)
-+..--...|--..-|++|.+++.+-.+|--.+..-.-....++|...+.. .+-|.|++.- .....++.|++.|
T Consensus 683 dp~~~~~~l~yy~~~a~~l~~~G~~~l~IKDMAGLl~P~aa~~LV~aLk~~--~~lPIhlHtHdTsG~~~at~laA~eAG 760 (1147)
T PRK12999 683 DPARAKYDLDYYVDLAKELEAAGAHILAIKDMAGLLKPAAAYKLVSALKEE--VDLPIHLHTHDTSGNGLATYLAAAEAG 760 (1147)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHH--CCCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 878887669999999999997689889971445468879999999999861--698459843678855899999999859
Q ss_pred CCEEEECCEEEC
Q ss_conf 983662000002
Q gi|254780178|r 263 VDMFDCVMPTRA 274 (378)
Q Consensus 263 vDlFD~~~ptr~ 274 (378)
+|+.|++.-...
T Consensus 761 vDiVD~A~ssmS 772 (1147)
T PRK12999 761 VDIVDVAMASMS 772 (1147)
T ss_pred CCEEECCCHHHC
T ss_conf 998963541102
No 23
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=90.17 E-value=1 Score=25.02 Aligned_cols=21 Identities=19% Similarity=0.003 Sum_probs=13.3
Q ss_pred CHHHHHHHHHHHCCCCEEEEC
Q ss_conf 101899999985389836620
Q gi|254780178|r 249 VGTPDDILKSVSYGVDMFDCV 269 (378)
Q Consensus 249 ~G~P~~i~~~v~~GvDlFD~~ 269 (378)
.|.-..++....+|.|-+-|.
T Consensus 185 ~G~d~~~~~~l~~Ga~G~is~ 205 (292)
T PRK03170 185 SGDDALALPFLALGGVGVISV 205 (292)
T ss_pred CCCHHHHHHHHHHCCCEEEEE
T ss_conf 584899999999439869984
No 24
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=89.90 E-value=1.1 Score=24.78 Aligned_cols=119 Identities=17% Similarity=0.126 Sum_probs=48.6
Q ss_pred HHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC-CCCCHHHHHHHHHHHHH
Q ss_conf 99999987328977996012133221158999999988999999988513588860554023-44436689999887642
Q gi|254780178|r 129 EESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQ-GGDNINLRSFSAERLKE 207 (378)
Q Consensus 129 e~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVq-GG~~~dLR~~Sa~~l~~ 207 (378)
.+..+.-+.+|.|.++.+- |+.... +-+.-.+|.++..++ ...+ -.++-+-+ -|.. +--.-..++++
T Consensus 85 i~~a~~A~~~Gadai~v~p---P~y~~~-----s~~~l~~~~~~ia~a-~~lP-i~lYn~P~~tg~~--l~~~~l~~L~~ 152 (284)
T cd00950 85 IELTKRAEKAGADAALVVT---PYYNKP-----SQEGLYAHFKAIAEA-TDLP-VILYNVPGRTGVN--IEPETVLRLAE 152 (284)
T ss_pred HHHHHHHHHCCCCEEEECC---CCCCCC-----CHHHHHHHHHHHHHC-CCCC-EEEEECCCCCCCC--CCHHHHHHHHC
T ss_conf 9999999983999899626---657897-----999999999999755-5997-7987376411678--88899999847
Q ss_pred HHHHHHHHHCCCCC-CCHHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCEEEECC
Q ss_conf 22346766413567-5167899899989850770331002541018999999853898366200
Q gi|254780178|r 208 LDLKGYAIGGLAVG-EPQEVMLHILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDMFDCVM 270 (378)
Q Consensus 208 ~~~~G~aIgGl~~g-e~~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ 270 (378)
.+ .|-|+--. .+-..+.++ ....+.+ -+.+ .|+-..++.+..+|.|-+-|..
T Consensus 153 ~p----nv~giK~ss~d~~~~~~~----~~~~~~~-~~v~--~G~d~~~~~~l~~Ga~G~i~~~ 205 (284)
T cd00950 153 HP----NIVGIKEATGDLDRVSEL----IALCPDD-FAVL--SGDDALTLPFLALGGVGVISVA 205 (284)
T ss_pred CC----CEEEEECCCCCHHHHHHH----HHHCCCC-CEEE--CCCHHHHHHHHHHCCCEEEEEE
T ss_conf 99----989998588989999999----9866987-5464--4868999999995499699853
No 25
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=89.28 E-value=1.1 Score=24.66 Aligned_cols=156 Identities=20% Similarity=0.249 Sum_probs=81.0
Q ss_pred CCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEE-EH---HHCCCCCCHHHHHHHHHHHH-HHHHHHHHHHCC
Q ss_conf 02233331021014454158712999999987328977996-01---21332211589999999889-999999885135
Q gi|254780178|r 105 LCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQ-LD---ECLALPAEDKELKRAMELSL-RWAERSLVAFGN 179 (378)
Q Consensus 105 ~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~-LD---~~~~~~~~~k~~~~sv~rT~-~w~~~~~~~~~~ 179 (378)
+++...+|..|-+-.-.....++++..-+..+.+++|-... |+ +..-+.- +|.- -|++......+.
T Consensus 114 vR~~~p~~~l~aNiGa~~~~~~~~~~~~~av~~i~AdAl~iHlN~~QEl~qpEG---------Dr~f~~~l~~I~~i~~~ 184 (351)
T PRK05437 114 VRKVAPDGLLFANIGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEG---------DRDFRGWLDRIAEIVSA 184 (351)
T ss_pred HHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCHHHHCCCCC---------CCCHHHHHHHHHHHHHH
T ss_conf 998688873886127210143589999999997167815752462454028888---------97788999999999986
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC------C-----CH---HHH-------HHHHHHHHHCC
Q ss_conf 888605540234443668999988764222346766413567------5-----16---789-------98999898507
Q gi|254780178|r 180 QPGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVG------E-----PQ---EVM-------LHILSNVLPIL 238 (378)
Q Consensus 180 ~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~g------e-----~~---~~~-------~~ii~~~~~~L 238 (378)
.+-..+.==|+=|. ..+.++.+.+.+++++-++|-. | | .. +.+ .+.+..+...
T Consensus 185 ~~vPVIvKeVG~Gi----s~e~a~~l~~~Gv~~IdVsg~G-GTnf~~IE~~R~~~~~~~~~~~~wGipT~~sL~e~~~~- 258 (351)
T PRK05437 185 LPVPVIVKEVGFGI----SKETAKRLADAGVKAIDVAGAG-GTSWAAVENYRAKQRRLASYFADWGIPTAQSLLEARSA- 258 (351)
T ss_pred CCCCEEEEECCCCC----CHHHHHHHHHCCCCEEEECCCC-CCCHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHH-
T ss_conf 79988985215788----9999999996799999957998-85579999887102124577773486689999999974-
Q ss_pred CHHHHEECC-CCHHHHHHHHHHHCCCCEEEECCEEECC
Q ss_conf 703310025-4101899999985389836620000023
Q gi|254780178|r 239 PVERPHYLM-GVGTPDDILKSVSYGVDMFDCVMPTRAG 275 (378)
Q Consensus 239 P~~kPr~l~-G~G~P~~i~~~v~~GvDlFD~~~ptr~A 275 (378)
..+.|.+.. |+-++.|++.++++|.|+.=.+-|...+
T Consensus 259 ~~~~~iiasGGIR~glDi~KaLaLGA~~vgia~p~L~~ 296 (351)
T PRK05437 259 LPDLPIIASGGIRTGLDIAKALALGADAVGLAGPFLKA 296 (351)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 79982996278787899999999551077758999999
No 26
>pfam00701 DHDPS Dihydrodipicolinate synthetase family. This family has a TIM barrel structure.
Probab=87.98 E-value=1.7 Score=23.44 Aligned_cols=119 Identities=20% Similarity=0.211 Sum_probs=47.7
Q ss_pred HHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE-CCCCCCHHHHHHHHHHHHH
Q ss_conf 999999873289779960121332211589999999889999999885135888605540-2344436689999887642
Q gi|254780178|r 129 EESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGI-VQGGDNINLRSFSAERLKE 207 (378)
Q Consensus 129 e~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgi-VqGG~~~dLR~~Sa~~l~~ 207 (378)
.+..+.-+.+|.|-++..- +.+.... -+.-.++.++..++ ...+ -.++-. -.-|.. +--...+.+++
T Consensus 86 i~~a~~A~~~Gad~i~v~p--P~y~~~~------~~~i~~~~~~va~a-~~lP-i~iYn~P~~tg~~--l~~~~l~~L~~ 153 (289)
T pfam00701 86 IHLAQLAEAAGADGVLAVT--PYYNKPS------QEGLYQHFKAIAAA-TDLP-VILYNVPSRTGQD--LTPETIERLAE 153 (289)
T ss_pred HHHHHHHHHCCCCEEEECC--CCCCCCC------HHHHHHHHHHHHHC-CCCC-EEEEECCCCCCCC--CCHHHHHHHHC
T ss_conf 9999999974999788779--9888999------99999999999831-5997-7997156540336--79999999826
Q ss_pred HHHHHHHHHCCC--CCCCHHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCEEEECCE
Q ss_conf 223467664135--6751678998999898507703310025410189999998538983662000
Q gi|254780178|r 208 LDLKGYAIGGLA--VGEPQEVMLHILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDMFDCVMP 271 (378)
Q Consensus 208 ~~~~G~aIgGl~--~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~p 271 (378)
.+ .|-|+- .+ +-..+.+++ ...+. ++..-.|.-..++....+|.|-+-+..+
T Consensus 154 ~~----~i~giK~ss~-~~~~~~~~~----~~~~~---~~~v~~G~d~~~~~~l~~Ga~G~i~~~~ 207 (289)
T pfam00701 154 CP----NVVGVKDAVG-DLERMENIR----KRAGP---DFTILSGDDETALSYLSLGADGVISVTS 207 (289)
T ss_pred CC----CEEEEEECCC-CHHHHHHHH----HHCCC---CCEEECCCHHHHHHHHHCCCCEEEEEHH
T ss_conf 89----9899996998-999999999----96699---8245069489999998668987998415
No 27
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=87.83 E-value=2.2 Score=22.74 Aligned_cols=46 Identities=28% Similarity=0.471 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHCCCHHHHEEC--------CCCHHHHHHHHH----HHCCCCEEEECCE
Q ss_conf 899899989850770331002--------541018999999----8538983662000
Q gi|254780178|r 226 VMLHILSNVLPILPVERPHYL--------MGVGTPDDILKS----VSYGVDMFDCVMP 271 (378)
Q Consensus 226 ~~~~ii~~~~~~LP~~kPr~l--------~G~G~P~~i~~~----v~~GvDlFD~~~p 271 (378)
-..+++..+....|+++|..+ -|..++++-+.. -+.|+|++||+.-
T Consensus 608 f~lEV~~aVR~~~p~~~Pl~vRiSatDw~~gG~t~edsv~la~~l~~~GvD~IdvSsG 665 (770)
T PRK08255 608 YPLEVFRAVRAVWPADKPMSVRISAHDWVEGGNTPDDAVEIARAFKAAGADMIDVSSG 665 (770)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 8999999999867898866999851025689999999999999999749989995788
No 28
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=87.75 E-value=1.7 Score=23.43 Aligned_cols=18 Identities=22% Similarity=0.150 Sum_probs=10.7
Q ss_pred HHHHHHHHHCCCCEEEEE
Q ss_conf 999999873289779960
Q gi|254780178|r 129 EESVHIQNLLGSDIQMQL 146 (378)
Q Consensus 129 e~~i~~q~~lg~DI~~~L 146 (378)
.+..+.-+.+|.|-++.+
T Consensus 85 i~la~~A~~~Gadai~v~ 102 (296)
T PRK03620 85 IEYAQAAERAGADGILLL 102 (296)
T ss_pred HHHHHHHHHCCCCEEEEC
T ss_conf 999999998299989966
No 29
>pfam01070 FMN_dh FMN-dependent dehydrogenase.
Probab=87.58 E-value=1.4 Score=23.94 Aligned_cols=130 Identities=19% Similarity=0.234 Sum_probs=72.4
Q ss_pred HHHHHHHHHCCCCEEEE-EHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 99999987328977996-01213322115899999998899999998851358886055402344436689999887642
Q gi|254780178|r 129 EESVHIQNLLGSDIQMQ-LDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKE 207 (378)
Q Consensus 129 e~~i~~q~~lg~DI~~~-LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~ 207 (378)
++.++-.+..|.+..+. +|-..... +++-.+. ...++|+.+. .+.. +|-=|. +..+.|+...+
T Consensus 125 ~~~i~ra~~ag~~al~ltvD~~~~g~--r~~d~r~-~~~i~~l~~~------~~~P----vivKGI---~s~eDA~~a~~ 188 (301)
T pfam01070 125 EDLLERAEAAGYKALVLTVDTPVLGN--RERDLRN-GDDLAWLRDQ------WKGP----LVLKGI---LSPEDAKRAVE 188 (301)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCC--CCCCCCC-HHHHHHHHHH------CCCC----EEEECC---CCHHHHHHHHH
T ss_conf 99999999749997999726876577--8532043-9999999986------6998----899828---99999999998
Q ss_pred HHHHHHHHHCCCCCCC---HHHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEEEECCEEECC
Q ss_conf 2234676641356751---67899899989850770331002-54101899999985389836620000023
Q gi|254780178|r 208 LDLKGYAIGGLAVGEP---QEVMLHILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMFDCVMPTRAG 275 (378)
Q Consensus 208 ~~~~G~aIgGl~~ge~---~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlFD~~~ptr~A 275 (378)
.+++|..+++- -|-. .---.+++..+.+.+..+-|.++ -|+-+..||+.++++|.|..=..-|..+|
T Consensus 189 ~Gv~~I~VSnH-GGRqlD~~~~t~~~L~eI~~~v~~~~~i~~DGGIR~G~DV~KAlALGA~~V~iGRp~l~a 259 (301)
T pfam01070 189 AGVDGIVVSNH-GGRQLDGAPATIDALPEIVAAVGGRIPVLVDGGIRRGTDVLKALALGADAVLLGRPFLYG 259 (301)
T ss_pred CCCCEEEECCC-CCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCEEEECHHHHHH
T ss_conf 59999996499-854468886799999999998567748996387476268999998089866556899999
No 30
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=87.35 E-value=2.4 Score=22.40 Aligned_cols=133 Identities=19% Similarity=0.157 Sum_probs=75.5
Q ss_pred HHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHH----HHHHHHHCCCCCC-------EEEEECCCCCCHHHHHH
Q ss_conf 999873289779960121332211589999999889999----9998851358886-------05540234443668999
Q gi|254780178|r 132 VHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWA----ERSLVAFGNQPGK-------ALFGIVQGGDNINLRSF 200 (378)
Q Consensus 132 i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~----~~~~~~~~~~~~~-------~lfgiVqGG~~~dLR~~ 200 (378)
++.-...|.|.+-.+- ..|..-.++.+.+|..+. ++..+.-++..-. +...+-.|-..++...+
T Consensus 85 ~~~A~~~g~~~i~i~~-----~~Sd~h~~~nl~~t~~e~l~~~~~~i~~a~~~g~~v~~~i~~afg~p~~~~~~~~~l~~ 159 (287)
T PRK05692 85 LEAALAAGADEVAVFA-----SASEAFSQKNINCSIAESLARFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVAD 159 (287)
T ss_pred HHHHHHCCCCEEEEEE-----ECCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCHHHHHH
T ss_conf 7999977989899997-----41799999874799999999999999999976987999874013676468648999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHH-HHEEC---CCCHHHHHHHHHHHCCCCEEEECC
Q ss_conf 98876422234676641356751678998999898507703-31002---541018999999853898366200
Q gi|254780178|r 201 SAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVE-RPHYL---MGVGTPDDILKSVSYGVDMFDCVM 270 (378)
Q Consensus 201 Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~-kPr~l---~G~G~P~~i~~~v~~GvDlFD~~~ 270 (378)
.++.+.+.+.+-+.|.--.-...-.++.+++..+.+..|.. --.|. +|.+. ...+.++..|++.|||+.
T Consensus 160 ~~~~~~~~Ga~~I~laDT~G~a~P~~v~~~i~~v~~~~~~~~i~~H~Hnd~Gma~-AN~laAv~aGa~~vd~tv 232 (287)
T PRK05692 160 VAERLFALGCDEISLGDTIGVGTPGQVRRVLEAVLAEFPAERLAGHFHDTYGQAL-ANIYASLEEGITVFDASV 232 (287)
T ss_pred HHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHH-HHHHHHHHHCCCEEEEEC
T ss_conf 9999985799785447655666999999999999986688723567448730699-999999980999898855
No 31
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=87.16 E-value=2.4 Score=22.51 Aligned_cols=30 Identities=20% Similarity=0.335 Sum_probs=15.7
Q ss_pred HHHEECCCC-HHHHHHHHHHHCCCCEEEECC
Q ss_conf 331002541-018999999853898366200
Q gi|254780178|r 241 ERPHYLMGV-GTPDDILKSVSYGVDMFDCVM 270 (378)
Q Consensus 241 ~kPr~l~G~-G~P~~i~~~v~~GvDlFD~~~ 270 (378)
++..++-|. +.-..++...++|.|-+-+..
T Consensus 180 ~~~~~~~g~~~~d~~~~~~~~~G~~g~i~~~ 210 (296)
T TIGR03249 180 DRLGYLGGMPTAEVTAPAYLPLGVTSYSSAI 210 (296)
T ss_pred CCCEEEECCCCHHHHHHHHHHCCCCEEEEHH
T ss_conf 9727973897128999999938998996246
No 32
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=87.14 E-value=1.7 Score=23.40 Aligned_cols=17 Identities=24% Similarity=0.026 Sum_probs=8.1
Q ss_pred HHHHHHHHCCCCEEEEE
Q ss_conf 99999873289779960
Q gi|254780178|r 130 ESVHIQNLLGSDIQMQL 146 (378)
Q Consensus 130 ~~i~~q~~lg~DI~~~L 146 (378)
+..+.-+.+|.|-+|.+
T Consensus 94 ~~a~~a~~~Gad~~lv~ 110 (309)
T cd00952 94 ARTRALLDLGADGTMLG 110 (309)
T ss_pred HHHHHHHHCCCCEEEEC
T ss_conf 99999984698999988
No 33
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=86.50 E-value=2.6 Score=22.21 Aligned_cols=116 Identities=14% Similarity=0.078 Sum_probs=48.5
Q ss_pred HHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC-CCC--CCHHHHHHHHHHH
Q ss_conf 9999998732897799601213322115899999998899999998851358886055402-344--4366899998876
Q gi|254780178|r 129 EESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIV-QGG--DNINLRSFSAERL 205 (378)
Q Consensus 129 e~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiV-qGG--~~~dLR~~Sa~~l 205 (378)
.+..+.-+.+|.|.++.+ +|+..... -+.-.+|.++..++- .. .-.++=.- -.| ...|+- +++
T Consensus 89 i~~a~~a~~~Gad~v~~~---pP~y~~~~-----~~~i~~~f~~va~a~-~~-pi~iYn~P~~tg~~~~~~~l----~~L 154 (294)
T PRK04147 89 QELAKYATELGYDAISAV---TPFYYPFS-----FEEICDYYREIIDSA-DN-PMIVYNIPALTGVNLSLDQF----NEL 154 (294)
T ss_pred HHHHHHHHHCCCCEEEEC---CCCCCCCC-----HHHHHHHHHHHHHHC-CC-CEEEEECCCCCCCCCCHHHH----HHH
T ss_conf 999999997599889972---78677899-----899999999998504-99-77887567541678899999----999
Q ss_pred HHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCEEEECC
Q ss_conf 422234676641356-75167899899989850770331002541018999999853898366200
Q gi|254780178|r 206 KELDLKGYAIGGLAV-GEPQEVMLHILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDMFDCVM 270 (378)
Q Consensus 206 ~~~~~~G~aIgGl~~-ge~~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ 270 (378)
++.+ .|-|+-- ..+...+. .+....|. +- ++ .|.-..++.+..+|.|-+-|..
T Consensus 155 ~~~~----~i~giK~s~~d~~~~~----~i~~~~~~-~~--v~-~G~d~~~~~~~~~Ga~G~i~~~ 208 (294)
T PRK04147 155 FTLP----KIIGVKQTAGDLYQLE----RIRKAFPD-KL--IY-NGFDEMFLSGLLAGADGAIGST 208 (294)
T ss_pred HCCC----CEEEEEECCCCHHHHH----HHHHHCCC-EE--EE-ECCHHHHHHHHHCCCCEEEECH
T ss_conf 5689----9889992889999999----99974898-49--99-5865879999987996999447
No 34
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=85.08 E-value=2.8 Score=22.03 Aligned_cols=16 Identities=19% Similarity=0.152 Sum_probs=9.3
Q ss_pred HHHHHHHCCCCEEEEE
Q ss_conf 9999873289779960
Q gi|254780178|r 131 SVHIQNLLGSDIQMQL 146 (378)
Q Consensus 131 ~i~~q~~lg~DI~~~L 146 (378)
..+.-+.+|.|.+|.+
T Consensus 86 la~~a~~~Gadav~v~ 101 (289)
T cd00951 86 YAQAAEKAGADGILLL 101 (289)
T ss_pred HHHHHHHCCCCEEEEC
T ss_conf 9999997599999976
No 35
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=83.89 E-value=3.6 Score=21.31 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=13.8
Q ss_pred CHHHHHHHHHHHCCCCEEEECC
Q ss_conf 1018999999853898366200
Q gi|254780178|r 249 VGTPDDILKSVSYGVDMFDCVM 270 (378)
Q Consensus 249 ~G~P~~i~~~v~~GvDlFD~~~ 270 (378)
.|.-..++....+|.|-+-|..
T Consensus 181 ~G~d~~~~~~l~~G~~G~i~~~ 202 (281)
T cd00408 181 SGDDDLLLPALALGADGAISGA 202 (281)
T ss_pred CCCHHHHHHHHHCCCCCEEECH
T ss_conf 6966889999872898144024
No 36
>TIGR01418 PEP_synth phosphoenolpyruvate synthase; InterPro: IPR006319 This family represents phosphoenolpyruvate synthase; also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes. ; GO: 0008986 pyruvate water dikinase activity, 0006094 gluconeogenesis.
Probab=83.48 E-value=0.87 Score=25.42 Aligned_cols=73 Identities=23% Similarity=0.424 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHC-----CCCCCCH---------------HHHHHHHHHHHHCC-CHHHHEECCCC--H-HHHHHHH
Q ss_conf 8876422234676641-----3567516---------------78998999898507-70331002541--0-1899999
Q gi|254780178|r 202 AERLKELDLKGYAIGG-----LAVGEPQ---------------EVMLHILSNVLPIL-PVERPHYLMGV--G-TPDDILK 257 (378)
Q Consensus 202 a~~l~~~~~~G~aIgG-----l~~ge~~---------------~~~~~ii~~~~~~L-P~~kPr~l~G~--G-~P~~i~~ 257 (378)
|++.++.+||||.||+ |.+|-+. +-.+++|+-++..= -.+|=.=+.|= . +|+-.-+
T Consensus 770 Ad~f~~~GfDGFSiGSNDLTQLTLgvDRDSelVA~lGYFDErn~AVL~li~~~I~aAk~~G~~vgICGQAPSDyPe~vef 849 (877)
T TIGR01418 770 ADEFAKLGFDGFSIGSNDLTQLTLGVDRDSELVAHLGYFDERNPAVLRLIEMAIKAAKEHGKKVGICGQAPSDYPEVVEF 849 (877)
T ss_pred HHHHHHHCCCEEEECCCHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHH
T ss_conf 99898508771565751687766420104314330377757687999999999999987399698706888873899999
Q ss_pred HHHCCCCEE----EECCEEEC
Q ss_conf 985389836----62000002
Q gi|254780178|r 258 SVSYGVDMF----DCVMPTRA 274 (378)
Q Consensus 258 ~v~~GvDlF----D~~~ptr~ 274 (378)
+|+.|||-. |+|..|+.
T Consensus 850 LVe~GIDSiSlNPDaV~~t~~ 870 (877)
T TIGR01418 850 LVEEGIDSISLNPDAVLKTRL 870 (877)
T ss_pred HHHCCCCEEEECCCCCHHHHH
T ss_conf 985498769855401088999
No 37
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=82.98 E-value=3.9 Score=21.07 Aligned_cols=34 Identities=18% Similarity=0.203 Sum_probs=17.7
Q ss_pred HHHCCCHHHHEECCCCHHHHHHHHHHHCCCCEEEECC
Q ss_conf 9850770331002541018999999853898366200
Q gi|254780178|r 234 VLPILPVERPHYLMGVGTPDDILKSVSYGVDMFDCVM 270 (378)
Q Consensus 234 ~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ 270 (378)
+....|.+ .+.+.|.. ..++....+|.+-+-|..
T Consensus 174 ~~~~~~~~-~~v~~G~d--~~~~~~~~~Ga~G~i~~~ 207 (288)
T cd00954 174 IRAASPED-KLVLNGFD--EMLLSALALGADGAIGST 207 (288)
T ss_pred HHHHCCCC-CEEECCCH--HHHHHHHHCCCCEEEECH
T ss_conf 99976998-24616957--999999986998999576
No 38
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=81.68 E-value=4.3 Score=20.75 Aligned_cols=152 Identities=20% Similarity=0.198 Sum_probs=73.2
Q ss_pred CCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEE-EH---HHCCCCCCHHHHHHHHHHHH-HHHHHHHHHHCCC
Q ss_conf 2233331021014454158712999999987328977996-01---21332211589999999889-9999998851358
Q gi|254780178|r 106 CSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQ-LD---ECLALPAEDKELKRAMELSL-RWAERSLVAFGNQ 180 (378)
Q Consensus 106 ~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~-LD---~~~~~~~~~k~~~~sv~rT~-~w~~~~~~~~~~~ 180 (378)
+....+|..|.+-.-......+++..-+..+.+++|-... |+ +..-+.-+ |.- .|++......+..
T Consensus 107 R~~~p~~~l~aNiga~~l~~~~~~~~~~ai~~l~AdaL~iHlN~~QE~~~peGD---------r~f~~~~~~I~~l~~~~ 177 (326)
T cd02811 107 REAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGD---------RDFRGWLERIEELVKAL 177 (326)
T ss_pred HHHCCCCEEEEECCCHHHCCCCHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCC---------CCHHHHHHHHHHHHHHC
T ss_conf 875887627863580330456899999999855788578644606540078989---------87778999999999847
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC------C-----C-----HHHHH-------HHHHHHHHC
Q ss_conf 88605540234443668999988764222346766413567------5-----1-----67899-------899989850
Q gi|254780178|r 181 PGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVG------E-----P-----QEVML-------HILSNVLPI 237 (378)
Q Consensus 181 ~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~g------e-----~-----~~~~~-------~ii~~~~~~ 237 (378)
+-..+.==|+=|. -.+.++.+.+.+++++-++|-. | | + .+.+. +.+..+...
T Consensus 178 ~vPVIvKeVG~Gi----s~eda~~l~~~Gv~~IdVSghG-GTnf~~IE~~R~~d~~~~~~~~l~dwGi~T~~sL~e~~~~ 252 (326)
T cd02811 178 SVPVIVKEVGFGI----SRETAKRLADAGVKAIDVAGAG-GTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSA 252 (326)
T ss_pred CCCEEEEECCCCC----CHHHHHHHHHCCCCEEEECCCC-CCCHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 9985885247899----9999999996799999978999-9753665310156731337889886285569999999973
Q ss_pred CCHHHHEECC-CCHHHHHHHHHHHCCCCEEEECCEE
Q ss_conf 7703310025-4101899999985389836620000
Q gi|254780178|r 238 LPVERPHYLM-GVGTPDDILKSVSYGVDMFDCVMPT 272 (378)
Q Consensus 238 LP~~kPr~l~-G~G~P~~i~~~v~~GvDlFD~~~pt 272 (378)
..+-|...- |+-++.|++.++++|.|..=-+-|.
T Consensus 253 -~~~~~iiasGGir~g~Dv~KalaLGA~~vgiar~~ 287 (326)
T cd02811 253 -LPDLPLIASGGIRNGLDIAKALALGADLVGMAGPF 287 (326)
T ss_pred -CCCCEEEEECCCCCHHHHHHHHHHCCCHHHHHHHH
T ss_conf -89981998688787799999999555336527999
No 39
>PRK13129 consensus
Probab=78.74 E-value=5.3 Score=20.13 Aligned_cols=203 Identities=18% Similarity=0.151 Sum_probs=96.7
Q ss_pred CCCEEECCCCCCCCC-CCHHHH---HHCCCCEE-EEEHHHHHHCCCHHHHHHCC--CCHHHCCCCCCEEECCCCCCCCHH
Q ss_conf 585741068685688-688999---86099899-93226657387689986527--420110157722411454321012
Q gi|254780178|r 30 TPAFMPVGTAGTVKA-MYFDQV---RDLGADVI-LGNAYHLMLRPGAERIARLG--GLHKFIRWFKPILTDSGGFQVMSL 102 (378)
Q Consensus 30 TP~flpv~t~g~v~~-lt~~~l---~~~g~~~i-l~Ntyhl~~~pg~~~i~~~g--Glh~fl~~~~~ilTDSGgfQv~sl 102 (378)
-++|+|+.+.|-..- .+.+.+ .+.|++++ +.=.|--=.-.|+ +|+++. .|.+=++.+ +++.+
T Consensus 18 ~~ali~yitaG~P~~e~s~~~~~~l~~~GaDiiEiGiPfSDP~ADGp-vIq~A~~~AL~~G~~~~----------~~~~~ 86 (267)
T PRK13129 18 RCALMPFLMAGDPDLETTAEALLILQENGADLIELGIPYSDPLADGP-VIQAAATRALQSGTTLE----------KVLEM 86 (267)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHHCCCCHH----------HHHHH
T ss_conf 95589887071899899999999999779999997998888776589-99999999997698789----------99999
Q ss_pred -HHCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf -2102233331021014454158712999999987328977996012133221158999999988999999988513588
Q gi|254780178|r 103 -SKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQP 181 (378)
Q Consensus 103 -~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~ 181 (378)
...++..+..+-+-.+++ .......|..++--...|.|=++.-|-+. |....|...|.+. .- .
T Consensus 87 ~~~~r~~~~~PivlM~Y~N-~i~~~G~e~F~~~~~~~GvdGvIipDLP~-------------eE~~~~~~~~~~~-gl-~ 150 (267)
T PRK13129 87 LESLKGKLTIPIILFTYYN-PLLNRGMERFCEQAAAAGVAGLVVPDLPL-------------EEAEKLSPIAAER-GI-D 150 (267)
T ss_pred HHHHHCCCCCCEEEEEEHH-HHHHHHHHHHHHHHHHCCCCEEECCCCCH-------------HHHHHHHHHHHHC-CC-E
T ss_conf 9985434788889986107-89885599999999866987576789998-------------9999999999853-98-1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-CC---CHHHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHH
Q ss_conf 860554023444366899998876422234676641356-75---167899899989850770331002-5410189999
Q gi|254780178|r 182 GKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAV-GE---PQEVMLHILSNVLPILPVERPHYL-MGVGTPDDIL 256 (378)
Q Consensus 182 ~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~-ge---~~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~ 256 (378)
--.|.++ ...+.|.+.+...+. + +-|.++-.++ |. ..+...+.+..+.... ++|..+ ||+.+|+++-
T Consensus 151 ~I~lvaP----tt~~~Ri~~i~~~~~-g-FiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t--~~Pv~vGFGIs~~e~v~ 222 (267)
T PRK13129 151 LILLVAP----TTPAERMKRIAQQSR-G-FTYLVSVTGVTGERSQMENRVESLLQQLRQVT--SKPIAVGFGISGPEQAR 222 (267)
T ss_pred EEEEECC----CCCHHHHHHHHHCCC-C-EEEEEECCCCCCCCCCCCHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHH
T ss_conf 6899489----996899999981689-8-08987346656765445088999999999834--89817884479999999
Q ss_pred HHHHCCCCEEE
Q ss_conf 99853898366
Q gi|254780178|r 257 KSVSYGVDMFD 267 (378)
Q Consensus 257 ~~v~~GvDlFD 267 (378)
.....|.|-.-
T Consensus 223 ~~~~~~ADGvI 233 (267)
T PRK13129 223 QVREWGADGAI 233 (267)
T ss_pred HHHHCCCCEEE
T ss_conf 99854999999
No 40
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=77.20 E-value=4.3 Score=20.74 Aligned_cols=151 Identities=19% Similarity=0.199 Sum_probs=70.2
Q ss_pred CCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 33102101445415871299999998732897799601213322115899999998899999998851358886055402
Q gi|254780178|r 110 EQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIV 189 (378)
Q Consensus 110 ~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiV 189 (378)
.+||-|+++.|.-. ..+++--.+-|-||+-.||-.--. ..-+-.-.+|.++-+-++.++-+-.+ +.-+-
T Consensus 619 aN~VgY~nyPDnVi-----~~Fvkqaa~~GIDvFRiFDsLNwv-~~M~vaidAV~e~gkv~EatiCYTGD-----ildp~ 687 (1149)
T COG1038 619 ANGVGYKNYPDNVI-----REFVKQAAKSGIDVFRIFDSLNWV-EQMRVAIDAVREAGKVAEATICYTGD-----ILDPG 687 (1149)
T ss_pred CCCCCCCCCCHHHH-----HHHHHHHHHCCCCEEEEEHHHCCH-HHCHHHHHHHHHCCCEEEEEEEECCC-----CCCCC
T ss_conf 56567677966899-----999999876696489841001025-43445899998629847998873056-----67877
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHCCCHHHHEECCCC----HHHHHHHHHHHCCCC
Q ss_conf 344436689999887642223467664135-675167899899989850770331002541----018999999853898
Q gi|254780178|r 190 QGGDNINLRSFSAERLKELDLKGYAIGGLA-VGEPQEVMLHILSNVLPILPVERPHYLMGV----GTPDDILKSVSYGVD 264 (378)
Q Consensus 190 qGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~-~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~----G~P~~i~~~v~~GvD 264 (378)
.--+.+|--..-|+++.+.+....+|-..+ +..|. .-+.++.+..+.. +-|.|++.- +.-...+.|+..|+|
T Consensus 688 r~kY~L~YY~~lA~el~~~GaHIlaIKDMAGLLKP~-AA~~Li~aLr~~~--dlPIHlHTHDTsG~~~at~~aA~~AGvD 764 (1149)
T COG1038 688 RKKYTLDYYVKLAKELEKAGAHILAIKDMAGLLKPA-AAYRLISALRETV--DLPIHLHTHDTSGNGVATYLAAVEAGVD 764 (1149)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEHHHHHCCCHH-HHHHHHHHHHHHC--CCCEEEECCCCCCCHHHHHHHHHHCCCC
T ss_conf 644448999999999996677278763334214769-9999999998744--8844875167887189999999983863
Q ss_pred EEEECCEEEC
Q ss_conf 3662000002
Q gi|254780178|r 265 MFDCVMPTRA 274 (378)
Q Consensus 265 lFD~~~ptr~ 274 (378)
..|.++....
T Consensus 765 ivD~A~~sms 774 (1149)
T COG1038 765 IVDVAMASMS 774 (1149)
T ss_pred HHHHHHHHCC
T ss_conf 6666544214
No 41
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=74.69 E-value=6.8 Score=19.40 Aligned_cols=29 Identities=14% Similarity=0.164 Sum_probs=20.2
Q ss_pred EECCCCHHHHHHHHHHHCCCCEEEECCEE
Q ss_conf 00254101899999985389836620000
Q gi|254780178|r 244 HYLMGVGTPDDILKSVSYGVDMFDCVMPT 272 (378)
Q Consensus 244 r~l~G~G~P~~i~~~v~~GvDlFD~~~pt 272 (378)
+...-.|+-..++.+..+|.|-+-|+.+.
T Consensus 174 ~~~v~~G~d~~~~~~l~~Ga~G~i~~~~n 202 (279)
T cd00953 174 DFKVYSGPDSLIFSALRSGLDGSVAAASN 202 (279)
T ss_pred CCEEECCCHHHHHHHHHCCCEEEEEHHHH
T ss_conf 94785695799999998099799970898
No 42
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=73.44 E-value=7.3 Score=19.20 Aligned_cols=121 Identities=20% Similarity=0.202 Sum_probs=54.1
Q ss_pred HHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE-CCCCCCHHHHHHHHHHHHH
Q ss_conf 999999873289779960121332211589999999889999999885135888605540-2344436689999887642
Q gi|254780178|r 129 EESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGI-VQGGDNINLRSFSAERLKE 207 (378)
Q Consensus 129 e~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgi-VqGG~~~dLR~~Sa~~l~~ 207 (378)
-+..+.-+.+|.|-++..- +.|..+.. +-...|.+...++- +.+ ..|+-+ ---|.. +--+-...+++
T Consensus 89 i~lak~a~~~Gad~il~v~--PyY~k~~~------~gl~~hf~~ia~a~-~lP-vilYN~P~~tg~~--l~~e~i~~la~ 156 (299)
T COG0329 89 IELAKHAEKLGADGILVVP--PYYNKPSQ------EGLYAHFKAIAEAV-DLP-VILYNIPSRTGVD--LSPETIARLAE 156 (299)
T ss_pred HHHHHHHHHCCCCEEEEEC--CCCCCCCH------HHHHHHHHHHHHHC-CCC-EEEEECCCCCCCC--CCHHHHHHHHC
T ss_conf 9999999970999999848--97889897------99999999999851-899-8999787524899--99999999827
Q ss_pred HHHHHHHHHCC--CCCCCHHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCEEEECCEE
Q ss_conf 22346766413--567516789989998985077033100254101899999985389836620000
Q gi|254780178|r 208 LDLKGYAIGGL--AVGEPQEVMLHILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPT 272 (378)
Q Consensus 208 ~~~~G~aIgGl--~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~pt 272 (378)
.+ .|-|+ +.| +-+.+.+++.. .+.. .+....|.=...+.+..+|.|-+-|+...
T Consensus 157 ~~----nivgiKd~~g-d~~~~~~~~~~----~~~~--~f~v~~G~d~~~~~~~~~G~~G~is~~~N 212 (299)
T COG0329 157 HP----NIVGVKDSSG-DLDRLEEIIAA----LGDR--DFIVLSGDDELALPALLLGADGVISVTAN 212 (299)
T ss_pred CC----CEEEEEECCC-CHHHHHHHHHH----CCCC--CEEEEECCHHHHHHHHHCCCCEEEECCCH
T ss_conf 89----8899984788-99999999986----4876--62898266588889986779858841001
No 43
>PRK13127 consensus
Probab=72.07 E-value=7.9 Score=18.99 Aligned_cols=199 Identities=18% Similarity=0.171 Sum_probs=96.9
Q ss_pred CCCEEECCCCCCCCC-CCHHHH---HHCCCCEE-EEEHHHHHHCCCH-------HHHHHCCCCHHHCCCCCCEEECCCCC
Q ss_conf 585741068685688-688999---86099899-9322665738768-------99865274201101577224114543
Q gi|254780178|r 30 TPAFMPVGTAGTVKA-MYFDQV---RDLGADVI-LGNAYHLMLRPGA-------ERIARLGGLHKFIRWFKPILTDSGGF 97 (378)
Q Consensus 30 TP~flpv~t~g~v~~-lt~~~l---~~~g~~~i-l~Ntyhl~~~pg~-------~~i~~~gGlh~fl~~~~~ilTDSGgf 97 (378)
-++|+|+.+.|-..- .+.+.+ .+.|++++ |.=.|--=.-.|+ +.++.--.+.+.+.+
T Consensus 10 ~~alI~yitaG~P~~e~t~~~l~~l~~~GaDiiElGiPfSDP~ADGPvIq~a~~rAL~~G~~~~~~~~~----------- 78 (262)
T PRK13127 10 EGALVPYLVAGDPDPEATLEFVKALVKGGADVIELGIPFSDPVADGPTIQAADVRALSAGMKIDKYFEL----------- 78 (262)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHH-----------
T ss_conf 965898862708998999999999997699999978988887765799999999999769979999999-----------
Q ss_pred CCCHHHHCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 21012210223333102101445415871299999998732897799601213322115899999998899999998851
Q gi|254780178|r 98 QVMSLSKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAF 177 (378)
Q Consensus 98 Qv~sl~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~ 177 (378)
+...++..+..+-+.++++ -......|++++--...|.|=.+.-|-+. + ....|.+.|.+.
T Consensus 79 ----~~~~r~~~~~pivlM~Y~N-~i~~~G~e~F~~~~~~~GvdGlIipDLP~------e-------E~~~~~~~~~~~- 139 (262)
T PRK13127 79 ----VKELRVDSSVPLVLMTYYN-PVYRYGVEKFVKKAAEAGVSGLIIPDLPV------E-------EATDLREACKKH- 139 (262)
T ss_pred ----HHHHHCCCCCCEEEEECCH-HHHHCCHHHHHHHHHHCCCCEEEECCCCH------H-------HHHHHHHHHHHC-
T ss_conf ----9997456998879996613-88760899999999875997699669997------8-------999999999855-
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-CC---CHHHHHHHHHHHHHCCCHHHHEEC-CCCHHH
Q ss_conf 3588860554023444366899998876422234676641356-75---167899899989850770331002-541018
Q gi|254780178|r 178 GNQPGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAV-GE---PQEVMLHILSNVLPILPVERPHYL-MGVGTP 252 (378)
Q Consensus 178 ~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~-ge---~~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P 252 (378)
+-.+...|.- ...+.|.+.+...+ .+| -|.++-.++ |. ..+...+.+..+.... +.|..+ ||+.+|
T Consensus 140 ----gi~~I~lvaP-tt~~~Ri~~i~~~a-~gF-iY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t--~~Pv~vGFGI~~~ 210 (262)
T PRK13127 140 ----GLDLVFLVAP-TTPEERLKRIDEAS-SGF-VYLVSRLGVTGAREDVEEATFDLLKRARTTC--KNKIAVGFGISKG 210 (262)
T ss_pred ----CCEEEEEECC-CCCHHHHHHHHHCC-CCE-EEEEECCCCCCCCCCCHHHHHHHHHHHHHCC--CCCEEEEEEECCH
T ss_conf ----8327998589-99899999998438-981-8998435556876555288999999999617--9984899334889
Q ss_pred HHHHHHHHCCCCEEE
Q ss_conf 999999853898366
Q gi|254780178|r 253 DDILKSVSYGVDMFD 267 (378)
Q Consensus 253 ~~i~~~v~~GvDlFD 267 (378)
+++....+.|.|-.-
T Consensus 211 e~v~~~~~~~aDGvI 225 (262)
T PRK13127 211 EHAEELLDAGADGVI 225 (262)
T ss_pred HHHHHHHHCCCCEEE
T ss_conf 999999864999999
No 44
>TIGR01962 NuoD NADH dehydrogenase I, D subunit; InterPro: IPR010219 This entry recognises specifically the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a subunit C/D fusion.; GO: 0016651 oxidoreductase activity acting on NADH or NADPH, 0006118 electron transport.
Probab=70.97 E-value=7.1 Score=19.31 Aligned_cols=108 Identities=22% Similarity=0.281 Sum_probs=53.4
Q ss_pred HHHHHHHHCCCCCCC---HHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCCC
Q ss_conf 234676641356751---67899899989850770331002541018999999853898366200000233200245621
Q gi|254780178|r 209 DLKGYAIGGLAVGEP---QEVMLHILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFG 285 (378)
Q Consensus 209 ~~~G~aIgGl~~ge~---~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t~~g 285 (378)
.-..+-|||++...| .. +.+-|.+-++.+|...-- +-..-+-=-|...-..||=..+-...-...-.|-.|=..|
T Consensus 148 ~~~y~R~GGV~~DLPdf~~n-~l~~i~~Fl~~~p~~l~~-~e~Ll~~NrIwk~R~~gVGvv~~~~A~~~G~tG~~LRgsG 225 (408)
T TIGR01962 148 HSAYFRIGGVAEDLPDFMEN-WLEEIREFLEQFPKRLKD-YETLLNENRIWKQRTQGVGVVSAKDALDWGLTGPMLRGSG 225 (408)
T ss_pred CCCCCCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHCHHHHHHCCCCCEECHHHHHHCCCCCCCHHHCC
T ss_conf 66763458713210345433-899999999861455999-9999872616775215763007699984489864521236
Q ss_pred C-HHHHHHH----HC-CCCC-CCCCCCCCHHHCCCCHHHHHHHHHCCCH
Q ss_conf 0-0210123----22-3688-5598669813368898999886857850
Q gi|254780178|r 286 K-INLRNAR----HI-DDMR-PLDAESHCSALRDYSRAYLHHLLRVNES 327 (378)
Q Consensus 286 ~-i~l~~~~----~~-~d~~-pi~~~C~C~~C~~ytraYl~HL~~~~E~ 327 (378)
. +|+++++ |. -||. |...+|+||+ |.+++..||
T Consensus 226 i~~D~RK~~PY~~Y~~~DFdVp~~~~GDcY~---------Ry~~r~~E~ 265 (408)
T TIGR01962 226 IDWDIRKEEPYEGYDELDFDVPVGENGDCYD---------RYLLRVLEM 265 (408)
T ss_pred CCCCCCCCCCCCHHHCCCCCCCCCCCCCCHH---------HHHHHHHHH
T ss_conf 4202566776320202656543188886204---------556678889
No 45
>pfam06180 CbiK Cobalt chelatase (CbiK). This family consists of several bacterial cobalt chelatase (CbiK) proteins (EC:4.99.1.-).
Probab=70.08 E-value=3.2 Score=21.62 Aligned_cols=64 Identities=19% Similarity=0.271 Sum_probs=42.3
Q ss_pred ECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCH---HHHEECCCCHHHHH
Q ss_conf 02344436689999887642223467664135675167899899989850770---33100254101899
Q gi|254780178|r 188 IVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPV---ERPHYLMGVGTPDD 254 (378)
Q Consensus 188 iVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~---~kPr~l~G~G~P~~ 254 (378)
+|.|-.|.++++.-.+. +.+|.-..+|- ++..+.+.+.+++..+.+.+|. +....+||-|+++.
T Consensus 82 ii~G~Ey~~l~~~v~~~--~~~F~~i~~g~-PLL~~~~D~~~v~~al~~~~~~~~~~~a~VlmGHGt~h~ 148 (256)
T pfam06180 82 IIPGEEYEKLKREVNKF--SPDFKRIKLGR-PLLDYPEDYEEVVEALKDQIPPLRKDEALVFMGHGTDHH 148 (256)
T ss_pred EECCHHHHHHHHHHHHH--HCCCCEEEEEC-CCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC
T ss_conf 43747699999999997--53188499731-566886899999999998453336898699981898985
No 46
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=68.82 E-value=8.7 Score=18.69 Aligned_cols=89 Identities=19% Similarity=0.256 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 58999999988999999988513588860554023444366899998876422234676641356751678998999898
Q gi|254780178|r 156 DKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVL 235 (378)
Q Consensus 156 ~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~ 235 (378)
.=++-+..+....|-.++.+.-++. ..+|.. .- .-..|++.+.+++...|-|++.... .+.+++.+.
T Consensus 78 lyel~e~~~~p~e~~~~Lke~a~~~--Gi~~~S----SP--fd~~svd~l~~~~~~ayKIaS~E~~-----~~plik~iA 144 (347)
T COG2089 78 LYELYEEAETPLEWHAQLKEYARKR--GIIFFS----SP--FDLTAVDLLESLNPPAYKIASGEIN-----DLPLIKYIA 144 (347)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHC--CEEEEE----CC--CCHHHHHHHHHCCCCEEEECCCCCC-----CHHHHHHHH
T ss_conf 9999998449999999999999872--938981----67--8878899998569983773474335-----758999999
Q ss_pred HCCCHHHHEEC-CCCHHHHHHHHHHH
Q ss_conf 50770331002-54101899999985
Q gi|254780178|r 236 PILPVERPHYL-MGVGTPDDILKSVS 260 (378)
Q Consensus 236 ~~LP~~kPr~l-~G~G~P~~i~~~v~ 260 (378)
..+||..| .|..+-.+|-.+|+
T Consensus 145 ---~~~kPiIlSTGma~~~ei~~av~ 167 (347)
T COG2089 145 ---KKGKPIILSTGMATIEEIEEAVA 167 (347)
T ss_pred ---HCCCCEEEECCCCCHHHHHHHHH
T ss_conf ---63997799746640777999999
No 47
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=66.82 E-value=10 Score=18.27 Aligned_cols=137 Identities=11% Similarity=0.025 Sum_probs=79.3
Q ss_pred HHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99998732897799601213322115899999998899999998851358886055402344436689999887642223
Q gi|254780178|r 131 SVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKELDL 210 (378)
Q Consensus 131 ~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~ 210 (378)
-++.....|.|++-....|+..+. .++..+++++. .- ....|........++.-.+.++.+.+.+.
T Consensus 92 dl~~a~~~gv~~vri~~~~te~d~--------~~~~i~~ak~~----G~--~v~~~~~~s~~~~~e~l~~~a~~~~~~Ga 157 (333)
T TIGR03217 92 DLKAAYDAGARTVRVATHCTEADV--------SEQHIGMAREL----GM--DTVGFLMMSHMTPPEKLAEQAKLMESYGA 157 (333)
T ss_pred HHHHHHHCCCCEEEEEECCCHHHH--------HHHHHHHHHHC----CC--EEEEEEEECCCCCHHHHHHHHHHHHHCCC
T ss_conf 999999669997898631667888--------99999999976----98--09999750568999999999999985699
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECC-----CCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCC
Q ss_conf 4676641356751678998999898507703310025-----41018999999853898366200000233200245
Q gi|254780178|r 211 KGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLM-----GVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFT 282 (378)
Q Consensus 211 ~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~-----G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t 282 (378)
+.+.|.--.-...-++..+++..+...+.++.|.-++ |. -.-.-+.|++.|+|.+|++.-=.-+|.|.+-|
T Consensus 158 d~I~i~DT~G~~~P~~v~~~v~~l~~~~~~~i~ig~H~HNnlGl-AvANslaAi~aGa~~VD~Ti~GlGe~aGNa~l 233 (333)
T TIGR03217 158 DCVYIVDSAGAMLPDDVRDRVRALKAVLKPETQVGFHAHHNLSL-AVANSIAAIEAGATRIDASLRGLGAGAGNAPL 233 (333)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCH-HHHHHHHHHHCCCCEEEECCCCCCCCCCCCHH
T ss_conf 99997596446899999999999998629975488986178772-99999999981999997627448898887349
No 48
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=66.02 E-value=4.5 Score=20.66 Aligned_cols=71 Identities=18% Similarity=0.457 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCEEEECCEEECCCC
Q ss_conf 98876422234676641356751678998999898507703310025410189999998538983662000002332
Q gi|254780178|r 201 SAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRH 277 (378)
Q Consensus 201 Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~ 277 (378)
+++++.+.+.||.-|+. ..|.|. .+.+.++.+..++. .+| +||+--=++|+ +.|+|..++-=-+.-|-+.|
T Consensus 200 ~~~~i~~~~pDGiflSN-GPGDP~-~~~~~i~~vr~l~~-~~P--ifGICLGHQll-alA~Gakt~KmkfGHrG~Nh 270 (356)
T PRK12838 200 SLEDIKNLNPDGIVLSN-GPGDPK-ELQPYLPTIKDLAS-SYP--ILGICLGHQLI-ALALGAETYKLPFGHRGANH 270 (356)
T ss_pred CCCHHHCCCCCEEEECC-CCCCHH-HHHHHHHHHHHHHC-CCC--EEEECHHHHHH-HHHHCCEEEECCCCCCCCCC
T ss_conf 75402324974899438-998968-87889999999974-988--89974889999-99709748641556688782
No 49
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=65.82 E-value=5.3 Score=20.15 Aligned_cols=65 Identities=17% Similarity=0.382 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCEEEECC
Q ss_conf 9887642223467664135675167899899989850770331002541018999999853898366200
Q gi|254780178|r 201 SAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDMFDCVM 270 (378)
Q Consensus 201 Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ 270 (378)
+++++.+.+.||..|+. ..|.|.. ..++++.+...+...+| +||+.-=++++ +.|+|..++-=.+
T Consensus 204 ~~~~I~~~~pDGIflSN-GPGDP~~-~~~~i~~ik~li~~~~P--ifGICLGHQll-alA~Ga~t~Km~f 268 (355)
T PRK12564 204 TAEEILALNPDGVFLSN-GPGDPAA-LDYAIEMIKELLEGKIP--IFGICLGHQLL-ALALGAKTYKMKF 268 (355)
T ss_pred CHHHHHCCCCCEEEECC-CCCCHHH-HHHHHHHHHHHHCCCCC--EEEECHHHHHH-HHHCCCEECCCCC
T ss_conf 76576414888899679-9999688-79999999998526987--89988879999-9971984420555
No 50
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=65.57 E-value=11 Score=18.11 Aligned_cols=207 Identities=15% Similarity=0.092 Sum_probs=99.0
Q ss_pred EECCCEEECCCCCCCCC-CCHHHHHHC--CCCEE-EEEHHHHHHCCCHHHHHHCCCCHHHCCCCCCEEECCCCCCCCHH-
Q ss_conf 40585741068685688-688999860--99899-93226657387689986527420110157722411454321012-
Q gi|254780178|r 28 IKTPAFMPVGTAGTVKA-MYFDQVRDL--GADVI-LGNAYHLMLRPGAERIARLGGLHKFIRWFKPILTDSGGFQVMSL- 102 (378)
Q Consensus 28 i~TP~flpv~t~g~v~~-lt~~~l~~~--g~~~i-l~Ntyhl~~~pg~~~i~~~gGlh~fl~~~~~ilTDSGgfQv~sl- 102 (378)
+.-|+|+|+.+.|-..- .+.+.++.+ +++++ +.=.|--=.-.|+ +|+++.- +-+. -|+..+.+
T Consensus 2 ~~r~ali~yitaG~P~~e~s~~~l~~l~~~aDiiElGiPfSDPvADGp-vIq~A~~--~Al~---------~g~~~~~i~ 69 (247)
T PRK13125 2 ISRPGLGVYLTAGWPNAETFLEAIDGLVGLVDFLELGIPPKNPKYDGP-VIRKAHR--EVSY---------WGLDYWSLL 69 (247)
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHH-HHHHHHH--HHHH---------CCCCHHHHH
T ss_conf 988658888718379989999999998647999997998898766609-9999999--9987---------699899999
Q ss_pred HHCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 21022333310210144541587129999999873289779960121332211589999999889999999885135888
Q gi|254780178|r 103 SKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPG 182 (378)
Q Consensus 103 ~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~ 182 (378)
...++..+..+-+.++++- .....+++++--+..|.|=++..|-+...+ ++...|.+.|.+. ....
T Consensus 70 ~~~r~~~~~pivlM~Y~N~--~~~g~e~F~~~~~~~GvdGvIipDLP~e~~----------ee~~~~~~~~~~~--gl~~ 135 (247)
T PRK13125 70 EEVRKKVGVPTYIMTYLED--YVGSLDDLLNTAKEVGARGVLFPDLLIDFP----------DELEKYVELIRRY--GLAP 135 (247)
T ss_pred HHHCCCCCCCEEEHHHHHH--HHHHHHHHHHHHHHCCCCEEEECCCCCCCH----------HHHHHHHHHHHHC--CCCE
T ss_conf 9850568998897298899--997699999999985997588338887546----------7899999999976--9846
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-HHHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHH
Q ss_conf 60554023444366899998876422234676641356751-67899899989850770331002-54101899999985
Q gi|254780178|r 183 KALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEP-QEVMLHILSNVLPILPVERPHYL-MGVGTPDDILKSVS 260 (378)
Q Consensus 183 ~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~-~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~ 260 (378)
-.|..+ ...+.|.+.+...+. +|-.+..-| ..|.. .....+.+..+..+.+ ++|..+ ||+.+|+++.....
T Consensus 136 I~lvsP----tt~~~ri~~i~~~s~-gFvY~~~~g-vTG~~~~~~~~~~i~~ik~~~~-~~Pv~vGFGI~t~e~v~~~~~ 208 (247)
T PRK13125 136 VFFTSP----KFPDRLIRRLSKLSP-LFIYLGLYP-ATGVELPVYVERNIKRVRELVG-DVYLVAGFAIDSPEDAAKALS 208 (247)
T ss_pred EEEECC----CCCHHHHHHHHHHCC-CEEEEEEEC-CCCCCCCCCHHHHHHHHHHHCC-CCCEEEECCCCCHHHHHHHHH
T ss_conf 999579----981999999998689-779999443-6788773259999999998569-998588328799999999985
Q ss_pred CCCCEEE
Q ss_conf 3898366
Q gi|254780178|r 261 YGVDMFD 267 (378)
Q Consensus 261 ~GvDlFD 267 (378)
.|.|-.-
T Consensus 209 ~~aDGvI 215 (247)
T PRK13125 209 AGADGVV 215 (247)
T ss_pred CCCCEEE
T ss_conf 5899999
No 51
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=62.59 E-value=12 Score=17.75 Aligned_cols=20 Identities=15% Similarity=0.257 Sum_probs=8.0
Q ss_pred HEECCCCH-HHHHHHHHHHCC
Q ss_conf 10025410-189999998538
Q gi|254780178|r 243 PHYLMGVG-TPDDILKSVSYG 262 (378)
Q Consensus 243 Pr~l~G~G-~P~~i~~~v~~G 262 (378)
.|.|.|.+ +|.++-....++
T Consensus 200 v~iLYGGSV~~~N~~~i~~~~ 220 (242)
T cd00311 200 VRILYGGSVNPENAAELLAQP 220 (242)
T ss_pred CCEEECCCCCHHHHHHHHCCC
T ss_conf 548960778988999995689
No 52
>PRK08318 dihydropyrimidine dehydrogenase; Validated
Probab=61.97 E-value=12 Score=17.68 Aligned_cols=40 Identities=15% Similarity=0.162 Sum_probs=23.4
Q ss_pred HHHHHHHHHC-CCHHHHEE-CCCCHHHHHHHHHHHCCCCEEE
Q ss_conf 9899989850-77033100-2541018999999853898366
Q gi|254780178|r 228 LHILSNVLPI-LPVERPHY-LMGVGTPDDILKSVSYGVDMFD 267 (378)
Q Consensus 228 ~~ii~~~~~~-LP~~kPr~-l~G~G~P~~i~~~v~~GvDlFD 267 (378)
.+.|..+... --.+.|.- +=|+.+-.|.++.+.+|.+..-
T Consensus 239 Lr~V~~i~~~~~~~~ipIiG~GGI~s~~Da~e~ilaGAsaVQ 280 (413)
T PRK08318 239 LNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQ 280 (413)
T ss_pred HHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHCCCCEE
T ss_conf 999999986346788377975685989999999982789216
No 53
>pfam04481 DUF561 Protein of unknown function (DUF561). Protein of unknown function found in a cyanobacterium, and the chloroplasts of algae.
Probab=61.25 E-value=3.6 Score=21.24 Aligned_cols=161 Identities=12% Similarity=0.091 Sum_probs=72.2
Q ss_pred EEECCCCCCHHHHHHHHHHHHHH----HHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHH-----HHEECCCCHHHHHHH
Q ss_conf 54023444366899998876422----234676641356751678998999898507703-----310025410189999
Q gi|254780178|r 186 FGIVQGGDNINLRSFSAERLKEL----DLKGYAIGGLAVGEPQEVMLHILSNVLPILPVE-----RPHYLMGVGTPDDIL 256 (378)
Q Consensus 186 fgiVqGG~~~dLR~~Sa~~l~~~----~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~-----kPr~l~G~G~P~~i~ 256 (378)
++|..-+..+++--.|.+.=+.+ +||-|-=-|- --+.++..++...+..+||.- -|-.|.=--.-..-.
T Consensus 62 lPiCVSaVep~~f~~aV~AGA~lvEIGNfDsFY~qGr--~f~a~eVL~Lt~~Tr~LLP~~~LsVTVPHiL~ld~Qv~LA~ 139 (243)
T pfam04481 62 IPICVSAVEPELLYEAVLAGADLVEIGNFDSFYKQGR--VLSVCEIIALVKETRKLLPHTPLCVTIPHILKLKEQINLAK 139 (243)
T ss_pred CCEEEECCCHHHHHHHHHHCCCEEEECCHHHHHHCCC--EECHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf 9858604797888999982787898645364765476--64499999999999976899844774576356789999999
Q ss_pred HHHHCCCCEEE-----ECCEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCC--CCCCHHHC---CCCHHHHHHHHHCCC
Q ss_conf 99853898366-----200000233200245621002101232236885598--66981336---889899988685785
Q gi|254780178|r 257 KSVSYGVDMFD-----CVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDA--ESHCSALR---DYSRAYLHHLLRVNE 326 (378)
Q Consensus 257 ~~v~~GvDlFD-----~~~ptr~Ar~G~~~t~~g~i~l~~~~~~~d~~pi~~--~C~C~~C~---~ytraYl~HL~~~~E 326 (378)
.++..|+|++- |+.|+...-.|..-..--++-=..+--+.-.-|+.+ +-++-||- .+-- +.=
T Consensus 140 ~L~~~GaDiIQTEGgtss~p~~~g~~glIekaapTLAaay~IS~~v~vPVlcASGlS~vT~PmAiaaGA--------sGV 211 (243)
T pfam04481 140 QLESLGIDLIQTEGKITSISKNHCVNDLIEKSASTLASTYEISKHVQLPVICASGLSDVTVPLAFSYGA--------SGI 211 (243)
T ss_pred HHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHCCC--------CCC
T ss_conf 999818877872898777888842577798875889999999861787667546764214788997487--------710
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 089999999999999999999999998599
Q gi|254780178|r 327 SLAGMILSWANLAYYQDLMKEIRSAIAEDC 356 (378)
Q Consensus 327 ~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~ 356 (378)
-.|.-.-.+.|.--|...++++++++...+
T Consensus 212 GVGSavn~Lnd~~aMva~vr~l~~al~~s~ 241 (243)
T pfam04481 212 GIGSAVSKLNDIEKMVNYISEIKKAISGTR 241 (243)
T ss_pred CHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 065776500249999999999999973386
No 54
>pfam12167 DUF3596 Domain of unknown function (DUF3596). This presumed domain is functionally uncharacterized.This domain family is found in bacteria and viruses, and is approximately 90 amino acids in length. The family is found in association with pfam00589.
Probab=58.87 E-value=9.9 Score=18.32 Aligned_cols=32 Identities=25% Similarity=0.150 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 999999999999999999998599899999999
Q gi|254780178|r 333 LSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQ 365 (378)
Q Consensus 333 l~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~~ 365 (378)
-|-.|+.....+.++|...|..|+|+ |.+.|-
T Consensus 30 dT~~Nrk~a~~~~~~I~~eI~~G~Fd-Ya~~FP 61 (88)
T pfam12167 30 DTPANRKKAERLLARIEAEIALGTFD-YAEYFP 61 (88)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCC-HHHHCC
T ss_conf 99889999999999999999819651-898792
No 55
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=58.69 E-value=14 Score=17.31 Aligned_cols=31 Identities=29% Similarity=0.518 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHHHCCCC-------EEEECCEEECCCC
Q ss_conf 541018999999853898-------3662000002332
Q gi|254780178|r 247 MGVGTPDDILKSVSYGVD-------MFDCVMPTRAGRH 277 (378)
Q Consensus 247 ~G~G~P~~i~~~v~~GvD-------lFD~~~ptr~Ar~ 277 (378)
=|+.+|-|-.....+|.| +|-|.-|...|+.
T Consensus 215 GGvATPADAALMM~LGadGVFVGSGIFKS~~P~~~A~A 252 (296)
T COG0214 215 GGVATPADAALMMQLGADGVFVGSGIFKSSNPEKRAKA 252 (296)
T ss_pred CCCCCHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHH
T ss_conf 67688167999998189847865643378998999999
No 56
>TIGR01235 pyruv_carbox pyruvate carboxylase; InterPro: IPR005930 In the postabsorptive state, blood glucose concentration is kept constant by a combination of glycogenolysis and gluconeogenesis. During prolonged fasting, when hepatic glycogen is exhausted, gluconeogenesis becomes the only source of plasma glucose. Gluconeogenesis (the production of new glucose molecules) occurs mainly in liver and, to a small extent, in kidneys. Pyruvate carboxylase (6.4.1.1 from EC), a member of the biotin-dependent enzyme family, catalyses the ATP-dependent carboxylation of pyruvate to oxaloacetate, thus playing a crucial role in gluconeogenesis. ATP + pyruvate + HCO3- = ADP + phosphate + oxaloacetate Most well characterised forms of active enzyme consist of four identical subunits arranged in a tetrahedron-like structure. Each subunit contains three functional domains: the biotin carboxylation domain, the transcarboxylation domain and the biotin carboxyl carrier domain.; GO: 0004736 pyruvate carboxylase activity, 0006094 gluconeogenesis, 0005737 cytoplasm.
Probab=58.38 E-value=14 Score=17.27 Aligned_cols=224 Identities=20% Similarity=0.202 Sum_probs=112.5
Q ss_pred CCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE-
Q ss_conf 3333102101445415871299999998732897799601213322115899999998899999998851358886055-
Q gi|254780178|r 108 IDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALF- 186 (378)
Q Consensus 108 ~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lf- 186 (378)
...+||.|.++.|.-. +.+++--..-|-||+=.||-+ ++=..-+-.-.||..+-.-.+.+ ..|
T Consensus 632 RgANaVGYtnYPDNvv-----~~Fv~qa~~~GiD~FRvFDsL-N~l~~l~l~~dAv~~~gkv~EAA----------icYt 695 (1169)
T TIGR01235 632 RGANAVGYTNYPDNVV-----KKFVKQAAQSGIDIFRVFDSL-NWLENLKLGMDAVKEAGKVVEAA----------ICYT 695 (1169)
T ss_pred HHHHHHCCCCCCHHHH-----HHHHHHHHHCCCEEEECCCCC-CCCCCCHHHHHHHHHCCCEEEEE----------EEEE
T ss_conf 5410000247753489-----999998884683078700111-33210201636777509979999----------7520
Q ss_pred E-ECCCCC---CHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHCCCHHHHEECCCC---H-HHHHHHH
Q ss_conf 4-023444---36689999887642223467664135-675167899899989850770331002541---0-1899999
Q gi|254780178|r 187 G-IVQGGD---NINLRSFSAERLKELDLKGYAIGGLA-VGEPQEVMLHILSNVLPILPVERPHYLMGV---G-TPDDILK 257 (378)
Q Consensus 187 g-iVqGG~---~~dLR~~Sa~~l~~~~~~G~aIgGl~-~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~---G-~P~~i~~ 257 (378)
| |.|-+. +++==..=|++|.+.+....+|=-.+ +..|.. =+.+|.+.. .--+|-|.|++.- | ---.++.
T Consensus 696 GDil~~~r~KYdL~YYt~lA~eL~~aGaHIL~iKDMAGlLKP~A-Ak~L~~ALr-e~~PD~PiH~HTHDtSG~ava~~~a 773 (1169)
T TIGR01235 696 GDILDPARKKYDLKYYTNLAEELVKAGAHILGIKDMAGLLKPAA-AKLLIKALR-EKIPDLPIHLHTHDTSGAAVASMLA 773 (1169)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEHHHHCCCHHHH-HHHHHHHHH-HCCCCCCEEEECCCCHHHHHHHHHH
T ss_conf 03268889743778899999999970980343010112442899-999999997-3279985686266612689999999
Q ss_pred HHHCCCCEEEECCEEECCCC------CCCCCCCC-----CHHHHH----HHHCCCCCCCCCCCCC--HHHCCCCHHHHHH
Q ss_conf 98538983662000002332------00245621-----002101----2322368855986698--1336889899988
Q gi|254780178|r 258 SVSYGVDMFDCVMPTRAGRH------GLAFTRFG-----KINLRN----ARHIDDMRPLDAESHC--SALRDYSRAYLHH 320 (378)
Q Consensus 258 ~v~~GvDlFD~~~ptr~Ar~------G~~~t~~g-----~i~l~~----~~~~~d~~pi~~~C~C--~~C~~ytraYl~H 320 (378)
||+.|+|+.|-+.=+...-- +.+-+=.| -+|+.. +.|.+..+-+-..-.| ---.-+|--|+|
T Consensus 774 aveAGvDvvDvAv~smSG~TSQPS~~a~~~aL~G~~~dpgln~~~v~~ls~YWe~~R~~Ya~FEstt~lKsP~~evY~h- 852 (1169)
T TIGR01235 774 AVEAGVDVVDVAVDSMSGLTSQPSLGALVAALEGSERDPGLNVEDVRELSAYWEEVRKLYAAFESTTDLKSPDSEVYLH- 852 (1169)
T ss_pred HHHCCCCEEHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-
T ss_conf 9875886114567641045003338999997278989888898999898788999974421111036788778543335-
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 68578508999999999999999999999999859989999999
Q gi|254780178|r 321 LLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQT 364 (378)
Q Consensus 321 L~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~ 364 (378)
||=|.++ =||.+ +.|.==...+|.+-++.|
T Consensus 853 -----E~PGGQy---tNL~~------QA~~lGLg~~w~~vk~aY 882 (1169)
T TIGR01235 853 -----EIPGGQY---TNLQF------QAKSLGLGDRWEEVKKAY 882 (1169)
T ss_pred -----CCCCCHH---HHHHH------HHHHCCCHHHHHHHHHHH
T ss_conf -----7885044---67999------986548312689999999
No 57
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=58.19 E-value=11 Score=17.98 Aligned_cols=80 Identities=18% Similarity=0.099 Sum_probs=41.7
Q ss_pred EEEECC-CCC-CHHHHHHHHHHHHHHHHHHHHHH-CC-CCCCCHHHHHHHHHHHHHCCCHHHHEECC-CCHHHHHHHHHH
Q ss_conf 554023-444-36689999887642223467664-13-56751678998999898507703310025-410189999998
Q gi|254780178|r 185 LFGIVQ-GGD-NINLRSFSAERLKELDLKGYAIG-GL-AVGEPQEVMLHILSNVLPILPVERPHYLM-GVGTPDDILKSV 259 (378)
Q Consensus 185 lfgiVq-GG~-~~dLR~~Sa~~l~~~~~~G~aIg-Gl-~~ge~~~~~~~ii~~~~~~LP~~kPr~l~-G~G~P~~i~~~v 259 (378)
+-.++. +.. ..|+..+.++...+.+.+..-.+ |+ ..+-+.+.+..+... ++...+.... |+.++.+....+
T Consensus 116 ~kvi~e~~~l~~~~~i~~a~~~~~~~GadfvKtstG~~~~~at~~~v~~m~~~----~~~~~~vk~sGGi~~~~~a~~~l 191 (201)
T cd00945 116 LKVILETRGLKTADEIAKAARIAAEAGADFIKTSTGFGGGGATVEDVKLMKEA----VGGRVGVKAAGGIKTLEDALAAI 191 (201)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHH----HCCCCEEECCCCCCCHHHHHHHH
T ss_conf 79996167789999999999999980998798558878898999999999998----28786386358979999999999
Q ss_pred HCCCCEEEE
Q ss_conf 538983662
Q gi|254780178|r 260 SYGVDMFDC 268 (378)
Q Consensus 260 ~~GvDlFD~ 268 (378)
..|.+-+-.
T Consensus 192 ~aGa~~igt 200 (201)
T cd00945 192 EAGADGIGT 200 (201)
T ss_pred HHCCCEEEC
T ss_conf 828653537
No 58
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase; InterPro: IPR011284 This entry represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis found in many plant and bacterial species. This enzyme is involved in type II fatty acid biosynthesis, where the individual metabolic transformations are carried out by different enzymes rather than by a single enzyme as occurs in type I fatty acid biosynthesis . Structural studies show that the enzyme is a tetramer which forms a typical Rossman fold , . Unlike other members of the short-chain dehydrogenase/reductase superfamily, the enzyme undergoes a marked conformational change upon binding of the NADP(H)cofactor. This conformational change aligns the side chains of the catalytic triad at the active site in an active conformation and increases the affinity of the enzyme for its substrate.; GO: 0004316 3-oxoacyl-[acyl-carrier-protein] reductase activity, 0051287 NAD binding, 0006633 fatty acid biosynthetic process.
Probab=57.17 E-value=8.4 Score=18.79 Aligned_cols=54 Identities=20% Similarity=0.426 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHH------HHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHH
Q ss_conf 89999887642223------46766413567516789989998985077033100254101899999985
Q gi|254780178|r 197 LRSFSAERLKELDL------KGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGVGTPDDILKSVS 260 (378)
Q Consensus 197 LR~~Sa~~l~~~~~------~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~ 260 (378)
+-+--|+|++.++. +|| | ....+..+--++-+.....+|-.+- |.|+||..+|+
T Consensus 157 ftKSlAkElasRnItVNaVAPGF-I---~TdMT~~L~e~~~~~~l~~IPLgR~------G~pEeVA~~v~ 216 (238)
T TIGR01830 157 FTKSLAKELASRNITVNAVAPGF-I---ETDMTDKLSEKVKKAMLSQIPLGRF------GTPEEVANAVA 216 (238)
T ss_pred HHHHHHHHCCCCCCEEEEECCCC-C---CCCCCHHCCHHHHHHHHHCCCCCCC------CCHHHHHHHHH
T ss_conf 99999986036870588874899-8---9700021698899999852772326------77656999999
No 59
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=56.63 E-value=15 Score=17.08 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=8.4
Q ss_pred HEECCCCHHHHHHHHHHHCCCCE
Q ss_conf 10025410189999998538983
Q gi|254780178|r 243 PHYLMGVGTPDDILKSVSYGVDM 265 (378)
Q Consensus 243 Pr~l~G~G~P~~i~~~v~~GvDl 265 (378)
|...+..|....+......|+|.
T Consensus 242 piI~f~kg~~~~l~~~~~~~~d~ 264 (347)
T PRK00115 242 PVILFPKGAGELLEAMAETGVDA 264 (347)
T ss_pred CEEEECCCCHHHHHHHHHCCCCE
T ss_conf 87996389605689998569988
No 60
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=56.61 E-value=15 Score=17.08 Aligned_cols=148 Identities=15% Similarity=0.173 Sum_probs=72.4
Q ss_pred HCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 10223333102101445415871299999998732897799601213322115899999998899999998851358886
Q gi|254780178|r 104 KLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGK 183 (378)
Q Consensus 104 ~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~ 183 (378)
.+........+||-+..+.+. ++ ++.++-.+..|...++. +.++|....+. +- ..++|+.+ ..+..
T Consensus 109 ei~~~~~~~~wfQLY~~~d~~-~~-~~li~rA~~aG~~al~l-TvD~p~~g~R~----~w-~~i~~l~~------~~~~p 174 (299)
T cd02809 109 EVAAAAPGPRWFQLYVPRDRE-IT-EDLLRRAEAAGYKALVL-TVDTPVLGRRL----TW-DDLAWLRS------QWKGP 174 (299)
T ss_pred HHHHHCCCCEEEEEECCCCHH-HH-HHHHHHHHHCCCCEEEE-ECCCCCCCCCC----CH-HHHHHHHH------HCCCC
T ss_conf 999744898467764369999-99-99999999859998999-70589878879----99-99999998------66998
Q ss_pred EEE-EECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC---CHHHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHH
Q ss_conf 055-402344436689999887642223467664135675---167899899989850770331002-541018999999
Q gi|254780178|r 184 ALF-GIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGE---PQEVMLHILSNVLPILPVERPHYL-MGVGTPDDILKS 258 (378)
Q Consensus 184 ~lf-giVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge---~~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~ 258 (378)
.+. || +..+-|+...+.+++|..++. +-|- ...--.+++..+.+.+-..-|.++ -|+-+-.||+.+
T Consensus 175 ~i~KGi--------~~~~DA~~a~~~G~dgI~VSN-HGGRqlD~~p~~i~~L~~i~~~v~~~~~v~~DgGvR~G~Dv~KA 245 (299)
T cd02809 175 LILKGI--------LTPEDALRAVDAGADGIVVSN-HGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKA 245 (299)
T ss_pred EEEECC--------CCHHHHHHHHHCCCCEEEECC-CCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHH
T ss_conf 799727--------889999999985998899728-87333688877899999999985467289971884753689999
Q ss_pred HHCCCCEEEECCEEEC
Q ss_conf 8538983662000002
Q gi|254780178|r 259 VSYGVDMFDCVMPTRA 274 (378)
Q Consensus 259 v~~GvDlFD~~~ptr~ 274 (378)
++||.|..=.-=|..+
T Consensus 246 laLGA~~V~iGRp~l~ 261 (299)
T cd02809 246 LALGADAVLIGRPFLY 261 (299)
T ss_pred HHCCCCEEEECHHHHH
T ss_conf 9769988987789999
No 61
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=56.60 E-value=15 Score=17.08 Aligned_cols=138 Identities=16% Similarity=0.135 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHCCC--CEEEEEHH-HCCCCCCHH-HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 29999999873289--77996012-133221158-999999988999999988513588860554023444366899998
Q gi|254780178|r 127 SPEESVHIQNLLGS--DIQMQLDE-CLALPAEDK-ELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSA 202 (378)
Q Consensus 127 tpe~~i~~q~~lg~--DI~~~LD~-~~~~~~~~k-~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa 202 (378)
..++|++..+.+.+ |.++ +.. |+....-+. ...+.+++..++..+..... .....+|-=+---...+.-..-+
T Consensus 146 ~~~Dy~~~~~~l~~~aDy~~-iNiSsPNt~glr~lq~~~~l~~ll~~v~~~~~~~--~~~~Pi~vKlsPD~~~~~i~~i~ 222 (327)
T cd04738 146 AVEDYVIGVRKLGPYADYLV-VNVSSPNTPGLRDLQGKEALRELLTAVKEERNKL--GKKVPLLVKIAPDLSDEELEDIA 222 (327)
T ss_pred HHHHHHHHHHHHCCCCCEEE-EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC--CCCCCEEEEECCCCCHHHHHHHH
T ss_conf 89999999998535577899-9546889845100268899999999999999853--77886699817997667899999
Q ss_pred HHHHHHHHHHHHH-------------------HCCCCCCCHHHHHHHHHHHHHCCCHHHHEECC-CCHHHHHHHHHHHCC
Q ss_conf 8764222346766-------------------41356751678998999898507703310025-410189999998538
Q gi|254780178|r 203 ERLKELDLKGYAI-------------------GGLAVGEPQEVMLHILSNVLPILPVERPHYLM-GVGTPDDILKSVSYG 262 (378)
Q Consensus 203 ~~l~~~~~~G~aI-------------------gGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~-G~G~P~~i~~~v~~G 262 (378)
+.+.+.+++|+.+ ||++.-.-++.-.++|..+...++.+-|.--. |+-+++|..+.+..|
T Consensus 223 ~~~~~~g~dGvi~tNTt~~r~~~~~~~~~~~~GGlSG~pl~~~s~~~v~~v~~~~~~~~pIIgvGGI~s~~Da~e~i~aG 302 (327)
T cd04738 223 DVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAG 302 (327)
T ss_pred HHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCC
T ss_conf 99997399789995885554212456555666863640678999999999999749998199988979999999999869
Q ss_pred CCEEE
Q ss_conf 98366
Q gi|254780178|r 263 VDMFD 267 (378)
Q Consensus 263 vDlFD 267 (378)
.|++-
T Consensus 303 AslVQ 307 (327)
T cd04738 303 ASLVQ 307 (327)
T ss_pred CCHHH
T ss_conf 96998
No 62
>PRK00685 metal-dependent hydrolase; Provisional
Probab=56.47 E-value=15 Score=17.07 Aligned_cols=13 Identities=31% Similarity=0.340 Sum_probs=6.5
Q ss_pred HHHHHCCCCEEEE
Q ss_conf 9987328977996
Q gi|254780178|r 133 HIQNLLGSDIQMQ 145 (378)
Q Consensus 133 ~~q~~lg~DI~~~ 145 (378)
++-+..+||+++.
T Consensus 151 ~i~~~~~pDlall 163 (228)
T PRK00685 151 LIGELHQPDIALL 163 (228)
T ss_pred HHHHHCCCCEEEE
T ss_conf 9776559969999
No 63
>pfam05690 ThiG Thiazole biosynthesis protein ThiG. This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway.
Probab=56.29 E-value=15 Score=17.05 Aligned_cols=115 Identities=25% Similarity=0.349 Sum_probs=59.5
Q ss_pred CHHHHHHH----HHHCCCCEE---EEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 29999999----873289779---96012133221158999999988999999988513588860554023444366899
Q gi|254780178|r 127 SPEESVHI----QNLLGSDIQ---MQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRS 199 (378)
Q Consensus 127 tpe~~i~~----q~~lg~DI~---~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~ 199 (378)
|.++.++. .+.++.|++ +.-|+-+-.+++.+ |.+-++...+ ++=..++-+ ..|+-.
T Consensus 73 tA~EAVr~A~laRE~~~t~wIKLEVi~D~~~LlPD~~e--------tl~Aae~Lv~-----eGF~VlpY~----~~D~v~ 135 (246)
T pfam05690 73 TAEEAVRTARLAREAFGTNWIKLEVIGDSKTLLPDPIE--------TLKAAEILVK-----EGFTVLPYT----TDDPVL 135 (246)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHH--------HHHHHHHHHH-----CCCEEEEEC----CCCHHH
T ss_conf 89999999999999709974899982698877988789--------9999999997-----899898861----799899
Q ss_pred HHHHHHHHHHH-----HHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEE
Q ss_conf 99887642223-----467664135675167899899989850770331002-54101899999985389836
Q gi|254780178|r 200 FSAERLKELDL-----KGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMF 266 (378)
Q Consensus 200 ~Sa~~l~~~~~-----~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlF 266 (378)
++.+.+.+. -|=.||. ..|-......++| .+.+ +-|..+ -|+|.|-+-..+.++|.|-.
T Consensus 136 --akrLed~Gc~avMPlgsPIGS-g~Gl~n~~~l~~i---~e~~--~vPvIVDAGiG~pS~Aa~aMElG~DaV 200 (246)
T pfam05690 136 --ARRLEEAGCAAVMPLGAPIGS-GLGLRNPENLRII---IEEA--DVPVIVDAGIGTPSDAAQAMELGADAV 200 (246)
T ss_pred --HHHHHHCCCEEEEECCCCCCC-CCCCCCHHHHHHH---HHHC--CCCEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf --999987598498622440136-8886899999999---9967--998898489896788999997456777
No 64
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=56.09 E-value=15 Score=17.03 Aligned_cols=115 Identities=27% Similarity=0.373 Sum_probs=57.8
Q ss_pred CHHHHHHHH----HHCCCCEE---EEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 299999998----73289779---96012133221158999999988999999988513588860554023444366899
Q gi|254780178|r 127 SPEESVHIQ----NLLGSDIQ---MQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRS 199 (378)
Q Consensus 127 tpe~~i~~q----~~lg~DI~---~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~ 199 (378)
|.|+.+..- +.++.|++ +.-|..+-.++..+ |.+-++...+ ++=..++-+ +.|+-.
T Consensus 81 taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~e--------tl~Aae~Lv~-----eGF~VlPY~----~dD~v~ 143 (262)
T COG2022 81 TAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIE--------TLKAAEQLVK-----EGFVVLPYT----TDDPVL 143 (262)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHH--------HHHHHHHHHH-----CCCEEEECC----CCCHHH
T ss_conf 89999999999999706984899993687654887578--------9999999986-----798885036----887899
Q ss_pred HHHHHHHHHHH-----HHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEE
Q ss_conf 99887642223-----467664135675167899899989850770331002-54101899999985389836
Q gi|254780178|r 200 FSAERLKELDL-----KGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMF 266 (378)
Q Consensus 200 ~Sa~~l~~~~~-----~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlF 266 (378)
++.+.+.+. -|=.||. ..|-......+++ .+.. +-|..+ -|+|.|.+-..+.++|+|-.
T Consensus 144 --arrLee~GcaavMPl~aPIGS-g~G~~n~~~l~ii---ie~a--~VPviVDAGiG~pSdAa~aMElG~DaV 208 (262)
T COG2022 144 --ARRLEEAGCAAVMPLGAPIGS-GLGLQNPYNLEII---IEEA--DVPVIVDAGIGTPSDAAQAMELGADAV 208 (262)
T ss_pred --HHHHHHCCCEEECCCCCCCCC-CCCCCCHHHHHHH---HHHC--CCCEEEECCCCCHHHHHHHHHHCCCEE
T ss_conf --999986496686335665667-8675788999999---9738--998898679897668899986055432
No 65
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=55.63 E-value=16 Score=16.98 Aligned_cols=115 Identities=26% Similarity=0.364 Sum_probs=59.4
Q ss_pred CHHHHHHH----HHHCCCCEE---EEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHH
Q ss_conf 29999999----873289779---96012133221158999999988999999988513588860554023444366899
Q gi|254780178|r 127 SPEESVHI----QNLLGSDIQ---MQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRS 199 (378)
Q Consensus 127 tpe~~i~~----q~~lg~DI~---~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~ 199 (378)
|.|+.++. .+.++.|++ +.-|+-+-.+++.+ |.+-++...+ ++=..++-+ ..|+-.
T Consensus 74 ta~EAvr~A~laRE~~~t~~IKLEVi~D~~~LlPD~~e--------Tl~Aae~Lv~-----~GF~VlpY~----~~D~v~ 136 (248)
T cd04728 74 TAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIE--------TLKAAEILVK-----EGFTVLPYC----TDDPVL 136 (248)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHH--------HHHHHHHHHH-----CCCEEEEEC----CCCHHH
T ss_conf 79999999999999848986999981797677988689--------9999999998-----899897867----889999
Q ss_pred HHHHHHHHHHHH-----HHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEE
Q ss_conf 998876422234-----67664135675167899899989850770331002-54101899999985389836
Q gi|254780178|r 200 FSAERLKELDLK-----GYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMF 266 (378)
Q Consensus 200 ~Sa~~l~~~~~~-----G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlF 266 (378)
++.+.+.+.. |=.||. ..|-......+++ .+.. +-|..+ -|+|.|-+-..+.++|+|-.
T Consensus 137 --akrLe~~Gc~avMPlgsPIGS-g~Gl~n~~~l~~i---~e~~--~vPvIVDAGiG~pS~Aa~aMElG~daV 201 (248)
T cd04728 137 --AKRLEDAGCAAVMPLGSPIGS-GQGLLNPYNLRII---IERA--DVPVIVDAGIGTPSDAAQAMELGADAV 201 (248)
T ss_pred --HHHHHHCCCEEEEECCCCCCC-CCCCCCHHHHHHH---HHHC--CCCEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf --999997495345204564347-9887999999999---9847--998898479997567899987265533
No 66
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=53.81 E-value=11 Score=18.01 Aligned_cols=42 Identities=21% Similarity=0.250 Sum_probs=29.6
Q ss_pred HHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCEEEECCEEECC
Q ss_conf 89998985077033100254101899999985389836620000023
Q gi|254780178|r 229 HILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAG 275 (378)
Q Consensus 229 ~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~A 275 (378)
++++.+.. ..--++.|+.+|.+|..+.++|.|+.-. +|....
T Consensus 100 ~v~~~a~~----~~i~~iPG~~TpsEi~~A~~~Ga~~vKl-FPA~~~ 141 (209)
T PRK06552 100 ETAKICNR----YQIPYLPGCMTVTEIVTALEAGVDIVKL-FPGSTV 141 (209)
T ss_pred HHHHHHHH----CCCCEECCCCCHHHHHHHHHCCCCEEEE-CCHHHC
T ss_conf 99999998----5996417979999999999869995885-833324
No 67
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=52.90 E-value=15 Score=17.12 Aligned_cols=71 Identities=15% Similarity=0.285 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCH-HHHEECCCCHHHHHHHHHHHCCCCEEEECCEEECCC
Q ss_conf 9887642223467664135675167899899989850770-331002541018999999853898366200000233
Q gi|254780178|r 201 SAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPV-ERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGR 276 (378)
Q Consensus 201 Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~-~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar 276 (378)
+++++...+.||.-|+. ..|.|. ...+.+..+..+|-. ..| +||+.-=++|+ +.|+|..++-=-+--|-+.
T Consensus 227 ~~~~I~~~~PDGIfLSN-GPGDP~-~~~~~i~~i~~li~~~~iP--ifGICLGHQlL-alA~GakT~KmkfGHrG~N 298 (383)
T CHL00197 227 TYQDIMAYQPDGILLSN-GPGDPS-TVHYGIKTVKKLIKKANIP--IFGICMGHQIL-SLALEAKTFKLKFGHRGLN 298 (383)
T ss_pred CCCHHHCCCCCEEEECC-CCCCHH-HHHHHHHHHHHHHHCCCCC--EEEECHHHHHH-HHHCCCEEEECCCCCCCCC
T ss_conf 51134256888899789-999978-9899999999999648997--89955889999-9973983756688877988
No 68
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=52.61 E-value=16 Score=16.98 Aligned_cols=70 Identities=19% Similarity=0.394 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCEEEECCEEECC
Q ss_conf 988764222346766413567516789989998985077033100254101899999985389836620000023
Q gi|254780178|r 201 SAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAG 275 (378)
Q Consensus 201 Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~A 275 (378)
+++++.+++.||.-|+. ..|.| +.....|..+..++-..+| +||+=-=++|+ +.|+|.+++---+--|-+
T Consensus 212 ~~eeIl~~~pDGiflSN-GPGDP-~~~~~~i~~ik~l~~~~iP--ifGICLGHQll-alA~Ga~T~KmkFGHrG~ 281 (368)
T COG0505 212 SAEEILALNPDGIFLSN-GPGDP-APLDYAIETIKELLGTKIP--IFGICLGHQLL-ALALGAKTYKMKFGHRGA 281 (368)
T ss_pred CHHHHHHHCCCEEEEEC-CCCCH-HHHHHHHHHHHHHHCCCCC--EEEECHHHHHH-HHHCCCCEEECCCCCCCC
T ss_conf 99999851899799748-99880-6778999999998646898--37886888999-986678643203688778
No 69
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=52.55 E-value=18 Score=16.65 Aligned_cols=51 Identities=16% Similarity=0.115 Sum_probs=33.5
Q ss_pred CCCCCCCHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 598669813368898999886857850899999999999999999999999985998999999999853
Q gi|254780178|r 301 LDAESHCSALRDYSRAYLHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQENWK 369 (378)
Q Consensus 301 i~~~C~C~~C~~ytraYl~HL~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~~~~~~ 369 (378)
|...-.|++|++-|-+ .++- -.-..+-+.||+-|.+|.=++-+.+|+...+
T Consensus 37 L~~~lRCpvCq~qsi~------~S~a------------~~A~dmR~~I~~~i~~G~sd~eI~~~l~~RY 87 (126)
T TIGR03147 37 LAKSLRCPQCQNQNLV------ESNS------------PIAYDLRHEVYSMVNEGKSNQQIIDFMTARF 87 (126)
T ss_pred HHHHCCCCCCCCCCHH------HCCH------------HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf 9981688777997740------0761------------9999999999999985999899999999970
No 70
>TIGR02082 metH methionine synthase; InterPro: IPR011822 Vitamin B12 dependent methionine synthase 2.1.1.13 from EC (5-methyltetrahydrofolate--homocysteine S-methyltransferase) catalyses the conversion of 5-methyltetrahydrofolate and L-homocysteine to tetrahydrofolate and L-methionine as the final step in de novo methionine biosynthesis. The enzyme requires methylcobalamin as a cofactor. In humans, defects in this enzyme are the cause of autosomal recessive inherited methylcobalamin deficiency (CBLG), which causes mental retardation, macrocytic anemia and homocystinuria. Mild deficiencies in activity may result in mild hyperhomocysteinemia, and mutations in the enzyme may be involved in tumorigenesis. Vitamin B12 dependent methionine synthase is found in prokaryotes and eukaryotes, but in prokaryotes the cofactor is cobalamin. This enzyme is a large protein composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and tetrahydrofolate , the third module binds the B12 cofactor , and the C-terminal module (activation domain) binds S-adenosylmethionine. The activation domain is essential for the reductive activation of the enzyme. During the catalytic cycle, the highly reactive cob(I)alamin intermediate can be oxidised to produce an inactive cob(II)alamin enzyme; the enzyme is then reactivated via reductive methylation by the activation domain . The activation domain adopts an unusual alpha/beta fold.Recent studies suggest that this enzyme exists as an ensemble of conformations with equilibria dependent on the oxidation and methylation state of the cobalamin and on the concentrations of substrates or products .; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0050897 cobalt ion binding, 0009086 methionine biosynthetic process.
Probab=52.40 E-value=18 Score=16.64 Aligned_cols=174 Identities=19% Similarity=0.224 Sum_probs=92.3
Q ss_pred CCCEEEEEHHHHHHCCCHHHHHHCCCCHHHCCCCC----CEEECCCCCCCCHHHHCCCCCCCC-EEEECCCCC---CEEE
Q ss_conf 99899932266573876899865274201101577----224114543210122102233331-021014454---1587
Q gi|254780178|r 54 GADVILGNAYHLMLRPGAERIARLGGLHKFIRWFK----PILTDSGGFQVMSLSKLCSIDEQG-VRFRSHIDG---SLYR 125 (378)
Q Consensus 54 g~~~il~Ntyhl~~~pg~~~i~~~gGlh~fl~~~~----~ilTDSGgfQv~sl~~~~~~~~~G-v~f~s~~dG---~~~~ 125 (378)
|+|++=.|- .-..+.|....+++ +...-+=|. |||-||.-|||+.-|=- .+--.+ |+.-|..|| .-.|
T Consensus 388 GAQilDiN~-D~~~lDg~~~M~~f--~~llA~ePdia~vPlMlDSs~~~vleaGLk-~~qGKcivNSislkdGDGPE~~F 463 (1265)
T TIGR02082 388 GAQILDINV-DDGMLDGVAAMKRF--LNLLASEPDIAKVPLMLDSSEWEVLEAGLK-CIQGKCIVNSISLKDGDGPEERF 463 (1265)
T ss_pred CCEEEEEEE-CCCCCCCHHHHHHH--HHHHCCCCCCCCCCCCCCCCHHHHHHHHHH-HCCCEEEEEEECCCCCCCHHHHH
T ss_conf 977989870-65536737899999--996268986021360005743799976243-03884687320256688848999
Q ss_pred ECHHHHHHHHHHCCCCEE-EEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE-----ECCCCCCHHHHH
Q ss_conf 129999999873289779-96012133221158999999988999999988513588860554-----023444366899
Q gi|254780178|r 126 VSPEESVHIQNLLGSDIQ-MQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFG-----IVQGGDNINLRS 199 (378)
Q Consensus 126 ltpe~~i~~q~~lg~DI~-~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfg-----iVqGG~~~dLR~ 199 (378)
+ +-+++.+..|+=|+ |++|+.--... .+|..+-..|-.+-+- +...-.+...||= |--| -+|-|+
T Consensus 464 ~---~~a~l~k~yGAavVvmafDEeGQA~t-~~~K~EI~~RAY~~lt---~~~gfpp~~IiFDPn~ltiaTG--iEEh~~ 534 (1265)
T TIGR02082 464 L---EKAKLIKEYGAAVVVMAFDEEGQART-ADRKIEICKRAYELLT---EKVGFPPEDIIFDPNILTIATG--IEEHRR 534 (1265)
T ss_pred H---HHHHHHHHCCCEEEEEECCCCHHHHH-HHHHHHHHHHHHHHHH---HHCCCCHHHCCCCCCHHCCCCC--CCCCHH
T ss_conf 9---99999984498489870154300103-7889999999999999---7448980220212131101147--642125
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCCH----------------HHHHHHHHHHCCC
Q ss_conf 998876422234676641356751678998999898507703310025410----------------1899999985389
Q gi|254780178|r 200 FSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGVG----------------TPDDILKSVSYGV 263 (378)
Q Consensus 200 ~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~G----------------~P~~i~~~v~~Gv 263 (378)
.. -.+.+.+.+++..||.-+ -..|+. |-.-+=+|+..|+
T Consensus 535 ya-----------------------~~fI~A~r~IK~~LP~a~--isgGvSNvSFsfrGn~a~R~a~hsVFLy~ai~aGm 589 (1265)
T TIGR02082 535 YA-----------------------IDFIEAIRWIKEELPDAK--ISGGVSNVSFSFRGNPAVREALHSVFLYHAIRAGM 589 (1265)
T ss_pred HH-----------------------HHHHHHHHHHHHHCCCCE--EECCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 67-----------------------899999999996589728--85340222126578718999986899999995146
Q ss_pred CE
Q ss_conf 83
Q gi|254780178|r 264 DM 265 (378)
Q Consensus 264 Dl 265 (378)
||
T Consensus 590 Dm 591 (1265)
T TIGR02082 590 DM 591 (1265)
T ss_pred CC
T ss_conf 10
No 71
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=51.75 E-value=18 Score=16.57 Aligned_cols=227 Identities=11% Similarity=0.043 Sum_probs=100.9
Q ss_pred CCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 31021014454158712999999987328977996012133221158999999988999999988513588860554023
Q gi|254780178|r 111 QGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQ 190 (378)
Q Consensus 111 ~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVq 190 (378)
+||.+-+.=||.+... +..-+....+..+.+|.|-.-...+.+.+.....+.+-..++++.... ......|.-.|+
T Consensus 90 d~vv~~~tCD~kkkm~--e~~~~~~p~~~~~~~~~lP~~~~~~~~~~~~~~E~~~~k~~LE~~~g~--~it~e~L~~aI~ 165 (377)
T TIGR03190 90 EGVTLTQSCIQYRQTF--GSWRQHVPTVKWDYYVPMPNEVQSPHARKAHYAEVQRFRVFLQTLTGK--EITDDMLRDALA 165 (377)
T ss_pred CEEEECCCCHHHHHHH--HHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHH
T ss_conf 1455137977889999--999974787661168718997678789999999999999999999789--889999999999
Q ss_pred CCCCHHHHHHHHHHHHHH------HHHHH-----HHHCCCCCCCHHHHHHHHHHHHHCCC------HHHHEECC-CCHH-
Q ss_conf 444366899998876422------23467-----66413567516789989998985077------03310025-4101-
Q gi|254780178|r 191 GGDNINLRSFSAERLKEL------DLKGY-----AIGGLAVGEPQEVMLHILSNVLPILP------VERPHYLM-GVGT- 251 (378)
Q Consensus 191 GG~~~dLR~~Sa~~l~~~------~~~G~-----aIgGl~~ge~~~~~~~ii~~~~~~LP------~~kPr~l~-G~G~- 251 (378)
.+-..|+ ..+++.++ +..|. ...+ ...++++..+.+......|+ ..+||.|. |+-.
T Consensus 166 --~~N~~R~-~lr~l~~l~~~~~~pisg~e~l~v~~~~--~f~d~~e~~~~l~~ll~~l~~~~~~~~~~~RIlvtG~~~~ 240 (377)
T TIGR03190 166 --VCDENRR-LLRELFDYRKEADPKVTGVEALYASLTA--QFIDKREHNEMLKKVLAALPSRKVERKTGARFMTIGSEND 240 (377)
T ss_pred --HHHHHHH-HHHHHHHHHCCCCCCCCHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
T ss_conf --9999999-9999999854498898889999999885--0687899999999999998606554679977999789999
Q ss_pred HHHHHHHHH-CCCCEE--EECCEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHH--HCC-CCHHHHHHHHHCC
Q ss_conf 899999985-389836--6200000233200245621002101232236885598669813--368-8989998868578
Q gi|254780178|r 252 PDDILKSVS-YGVDMF--DCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDAESHCSA--LRD-YSRAYLHHLLRVN 325 (378)
Q Consensus 252 P~~i~~~v~-~GvDlF--D~~~ptr~Ar~G~~~t~~g~i~l~~~~~~~d~~pi~~~C~C~~--C~~-ytraYl~HL~~~~ 325 (378)
...++..|+ .|..+. |+..-+|+-++-.. .....+.-=-.+|.+ .|.|++ ..+ .-..||..|.+..
T Consensus 241 ~~kl~~iIEe~G~~VV~de~C~G~R~~~~~~~-~~~dpl~alA~rYl~-------~~~C~~~~~pn~~R~~~i~~lvke~ 312 (377)
T TIGR03190 241 DIAFMAMVESVGATIVIDDQCSGTRYFWNASK-PEDDVIKAIAERYCD-------RPACPTKDYPVHTRYDHVLGLAKEY 312 (377)
T ss_pred CCHHHHHHHHCCCEEEEECCCCCCCCCCCCCC-CCCCHHHHHHHHHHC-------CCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 73599999986998999777775120057888-777799999999827-------8998788888045899999999996
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 50899999999999999999999999985
Q gi|254780178|r 326 ESLAGMILSWANLAYYQDLMKEIRSAIAE 354 (378)
Q Consensus 326 E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~ 354 (378)
.--|.+..++.--+.|.-....+|+++++
T Consensus 313 ~aDGVI~~~lkfCd~~~~E~~~l~~~l~~ 341 (377)
T TIGR03190 313 NVQGAIFLQQKFCDPHEGDYPDLKRHLEA 341 (377)
T ss_pred CCCEEEEEHHCCCCHHHHHHHHHHHHHHH
T ss_conf 88999983630688276618999999987
No 72
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=51.71 E-value=18 Score=16.57 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=18.6
Q ss_pred EECCCCHHHHHHHHHHHCCCCEE
Q ss_conf 00254101899999985389836
Q gi|254780178|r 244 HYLMGVGTPDDILKSVSYGVDMF 266 (378)
Q Consensus 244 r~l~G~G~P~~i~~~v~~GvDlF 266 (378)
...+.+|+|.+...+.++|.|-.
T Consensus 537 ~V~~N~~~p~da~~a~~~gadGV 559 (875)
T PRK09279 537 KVRANADTPEDAKTAREFGAEGI 559 (875)
T ss_pred EEEECCCCHHHHHHHHHCCCCEE
T ss_conf 67745899899999997699838
No 73
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=51.50 E-value=18 Score=16.54 Aligned_cols=51 Identities=10% Similarity=0.041 Sum_probs=34.0
Q ss_pred CCCCCCCHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 598669813368898999886857850899999999999999999999999985998999999999853
Q gi|254780178|r 301 LDAESHCSALRDYSRAYLHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQENWK 369 (378)
Q Consensus 301 i~~~C~C~~C~~ytraYl~HL~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~~~~~~ 369 (378)
|-..-.|++|++-|-+ .+ |--.-..+-..||+-|.+|.=++-+.+|+...+
T Consensus 37 L~~elRCpvCq~qsi~------~S------------~s~iA~dmR~~Ir~~i~~G~sd~eI~~~l~~rY 87 (126)
T PRK10144 37 IASQLRCPQCQNQNLL------ES------------NAPVAVSMRHQVYSMVAEGKSEVEIIGWMTERY 87 (126)
T ss_pred HHHHCCCCCCCCCCHH------HC------------CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf 9982788778998841------15------------779999999999999986999999999999864
No 74
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=51.25 E-value=13 Score=17.60 Aligned_cols=32 Identities=25% Similarity=0.382 Sum_probs=24.8
Q ss_pred HHEECCCCHHHHHHHHHHHCCCCEEEECCEEEC
Q ss_conf 310025410189999998538983662000002
Q gi|254780178|r 242 RPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRA 274 (378)
Q Consensus 242 kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~ 274 (378)
.--++.|+.+|.+|..+.++|.|+.- .+|...
T Consensus 106 ~i~~iPGv~TpsEi~~A~~~G~~~vK-lFPA~~ 137 (210)
T PRK07455 106 DIPIIPGALTPTEIVTAWQAGASCVK-VFPVQA 137 (210)
T ss_pred CCCEECCCCCHHHHHHHHHCCCCEEE-ECCCHH
T ss_conf 99765886999999999986998477-505132
No 75
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=51.10 E-value=13 Score=17.50 Aligned_cols=42 Identities=24% Similarity=0.459 Sum_probs=29.5
Q ss_pred HHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCEEEECCEEECC
Q ss_conf 89998985077033100254101899999985389836620000023
Q gi|254780178|r 229 HILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAG 275 (378)
Q Consensus 229 ~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~A 275 (378)
++++.+... .--++.|+.+|.++..+.++|.|++- .+|....
T Consensus 88 ~v~~~a~~~----~~~~iPGv~TpsEi~~A~~~G~~~vK-~FPa~~~ 129 (190)
T cd00452 88 EVVKAANRA----GIPLLPGVATPTEIMQALELGADIVK-LFPAEAV 129 (190)
T ss_pred HHHHHHHHC----CCCEECCCCCHHHHHHHHHCCCCEEE-ECCCCCC
T ss_conf 999999982----99665787999999999987999899-8955114
No 76
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit; InterPro: IPR006274 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents the small subunit of the glutamine-dependent form (6.3.5.5 from EC) of carbamoyl phosphate synthase, CPSase II. The small subunit catalyses the hydrolysis of glutamine to ammonia, which in turn used by the large chain to synthesize carbamoyl phosphate. The C-terminal domain of the small subunit of CPSase has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (6.3.4.16 from EC). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species. ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=51.08 E-value=15 Score=17.03 Aligned_cols=64 Identities=19% Similarity=0.457 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCCC-HHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCEEEECC
Q ss_conf 8876422234676641356751-67899899989850770331002541018999999853898366200
Q gi|254780178|r 202 AERLKELDLKGYAIGGLAVGEP-QEVMLHILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDMFDCVM 270 (378)
Q Consensus 202 a~~l~~~~~~G~aIgGl~~ge~-~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ 270 (378)
++++.+.+-||.-|+. ..|.| +. ....|..+..+|-..+| +||+=-=++|+ |-|+|.++|==-+
T Consensus 230 ~~~i~~~~PDGiflSN-GPGDPH~~-~~~~i~~~~~l~~~~~P--~fGICLGHQll-ALA~Ga~TyKlKF 294 (383)
T TIGR01368 230 AEEIKKYNPDGIFLSN-GPGDPHAA-VEPAIETVRELLEAKIP--IFGICLGHQLL-ALAFGAKTYKLKF 294 (383)
T ss_pred HHHHHHHCCCEEEEEC-CCCCCHHH-HHHHHHHHHHHHHCCCC--CCCCCHHHHHH-HHHCCCCEEECCC
T ss_conf 8999865788899908-79880567-89999999999844897--10026668999-9973887000465
No 77
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=50.97 E-value=19 Score=16.49 Aligned_cols=127 Identities=16% Similarity=0.177 Sum_probs=65.7
Q ss_pred ECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHH---HHHHHHCC---CCCCEEEEECCCCCCHHHHH
Q ss_conf 1299999998732897799601213322115899999998899999---99885135---88860554023444366899
Q gi|254780178|r 126 VSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAE---RSLVAFGN---QPGKALFGIVQGGDNINLRS 199 (378)
Q Consensus 126 ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~---~~~~~~~~---~~~~~lfgiVqGG~~~dLR~ 199 (378)
--|++++++...+.--..+-++ ....+-..+..+-++|-+..+. ......+. ...-.++|. -|...|.-.
T Consensus 126 Clpd~VldlL~e~~~r~~vWvE--LGLQT~h~~Tlk~iNRgHd~~~y~dav~r~rkrgIkvc~HiI~GL--PgE~~~~ml 201 (312)
T COG1242 126 CLPDDVLDLLAEYNKRYEVWVE--LGLQTAHDKTLKRINRGHDFACYVDAVKRLRKRGIKVCTHLINGL--PGETRDEML 201 (312)
T ss_pred CCCHHHHHHHHHHHHHEEEEEE--ECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEEEECC--CCCCHHHHH
T ss_conf 8818999999998644578877--453055589999876245449999999999974974988884079--888889999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCC----------------CHHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHH
Q ss_conf 99887642223467664135675----------------1678998999898507703310025410189999
Q gi|254780178|r 200 FSAERLKELDLKGYAIGGLAVGE----------------PQEVMLHILSNVLPILPVERPHYLMGVGTPDDIL 256 (378)
Q Consensus 200 ~Sa~~l~~~~~~G~aIgGl~~ge----------------~~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~ 256 (378)
+-|+.++..+++|.-|-.|.+-+ +.++..+.+-..++.||++--.|=+..-.|.+.+
T Consensus 202 eTak~v~~~~v~GIKlH~LhvvkgT~m~k~Y~~G~l~~ls~eeYv~~~~d~le~lpp~vviHRitgd~pr~~l 274 (312)
T COG1242 202 ETAKIVAELGVDGIKLHPLHVVKGTPMEKMYEKGRLKFLSLEEYVELVCDQLEHLPPEVVIHRITGDAPRDTL 274 (312)
T ss_pred HHHHHHHHCCCCEEEEEEEEEECCCHHHHHHHCCCCEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCE
T ss_conf 9999998668753888878886387599999718865545999999999999748932699970378985641
No 78
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=49.90 E-value=13 Score=17.46 Aligned_cols=30 Identities=20% Similarity=0.387 Sum_probs=24.8
Q ss_pred HEECCCCHHHHHHHHHHHCCCCEEEECCEEE
Q ss_conf 1002541018999999853898366200000
Q gi|254780178|r 243 PHYLMGVGTPDDILKSVSYGVDMFDCVMPTR 273 (378)
Q Consensus 243 Pr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr 273 (378)
--|+.|+.+|.++..+.++|.|+.- .+|..
T Consensus 114 ~~~iPGv~TptEi~~A~~~G~~~vK-~FPa~ 143 (223)
T PRK07114 114 IPYSPGCGSVSEIGFAEELGCEIVK-IFPGD 143 (223)
T ss_pred CCCCCCCCCHHHHHHHHHCCCCEEE-ECCCC
T ss_conf 9753731999999999987999798-89732
No 79
>pfam01081 Aldolase KDPG and KHG aldolase. This family includes the following members: 4-hydroxy-2-oxoglutarate aldolase (KHG-aldolase) Phospho-2-dehydro-3-deoxygluconate aldolase (KDPG-aldolase)
Probab=49.50 E-value=14 Score=17.23 Aligned_cols=31 Identities=26% Similarity=0.592 Sum_probs=24.7
Q ss_pred HHEECCCCHHHHHHHHHHHCCCCEEEECCEEE
Q ss_conf 31002541018999999853898366200000
Q gi|254780178|r 242 RPHYLMGVGTPDDILKSVSYGVDMFDCVMPTR 273 (378)
Q Consensus 242 kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr 273 (378)
.--++.|+.+|.++..+.++|.|+.- .+|..
T Consensus 101 ~i~~iPGv~TpsEi~~A~~~G~~~vK-lFPA~ 131 (196)
T pfam01081 101 KIPLIPGVSTPSEIMLGLDLGLTRFK-FFPAE 131 (196)
T ss_pred CCCEECCCCCHHHHHHHHHCCCCEEE-ECCCH
T ss_conf 99663785999999999987999899-78731
No 80
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=49.36 E-value=15 Score=17.20 Aligned_cols=31 Identities=23% Similarity=0.551 Sum_probs=24.8
Q ss_pred HHEECCCCHHHHHHHHHHHCCCCEEEECCEEE
Q ss_conf 31002541018999999853898366200000
Q gi|254780178|r 242 RPHYLMGVGTPDDILKSVSYGVDMFDCVMPTR 273 (378)
Q Consensus 242 kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr 273 (378)
.--++.|+.+|.++..+.++|.|++- .+|..
T Consensus 108 ~i~~iPGv~TpsEi~~A~~~G~~~vK-~FPA~ 138 (212)
T PRK05718 108 PIPLIPGVNTPSELMLAMELGLRTFK-FFPAE 138 (212)
T ss_pred CCCEECCCCCHHHHHHHHHCCCCEEE-ECCCC
T ss_conf 99765786999999999987999899-78761
No 81
>PTZ00333 triosephosphate isomerase; Provisional
Probab=49.33 E-value=20 Score=16.32 Aligned_cols=75 Identities=16% Similarity=0.328 Sum_probs=38.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHH-HHHHHHHHHHCCCCCCCHHHHH
Q ss_conf 332211589999999889999999885135888605540234443668999988764-2223467664135675167899
Q gi|254780178|r 150 LALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLK-ELDLKGYAIGGLAVGEPQEVML 228 (378)
Q Consensus 150 ~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~-~~~~~G~aIgGl~~ge~~~~~~ 228 (378)
|...++.+.+++...--..++.+.........-..|+| |.+.++ -++++. ..++||..|||-++. +++.
T Consensus 175 TG~~as~~~i~e~~~~Ir~~l~~~~~~~~~~~i~ILYG---GSVn~~----Na~~i~~~~~vDG~LVGgASL~---~~F~ 244 (252)
T PTZ00333 175 TGKVATPEQAQEVHAFIRKWLSEKVGADVAKKVRIIYG---GSVNEK----NCHELIKQPDIDGFLVGGASLK---PEFV 244 (252)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCHHHHCCCCEEEE---CCCCHH----HHHHHHCCCCCCEEEECHHHCC---HHHH
T ss_conf 89999999999999999999998718545067748872---777999----9999966889997896005379---7899
Q ss_pred HHHHHH
Q ss_conf 899989
Q gi|254780178|r 229 HILSNV 234 (378)
Q Consensus 229 ~ii~~~ 234 (378)
+|+...
T Consensus 245 ~Ii~~a 250 (252)
T PTZ00333 245 DIIKAA 250 (252)
T ss_pred HHHHHH
T ss_conf 999985
No 82
>KOG2343 consensus
Probab=49.29 E-value=20 Score=16.32 Aligned_cols=75 Identities=16% Similarity=0.134 Sum_probs=41.6
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHC-----CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 320024562100210123223688559866981336-----889899988685785089999999999999999999999
Q gi|254780178|r 276 RHGLAFTRFGKINLRNARHIDDMRPLDAESHCSALR-----DYSRAYLHHLLRVNESLAGMILSWANLAYYQDLMKEIRS 350 (378)
Q Consensus 276 r~G~~~t~~g~i~l~~~~~~~d~~pi~~~C~C~~C~-----~ytraYl~HL~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~ 350 (378)
|.|+..++.+..+..+.+|..-|+|+..-|.-+-|. ++++.-.+.+....| =...-++-++++|+
T Consensus 561 ~~G~I~~Pk~~f~nE~~ry~~rF~PF~sl~~P~~~~Ye~Fk~~~~~~q~~~~~iee----------l~~~aqk~f~~ak~ 630 (689)
T KOG2343 561 RDGIILKPKGKFDNEELRYNRRFEPFNSLGVPPPVSYEQFKGHSDIRQRDLGSIEE----------LFATAQKSFDEAKN 630 (689)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHH----------HHHHHHHHHHHHHH
T ss_conf 47712078887546889999864237535899984299984346776415653589----------99999999999999
Q ss_pred HHHCCCHHHH
Q ss_conf 9985998999
Q gi|254780178|r 351 AIAEDCFVDF 360 (378)
Q Consensus 351 aI~~g~f~~~ 360 (378)
+++++--...
T Consensus 631 ~L~ni~n~~~ 640 (689)
T KOG2343 631 GLENIDNKGE 640 (689)
T ss_pred HHHCCCCCCH
T ss_conf 9854888508
No 83
>PRK08904 consensus
Probab=48.97 E-value=15 Score=17.14 Aligned_cols=31 Identities=26% Similarity=0.523 Sum_probs=24.8
Q ss_pred HHEECCCCHHHHHHHHHHHCCCCEEEECCEEE
Q ss_conf 31002541018999999853898366200000
Q gi|254780178|r 242 RPHYLMGVGTPDDILKSVSYGVDMFDCVMPTR 273 (378)
Q Consensus 242 kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr 273 (378)
.--|+.|+.+|.++..+.++|.|+.- .+|..
T Consensus 103 ~i~~iPGv~TpsEi~~A~~~G~~~vK-~FPA~ 133 (207)
T PRK08904 103 GIPLIPGVATPGEIQLALEHGIDTLK-LFPAE 133 (207)
T ss_pred CCCEECCCCCHHHHHHHHHCCCCEEE-ECCCH
T ss_conf 99765786999999999987999899-77622
No 84
>KOG1643 consensus
Probab=48.93 E-value=17 Score=16.77 Aligned_cols=99 Identities=17% Similarity=0.296 Sum_probs=56.8
Q ss_pred EECHHHHHHHHHHCC--CCEEEEE----HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE-EECCCCCCHHH
Q ss_conf 712999999987328--9779960----1213322115899999998899999998851358886055-40234443668
Q gi|254780178|r 125 RVSPEESVHIQNLLG--SDIQMQL----DECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALF-GIVQGGDNINL 197 (378)
Q Consensus 125 ~ltpe~~i~~q~~lg--~DI~~~L----D~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lf-giVqGG~~~dL 197 (378)
.+--++--.+.++++ +.|.++. ..-|...++.+.+++-...-.+|+..-+....-.....++ |.|-||-..
T Consensus 140 dVv~~Ql~aiad~v~~w~niviAYEPVWAIGTGk~atp~QaqEVh~~iR~wl~~~vs~~Va~~~RIiYGGSV~g~N~~-- 217 (247)
T KOG1643 140 DVVFRQLKAIADKVKDWSNIVIAYEPVWAIGTGKTATPEQAQEVHAEIRKWLKSNVSDAVASSTRIIYGGSVNGGNCK-- 217 (247)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECEEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCEEEEECCCCCCCCHH--
T ss_conf 899999999998547864328985033665178779878999999999999863111666533378964655663478--
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 999988764222346766413567516789989998
Q gi|254780178|r 198 RSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSN 233 (378)
Q Consensus 198 R~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~ 233 (378)
+...+.|+|||.+||-++- -++.+|++.
T Consensus 218 -----el~~~~diDGFLVGGaSLK---peF~~Iin~ 245 (247)
T KOG1643 218 -----ELAKKPDIDGFLVGGASLK---PEFVDIINA 245 (247)
T ss_pred -----HHCCCCCCCCEEECCCCCC---HHHHHHHHC
T ss_conf -----7636545663477575468---179876532
No 85
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=48.57 E-value=15 Score=17.06 Aligned_cols=31 Identities=19% Similarity=0.353 Sum_probs=24.4
Q ss_pred HHEECCCCHHHHHHHHHHHCCCCEEEECCEEE
Q ss_conf 31002541018999999853898366200000
Q gi|254780178|r 242 RPHYLMGVGTPDDILKSVSYGVDMFDCVMPTR 273 (378)
Q Consensus 242 kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr 273 (378)
.--++.|+.+|.+|..+.++|.|+.- .+|..
T Consensus 108 ~i~~iPGv~TpsEi~~A~~~G~~~vK-lFPA~ 138 (212)
T PRK06015 108 DVPLLPGAITPSEVMALREEGYTVLK-FFPAE 138 (212)
T ss_pred CCCEECCCCCHHHHHHHHHCCCCEEE-ECCCC
T ss_conf 99773786999999999987999899-78430
No 86
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=48.07 E-value=21 Score=16.19 Aligned_cols=41 Identities=15% Similarity=0.122 Sum_probs=24.7
Q ss_pred HHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEEE
Q ss_conf 99899989850770331002-541018999999853898366
Q gi|254780178|r 227 MLHILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMFD 267 (378)
Q Consensus 227 ~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlFD 267 (378)
-.++|..+...+..+.|.-= =|+.+++|+.+.+..|.++.-
T Consensus 238 al~~v~~i~~~~~~~i~Iig~GGI~s~~Da~e~i~aGAs~Vq 279 (299)
T cd02940 238 ALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQ 279 (299)
T ss_pred HHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCHHH
T ss_conf 999999999964899778998995999999999984998999
No 87
>PRK08782 consensus
Probab=47.65 E-value=16 Score=16.92 Aligned_cols=51 Identities=24% Similarity=0.332 Sum_probs=33.0
Q ss_pred HHEECCCCHHHHHHHHHHHCCCCEEEECCEEECCC------------CCCCCCCCCCHHHHHHH
Q ss_conf 31002541018999999853898366200000233------------20024562100210123
Q gi|254780178|r 242 RPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGR------------HGLAFTRFGKINLRNAR 293 (378)
Q Consensus 242 kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar------------~G~~~t~~g~i~l~~~~ 293 (378)
.--|+.|+.+|-+|..+.++|.|+.- .+|....- .+.-|-+.|=++..|..
T Consensus 110 ~i~~iPGv~TpSEi~~A~~~G~~~vK-lFPA~~~Gg~~~lkal~~pfp~~~f~pTGGV~~~N~~ 172 (219)
T PRK08782 110 PIPAVPGAATPTELLTLMGLGFRVCK-LFPATAVGGLQMLKGLAGPLSELKLCPTGGISETNAA 172 (219)
T ss_pred CCCEECCCCCHHHHHHHHHCCCCEEE-ECCCHHCCCHHHHHHHHCCCCCCEEEECCCCCHHHHH
T ss_conf 99764785999999999987999899-7773220849999998476999818767998987899
No 88
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=47.46 E-value=21 Score=16.13 Aligned_cols=38 Identities=11% Similarity=-0.024 Sum_probs=19.2
Q ss_pred HHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHH
Q ss_conf 99999987328977996012133221158999999988
Q gi|254780178|r 129 EESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELS 166 (378)
Q Consensus 129 e~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT 166 (378)
-+|+..|-.-|+|+++.||-+...-++....+=+..-+
T Consensus 180 ~~yl~~Qi~aGAd~iqIFDSwag~L~~~~f~~f~~p~~ 217 (335)
T cd00717 180 IEYLKAQIEAGAQAVQIFDSWAGALSPEDFEEFVLPYL 217 (335)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 99999999819987885075202068999999899999
No 89
>pfam03918 CcmH Cytochrome C biogenesis protein. Members of this family include NrfF, CcmH, CycL, Ccl2.
Probab=47.19 E-value=21 Score=16.11 Aligned_cols=26 Identities=19% Similarity=0.113 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99999999998599899999999985
Q gi|254780178|r 343 DLMKEIRSAIAEDCFVDFAMQTQENW 368 (378)
Q Consensus 343 ~~~~~iR~aI~~g~f~~~~~~~~~~~ 368 (378)
.+-..||+-|.+|.=++-+.+|+...
T Consensus 58 dmR~~i~~~i~~G~sd~eI~~~~~~r 83 (145)
T pfam03918 58 DLRLEVREMLVEGKSDEEIIDYMVAR 83 (145)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 99999999998599999999999986
No 90
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=46.70 E-value=22 Score=16.06 Aligned_cols=124 Identities=13% Similarity=0.068 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHCCCCEEEEEHHHCCCCCCH---HH---HHHHHHHHHHHHHHHHHHHCCCCCCEEEE----ECCCCCCHH
Q ss_conf 299999998732897799601213322115---89---99999988999999988513588860554----023444366
Q gi|254780178|r 127 SPEESVHIQNLLGSDIQMQLDECLALPAED---KE---LKRAMELSLRWAERSLVAFGNQPGKALFG----IVQGGDNIN 196 (378)
Q Consensus 127 tpe~~i~~q~~lg~DI~~~LD~~~~~~~~~---k~---~~~sv~rT~~w~~~~~~~~~~~~~~~lfg----iVqGG~~~d 196 (378)
.....++--+..|.--+..=|...|..++. |+ .+.++++ .+.+.++.. .++-.+.+ ....|...-
T Consensus 94 nv~rtV~~~e~aGvagi~IEDq~~pKrcgh~~gk~lv~~~e~~~K----I~AA~~ar~-~~df~IiARTDA~~~~gldeA 168 (292)
T PRK11320 94 NIARTIKSMIKAGAAAVHIEDQVGQKRCGHRPNKEIVSQEEMVDR----IKAAVDART-DPDFVIMARTDALAVEGLDAA 168 (292)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHH----HHHHHHHCC-CCCEEEEEECCCCCCCCHHHH
T ss_conf 899999999974996898415556655686667533349999999----999998567-998599995363345886999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEE---CCCCHHH-HHHHHHHHCCCCEE
Q ss_conf 8999988764222346766413567516789989998985077033100---2541018-99999985389836
Q gi|254780178|r 197 LRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHY---LMGVGTP-DDILKSVSYGVDMF 266 (378)
Q Consensus 197 LR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~---l~G~G~P-~~i~~~v~~GvDlF 266 (378)
+++ ++...+.+.|+.-+.|+ .+.+++..+... + +.|.. +-|-.+| ...-++.++|+++.
T Consensus 169 i~R--a~aY~eAGAD~if~ea~---~~~ee~~~~~~~----~--~~Pll~n~~e~g~tP~~s~~el~~lG~~~v 231 (292)
T PRK11320 169 IER--AQAYVEAGADMIFPEAI---TELDMYRRFADA----V--KVPILANITEFGATPLFTTEELASAGVAMV 231 (292)
T ss_pred HHH--HHHHHHCCCCEEECCCC---CCHHHHHHHHHH----C--CCCEEEEECCCCCCCCCCHHHHHHCCCCEE
T ss_conf 999--99999779989941789---999999999997----7--999899848999998879999997799899
No 91
>PRK06857 consensus
Probab=45.75 E-value=18 Score=16.60 Aligned_cols=31 Identities=16% Similarity=0.384 Sum_probs=24.2
Q ss_pred HHEECCCCHHHHHHHHHHHCCCCEEEECCEEE
Q ss_conf 31002541018999999853898366200000
Q gi|254780178|r 242 RPHYLMGVGTPDDILKSVSYGVDMFDCVMPTR 273 (378)
Q Consensus 242 kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr 273 (378)
.--|+.|+.+|.+|..+.++|+|+.- .+|..
T Consensus 105 ~i~~iPGv~TpsEi~~A~~~G~~~vK-lFPA~ 135 (209)
T PRK06857 105 NIPIVPGVNNPSLVEQALEMGLTTLK-FFPAE 135 (209)
T ss_pred CCCEECCCCCHHHHHHHHHCCCCEEE-ECCCC
T ss_conf 99654787999999999987999899-78662
No 92
>PRK13131 consensus
Probab=45.40 E-value=23 Score=15.93 Aligned_cols=205 Identities=15% Similarity=0.147 Sum_probs=99.8
Q ss_pred CCCEEECCCCCCCCC-CCHHHH---HHCCCCEE-EEEHHHHHHCCCHHHHHHCCCCHHHCCCCCCEEECCCCCCCCHHHH
Q ss_conf 585741068685688-688999---86099899-9322665738768998652742011015772241145432101221
Q gi|254780178|r 30 TPAFMPVGTAGTVKA-MYFDQV---RDLGADVI-LGNAYHLMLRPGAERIARLGGLHKFIRWFKPILTDSGGFQVMSLSK 104 (378)
Q Consensus 30 TP~flpv~t~g~v~~-lt~~~l---~~~g~~~i-l~Ntyhl~~~pg~~~i~~~gGlh~fl~~~~~ilTDSGgfQv~sl~~ 104 (378)
-++|+|+.+.|-..- .+.+.+ .+.|++++ +.=+|--=.-.|+ +|+++. . +-++ .+. +. ..|+ .+..
T Consensus 10 ~~alI~yitaG~P~~e~s~~~~~~l~~~GadiiEiGiPFSDP~ADGp-vIQ~a~-~-rAL~-~g~-~~--~~~~--~~~~ 80 (257)
T PRK13131 10 KMAFIPFVTLGDPNYELSFEIIKTLIISGVSALELGFAFSDPVADGI-TIQASH-L-RALK-HAS-MA--KNFQ--LLKK 80 (257)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCH-HHHHHH-H-HHHH-CCC-HH--HHHH--HHHH
T ss_conf 94589886186899889999999999779999997899888554559-999999-9-9997-898-89--9999--9999
Q ss_pred CCCCC-CCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 02233-33102101445415871299999998732897799601213322115899999998899999998851358886
Q gi|254780178|r 105 LCSID-EQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGK 183 (378)
Q Consensus 105 ~~~~~-~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~ 183 (378)
.++.. +-.+-+.++++ -......|+.++--...|.|=.+.-|-+. +....|...|.+. . ...-
T Consensus 81 ~r~~~~~~pivlM~Y~N-~i~~yG~e~F~~~~~~~GvdGvIipDLP~-------------eE~~~~~~~~~~~-~-l~~I 144 (257)
T PRK13131 81 IRDYNHHIPIGLLAYAN-LIFSYGVDGFYAQAKECGVDSVLIADMPL-------------IEKELVIKSAQKH-Q-IKQI 144 (257)
T ss_pred HHHCCCCCCEEEECCHH-HHHHHCHHHHHHHHHHCCCCCEECCCCCH-------------HHHHHHHHHHHHC-C-CCEE
T ss_conf 87049998889992768-99985799999999865998565589996-------------7889999999977-9-8479
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-CCCC---HHHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHH
Q ss_conf 055402344436689999887642223467664135-6751---67899899989850770331002-541018999999
Q gi|254780178|r 184 ALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLA-VGEP---QEVMLHILSNVLPILPVERPHYL-MGVGTPDDILKS 258 (378)
Q Consensus 184 ~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~-~ge~---~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~ 258 (378)
.|..| ...+.|.+.+-..++ +| -|.++-.+ .|.. .+...+.+..+.... +.|..+ ||+.+|+++..+
T Consensus 145 ~lvaP----tt~~~Ri~~i~~~s~-GF-iY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t--~~Pv~vGFGIs~~e~v~~~ 216 (257)
T PRK13131 145 FIASP----NASVKDLEQVATHSQ-GY-IYTLARSGVTGASHTLENDASAIIKTLKTFS--PTPALLGFGISKKEHITNA 216 (257)
T ss_pred EEECC----CCCHHHHHHHHHCCC-CE-EEEEECCCCCCCCCCCCHHHHHHHHHHHHCC--CCCEEEECCCCCHHHHHHH
T ss_conf 97289----998899999983589-74-9998457677986434076999999999668--9987998057988999999
Q ss_pred HHCCCCEEE
Q ss_conf 853898366
Q gi|254780178|r 259 VSYGVDMFD 267 (378)
Q Consensus 259 v~~GvDlFD 267 (378)
...|.|-.-
T Consensus 217 ~~~gaDGvI 225 (257)
T PRK13131 217 KGMGADGVI 225 (257)
T ss_pred HHCCCCEEE
T ss_conf 855999999
No 93
>PRK08104 consensus
Probab=45.28 E-value=18 Score=16.55 Aligned_cols=31 Identities=19% Similarity=0.522 Sum_probs=24.7
Q ss_pred HHEECCCCHHHHHHHHHHHCCCCEEEECCEEE
Q ss_conf 31002541018999999853898366200000
Q gi|254780178|r 242 RPHYLMGVGTPDDILKSVSYGVDMFDCVMPTR 273 (378)
Q Consensus 242 kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr 273 (378)
.--++.|+.+|.+|..+.++|.|+.- .+|..
T Consensus 108 ~i~~iPGv~TpsEi~~A~~~G~~~vK-lFPA~ 138 (212)
T PRK08104 108 TIPLIPGISTVSELMLGMDYGLTEFK-FFPAE 138 (212)
T ss_pred CCCEECCCCCHHHHHHHHHCCCCEEE-ECCCC
T ss_conf 99765676999999999987999799-78762
No 94
>KOG4422 consensus
Probab=44.60 E-value=23 Score=15.85 Aligned_cols=74 Identities=22% Similarity=0.370 Sum_probs=53.2
Q ss_pred HHHHHHHHCCCCCCCCCCCC---------CHHHCCCCHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 02101232236885598669---------81336889899-988685785089999999999999999999999998599
Q gi|254780178|r 287 INLRNARHIDDMRPLDAESH---------CSALRDYSRAY-LHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDC 356 (378)
Q Consensus 287 i~l~~~~~~~d~~pi~~~C~---------C~~C~~ytraY-l~HL~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~ 356 (378)
.+|-|+---..|.|+++.|+ |+--++-+-|| +|.|++++..--.+=..+|--++|.+|+..|-+.---+.
T Consensus 337 ~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~ 416 (625)
T KOG4422 337 NDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDV 416 (625)
T ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99987631671567799712999999999998630789999999997377643348178888899999999998888999
Q ss_pred HHHH
Q ss_conf 8999
Q gi|254780178|r 357 FVDF 360 (378)
Q Consensus 357 f~~~ 360 (378)
+-.|
T Consensus 417 ~~~~ 420 (625)
T KOG4422 417 TLKW 420 (625)
T ss_pred HHHH
T ss_conf 9999
No 95
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=43.17 E-value=15 Score=17.06 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=15.3
Q ss_pred ECCCCHHHHHHHHHHHCCCCEEE
Q ss_conf 02541018999999853898366
Q gi|254780178|r 245 YLMGVGTPDDILKSVSYGVDMFD 267 (378)
Q Consensus 245 ~l~G~G~P~~i~~~v~~GvDlFD 267 (378)
|==|+-+|++--..++.|.|+.-
T Consensus 196 vGGGIrs~E~A~~~a~agAD~IV 218 (240)
T COG1646 196 VGGGIRSPEQAREMAEAGADTIV 218 (240)
T ss_pred ECCCCCCHHHHHHHHHCCCCEEE
T ss_conf 85884989999999971799899
No 96
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=42.64 E-value=25 Score=15.65 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=10.0
Q ss_pred CCCCCCEEEECHHHHHHHHHHC---CCCEE
Q ss_conf 1445415871299999998732---89779
Q gi|254780178|r 117 SHIDGSLYRVSPEESVHIQNLL---GSDIQ 143 (378)
Q Consensus 117 s~~dG~~~~ltpe~~i~~q~~l---g~DI~ 143 (378)
|.+||++ .+++++.++-.+.+ |+||+
T Consensus 13 SFsdgg~-~~~~~~a~~~a~~~i~~GAdiI 41 (257)
T cd00739 13 SFSDGGR-FLSLDKAVAHAEKMIAEGADII 41 (257)
T ss_pred CCCCCCC-CCCHHHHHHHHHHHHHCCCCEE
T ss_conf 8989985-8899999999999998799899
No 97
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=41.67 E-value=9.7 Score=18.38 Aligned_cols=19 Identities=5% Similarity=0.020 Sum_probs=13.4
Q ss_pred HHHHHHHHCCCCEEEEEHH
Q ss_conf 9999987328977996012
Q gi|254780178|r 130 ESVHIQNLLGSDIQMQLDE 148 (378)
Q Consensus 130 ~~i~~q~~lg~DI~~~LD~ 148 (378)
..-++.+..+||+++..-|
T Consensus 83 ~~~~vl~~~kPD~VlVhGD 101 (383)
T COG0381 83 GLSKVLEEEKPDLVLVHGD 101 (383)
T ss_pred HHHHHHHHHCCCEEEEECC
T ss_conf 9999998629998999178
No 98
>TIGR01182 eda 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related . They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=40.77 E-value=21 Score=16.07 Aligned_cols=49 Identities=31% Similarity=0.538 Sum_probs=33.6
Q ss_pred EECCCCHHHHHHHHHHHCCCCEEEECCEEECC--------CC----CCCCCCCCCHHHHHHH
Q ss_conf 00254101899999985389836620000023--------32----0024562100210123
Q gi|254780178|r 244 HYLMGVGTPDDILKSVSYGVDMFDCVMPTRAG--------RH----GLAFTRFGKINLRNAR 293 (378)
Q Consensus 244 r~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~A--------r~----G~~~t~~g~i~l~~~~ 293 (378)
=|+.||-+|.+|..|-++|++.|= -+|+-.- =. +.-|.+.|=||+.|..
T Consensus 104 P~iPGV~tpsEi~~Al~~G~~~lK-lFPAe~~GG~~~lkAL~GPf~~v~F~PTGGi~l~N~~ 164 (205)
T TIGR01182 104 PIIPGVATPSEIMLALELGITALK-LFPAEVVGGVKMLKALAGPFPQVRFCPTGGINLDNAR 164 (205)
T ss_pred CEECCCCCHHHHHHHHHCCCCEEE-ECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHH
T ss_conf 121777687899999875774652-1256235308999973165789845147999887899
No 99
>TIGR02855 spore_yabG sporulation peptidase YabG; InterPro: IPR008764 Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of Bacillus subtilis ..
Probab=40.66 E-value=23 Score=15.83 Aligned_cols=89 Identities=12% Similarity=0.084 Sum_probs=51.4
Q ss_pred CCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCC----HHHHHHHHHHHHHHHHHHHHHHCCC---
Q ss_conf 333310210144541587129999999873289779960121332211----5899999998899999998851358---
Q gi|254780178|r 108 IDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAE----DKELKRAMELSLRWAERSLVAFGNQ--- 180 (378)
Q Consensus 108 ~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~----~k~~~~sv~rT~~w~~~~~~~~~~~--- 180 (378)
+.=-||.-.. .=-|+++.++.+..+|||.+. |..++- .+...=..-|-.++.-+|.+...+.
T Consensus 138 v~V~G~~~~E-------~emPe~v~~L~~~~~PDIlVi----TGHDa~~K~~~~~~DL~aYRhSkyFv~~V~~aR~~~P~ 206 (292)
T TIGR02855 138 VPVVGIHCKE-------KEMPEKVLDLIEEVRPDILVI----TGHDAYSKNKGNYGDLNAYRHSKYFVETVREARKYVPS 206 (292)
T ss_pred CCEEEEEEEE-------CCCCHHHHHHHHHHCCCEEEE----ECCCCEEECCCCHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 7279999841-------218088999997309978999----46663021678711364236656899999998631787
Q ss_pred CCC-EEE-EECCCCCCHHHHHHHHHHHHHH
Q ss_conf 886-055-4023444366899998876422
Q gi|254780178|r 181 PGK-ALF-GIVQGGDNINLRSFSAERLKEL 208 (378)
Q Consensus 181 ~~~-~lf-giVqGG~~~dLR~~Sa~~l~~~ 208 (378)
-+| .+| |..| ..|+-|-+.=|...+.-
T Consensus 207 lD~LVIFAGACQ-ShfE~li~AGANFASSP 235 (292)
T TIGR02855 207 LDQLVIFAGACQ-SHFESLIRAGANFASSP 235 (292)
T ss_pred CCCHHHHHCCCH-HHHHHHHHHCCCCCCCC
T ss_conf 532343321214-45799997456545771
No 100
>pfam06838 Alum_res Aluminium resistance protein. This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria.
Probab=39.61 E-value=25 Score=15.68 Aligned_cols=117 Identities=17% Similarity=0.161 Sum_probs=51.9
Q ss_pred CCCCCCEEECCCCCCCCHHHHCCCCCCCCEEE-ECCCCCCEEEECH---HHHHHHHHHCCCCEEEEEHHHCCCCCCHHHH
Q ss_conf 01577224114543210122102233331021-0144541587129---9999998732897799601213322115899
Q gi|254780178|r 84 IRWFKPILTDSGGFQVMSLSKLCSIDEQGVRF-RSHIDGSLYRVSP---EESVHIQNLLGSDIQMQLDECLALPAEDKEL 159 (378)
Q Consensus 84 l~~~~~ilTDSGgfQv~sl~~~~~~~~~Gv~f-~s~~dG~~~~ltp---e~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~ 159 (378)
++++..=|++.|....-.+...-+.+..-|.. +|.-...+.-+|. ++.+++.+.+.||+++..|-|=.--...+
T Consensus 130 v~Y~~v~L~~~g~~D~~~i~~ai~~~tk~v~IQRS~GYs~R~slsi~~I~~~i~~vk~~~pd~ivfVDNCYGEFvE~~-- 207 (405)
T pfam06838 130 IGYREVPLLENGKVDWQAVKTAITPNTKLIGIQRSKGYAWRPSLTIAEIKEMIKFVKEINPNVIVFVDNCYGEFVETK-- 207 (405)
T ss_pred CCCEEECCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC--
T ss_conf 660364357789849999997617564599996256866688879999999999999768993999978860202675--
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCC----HHHHHHHHHHHHHHH
Q ss_conf 99999889999999885135888605540234443----668999988764222
Q gi|254780178|r 160 KRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDN----INLRSFSAERLKELD 209 (378)
Q Consensus 160 ~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~----~dLR~~Sa~~l~~~~ 209 (378)
|-|.-=++=..-..-++++ -|+...|.| .||.++++-.+..-+
T Consensus 208 ----EP~~vGADliaGSLIKNpG---GgiaptGGYIaGk~dlVe~aa~RLTaPG 254 (405)
T pfam06838 208 ----EPTHVGADLIAGSLIKNPG---GGIAKTGGYIAGKEELVEQASYRLTAPG 254 (405)
T ss_pred ----CCCCCCHHHEECCCEECCC---CCCCCCCCEEECHHHHHHHHHHHHCCCC
T ss_conf ----8530163440120124799---7736757778536999999875206883
No 101
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=39.34 E-value=28 Score=15.32 Aligned_cols=75 Identities=17% Similarity=0.244 Sum_probs=38.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-HHHHHHHHHCCCCCCCHHHHH
Q ss_conf 3322115899999998899999998851358886055402344436689999887642-223467664135675167899
Q gi|254780178|r 150 LALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKE-LDLKGYAIGGLAVGEPQEVML 228 (378)
Q Consensus 150 ~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~-~~~~G~aIgGl~~ge~~~~~~ 228 (378)
|...++.+.+++....-..|+.+.... ....-..|+| |.+.++ -++++.. .++||+.|||-++ +.+.+.
T Consensus 174 TG~~as~~~i~~~~~~Ir~~l~~~~~~-~~~~i~IlYG---GSVn~~----N~~~i~~~~~vDG~LVGgASL--~~~~F~ 243 (251)
T PRK00042 174 TGKTATPEQAQEVHAFIRKVLAELYAE-VAEKVRILYG---GSVKPD----NAAELFAQPDIDGALVGGASL--KAEDFL 243 (251)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCCCEEEE---CCCCHH----HHHHHHCCCCCCEEEECHHHC--CHHHHH
T ss_conf 999999999999999999999986052-3057538871---778998----999996688999798515867--989999
Q ss_pred HHHHHH
Q ss_conf 899989
Q gi|254780178|r 229 HILSNV 234 (378)
Q Consensus 229 ~ii~~~ 234 (378)
+|+..+
T Consensus 244 ~Ii~aa 249 (251)
T PRK00042 244 AIVKAA 249 (251)
T ss_pred HHHHHH
T ss_conf 999996
No 102
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=38.84 E-value=24 Score=15.72 Aligned_cols=30 Identities=23% Similarity=0.501 Sum_probs=23.3
Q ss_pred HHEECCCCHHHHHHHHHHHCCCCEEEECCEE
Q ss_conf 3100254101899999985389836620000
Q gi|254780178|r 242 RPHYLMGVGTPDDILKSVSYGVDMFDCVMPT 272 (378)
Q Consensus 242 kPr~l~G~G~P~~i~~~v~~GvDlFD~~~pt 272 (378)
.--++.|+.+|-++..+.++|.|+.- .+|.
T Consensus 104 ~i~~iPG~~TPsEi~~A~~~Ga~~vK-lFPA 133 (206)
T PRK09140 104 GMTVMPGVATPTEAFAALRAGADALK-LFPA 133 (206)
T ss_pred CCCCCCCCCCHHHHHHHHHCCCCEEE-ECCH
T ss_conf 99652785999999999985987156-5751
No 103
>PRK00208 thiG thiazole synthase; Reviewed
Probab=38.82 E-value=28 Score=15.26 Aligned_cols=185 Identities=21% Similarity=0.285 Sum_probs=88.2
Q ss_pred EEECCEEEECCCEEECCCCCCCC-CCCHHHHHHCCCCEEEEEHHHHHHCCCHHHHHHCCCCHHHCCCCCCEE--ECCCCC
Q ss_conf 98788754058574106868568-868899986099899932266573876899865274201101577224--114543
Q gi|254780178|r 21 IITPRGVIKTPAFMPVGTAGTVK-AMYFDQVRDLGADVILGNAYHLMLRPGAERIARLGGLHKFIRWFKPIL--TDSGGF 97 (378)
Q Consensus 21 L~t~~g~i~TP~flpv~t~g~v~-~lt~~~l~~~g~~~il~Ntyhl~~~pg~~~i~~~gGlh~fl~~~~~il--TDSGgf 97 (378)
|..+..++..- +.++|..-.. .+..+-++..|++++-.. ..|-.... .....+-.+++|.+..+ ..+|.
T Consensus 2 l~I~~~~f~SR--LilGTgky~s~~~~~~ai~aSg~eivTVA----lRR~~~~~-~~~~~~l~~i~~~~~~lLPNTAGc- 73 (256)
T PRK00208 2 LTIAGKTFSSR--LLLGTGKYPSPEVMQEAIEASGAEIVTVA----LRRVNLGD-PGGDNLLDLLDPLGVTLLPNTAGC- 73 (256)
T ss_pred CEECCEEEECC--EEEECCCCCCHHHHHHHHHHHCCCEEEEE----EEEECCCC-CCCHHHHHHHCCCCCEECCCCCCC-
T ss_conf 18999997743--47864899999999999999689779999----86424778-985058887431585676664032-
Q ss_pred CCCHHHHCCCCCCCCEEEECCCCCCEEEECHHHHHHHH----HHCCCCEE---EEEHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 21012210223333102101445415871299999998----73289779---960121332211589999999889999
Q gi|254780178|r 98 QVMSLSKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQ----NLLGSDIQ---MQLDECLALPAEDKELKRAMELSLRWA 170 (378)
Q Consensus 98 Qv~sl~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q----~~lg~DI~---~~LD~~~~~~~~~k~~~~sv~rT~~w~ 170 (378)
.|.++.++.- +.++.|++ +.-|+.+-.+++.+ |.+-+
T Consensus 74 ----------------------------~ta~EAVr~A~laRE~~~tnwIKLEVi~D~~~LlPD~~e--------tl~Aa 117 (256)
T PRK00208 74 ----------------------------RTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIE--------TLKAA 117 (256)
T ss_pred ----------------------------CCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHH--------HHHHH
T ss_conf ----------------------------679999999999999848986999981797677988689--------99999
Q ss_pred HHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH-----HHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEE
Q ss_conf 99988513588860554023444366899998876422234-----6766413567516789989998985077033100
Q gi|254780178|r 171 ERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKELDLK-----GYAIGGLAVGEPQEVMLHILSNVLPILPVERPHY 245 (378)
Q Consensus 171 ~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~-----G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~ 245 (378)
+...+ ++=..++-+ ..|+.. ++.+.+.+.. |=.||. ..|-......+++ .+.. +-|..
T Consensus 118 e~Lv~-----eGF~VlpY~----~~D~v~--akrLe~~Gc~avMPlgsPIGS-g~Gl~n~~~l~~i---~e~~--~vPvI 180 (256)
T PRK00208 118 EILVK-----EGFVVLPYC----TDDPVL--AKRLEEAGCAAVMPLGAPIGS-GLGLLNPYNLRII---IEQA--DVPVI 180 (256)
T ss_pred HHHHH-----CCCEEEEEC----CCCHHH--HHHHHHCCCEEEEECCCCCCC-CCCCCCHHHHHHH---HHHC--CCCEE
T ss_conf 99998-----899897867----889899--999997495345204564347-9887999999999---9867--99889
Q ss_pred C-CCCHHHHHHHHHHHCCCCEE
Q ss_conf 2-54101899999985389836
Q gi|254780178|r 246 L-MGVGTPDDILKSVSYGVDMF 266 (378)
Q Consensus 246 l-~G~G~P~~i~~~v~~GvDlF 266 (378)
+ -|+|.|-+-..+.++|+|-.
T Consensus 181 VDAGiG~pS~Aa~AMElG~DaV 202 (256)
T PRK00208 181 VDAGIGTPSDAAQAMELGADAV 202 (256)
T ss_pred EECCCCCHHHHHHHHHCCCCEE
T ss_conf 8578897667899986255432
No 104
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=38.74 E-value=22 Score=16.05 Aligned_cols=60 Identities=28% Similarity=0.388 Sum_probs=45.6
Q ss_pred ECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHCCCHHHHEECCCCH
Q ss_conf 0234443668999988764222346766413567-51678998999898507703310025410
Q gi|254780178|r 188 IVQGGDNINLRSFSAERLKELDLKGYAIGGLAVG-EPQEVMLHILSNVLPILPVERPHYLMGVG 250 (378)
Q Consensus 188 iVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~g-e~~~~~~~ii~~~~~~LP~~kPr~l~G~G 250 (378)
+|.| .-.|||..+.+... ++.+++|+|+++. -+.....++++.+...||...|.+.+.-|
T Consensus 98 ii~g-da~~l~~~l~e~~g--q~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 98 IING-DAFDLRTTLGEHKG--QFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred CCCC-CHHHHHHHHHHCCC--CEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEC
T ss_conf 3054-05657877865279--7401688656002486778999999999856899727999846
No 105
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=38.31 E-value=29 Score=15.21 Aligned_cols=116 Identities=22% Similarity=0.330 Sum_probs=57.4
Q ss_pred ECHHHHHHHH----HHC------CCCEE---EEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 1299999998----732------89779---9601213322115899999998899999998851358886055402344
Q gi|254780178|r 126 VSPEESVHIQ----NLL------GSDIQ---MQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGG 192 (378)
Q Consensus 126 ltpe~~i~~q----~~l------g~DI~---~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG 192 (378)
.|.|+.++.- +.+ +.|++ +.-|+-+-++++.+ |.+-++...+ ++=..++-+
T Consensus 81 ~taeEAVr~A~lAREl~~~~g~~~tnwIKLEVi~D~~tLlPD~~e--------tl~Aae~Lv~-----eGF~VlpY~--- 144 (267)
T CHL00162 81 QTAEEAIRVAFLGRELAKQLGQEDNNFVKLEVIPDPKYLLPDPIG--------TLKAAEFLVR-----KGFTVLPYI--- 144 (267)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHH--------HHHHHHHHHH-----CCCEEEEEC---
T ss_conf 879999999999999853015678977999982798777988789--------9999999997-----899998954---
Q ss_pred CCHHHHHHHHHHHHHHHH-----HHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEE
Q ss_conf 436689999887642223-----467664135675167899899989850770331002-54101899999985389836
Q gi|254780178|r 193 DNINLRSFSAERLKELDL-----KGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMF 266 (378)
Q Consensus 193 ~~~dLR~~Sa~~l~~~~~-----~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlF 266 (378)
..|+-. ++.+.+.+. -|=.||. ..|-......+++-. . .+-|..+ -|+|.|-+-..+.++|+|-.
T Consensus 145 -~dD~v~--akrLe~~Gc~avMPlgsPIGS-g~Gl~n~~~l~~i~e---~--~~vPvIVDAGiG~pSdAa~aMElG~DaV 215 (267)
T CHL00162 145 -NADPVL--AKQLEDIGCATVMPLGSPIGS-GQGLQNLLNLQIIIE---N--AKIPVIIDAGIGTPSEASQAMELGASGV 215 (267)
T ss_pred -CCCHHH--HHHHHHCCCEEEEECCCCCCC-CCCCCCHHHHHHHHH---C--CCCCEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf -899899--999986598688634551236-887589999999996---4--8998899689896788899997467778
No 106
>pfam02896 PEP-utilizers_C PEP-utilising enzyme, TIM barrel domain.
Probab=37.78 E-value=20 Score=16.34 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=27.5
Q ss_pred CHHHHEECCC--CHHHHHHHHHHHCCCCEEEECCEEEC
Q ss_conf 7033100254--10189999998538983662000002
Q gi|254780178|r 239 PVERPHYLMG--VGTPDDILKSVSYGVDMFDCVMPTRA 274 (378)
Q Consensus 239 P~~kPr~l~G--~G~P~~i~~~v~~GvDlFD~~~ptr~ 274 (378)
-.++|..+.| +|+|..+..++.+|+|-| |+.|...
T Consensus 244 ~~g~~vsiCGE~a~dp~~~~~L~~lGi~~l-Sv~p~~i 280 (292)
T pfam02896 244 RKGKWVGICGEMAGDPSAVPLLLGLGLDEF-SMSPTSV 280 (292)
T ss_pred HCCCEEEEECCCCCCHHHHHHHHHCCCCEE-EECHHHH
T ss_conf 879999980887679899999998799979-9887779
No 107
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=35.62 E-value=24 Score=15.76 Aligned_cols=48 Identities=17% Similarity=0.172 Sum_probs=30.3
Q ss_pred HHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEEEECCEEECC
Q ss_conf 9899989850770331002-54101899999985389836620000023
Q gi|254780178|r 228 LHILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMFDCVMPTRAG 275 (378)
Q Consensus 228 ~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlFD~~~ptr~A 275 (378)
.+.+..+...++...|..+ -|+-+..|++.|+++|.|.+=-.-|..++
T Consensus 260 ~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L~~ 308 (360)
T COG1304 260 ADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGADAVGIGRPFLYG 308 (360)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9999999997188717996388787789999999377654525999999
No 108
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase; InterPro: IPR006323 These sequences represent an enzyme that catalyzes the cleavage of the carbon phosphorous bond of a phosphonate. The mechanism depends on the substrate having a carbonyl one carbon away from the cleavage position. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases, and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base . The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilised by microorganisms as a chemical warfare agent..
Probab=34.79 E-value=33 Score=14.85 Aligned_cols=119 Identities=27% Similarity=0.343 Sum_probs=68.2
Q ss_pred CCEEEEEHHHC-CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC----EE---EEECCC---CCCHHHHHHHHHHHHHH
Q ss_conf 97799601213-322115899999998899999998851358886----05---540234---44366899998876422
Q gi|254780178|r 140 SDIQMQLDECL-ALPAEDKELKRAMELSLRWAERSLVAFGNQPGK----AL---FGIVQG---GDNINLRSFSAERLKEL 208 (378)
Q Consensus 140 ~DI~~~LD~~~-~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~----~l---fgiVqG---G~~~dLR~~Sa~~l~~~ 208 (378)
-|+.+.|.+-- |-.-.|-..-+++-.-=+=|+|-.+.+.+.+.. ++ |-++|= ..|--+--.+.+-++++
T Consensus 30 fgv~isleEAR~PMGlgK~dHiral~~~P~iA~rw~~vFgrlp~~~Di~aiYe~F~pl~ia~~a~haapIp~~levia~l 109 (199)
T TIGR01422 30 FGVEISLEEARKPMGLGKWDHIRALTELPRIAERWRRVFGRLPTEADIQAIYEEFMPLQIAKVAEHAAPIPAVLEVIAEL 109 (199)
T ss_pred CCEEEEHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 87077466516887763689999986302899999997089997745899998616899998655405553689999999
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHH------------HCCC-HHHHEECCCCHHHH-HHHHHHHCCCCEE
Q ss_conf 234676641356751678998999898------------5077-03310025410189-9999985389836
Q gi|254780178|r 209 DLKGYAIGGLAVGEPQEVMLHILSNVL------------PILP-VERPHYLMGVGTPD-DILKSVSYGVDMF 266 (378)
Q Consensus 209 ~~~G~aIgGl~~ge~~~~~~~ii~~~~------------~~LP-~~kPr~l~G~G~P~-~i~~~v~~GvDlF 266 (378)
=-.|.-||+ +.|.+.+.|-.++.... +.+| ..+| .|. -+..+++|||+=.
T Consensus 110 R~rGiKIGS-csGYpr~vMd~v~~~Aa~~GY~pD~vVatDdvpq~GRP-------~P~~alkNvieLGv~dv 173 (199)
T TIGR01422 110 RERGIKIGS-CSGYPREVMDIVVAEAALQGYKPDFVVATDDVPQAGRP-------YPFMALKNVIELGVDDV 173 (199)
T ss_pred HHCCCEEEC-CCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCC-------HHHHHHHHHHHCCCCCC
T ss_conf 738844424-79875789999999997478976642466224678897-------47899998987075221
No 109
>TIGR01212 TIGR01212 radical SAM protein, TIGR01212 family; InterPro: IPR005911 This uncharacterised protein family shows significant similarity to IPR005910 from INTERPRO, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain..
Probab=33.67 E-value=34 Score=14.73 Aligned_cols=90 Identities=17% Similarity=0.172 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCC------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC-----
Q ss_conf 1158999999988999999988513588------86055402344436689999887642223467664135675-----
Q gi|254780178|r 154 AEDKELKRAMELSLRWAERSLVAFGNQP------GKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGE----- 222 (378)
Q Consensus 154 ~~~k~~~~sv~rT~~w~~~~~~~~~~~~------~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge----- 222 (378)
+-..++-+-++|-|.+++=.-...+-.+ .-.|.|- -|...+.--+-|+.+++++++|.=|-+|.+-+
T Consensus 149 tah~~TL~~INRgHd~~~y~~a~~~~~krGikVC~H~I~GL--PgE~~~~~~eTak~~~~l~vdGiKiH~LhvvkGt~m~ 226 (307)
T TIGR01212 149 TAHDRTLKKINRGHDFACYVDAVKRARKRGIKVCSHVILGL--PGEDREEMLETAKIVASLDVDGIKIHPLHVVKGTKMA 226 (307)
T ss_pred CHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEEEECC--CCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEECCHHH
T ss_conf 65589999851437878999999999765988999987428--9888889999999998379884887201787357578
Q ss_pred -----------CHHHHHHHHHHHHHCCCHHHHEE
Q ss_conf -----------16789989998985077033100
Q gi|254780178|r 223 -----------PQEVMLHILSNVLPILPVERPHY 245 (378)
Q Consensus 223 -----------~~~~~~~ii~~~~~~LP~~kPr~ 245 (378)
+.|+..+.+-..++.||++--.|
T Consensus 227 k~Y~~G~~~~l~~e~Y~~~~~d~le~lpP~vv~H 260 (307)
T TIGR01212 227 KQYEKGELKTLSLEEYISLACDFLEHLPPEVVVH 260 (307)
T ss_pred HHHHCCCEEECCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 8754574010476779999999985089855998
No 110
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2; InterPro: IPR011179 This group represents the bacterial and archaeal isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP isomerase catalyses the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), and is a key enzyme in the biosynthesis of isoprenoids via the mevalonate pathway. The bacterial and archaeal IPP isomerase (type 2 enzyme) differs from that found in eukaryotes (type 1 enzyme), and requires NADPH, magnesium, and FMN for activity , .; GO: 0004452 isopentenyl-diphosphate delta-isomerase activity, 0010181 FMN binding, 0008299 isoprenoid biosynthetic process, 0005737 cytoplasm.
Probab=33.60 E-value=17 Score=16.67 Aligned_cols=217 Identities=16% Similarity=0.190 Sum_probs=124.2
Q ss_pred ECCEEEECCCEEECCCCCCCCCCCH--HHH----HHCCCCEEEEEHHHHHHCCCHHHHHHCCCCHHHCCCCCCEEECCCC
Q ss_conf 7887540585741068685688688--999----8609989993226657387689986527420110157722411454
Q gi|254780178|r 23 TPRGVIKTPAFMPVGTAGTVKAMYF--DQV----RDLGADVILGNAYHLMLRPGAERIARLGGLHKFIRWFKPILTDSGG 96 (378)
Q Consensus 23 t~~g~i~TP~flpv~t~g~v~~lt~--~~l----~~~g~~~il~Ntyhl~~~pg~~~i~~~gGlh~fl~~~~~ilTDSGg 96 (378)
+-...++-|.++--=|.|+-+.-.. ..| +++|..+-+.+.=.+.+.|... +-+-=+|+ .+=+++++..-|+
T Consensus 50 flG~~~~~P~~I~aMTGG~~~~a~~IN~~LA~aA~e~gi~mgvGSqraal~~P~~~--~tF~~vR~-~aP~~~l~AN~GA 126 (349)
T TIGR02151 50 FLGKRLKAPFLINAMTGGSEEKAGKINRKLARAAEELGIPMGVGSQRAALKDPEVA--ETFEVVRE-EAPNGPLIANIGA 126 (349)
T ss_pred ECCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEECHHHHHHCCCHHH--HHHHHHHH-HCCCCCEEECCCH
T ss_conf 46822116767614557736788899899999999819815430022211271246--66999997-6798337871787
Q ss_pred CCCCHHHHCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHH-H-HHHHHH
Q ss_conf 32101221022333310210144541587129999999873289779960121332211589999999889-9-999998
Q gi|254780178|r 97 FQVMSLSKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSL-R-WAERSL 174 (378)
Q Consensus 97 fQv~sl~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~-~-w~~~~~ 174 (378)
=|... +.+. .+|++.-++.+.|.+|-... +.+.-.+-.+.-=||.- . |+++-.
T Consensus 127 ~q~~~-------------------~~~~-~g~~~~~~aid~i~AdAL~i-----HlN~~QE~vqpEGDr~F~~G~l~~i~ 181 (349)
T TIGR02151 127 PQLVE-------------------GGKK-YGVEEAQEAIDMIEADALAI-----HLNVLQELVQPEGDRNFSKGWLEKIA 181 (349)
T ss_pred HHHHC-------------------CCCC-CCHHHHHHHHHHHHHHHHHH-----HHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 88740-------------------6534-48899999998751013355-----43233025579997015653899999
Q ss_pred HHHCCCCCCEEEEEC----CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC-----C-------C---H----HHH----
Q ss_conf 851358886055402----34443668999988764222346766413567-----5-------1---6----789----
Q gi|254780178|r 175 VAFGNQPGKALFGIV----QGGDNINLRSFSAERLKELDLKGYAIGGLAVG-----E-------P---Q----EVM---- 227 (378)
Q Consensus 175 ~~~~~~~~~~lfgiV----qGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~g-----e-------~---~----~~~---- 227 (378)
+.-+..+ ++|| .=|. =++.++.|.+.+++++=|+|.+-- | + . +.+
T Consensus 182 ~~~~~~~----vPVIvKEvG~G~----S~e~a~~L~~~Gv~aiDv~G~GGTswa~vE~~Rr~~~~~~~~~r~a~~f~~WG 253 (349)
T TIGR02151 182 EICSAVS----VPVIVKEVGFGI----SKEVAKLLADAGVKAIDVSGAGGTSWAAVENYRRAKESNQKYERLASAFSDWG 253 (349)
T ss_pred HHHHHCC----CCEEEEECCCCC----CHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCC
T ss_conf 9996528----987998215799----88999999878900887078767559999988751575235788877774148
Q ss_pred ---HHHHHHHHHCCCHHHHEECC-CCHHHHHHHHHHHCCCCEEEECCEEECC
Q ss_conf ---98999898507703310025-4101899999985389836620000023
Q gi|254780178|r 228 ---LHILSNVLPILPVERPHYLM-GVGTPDDILKSVSYGVDMFDCVMPTRAG 275 (378)
Q Consensus 228 ---~~ii~~~~~~LP~~kPr~l~-G~G~P~~i~~~v~~GvDlFD~~~ptr~A 275 (378)
...|..+...-.++.|..-. |+=+|+|++.|++||.|++=.+-|...+
T Consensus 254 ipT~~sL~~~~~~~~~~~~~iASGG~r~GlD~AKAlALGA~~~G~A~~~L~~ 305 (349)
T TIGR02151 254 IPTAASLLEVRSIDAPDAPLIASGGLRTGLDVAKALALGADAVGMARPLLKA 305 (349)
T ss_pred CCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8668999998642124773688467778889999999621188888999998
No 111
>PRK05588 histidinol-phosphatase; Provisional
Probab=33.05 E-value=35 Score=14.66 Aligned_cols=87 Identities=16% Similarity=0.189 Sum_probs=45.9
Q ss_pred EECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 71299999998732897799601213322115899999998899999998851358886055402344436689999887
Q gi|254780178|r 125 RVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAER 204 (378)
Q Consensus 125 ~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~ 204 (378)
.-++|++++...+.|-+++ .-|.+...........-.++.=.+..+++ .. ...+.|+-- |..++.-.+..+.
T Consensus 16 ~~~~ee~v~~Ai~~Gl~~i-~TdH~d~~~~~~~~~~~d~~~y~~~~~~~----~~--~~i~~GiE~-g~~~~~~~~~~~~ 87 (256)
T PRK05588 16 KMKIEEAIKKAKKNNLGII-ITEHMDLNLPDKNKFCFDIPSYFKEYSKY----RN--NKLLLGIEL-GMEKDLIEENKEI 87 (256)
T ss_pred CCCHHHHHHHHHHCCCCEE-EECCCCCCCCCCCCCCCCHHHHHHHHHHH----HC--CCCCEEEEE-CCCCCCHHHHHHH
T ss_conf 7769999999998699889-96688889998543456999999999998----54--786457996-8377858999998
Q ss_pred HHHHHHHHHHHHCCCC
Q ss_conf 6422234676641356
Q gi|254780178|r 205 LKELDLKGYAIGGLAV 220 (378)
Q Consensus 205 l~~~~~~G~aIgGl~~ 220 (378)
+.+.+|| |.||+++.
T Consensus 88 l~~~~fD-yvIGSvH~ 102 (256)
T PRK05588 88 INKYEFD-YIIGSIHL 102 (256)
T ss_pred HHCCCCC-EEEEEEEE
T ss_conf 7348988-79986776
No 112
>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]
Probab=32.95 E-value=35 Score=14.65 Aligned_cols=11 Identities=36% Similarity=0.241 Sum_probs=5.2
Q ss_pred HHHHHHHHHHH
Q ss_conf 66899998876
Q gi|254780178|r 195 INLRSFSAERL 205 (378)
Q Consensus 195 ~dLR~~Sa~~l 205 (378)
.|+|.+--+.+
T Consensus 64 ~DlR~~V~e~l 74 (153)
T COG3088 64 RDLRHQVYELL 74 (153)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 113
>TIGR01236 D1pyr5carbox1 1-pyrroline-5-carboxylate dehydrogenase; InterPro: IPR005931 The delta(1)-pyrroline-5-carboxylate synthetase (1.5.1.12 from EC) a mitochondrial inner membrane, ATP- and NADPH-dependent, bifunctional enzyme, catalyzes the reduction of glutamate to delta1-pyrroline-5-carboxylate, a critical step in the de novo biosynthesis of proline and ornithine. It is the rate-limiting enzyme in proline biosynthesis and is subject to feedback inhibition by proline. 1-pyrroline-5-carboxylate + NAD+ + H2O = L-glutamate + NADH This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase.; GO: 0003842 1-pyrroline-5-carboxylate dehydrogenase activity, 0006561 proline biosynthetic process, 0005759 mitochondrial matrix.
Probab=32.68 E-value=31 Score=15.00 Aligned_cols=16 Identities=50% Similarity=0.771 Sum_probs=9.4
Q ss_pred CCCCHHHCCCCHHHHHHHH
Q ss_conf 6698133688989998868
Q gi|254780178|r 304 ESHCSALRDYSRAYLHHLL 322 (378)
Q Consensus 304 ~C~C~~C~~ytraYl~HL~ 322 (378)
|=.|.+| ||.|+=|=.
T Consensus 321 GQKCSA~---SRLy~P~S~ 336 (551)
T TIGR01236 321 GQKCSAA---SRLYVPHSL 336 (551)
T ss_pred CCHHHHH---HHHHHHHCC
T ss_conf 7216888---774443120
No 114
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=32.56 E-value=20 Score=16.34 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=27.7
Q ss_pred HHHHEECCC--CHHHHHHHHHHHCCCCEEEECCEEECCC
Q ss_conf 033100254--1018999999853898366200000233
Q gi|254780178|r 240 VERPHYLMG--VGTPDDILKSVSYGVDMFDCVMPTRAGR 276 (378)
Q Consensus 240 ~~kPr~l~G--~G~P~~i~~~v~~GvDlFD~~~ptr~Ar 276 (378)
.++|.-+.| +|+|.-++.++.+|+|-| |+.|....+
T Consensus 495 ~g~~v~iCGEmA~dp~~~~lLlglG~~~l-Sm~p~~i~~ 532 (575)
T PRK11177 495 EGKWTGMCGELAGDERATLLLLGMGLDEF-SMSAISIPR 532 (575)
T ss_pred CCCEEEECCCCCCCHHHHHHHHHCCCCEE-EECHHHHHH
T ss_conf 59989976686569757999997799838-688888899
No 115
>pfam01215 COX5B Cytochrome c oxidase subunit Vb.
Probab=32.54 E-value=32 Score=14.92 Aligned_cols=31 Identities=29% Similarity=0.404 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHCCCCEEEECCEEECCCCCCCC
Q ss_conf 01899999985389836620000023320024
Q gi|254780178|r 250 GTPDDILKSVSYGVDMFDCVMPTRAGRHGLAF 281 (378)
Q Consensus 250 G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~ 281 (378)
|.-..-+.+...|+|.||- .|...++.|+.=
T Consensus 15 GlEr~Ell~~~~G~D~fd~-~~~~~~~~GT~e 45 (99)
T pfam01215 15 GLERRELLRELFGHDVFDI-KPLDTSRKGTLK 45 (99)
T ss_pred CHHHHHHHHHHCCCCCCCC-CCCCCCCCCCCC
T ss_conf 5789999998719994557-754348898765
No 116
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=32.43 E-value=36 Score=14.60 Aligned_cols=63 Identities=17% Similarity=0.264 Sum_probs=33.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHCC-CHHHHEEC
Q ss_conf 60554023444366899998876422234676641-356751678998999898507-70331002
Q gi|254780178|r 183 KALFGIVQGGDNINLRSFSAERLKELDLKGYAIGG-LAVGEPQEVMLHILSNVLPIL-PVERPHYL 246 (378)
Q Consensus 183 ~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgG-l~~ge~~~~~~~ii~~~~~~L-P~~kPr~l 246 (378)
+.+|.=|--+..-|-|....+.+.+.+.. ...|| +++||+.+++.+.+....++. |..-|...
T Consensus 166 ~~~y~~I~tt~t~edR~~tl~~vk~~Gi~-vcsGgI~GlGEs~eDri~~l~~L~~l~~pdsVPIn~ 230 (335)
T COG0502 166 PEFYENIITTRTYEDRLNTLENVREAGIE-VCSGGIVGLGETVEDRAELLLELANLPTPDSVPINF 230 (335)
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHCCCC-CCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 78875657898888999999999980985-045127618998889999999997189988542321
No 117
>pfam00809 Pterin_bind Pterin binding enzyme. This family includes a variety of pterin binding enzymes that all adopt a TIM barrel fold. The family includes dihydropteroate synthase EC:2.5.1.15 as well as a group methyltransferase enzymes including methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) that catalyses a key step in the Wood-Ljungdahl pathway of carbon dioxide fixation. It transfers the N5-methyl group from methyltetrahydrofolate (CH3-H4folate) to a cob(I)amide centre in another protein, the corrinoid iron-sulfur protein. MeTr is a member of a family of proteins that includes methionine synthase and methanogenic enzymes that activate the methyl group of methyltetra-hydromethano(or -sarcino)pterin.
Probab=32.18 E-value=36 Score=14.57 Aligned_cols=14 Identities=14% Similarity=0.211 Sum_probs=4.8
Q ss_pred HHHHHHHHHHCCCC
Q ss_conf 18999999853898
Q gi|254780178|r 251 TPDDILKSVSYGVD 264 (378)
Q Consensus 251 ~P~~i~~~v~~GvD 264 (378)
+|..+-.|++.|+|
T Consensus 79 ~~~v~~~al~~G~~ 92 (208)
T pfam00809 79 NAEVAEAALKAGAD 92 (208)
T ss_pred CHHHHHHHHHCCCC
T ss_conf 49999999981993
No 118
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=32.06 E-value=36 Score=14.56 Aligned_cols=141 Identities=17% Similarity=0.280 Sum_probs=53.4
Q ss_pred CCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCC-CHHHHHHHHHHHHHHHHHHHHHHCC---CCCCEE
Q ss_conf 331021014454158712999999987328977996012133221-1589999999889999999885135---888605
Q gi|254780178|r 110 EQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPA-EDKELKRAMELSLRWAERSLVAFGN---QPGKAL 185 (378)
Q Consensus 110 ~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~-~~k~~~~sv~rT~~w~~~~~~~~~~---~~~~~l 185 (378)
+.|+.+-+-++|... . .+..++....++-+++.--.-.|... ....-..-++.-..|+++.++...+ ..++.+
T Consensus 94 ~~G~~iINDVsg~~~--d-~~m~~~va~~~~~~ilmH~~~~p~~~~~~~~~~~~~~~v~~~~~~~i~~~~~~Gi~~~~Ii 170 (258)
T cd00423 94 KAGADIINDVSGGRG--D-PEMAPLAAEYGAPVVLMHMDGTPQTMQNNPYYADVVDEVVEFLEERVEAATEAGIPPEDII 170 (258)
T ss_pred HCCCCEEECCHHHHC--C-HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHEEE
T ss_conf 859986824003106--5-5799999974998898305788655666898664899999999999999998699930088
Q ss_pred EEECCC-CCCHHHHHHHHHHHHHHH----HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHH
Q ss_conf 540234-443668999988764222----346766413567516789989998985077033100254101899999985
Q gi|254780178|r 186 FGIVQG-GDNINLRSFSAERLKELD----LKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGVGTPDDILKSVS 260 (378)
Q Consensus 186 fgiVqG-G~~~dLR~~Sa~~l~~~~----~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~ 260 (378)
+=|=-| |...+ ++.+-+..++ +.|+.+ -+|-+. ...+..+...-|.++. .|+-.....++.
T Consensus 171 iDPGiGFgK~~~---~n~~ll~~l~~~~~~~g~Pi---lvG~SR---Ksfi~~~~~~~~~~Rl-----~~t~a~~~~a~~ 236 (258)
T cd00423 171 LDPGIGFGKTEE---HNLELLRRLDAFRELPGLPL---LLGVSR---KSFLGDLLSVGPKDRL-----AGTAAFLAAAIL 236 (258)
T ss_pred ECCCCCCCCCHH---HHHHHHHHHHHHHHCCCCCE---EEEECH---HHHHHHHCCCCHHHHH-----HHHHHHHHHHHH
T ss_conf 747767788878---89999997999972159946---986029---8999875499868740-----989999999998
Q ss_pred CCCCEEE
Q ss_conf 3898366
Q gi|254780178|r 261 YGVDMFD 267 (378)
Q Consensus 261 ~GvDlFD 267 (378)
.|+|++=
T Consensus 237 ~Ga~ilR 243 (258)
T cd00423 237 NGADIVR 243 (258)
T ss_pred CCCCEEE
T ss_conf 7999999
No 119
>PRK00733 hppA membrane-bound proton-translocating pyrophosphatase; Validated
Probab=32.03 E-value=14 Score=17.41 Aligned_cols=40 Identities=25% Similarity=0.468 Sum_probs=28.9
Q ss_pred HHHHHHHHHCCCHHHHEECCCCHHHHHHHHHH--------HCCCCEEEECCEEE
Q ss_conf 98999898507703310025410189999998--------53898366200000
Q gi|254780178|r 228 LHILSNVLPILPVERPHYLMGVGTPDDILKSV--------SYGVDMFDCVMPTR 273 (378)
Q Consensus 228 ~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v--------~~GvDlFD~~~ptr 273 (378)
.+++..+-..+|+|-|| +|-.|.+.| -+|.|+|+|-.-+.
T Consensus 192 ADLVGKVEagIPEDDPR------NPAvIADNVGDNVGDvAGmgADLFESy~~si 239 (682)
T PRK00733 192 ADLVGKVEAGIPEDDPR------NPAVIADNVGDNVGDCAGMGADLFESYVVTI 239 (682)
T ss_pred CHHHHHHHCCCCCCCCC------CCCHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 02220353399989999------9525777507752010134530588889999
No 120
>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=31.87 E-value=29 Score=15.21 Aligned_cols=110 Identities=21% Similarity=0.256 Sum_probs=49.2
Q ss_pred EEEEECCCCCCHHHH-----HHHHHHHHHHHH--HHHHHHCCCCCCCHHHH---HHHHHHHHH-CCCHHHHEECCCCHHH
Q ss_conf 055402344436689-----999887642223--46766413567516789---989998985-0770331002541018
Q gi|254780178|r 184 ALFGIVQGGDNINLR-----SFSAERLKELDL--KGYAIGGLAVGEPQEVM---LHILSNVLP-ILPVERPHYLMGVGTP 252 (378)
Q Consensus 184 ~lfgiVqGG~~~dLR-----~~Sa~~l~~~~~--~G~aIgGl~~ge~~~~~---~~ii~~~~~-~LP~~kPr~l~G~G~P 252 (378)
.++-.--||-+.+.- .-+.++....|- .|--| ++. +...| +|++++..- .+|.++-..+ =||
T Consensus 167 kIiLTASGGPF~~~~~~~l~~vT~~~AL~HP~W~MG~KI---SID-SATmmNKgLEvIEA~~LF~l~~~kI~vv---IHP 239 (392)
T PRK12464 167 KIIVTASGGAFRDKTREELATLTAKDALKHPNWLMGRKI---TVD-SATLMNKGLEVIEAHWLFGIPYEKIDVL---IHP 239 (392)
T ss_pred EEEEECCCCCHHCCCHHHHHCCCHHHHCCCCCCCCCCCC---CEE-HHHHHHHHHHHHHHHHHHCCCHHHEEEE---ECC
T ss_conf 899965784141378998708798887049898788963---100-5888998999999999809988997767---760
Q ss_pred HHHHHHHHCCCCEEEECCEEECCCCC------CCCCCC-------CCHHHHHHHHCCCCCCCCCC
Q ss_conf 99999985389836620000023320------024562-------10021012322368855986
Q gi|254780178|r 253 DDILKSVSYGVDMFDCVMPTRAGRHG------LAFTRF-------GKINLRNARHIDDMRPLDAE 304 (378)
Q Consensus 253 ~~i~~~v~~GvDlFD~~~ptr~Ar~G------~~~t~~-------g~i~l~~~~~~~d~~pi~~~ 304 (378)
+.++++. |..-|-+.-+..+... .++++. ..+++.+.. .-+|+++|..
T Consensus 240 qSiIHs~---V~f~DGs~~aq~~~pDMriPI~yaL~yP~r~~~~~~~l~~~~~~-~L~F~~~d~~ 300 (392)
T PRK12464 240 QSIIHSL---VEFIDGSVLAQLGAPDMRMPIQYALHYPERLPSSYEKLNLAEIG-SLHFEKPDLE 300 (392)
T ss_pred HHHHHEE---EEECCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCHHHCC-CCCCCCCCHH
T ss_conf 1434403---69679828887359985889998845800046776656765557-7544689946
No 121
>TIGR01001 metA homoserine O-succinyltransferase; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase (2.3.1.46 from EC), catalyses the first step in the biosynthesis of methionine. Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine. ; GO: 0008415 acyltransferase activity, 0019281 methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm.
Probab=31.78 E-value=26 Score=15.52 Aligned_cols=42 Identities=21% Similarity=0.271 Sum_probs=25.5
Q ss_pred HHHHH--HHHHHHHHHHHHHHHCCCCCCCH-------HHHHHHHHHHHHCC
Q ss_conf 89999--88764222346766413567516-------78998999898507
Q gi|254780178|r 197 LRSFS--AERLKELDLKGYAIGGLAVGEPQ-------EVMLHILSNVLPIL 238 (378)
Q Consensus 197 LR~~S--a~~l~~~~~~G~aIgGl~~ge~~-------~~~~~ii~~~~~~L 238 (378)
|.+.. -+.+.++.|||+.|-|-+++.-. +++.+|+++++.+.
T Consensus 85 l~~FY~~fe~vk~~~FDG~IvTGAP~el~~Fe~VaYW~~l~~i~~w~k~~V 135 (305)
T TIGR01001 85 LNKFYKTFEEVKDRKFDGLIVTGAPVELVDFEDVAYWEELKEIMEWSKQNV 135 (305)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 999865478885127881588477624466443223689999999875067
No 122
>PRK01295 phosphoglyceromutase; Provisional
Probab=31.74 E-value=37 Score=14.52 Aligned_cols=150 Identities=17% Similarity=0.178 Sum_probs=78.2
Q ss_pred CHHHCCCCCCEEECCCCCCCCHHHHCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHH
Q ss_conf 20110157722411454321012210223333102101445415871299999998732897799601213322115899
Q gi|254780178|r 80 LHKFIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKEL 159 (378)
Q Consensus 80 lh~fl~~~~~ilTDSGgfQv~sl~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~ 159 (378)
-++|-+|..+=||+.|=-|+-.++..- .+ +.+..|++ +.++-+|+
T Consensus 18 ~~r~qG~~D~~Lte~G~~QA~~~~~~L--~~-------------------------~~~~~d~i--------ysSpL~RA 62 (206)
T PRK01295 18 KNLFTGWRDPDLTEQGVAEAKAAGRKL--KA-------------------------AGLKFDIA--------FTSALSRA 62 (206)
T ss_pred CCCEECCCCCCCCHHHHHHHHHHHHHH--HH-------------------------CCCCCCEE--------EECCCHHH
T ss_conf 396638999996989999999999999--97-------------------------69977889--------97812578
Q ss_pred HHHHHHHHHHHHHH-HHHHCC-CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH-HHHHH----
Q ss_conf 99999889999999-885135-888605540234443668999988764222346766413567516789-98999----
Q gi|254780178|r 160 KRAMELSLRWAERS-LVAFGN-QPGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVM-LHILS---- 232 (378)
Q Consensus 160 ~~sv~rT~~w~~~~-~~~~~~-~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~-~~ii~---- 232 (378)
.+..+.-.+-+.+. +....+ .-.-.=||.-+|=.+.|.+.+..++....--+.|.. ..+.||+..++ .+++.
T Consensus 63 ~~TA~~I~~~lg~~~~~v~~d~~LrE~~fG~wEG~~~~ei~~~~~~~~~~~~~~~~~~-~pP~GES~~~~~~Rv~~~~~~ 141 (206)
T PRK01295 63 QHTCQLILEELGQPGLETIRDQALNERDYGDLSGLNKDDARAKWGEEQVHIWRRSYDV-PPPGGESLKDTGARVLPYYLQ 141 (206)
T ss_pred HHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHCCCCC-CCCCCCCHHHHHHHHHHHHHH
T ss_conf 9999999998278899837557525477533469989999986789999986534678-995961399999998899999
Q ss_pred HHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCE
Q ss_conf 898507703310025410189999998538983
Q gi|254780178|r 233 NVLPILPVERPHYLMGVGTPDDILKSVSYGVDM 265 (378)
Q Consensus 233 ~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDl 265 (378)
.+.+.+.+++...+-+-|...-.+.+..+|++.
T Consensus 142 ~i~~~~~~g~~VLvVsHG~~iR~l~~~~~gl~~ 174 (206)
T PRK01295 142 EILPRVLRGERVLVAAHGNSLRALIMVLDGLTP 174 (206)
T ss_pred HHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCH
T ss_conf 999998779969999585799999999809898
No 123
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=31.31 E-value=37 Score=14.48 Aligned_cols=71 Identities=18% Similarity=0.139 Sum_probs=46.8
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC---HHHHEECCCCHHHHHHHHHHH
Q ss_conf 40234443668999988764222346766413567516789989998985077---033100254101899999985
Q gi|254780178|r 187 GIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILP---VERPHYLMGVGTPDDILKSVS 260 (378)
Q Consensus 187 giVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP---~~kPr~l~G~G~P~~i~~~v~ 260 (378)
-+|-|+.|.-+.++--+... +|.-.-||- ++...++.....++++...+| +++-..+||-|+-+.-..+-+
T Consensus 83 hiIpG~EyEklvr~V~~~~~--dF~~lkig~-PlLy~k~DYe~~v~aik~~~ppl~k~e~~vlmgHGt~h~s~~~Ya 156 (265)
T COG4822 83 HIIPGIEYEKLVREVNKYSN--DFKRLKIGR-PLLYYKNDYEICVEAIKDQIPPLNKDEILVLMGHGTDHHSNAAYA 156 (265)
T ss_pred EECCCHHHHHHHHHHHHHHH--HHHEEECCC-CEEECHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHH
T ss_conf 21472679999999998763--303146177-315401059999999997668867672799983588751778999
No 124
>TIGR00854 pts-sorbose PTS system, mannose/fructose/sorbose family, IIB component; InterPro: IPR004720 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This entry is specific for the IIB components of this family of PTS transporters .; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm.
Probab=30.88 E-value=36 Score=14.60 Aligned_cols=61 Identities=20% Similarity=0.210 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCH-HHHEECCCCHHHHHHHHHHHCCCCEEE
Q ss_conf 689999887642223467664135675167899899989850770-331002541018999999853898366
Q gi|254780178|r 196 NLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPV-ERPHYLMGVGTPDDILKSVSYGVDMFD 267 (378)
Q Consensus 196 dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~-~kPr~l~G~G~P~~i~~~v~~GvDlFD 267 (378)
|.|+.=.+..++. .|+++.-+++ +. ++...-.--|. .|-.|| +-+|.+++.+|+-||++=+
T Consensus 40 ~v~~~L~~~~a~~--yG~~v~~~s~----~K---~i~~~H~a~~~~~~i~l~--f~~P~dv~~Lv~~Gv~i~~ 101 (152)
T TIGR00854 40 EVRQTLMEIVAPE--YGVKVRFVSL----EK---VIKVIHKAAYEDQKIFLL--FKTPADVLTLVEGGVPIKT 101 (152)
T ss_pred HHHHHHHHHHHHH--CCCEEEEEEH----HH---HHHHHCCCCCCCCEEEEE--ECCCHHHHHHHHCCCCEEE
T ss_conf 7899999874220--1957999865----14---676618988668579999--7392799899874862303
No 125
>PRK07094 biotin synthase; Provisional
Probab=30.77 E-value=38 Score=14.42 Aligned_cols=74 Identities=20% Similarity=0.293 Sum_probs=33.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHH---HHHHHCCCC-CCCHHHHHHHHHHHHHC----------CCH-HHHEECCC
Q ss_conf 0554023444366899998876422234---676641356-75167899899989850----------770-33100254
Q gi|254780178|r 184 ALFGIVQGGDNINLRSFSAERLKELDLK---GYAIGGLAV-GEPQEVMLHILSNVLPI----------LPV-ERPHYLMG 248 (378)
Q Consensus 184 ~lfgiVqGG~~~dLR~~Sa~~l~~~~~~---G~aIgGl~~-ge~~~~~~~ii~~~~~~----------LP~-~kPr~l~G 248 (378)
.+|.-|.-+...+.|.++.+.+.+.++. |.. +++ ||+.+.+.+.+....++ +|. +-|..=.-
T Consensus 153 ~~y~~i~p~~t~~~Rl~~l~~~k~~G~~v~sG~i---iGlpGET~edr~~~l~~LreL~~~~v~i~~fiP~~gTPl~~~~ 229 (323)
T PRK07094 153 ELYEKLHPGMSFENRIQCLKDLKELGYEVGSGFM---VGLPGQTLEDLADDILFLKELDLDMIGIGPFIPHPDTPLADEK 229 (323)
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEE---ECCCCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCC
T ss_conf 9867758999989999999999983981043027---7989999999999999998379988677255179999988999
Q ss_pred CHHHHHHHHHHH
Q ss_conf 101899999985
Q gi|254780178|r 249 VGTPDDILKSVS 260 (378)
Q Consensus 249 ~G~P~~i~~~v~ 260 (378)
.++|++.+..|+
T Consensus 230 ~~~~~~~lr~iA 241 (323)
T PRK07094 230 GGSLELTLKVLA 241 (323)
T ss_pred CCCHHHHHHHHH
T ss_conf 979999999999
No 126
>PRK05567 inositol-5'-monophosphate dehydrogenase; Reviewed
Probab=30.67 E-value=38 Score=14.41 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHC---CCHHHHHH
Q ss_conf 999999999999985---99899999
Q gi|254780178|r 340 YYQDLMKEIRSAIAE---DCFVDFAM 362 (378)
Q Consensus 340 ~~~~~~~~iR~aI~~---g~f~~~~~ 362 (378)
...+++..+|.+.-. .++.++.+
T Consensus 429 ~i~~l~gGlrs~m~y~Ga~~i~el~~ 454 (486)
T PRK05567 429 IIHQLMGGLRSGMGYTGAATIEELRE 454 (486)
T ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 99998777754043778776999985
No 127
>pfam09419 DUF2010 Protein of unknown function. This is a family of proteins which show sequence similarity to the HAD superfamily of hydrolases.
Probab=29.95 E-value=21 Score=16.08 Aligned_cols=37 Identities=16% Similarity=0.252 Sum_probs=28.1
Q ss_pred CEEECCCCCCCCCCCHHHHHHCCCCEEE---EEHHHHHHC
Q ss_conf 5741068685688688999860998999---322665738
Q gi|254780178|r 32 AFMPVGTAGTVKAMYFDQVRDLGADVIL---GNAYHLMLR 68 (378)
Q Consensus 32 ~flpv~t~g~v~~lt~~~l~~~g~~~il---~Ntyhl~~~ 68 (378)
-++|-.+..++.+|+.+.|++.|+++++ .||...+..
T Consensus 16 Ll~P~~~V~sI~~Id~~~Lk~~Gik~lI~D~DNTL~~~~~ 55 (166)
T pfam09419 16 LCLPHLTVPTFRQLPIPILKKVGIKAVVLDKDNCLTLPHD 55 (166)
T ss_pred CCCCCEEECCHHHCCHHHHHHCCCCEEEECCCCCCCCCCC
T ss_conf 4588666086343997787555962899816674057898
No 128
>PRK13124 consensus
Probab=29.58 E-value=40 Score=14.28 Aligned_cols=197 Identities=19% Similarity=0.162 Sum_probs=91.9
Q ss_pred CCCEEECCCCCCCCC-CCHHHH---HHCCCCEE-EEEHHHHHHCCC-------HHHHHHCCCCHHHCCCCCCEEECCCCC
Q ss_conf 585741068685688-688999---86099899-932266573876-------899865274201101577224114543
Q gi|254780178|r 30 TPAFMPVGTAGTVKA-MYFDQV---RDLGADVI-LGNAYHLMLRPG-------AERIARLGGLHKFIRWFKPILTDSGGF 97 (378)
Q Consensus 30 TP~flpv~t~g~v~~-lt~~~l---~~~g~~~i-l~Ntyhl~~~pg-------~~~i~~~gGlh~fl~~~~~ilTDSGgf 97 (378)
-|+|+|+.+.|-..- .+.+.+ .+.|++++ +.=.|--=.-.| .+.+++=-.+.+++.+
T Consensus 8 r~ali~yitaG~P~~e~s~~~~~~l~~~GaDiiElGiPfSDP~ADGpvIq~A~~~AL~~G~~~~~~~~~----------- 76 (257)
T PRK13124 8 KKLFIPFITAGDPDPETTIDLVLALEEAGADILELGIPYSDPLADGPVIQRASKRALNGGMNIVKAMEL----------- 76 (257)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHH-----------
T ss_conf 956898863708998999999999997699999978988887765799999999999769968999999-----------
Q ss_pred CCCHHHHCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 21012210223333102101445415871299999998732897799601213322115899999998899999998851
Q gi|254780178|r 98 QVMSLSKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAF 177 (378)
Q Consensus 98 Qv~sl~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~ 177 (378)
+...++..+-.+-+.++++ -......|.+++--...|.|=.+.-|-+. |....|...|.+.
T Consensus 77 ----~~~~r~~~~~pivlM~Y~N-~i~~~G~e~F~~~~~~~Gv~GvIipDLP~-------------eE~~~~~~~~~~~- 137 (257)
T PRK13124 77 ----VGKMRKKVTIPIVYFTYYN-PVLQYGLEKFFALARENGIDGLLIPDLPL-------------EESGELQEICDKY- 137 (257)
T ss_pred ----HHHHHCCCCCCEEEEEHHH-HHHHHHHHHHHHHHHHCCCCEEECCCCCH-------------HHHHHHHHHHHHC-
T ss_conf ----9985244788889975007-89875799999999975998477789997-------------9999999999866-
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-CCC---CHHHHHHHHHHHHHCCCHHHHEEC-CCCHHH
Q ss_conf 358886055402344436689999887642223467664135-675---167899899989850770331002-541018
Q gi|254780178|r 178 GNQPGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLA-VGE---PQEVMLHILSNVLPILPVERPHYL-MGVGTP 252 (378)
Q Consensus 178 ~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~-~ge---~~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P 252 (378)
.- .--.+..| .. +.|.+.+-..+. + +-|.++-.+ .|+ ..+...+.+..+...- +.|..+ ||+.+|
T Consensus 138 gl-~~I~lvaP----Ts-~~Ri~~i~~~s~-g-FiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t--~~Pv~vGFGI~~~ 207 (257)
T PRK13124 138 GI-YLIPLVAP----TS-KERIKKIAEQAE-G-FVYCVSSLGVTGVREEIETDLEEFIRTVKQYS--NVPVAVGFGISTP 207 (257)
T ss_pred CC-CEEEEECC----CC-HHHHHHHHHCCC-C-CEEEEECCCCCCCCCCCHHHHHHHHHHHHHCC--CCCEEEEECCCCH
T ss_conf 87-35788479----96-799999985489-8-38996246667876556088999999998617--9983898446999
Q ss_pred HHHHHHHHCCCCEEE
Q ss_conf 999999853898366
Q gi|254780178|r 253 DDILKSVSYGVDMFD 267 (378)
Q Consensus 253 ~~i~~~v~~GvDlFD 267 (378)
+++- .+..+.|-.-
T Consensus 208 e~v~-~~~~~ADGvI 221 (257)
T PRK13124 208 EQVQ-KMKEIADGVV 221 (257)
T ss_pred HHHH-HHHHHCCEEE
T ss_conf 9999-9980199999
No 129
>pfam03030 H_PPase Inorganic H+ pyrophosphatase. The H+ pyrophosphatase is an transmembrane proton pump involved in establishing the H+ electrochemical potential difference between the vacuole lumen and the cell cytosol. Vacuolar-type H(+)-translocating inorganic pyrophosphatases have long been considered to be restricted to plants and to a few species of photo-trophic bacteria. However, in recent investigations, these pyrophosphatases have been found in organisms as disparate as thermophilic Archaea and parasitic protists.
Probab=29.56 E-value=20 Score=16.33 Aligned_cols=37 Identities=24% Similarity=0.500 Sum_probs=23.9
Q ss_pred HHHHHHHHHCCCHHHHEECCCCHHHHHHHHHH--------HCCCCEEEECC
Q ss_conf 98999898507703310025410189999998--------53898366200
Q gi|254780178|r 228 LHILSNVLPILPVERPHYLMGVGTPDDILKSV--------SYGVDMFDCVM 270 (378)
Q Consensus 228 ~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v--------~~GvDlFD~~~ 270 (378)
.+++..+-..+|+|-|| +|-.|.+.| -+|.|+|+|-.
T Consensus 183 ADLVGKVEagIPEDDPR------NPAvIADNVGDNVGDvAGmgADLFESy~ 227 (669)
T pfam03030 183 ADLVGKVEAGIPEDDPR------NPAVIADNVGDNVGDVAGMGADLFESYA 227 (669)
T ss_pred HHHHHHHHCCCCCCCCC------CHHHHHHHHCCCCCCCCCCCCHHHHHHH
T ss_conf 45530241499877898------7067878616553220023411688899
No 130
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=29.39 E-value=40 Score=14.26 Aligned_cols=36 Identities=22% Similarity=0.379 Sum_probs=23.5
Q ss_pred HHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCE
Q ss_conf 98999898507703310025410189999998538983
Q gi|254780178|r 228 LHILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDM 265 (378)
Q Consensus 228 ~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDl 265 (378)
++-++++.+.- +.|..+-|+-+|+|-..|++.|+|-
T Consensus 234 W~di~wlr~~w--~~plvlKGIl~~eDA~~A~~~G~dg 269 (381)
T PRK11197 234 WKDLEWIREFW--DGPMVIKGILDPEDARDAVRFGADG 269 (381)
T ss_pred HHHHHHHHHHC--CCCEEEECCCCHHHHHHHHHCCCCE
T ss_conf 99999999872--9976785258899999999669988
No 131
>pfam08436 DXP_redisom_C 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal. This domain is found to the C-terminus of pfam02670 domains in bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases which catalyse the formation of 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose-5-phosphate in the presence of NADPH.
Probab=29.35 E-value=27 Score=15.44 Aligned_cols=24 Identities=46% Similarity=0.595 Sum_probs=14.5
Q ss_pred CCCEEECCCC-CCCCHHHHCCCCCC
Q ss_conf 7722411454-32101221022333
Q gi|254780178|r 87 FKPILTDSGG-FQVMSLSKLCSIDE 110 (378)
Q Consensus 87 ~~~ilTDSGg-fQv~sl~~~~~~~~ 110 (378)
...+||-||| |.-.++....+++.
T Consensus 24 ~kI~LTASGGPF~~~~~~~l~~vt~ 48 (84)
T pfam08436 24 EKLILTASGGPFRDWSLEELANVTP 48 (84)
T ss_pred EEEEEECCCHHHHHHHHHHHCCCCH
T ss_conf 0799975674265015888578679
No 132
>PRK10810 anti-sigma28 factor FlgM; Provisional
Probab=28.11 E-value=42 Score=14.12 Aligned_cols=13 Identities=15% Similarity=0.368 Sum_probs=5.4
Q ss_pred HHHHHHHHHCCCH
Q ss_conf 9999999985998
Q gi|254780178|r 345 MKEIRSAIAEDCF 357 (378)
Q Consensus 345 ~~~iR~aI~~g~f 357 (378)
.++||+||++|++
T Consensus 64 Ve~ik~AI~~G~L 76 (98)
T PRK10810 64 VEALKQAIRNGEL 76 (98)
T ss_pred HHHHHHHHHCCCC
T ss_conf 9999999985970
No 133
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=27.68 E-value=43 Score=14.07 Aligned_cols=31 Identities=23% Similarity=0.175 Sum_probs=19.7
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEECCEEECCC
Q ss_conf 2541018999999853898366200000233
Q gi|254780178|r 246 LMGVGTPDDILKSVSYGVDMFDCVMPTRAGR 276 (378)
Q Consensus 246 l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar 276 (378)
..|-=++..+..-...|||.+-+.++|..++
T Consensus 239 aSGgIt~~ni~~yA~tGVD~IS~galths~~ 269 (280)
T COG0157 239 ASGGITLENIREYAETGVDVISVGALTHSAP 269 (280)
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 7589787789998626997998073304775
No 134
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=27.66 E-value=43 Score=14.07 Aligned_cols=37 Identities=30% Similarity=0.333 Sum_probs=26.2
Q ss_pred HHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCEE
Q ss_conf 989998985077033100254101899999985389836
Q gi|254780178|r 228 LHILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDMF 266 (378)
Q Consensus 228 ~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlF 266 (378)
++-++++.+.- ..|..+-||-+|+|-..|++.|+|-.
T Consensus 242 W~di~wlr~~w--~~plilKGI~~~eDA~~A~~~G~dgI 278 (383)
T cd03332 242 WEDLAFLREWT--DLPIVLKGILHPDDARRAVEAGVDGV 278 (383)
T ss_pred HHHHHHHHHHC--CCCEEECCCCCHHHHHHHHHCCCCEE
T ss_conf 89999999876--99853235689999999997599889
No 135
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase; InterPro: IPR010946 This entry represents geranylgeranylglyceryl phosphate synthase which catalyses the first committed step in the synthesis of ether-linked membrane lipids in archaea ..
Probab=27.57 E-value=43 Score=14.06 Aligned_cols=70 Identities=21% Similarity=0.250 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEE
Q ss_conf 68999988764222346766413--5675167899899989850770331002-54101899999985389836
Q gi|254780178|r 196 NLRSFSAERLKELDLKGYAIGGL--AVGEPQEVMLHILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMF 266 (378)
Q Consensus 196 dLR~~Sa~~l~~~~~~G~aIgGl--~~ge~~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlF 266 (378)
+-++..+-+.+.-++.|+-.-=| .-|-++-...|+|..+++..|. -|.-+ =|+-+|+.=...|..|.|+.
T Consensus 137 ~~~~~A~~Y~LAA~Y~G~~~vYLEAGSGAs~Pv~~e~i~~~k~~~~~-I~LIVGGGIr~~EiA~~~v~aGAd~I 209 (212)
T TIGR01769 137 DKPEIAAAYALAAKYLGFKLVYLEAGSGASEPVSPETISLVKKKISS-IPLIVGGGIRSPEIALKIVLAGADVI 209 (212)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCC-CCEEECCCCCCHHHHHHHHHHCCCEE
T ss_conf 86668999999998741351213105786667866799999985489-72775277588899999997089826
No 136
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=27.55 E-value=43 Score=14.05 Aligned_cols=52 Identities=19% Similarity=0.185 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHC-CCHHHHEECCCCHHHHHHHHHHHCCCCEEEECCEEECCC
Q ss_conf 7899899989850-770331002541018999999853898366200000233
Q gi|254780178|r 225 EVMLHILSNVLPI-LPVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGR 276 (378)
Q Consensus 225 ~~~~~ii~~~~~~-LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar 276 (378)
+++.++++.+... +.+.-..-..|-=++..+......|||.+-...+|..++
T Consensus 215 e~~~~~v~~l~~~~~~~~v~ieaSGGI~~~ni~~ya~tGVD~IS~g~lt~s~~ 267 (279)
T PRK08385 215 EEIREVIEALKELGLREKVKIEVSGGITPETIAEYAKLDVDVISLGALTHSVR 267 (279)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEECCHHHCCCC
T ss_conf 99999999987507689789999789989999999855989998497776996
No 137
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=27.48 E-value=43 Score=14.05 Aligned_cols=37 Identities=27% Similarity=0.308 Sum_probs=19.5
Q ss_pred HHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCEE
Q ss_conf 989998985077033100254101899999985389836
Q gi|254780178|r 228 LHILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDMF 266 (378)
Q Consensus 228 ~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlF 266 (378)
++-|.+..+.- ..|..+-|+-+|+|-..+++.|+|-.
T Consensus 202 w~di~~lr~~~--~~plivKGIl~~~DA~~A~~~G~dgI 238 (344)
T cd02922 202 WDDIKWLRKHT--KLPIVLKGVQTVEDAVLAAEYGVDGI 238 (344)
T ss_pred HHHHHHHHHHC--CCCEEECCCCCHHHHHHHHHCCCCEE
T ss_conf 99999999866--99701002577999999996599889
No 138
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=27.30 E-value=43 Score=14.02 Aligned_cols=143 Identities=20% Similarity=0.148 Sum_probs=73.3
Q ss_pred CCEEEECCC-CCCEEEECHHHHHHHHHHCCCCEEE-EEHHH-C--------------------CCCCCHHHHHHHHHHHH
Q ss_conf 310210144-5415871299999998732897799-60121-3--------------------32211589999999889
Q gi|254780178|r 111 QGVRFRSHI-DGSLYRVSPEESVHIQNLLGSDIQM-QLDEC-L--------------------ALPAEDKELKRAMELSL 167 (378)
Q Consensus 111 ~Gv~f~s~~-dG~~~~ltpe~~i~~q~~lg~DI~~-~LD~~-~--------------------~~~~~~k~~~~sv~rT~ 167 (378)
-|.+|.|.. -|+-++=+++...+..++-|++|+. ++-.. . |-.++-..++ ..-||.
T Consensus 79 ~G~~f~SRL~~GTgky~s~~~~~~ai~aSgaeivTVAlRR~~~~~~~~~~~l~~i~~~~~~~LPNTAGc~ta~-eAvr~a 157 (327)
T PRK11840 79 AGKTFSSRLLVGTGKYKDFEETAAAVEASGAEIVTVAVRRVNVSDPGAPMLTDYIDPKKYTYLPNTAGCFTAE-DAVRTL 157 (327)
T ss_pred CCEEEEEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCHHHHHCCCCCCEECCCCCCCCCHH-HHHHHH
T ss_conf 9988880178765899999999999998589769999974237888960577641802777998565778899-999999
Q ss_pred HHHHHHHHHH-----CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH--------------------------HHHH
Q ss_conf 9999998851-----35888605540234443668999988764222346--------------------------7664
Q gi|254780178|r 168 RWAERSLVAF-----GNQPGKALFGIVQGGDNINLRSFSAERLKELDLKG--------------------------YAIG 216 (378)
Q Consensus 168 ~w~~~~~~~~-----~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G--------------------------~aIg 216 (378)
+-+++..... .-.+...|++= .-.-.+.++.+.+.+|.- =.||
T Consensus 158 ~lARe~~~t~~iKLEVi~D~~tL~Pd------~~etl~Aae~Lv~eGF~VlpY~~dDpv~akrLed~Gc~avMPlgsPIG 231 (327)
T PRK11840 158 RLAREAGGWDLVKLEVLGDQKTLYPD------MVETLKAAEVLVKEGFQVMVYCSDDPIAAKRLEDAGAVAVMPLGAPIG 231 (327)
T ss_pred HHHHHHCCCCEEEEEEECCCCCCCCC------HHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 99998559985899980797667998------589999999999789889887169868999998759838862245234
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEE
Q ss_conf 135675167899899989850770331002-54101899999985389836
Q gi|254780178|r 217 GLAVGEPQEVMLHILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMF 266 (378)
Q Consensus 217 Gl~~ge~~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlF 266 (378)
. ..|-......+++- +.. +.|..+ -|+|.|.+-..+.++|+|-.
T Consensus 232 S-g~Gi~n~~~i~~i~---e~~--~vpvivDAGiG~pS~A~~aMElG~daV 276 (327)
T PRK11840 232 S-GLGIQNPYTIRLIV---EGA--KVPVLVDAGVGTASDAAVAMELGCDGV 276 (327)
T ss_pred C-CCCCCCHHHHHHHH---HHC--CCCEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf 7-88868999999999---736--997899579898789999986366666
No 139
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=27.07 E-value=44 Score=14.00 Aligned_cols=111 Identities=21% Similarity=0.280 Sum_probs=52.2
Q ss_pred HHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99873289779960121332211589999999889999999885135888605540234443668999988764222346
Q gi|254780178|r 133 HIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKELDLKG 212 (378)
Q Consensus 133 ~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G 212 (378)
+..-.-|.|+++ +|. ....+ +.+..+.+|.++ .+.+ -. +|-|..-. .+-+++|.+.+.|+
T Consensus 100 ~~l~~ag~d~i~-IDv--AhG~~-----~~~~~~ik~ir~---~~p~--~~----IiaGNV~T---~e~a~~L~~~GaD~ 159 (325)
T cd00381 100 EALVEAGVDVIV-IDS--AHGHS-----VYVIEMIKFIKK---KYPN--VD----VIAGNVVT---AEAARDLIDAGADG 159 (325)
T ss_pred HHHHHCCCCEEE-EEC--HHCCC-----HHHHHHHHHHHH---HCCC--CC----EEECCCCC---HHHHHHHHHCCCCE
T ss_conf 999976998999-870--00345-----889999999997---6899--75----68645668---99999998669989
Q ss_pred HHH--HCCC---------CCCCHHHHHHHHHHHHHC-CCHHHHEECC-CCHHHHHHHHHHHCCCCEE
Q ss_conf 766--4135---------675167899899989850-7703310025-4101899999985389836
Q gi|254780178|r 213 YAI--GGLA---------VGEPQEVMLHILSNVLPI-LPVERPHYLM-GVGTPDDILKSVSYGVDMF 266 (378)
Q Consensus 213 ~aI--gGl~---------~ge~~~~~~~ii~~~~~~-LP~~kPr~l~-G~G~P~~i~~~v~~GvDlF 266 (378)
.-+ |+=+ +|-|+ +. .|..+... -..+.|.-.- |+-+|-||..|.+.|.|..
T Consensus 160 vkVGiG~GS~CtTr~~tGvG~Pq--~s-ai~~~a~~~~~~~v~iiaDGGi~~~Gdi~KAla~GAd~V 223 (325)
T cd00381 160 VKVGIGPGSICTTRIVTGVGVPQ--AT-AVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAV 223 (325)
T ss_pred EEECCCCCCCCCCCCCCCCCCCH--HH-HHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHCCCCEE
T ss_conf 99757577776660101788745--88-999999976344985894487331078888875288789
No 140
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=26.33 E-value=38 Score=14.39 Aligned_cols=23 Identities=17% Similarity=0.094 Sum_probs=14.3
Q ss_pred EEEECHHHHHHHHHHCCCCEEEE
Q ss_conf 58712999999987328977996
Q gi|254780178|r 123 LYRVSPEESVHIQNLLGSDIQMQ 145 (378)
Q Consensus 123 ~~~ltpe~~i~~q~~lg~DI~~~ 145 (378)
.+....+-..++...-.+|++|.
T Consensus 73 ~v~~G~~~l~e~a~~~~~d~Vm~ 95 (385)
T COG0743 73 EVLVGEEGLCELAAEDDADVVMN 95 (385)
T ss_pred EEEECHHHHHHHHHCCCCCEEEE
T ss_conf 58643778999984677787742
No 141
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=26.21 E-value=45 Score=13.90 Aligned_cols=120 Identities=13% Similarity=0.070 Sum_probs=69.0
Q ss_pred EECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 71299999998732897799601213322115899999998899999998851358886055402344436689999887
Q gi|254780178|r 125 RVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAER 204 (378)
Q Consensus 125 ~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~ 204 (378)
....+..++-....|.|=.+.-|-+. |....|...|.+. . ..--.|.++ ...+.|.+.+-.
T Consensus 105 ~yG~e~F~~~~~~~GvdGlIipDLP~-------------eE~~~~~~~~~~~-g-l~~I~lvaP----tt~~~Ri~~i~~ 165 (263)
T CHL00200 105 HYGINKFIKKISQAGVKGLIIPDLPY-------------EESDYLISVCNLY-N-IELILLIAP----TSSKSRIQKIAR 165 (263)
T ss_pred HCCHHHHHHHHHHCCCCEEECCCCCH-------------HHHHHHHHHHHHC-C-CCEEEEECC----CCCHHHHHHHHH
T ss_conf 73889999999984998687479997-------------8889999999855-8-621666478----996999999997
Q ss_pred HHHHHHHHHHHHCCCC-CC---CHHHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEEE
Q ss_conf 6422234676641356-75---167899899989850770331002-541018999999853898366
Q gi|254780178|r 205 LKELDLKGYAIGGLAV-GE---PQEVMLHILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMFD 267 (378)
Q Consensus 205 l~~~~~~G~aIgGl~~-ge---~~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlFD 267 (378)
.+ .+ +-|.+.-.++ |. ..+...+.+..+.... ++|..+ ||+.+|+++-.....|.|-.-
T Consensus 166 ~a-~G-FiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~t--~~Pv~vGFGIs~~e~v~~~~~~~aDGvI 229 (263)
T CHL00200 166 AA-PG-CIYLVSTTGVTGLKTELDKKLKKLIETIKKMT--NKPIILGFGISTSEQIKQIKGWNINGIV 229 (263)
T ss_pred HC-CC-CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 28-98-08985336556875445187999999999736--9984873587999999999745999999
No 142
>pfam04777 Evr1_Alr Erv1 / Alr family. Biogenesis of Fe/S clusters involves a number of essential mitochondrial proteins. Erv1p of Saccharomyces cerevisiae mitochondria is required for the maturation of Fe/S proteins in the cytosol. The ALR (augmenter of liver regeneration) represents a mammalian orthologue of yeast Erv1p. Both Erv1p and full-length ALR are located in the mitochondrial intermembrane an d it thought to operate downstream of the mitochondrial ABC transporter.
Probab=26.17 E-value=26 Score=15.48 Aligned_cols=33 Identities=12% Similarity=0.105 Sum_probs=22.0
Q ss_pred CCCHHHCCCCHHHHHHH---HHCCCHHHHHHHHHHH
Q ss_conf 69813368898999886---8578508999999999
Q gi|254780178|r 305 SHCSALRDYSRAYLHHL---LRVNESLAGMILSWAN 337 (378)
Q Consensus 305 C~C~~C~~ytraYl~HL---~~~~E~l~~~Ll~iHN 337 (378)
-.|..|+.|-..|+... +++++.+..=|..+||
T Consensus 37 lPC~~C~~h~~~~l~~~~~~~~sr~~l~~wl~~~HN 72 (95)
T pfam04777 37 YPCEECAEHFQKILAKNPPQVSSRDDLSLWLCEAHN 72 (95)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 486999999999998781427999999999999999
No 143
>KOG1057 consensus
Probab=26.07 E-value=45 Score=13.93 Aligned_cols=102 Identities=20% Similarity=0.257 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHHHCCCCEEEECCEE----------ECCCCC--CCCCCCCCHHHHHHHHCC-------------------
Q ss_conf 4101899999985389836620000----------023320--024562100210123223-------------------
Q gi|254780178|r 248 GVGTPDDILKSVSYGVDMFDCVMPT----------RAGRHG--LAFTRFGKINLRNARHID------------------- 296 (378)
Q Consensus 248 G~G~P~~i~~~v~~GvDlFD~~~pt----------r~Ar~G--~~~t~~g~i~l~~~~~~~------------------- 296 (378)
|.-+|.-=..|-+||= .|-|.||- ..-||. ++-++.|++.++.+.|+.
T Consensus 510 GelT~agr~QAeeLGr-~FR~~~~gg~g~gllrLhst~rhDlKIYaSdEgRVqmtAaaFAkgLL~lEgelTpiLvqmVkk 588 (1018)
T KOG1057 510 GELTHAGRYQAEELGR-QFRCDYPGGQGLGLLRLHSTYRHDLKIYASDEGRVQMTAAAFAKGLLALEGELTPILVQMVKK 588 (1018)
T ss_pred CEECCHHHHHHHHHHH-HHHHCCCCCCCCCEEEEHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 7726235765999999-997418887774201001445324126854750678889999989986016776899999873
Q ss_pred CCCCCCCCCCCHHHCCCCHHHHHHHHHCCCHH----HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68855986698133688989998868578508----9999999999999999999999
Q gi|254780178|r 297 DMRPLDAESHCSALRDYSRAYLHHLLRVNESL----AGMILSWANLAYYQDLMKEIRS 350 (378)
Q Consensus 297 d~~pi~~~C~C~~C~~ytraYl~HL~~~~E~l----~~~Ll~iHNl~~~~~~~~~iR~ 350 (378)
|.+-||..|+-..|..--+|+||+++++.... .|..++=++...+.+.++.+|.
T Consensus 589 dn~LLD~~~~as~~m~~vK~~L~~ilq~~~~~~~e~~~~~~~P~~~~~l~~~ve~vk~ 646 (1018)
T KOG1057 589 DNTLLDDDNAASSYMDKVKARLHEILQAGREFTPEFDWPELMPNPSEVLTQVVELVKN 646 (1018)
T ss_pred CCHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHH
T ss_conf 1010057630689999999999999866876787666010199676899999999870
No 144
>PRK04053 rps13p 30S ribosomal protein S13P; Reviewed
Probab=25.94 E-value=46 Score=13.86 Aligned_cols=19 Identities=21% Similarity=0.403 Sum_probs=6.8
Q ss_pred CCCCHHHHHHHHHHHCCCC
Q ss_conf 2541018999999853898
Q gi|254780178|r 246 LMGVGTPDDILKSVSYGVD 264 (378)
Q Consensus 246 l~G~G~P~~i~~~v~~GvD 264 (378)
+.|+|.-.-...|-.+|||
T Consensus 30 IyGIG~~~A~~Ic~~lgId 48 (149)
T PRK04053 30 IKGIGRRTARAIARKLGLD 48 (149)
T ss_pred CCCCCHHHHHHHHHHHCCC
T ss_conf 1484899999999991899
No 145
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; InterPro: IPR011772 This entry respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions . This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This entry identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologues of this gene are not found in plants which rely solely on the aerobic cyclase.; GO: 0016709 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen NADH or NADPH as one donor and incorporation of one atom of oxygen, 0050661 NADP binding, 0015995 chlorophyll biosynthetic process.
Probab=25.84 E-value=46 Score=13.85 Aligned_cols=111 Identities=18% Similarity=0.152 Sum_probs=62.4
Q ss_pred CCCCCEEEECHHHHHHHHHHCCCCEEEE-EHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHH
Q ss_conf 4454158712999999987328977996-012133221158999999988999999988513588860554023444366
Q gi|254780178|r 118 HIDGSLYRVSPEESVHIQNLLGSDIQMQ-LDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNIN 196 (378)
Q Consensus 118 ~~dG~~~~ltpe~~i~~q~~lg~DI~~~-LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~d 196 (378)
-+|...-.||-|+..+.....+|||+++ -.--||.. --+++|.+.+.+ ..+|. -+|-||+++-
T Consensus 43 f~DA~~~~l~de~l~e~lr~~~Pd~v~~GhtaiTp~~-------y~a~~~lk~~rE------~lPN~---~~vlGGihpT 106 (506)
T TIGR02026 43 FLDAMTDPLTDEKLVERLRAHRPDLVLIGHTAITPAI-------YIAEETLKVARE------RLPNA---IIVLGGIHPT 106 (506)
T ss_pred EEECCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCH-------HHHHHHHHHHHH------HCCHH---HHHHCCCCCC
T ss_conf 7622368887489999997259868997265554201-------899999999986------24435---5342464642
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCCH
Q ss_conf 899998876422234676641356751678998999898507703310025410
Q gi|254780178|r 197 LRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGVG 250 (378)
Q Consensus 197 LR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~G 250 (378)
--=. +-|.+-|- |+=..=||-.+...+++.+.-..=-.+--+-+-|+.
T Consensus 107 f~f~--~vLt~~Pw----ID~IVRGEGEe~~v~L~~A~e~~n~~~dr~kv~GiA 154 (506)
T TIGR02026 107 FMFR--QVLTEAPW----IDFIVRGEGEEVVVKLIKALENDNDARDRNKVKGIA 154 (506)
T ss_pred CCHH--HHHCCCCC----EEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHCEEE
T ss_conf 0212--34122882----107982773899999999985367234354503137
No 146
>TIGR03152 cyto_c552_HCOOH formate-dependent cytochrome c nitrite reductase, c552 subunit. Members of this protein family are cytochrome c552, a component of cytochrome c nitrite reductase, which is known more formally as nitrite reductase (cytochrome; ammonia-forming) (EC 1.7.2.2). Nitrate can be reduced by several enzymes. EC 1.7.2.2 reduces nitrite all the way to ammonia, rather than to ammonium hydroxide (nitrite reductase (NAD(P)H), EC 1.7.1.4) or nitric oxide (nitrite reductase (NO-forming), EC 1.7.2.1). Some examples of EC 1.7.2.2 occur in a seven gene system that enables formate-dependent nitrite reduction, but is also found in simpler contexts. Members of this protein family, however, belong to the formate-dependent system.
Probab=25.84 E-value=46 Score=13.85 Aligned_cols=98 Identities=16% Similarity=0.151 Sum_probs=54.2
Q ss_pred HHCCCCEEEECCEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCC-CCCCHHHCCCCHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 853898366200000233200245621002101232236885598-6698133688989998868578508999999999
Q gi|254780178|r 259 VSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDA-ESHCSALRDYSRAYLHHLLRVNESLAGMILSWAN 337 (378)
Q Consensus 259 v~~GvDlFD~~~ptr~Ar~G~~~t~~g~i~l~~~~~~~d~~pi~~-~C~C~~C~~ytraYl~HL~~~~E~l~~~Ll~iHN 337 (378)
-..||-=-||-+|+.....|..+|+.... +||+. .=.|-+|-+-|..+|+--....----..++..-
T Consensus 239 ~~~GVsCaDCHMPy~~~~~gk~yTdH~v~-----------SPL~~~~~aC~~CH~~s~e~L~~~V~~~q~~~~~~~~~a- 306 (439)
T TIGR03152 239 GKNNVTCIDCHMPKVQNKDGKVYTDHKVG-----------NPFDRFEDTCANCHTQSKATLQKVVAERKAQVLEMKLKL- 306 (439)
T ss_pred HHCCCCCCCCCCCCEECCCCCEECCCCCC-----------CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf 42798611049941477998363676367-----------801547889876068889999999999999999999999-
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 9999999999999998599899999999985
Q gi|254780178|r 338 LAYYQDLMKEIRSAIAEDCFVDFAMQTQENW 368 (378)
Q Consensus 338 l~~~~~~~~~iR~aI~~g~f~~~~~~~~~~~ 368 (378)
-..+.....+++.+..+|.-++-.++.+...
T Consensus 307 ~~~lv~ah~ea~~a~~aga~~~em~~~l~~~ 337 (439)
T TIGR03152 307 EDQIVKAHFEAKAAWDAGATEAEMKPILQDI 337 (439)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 9999999999999997699999999999999
No 147
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=25.80 E-value=46 Score=13.85 Aligned_cols=36 Identities=17% Similarity=0.220 Sum_probs=22.1
Q ss_pred HHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCE
Q ss_conf 98999898507703310025410189999998538983
Q gi|254780178|r 228 LHILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDM 265 (378)
Q Consensus 228 ~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDl 265 (378)
++-|.+..+.- +.|..+-|+-+|+|-..|++.|+|-
T Consensus 225 W~di~wlr~~w--~~plilKGI~~~eDA~~A~~~G~dg 260 (361)
T cd04736 225 WQDLRWLRDLW--PHKLLVKGIVTAEDAKRCIELGADG 260 (361)
T ss_pred HHHHHHHHHHC--CCCEEEECCCCHHHHHHHHHCCCCE
T ss_conf 99999999866--9974552148999999998769999
No 148
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase; InterPro: IPR010107 This entry represents Glutamate decarboxylase (gad;) it is a pyridoxal 5'-phosphate (PLP)-dependent enzyme, which catalyses the irreversible alpha-decarboxylation of L-glutamate to gamma-aminobutyrate (GABA). This enzyme is widely distributed amongst eukaryotes and prokaryotes, but its function varies in different organisms . Gad has a crucial role in the vertebrate central nervous system where it is responsible for the synthesis of GABA, the major inhibitory neurotransmitter. In the majority of vertebrates Gad occurs in two isoforms, GAD65 and GAD67, both active at neutral pH . Gad isoforms (GadA and GadB) have also been reported in some bacterial species, including the Gram-negative bacterium and Gram-positive bacterium . A unique feature of plant and yeast Gad is the presence of a calmodulin (CaM)-binding domain in the C-terminal region. In Saccharomyces cerevisiae, Gad expression is required for normal oxidative stress tolerance . In plants, Gad is thought to be a stress-adapter chaperonin sensing Ca2+ signals.; GO: 0004351 glutamate decarboxylase activity, 0030170 pyridoxal phosphate binding, 0006536 glutamate metabolic process.
Probab=25.72 E-value=46 Score=13.84 Aligned_cols=176 Identities=22% Similarity=0.276 Sum_probs=96.8
Q ss_pred CCEEECCCCCCCCCCCHHHHHH------CCCCEEEEEHHHHHHCC---CHHHHHHCCCCH-HHCCCCCCEEEC--CCCCC
Q ss_conf 8574106868568868899986------09989993226657387---689986527420-110157722411--45432
Q gi|254780178|r 31 PAFMPVGTAGTVKAMYFDQVRD------LGADVILGNAYHLMLRP---GAERIARLGGLH-KFIRWFKPILTD--SGGFQ 98 (378)
Q Consensus 31 P~flpv~t~g~v~~lt~~~l~~------~g~~~il~Ntyhl~~~p---g~~~i~~~gGlh-~fl~~~~~ilTD--SGgfQ 98 (378)
+=++|+..|+-. .|+|+++-+ +|+-.||+.||-=-..| -.+.+.+..-=+ .+-+|+=||=-| ||||=
T Consensus 177 ~R~VP~~~r~r~-~i~Pe~~~~~vDENTIGV~~ILG~TyTG~yE~v~~lnD~L~~~~~~~PDWsg~d~PiHvDAASGGFi 255 (493)
T TIGR01788 177 LREVPMDKRDRY-VIDPEEVVDLVDENTIGVVAILGTTYTGEYEDVKALNDLLEELNAKTPDWSGWDIPIHVDAASGGFI 255 (493)
T ss_pred EEEEECCCCCCC-CCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCC
T ss_conf 136720777760-1188999986076752488874723258708889999999997427887477876647744678811
Q ss_pred CCH------------------HHHCCCCCCCCEEE-ECCCCCCEEEE-----CHHHHHHHHHHCCCCEEE-EEHH-----
Q ss_conf 101------------------22102233331021-01445415871-----299999998732897799-6012-----
Q gi|254780178|r 99 VMS------------------LSKLCSIDEQGVRF-RSHIDGSLYRV-----SPEESVHIQNLLGSDIQM-QLDE----- 148 (378)
Q Consensus 99 v~s------------------l~~~~~~~~~Gv~f-~s~~dG~~~~l-----tpe~~i~~q~~lg~DI~~-~LD~----- 148 (378)
+.= |..+.+|+-.|..| -.+.+=+.+.+ =||+-|=-..-||.|+-. .|.-
T Consensus 256 ~PFGfekehmk~~PDl~WDFRLprV~SINvSGHKYGLvYPGvGWViWRd~e~LPeELiF~vnYLGg~~~tFtLNFSrp~~ 335 (493)
T TIGR01788 256 APFGFEKEHMKVEPDLEWDFRLPRVKSINVSGHKYGLVYPGVGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPAN 335 (493)
T ss_pred CCCCCCCCCEEECCCEEECCCCCCEEEECCCCCCCCCCCCCCCEEEECCCCCCHHHCEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 37663534115457126566178246870465512464766126887581137013111011026656543013557623
Q ss_pred --------HCCC-CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC-CC--CCCHHHHHHHHHHHHHHH
Q ss_conf --------1332-2115899999998899999998851358886055402-34--443668999988764222
Q gi|254780178|r 149 --------CLAL-PAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIV-QG--GDNINLRSFSAERLKELD 209 (378)
Q Consensus 149 --------~~~~-~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiV-qG--G~~~dLR~~Sa~~l~~~~ 209 (378)
...+ ..++..+.+....|.+|+...++...+.++. |=+| +| ...-|---+|.+..=+.|
T Consensus 336 qViaQYYnFlRLG~~GYr~i~q~~~~vA~~La~~~~~~sklPG~--Fe~~s~g~~sienDsaPksvkDYWehP 406 (493)
T TIGR01788 336 QVIAQYYNFLRLGREGYRKIMQNLLDVAQYLAEEIAKLSKLPGP--FEILSDGRESIENDSAPKSVKDYWEHP 406 (493)
T ss_pred CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--EEEEECCCCCCCCCCCCCCHHHHHCCC
T ss_conf 11364466885040134899998999999999999986069984--588717875433456774012331364
No 149
>TIGR01125 TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125; InterPro: IPR005840 This is a family of mainly hypothetical proteins of unknown function. .
Probab=25.58 E-value=46 Score=13.82 Aligned_cols=18 Identities=11% Similarity=0.154 Sum_probs=9.4
Q ss_pred CCCCCCHHHHHHHHHHHH
Q ss_conf 332211589999999889
Q gi|254780178|r 150 LALPAEDKELKRAMELSL 167 (378)
Q Consensus 150 ~~~~~~~k~~~~sv~rT~ 167 (378)
+|......++-|.|.||.
T Consensus 289 iPLQH~sd~ILK~M~R~~ 306 (475)
T TIGR01125 289 IPLQHASDRILKLMRRPG 306 (475)
T ss_pred CCCCCCCHHHHHCCCCCC
T ss_conf 431238737874278996
No 150
>PRK06267 hypothetical protein; Provisional
Probab=25.25 E-value=47 Score=13.78 Aligned_cols=51 Identities=20% Similarity=0.254 Sum_probs=27.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHH---HHHHHCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 0554023444366899998876422234---67664135675167899899989850
Q gi|254780178|r 184 ALFGIVQGGDNINLRSFSAERLKELDLK---GYAIGGLAVGEPQEVMLHILSNVLPI 237 (378)
Q Consensus 184 ~lfgiVqGG~~~dLR~~Sa~~l~~~~~~---G~aIgGl~~ge~~~~~~~ii~~~~~~ 237 (378)
.+|.-|.-+...+-|.++.+.+.+.++. |+. +++||+.+.+.+.+....++
T Consensus 141 ~ly~~i~p~~s~e~Ri~~l~~lk~~G~e~gsG~i---vGlGET~ed~~~~~~~lkel 194 (324)
T PRK06267 141 KLHEELCPGKPLDKIKEMLKKAKDLGLKTGITII---LGLGETEDDIELLLNLIEEL 194 (324)
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE---EECCCCHHHHHHHHHHHHHC
T ss_conf 8870279999889999999999983983200468---73798899999999999976
No 151
>cd00517 ATPS ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be a monomer, a hom
Probab=24.48 E-value=49 Score=13.69 Aligned_cols=105 Identities=20% Similarity=0.183 Sum_probs=59.8
Q ss_pred CCCHHHCCCCCCEEECCCCCCCCHHHHCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHH
Q ss_conf 74201101577224114543210122102233331021014454158712999999987328977996012133221158
Q gi|254780178|r 78 GGLHKFIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDK 157 (378)
Q Consensus 78 gGlh~fl~~~~~ilTDSGgfQv~sl~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k 157 (378)
.|+.+|++. |..+ -+|-+.+..... +.|=....+||++.-+..+..|-+-++++----|.+...+
T Consensus 109 Pgv~~~~~~-g~~~-vgG~i~~~~~~~-------------~~~f~~~~~tP~e~r~~~~~~gw~~VvaFqTRNp~HraHe 173 (356)
T cd00517 109 PGVKMVLES-GDFL-VGGKLEVLERPK-------------FNGFDQYRLTPAELREEFKEKGWDTVVAFQTRNPMHRAHE 173 (356)
T ss_pred HHHHHHHHC-CCEE-ECCEEEEECCCC-------------CCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHHH
T ss_conf 068999725-9969-814379943666-------------5667000379999999998568865888731899974799
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCEEE-EEC----CCCCCHHHHHHHHHHHHHH
Q ss_conf 99999998899999998851358886055-402----3444366899998876422
Q gi|254780178|r 158 ELKRAMELSLRWAERSLVAFGNQPGKALF-GIV----QGGDNINLRSFSAERLKEL 208 (378)
Q Consensus 158 ~~~~sv~rT~~w~~~~~~~~~~~~~~~lf-giV----qGG~~~dLR~~Sa~~l~~~ 208 (378)
++. ++|.+ ..... ...|. ++| .|....+.|.+|-+.+.+.
T Consensus 174 ~l~-------~~Ale---~~~~~-~~lli~P~vG~~k~gD~~~~~r~~~y~~l~~~ 218 (356)
T cd00517 174 ELM-------KRALE---RLLEN-DGLLLHPLVGWTKPGDVPDEVRMRAYEALLEE 218 (356)
T ss_pred HHH-------HHHHH---HHCCC-CEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 999-------99999---71438-71899733367888898989999999999970
No 152
>pfam11876 DUF3396 Protein of unknown function (DUF3396). This family of proteins are functionally uncharacterized. This protein is found in bacteria and viruses. Proteins in this family are typically between 302 to 382 amino acids in length.
Probab=24.36 E-value=49 Score=13.67 Aligned_cols=21 Identities=24% Similarity=0.205 Sum_probs=11.7
Q ss_pred EECHHHHHHHHHHCCCCEEEE
Q ss_conf 712999999987328977996
Q gi|254780178|r 125 RVSPEESVHIQNLLGSDIQMQ 145 (378)
Q Consensus 125 ~ltpe~~i~~q~~lg~DI~~~ 145 (378)
.-.|.+|--.|+-.|-||.-+
T Consensus 72 ~~~~~Ey~la~r~pGlDV~~~ 92 (208)
T pfam11876 72 PNEPSEYFLAQRYPGLDVGDP 92 (208)
T ss_pred CCCHHHHHHHHHCCCCCCCCC
T ss_conf 565899999987779877984
No 153
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; InterPro: IPR006276 This group represents cobalamin-independent methionine synthase. A family of uncharacterised archaeal proteins having substantial homology to the C-terminal region of this family, are not included in this group, though they are contained in a larger family of vitamin-B12 independent methionine synthase.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process.
Probab=24.24 E-value=49 Score=13.66 Aligned_cols=14 Identities=36% Similarity=0.586 Sum_probs=5.1
Q ss_pred CCCCEEEEEHHHHH
Q ss_conf 09989993226657
Q gi|254780178|r 53 LGADVILGNAYHLM 66 (378)
Q Consensus 53 ~g~~~il~Ntyhl~ 66 (378)
.|.+.|=+|.|-+|
T Consensus 47 ~G~D~iP~nDFs~Y 60 (778)
T TIGR01371 47 AGVDFIPSNDFSLY 60 (778)
T ss_pred CCCCEEECCCHHHH
T ss_conf 09827733612366
No 154
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=24.23 E-value=49 Score=13.65 Aligned_cols=43 Identities=16% Similarity=0.292 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEEE
Q ss_conf 7899899989850770331002-541018999999853898366
Q gi|254780178|r 225 EVMLHILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMFD 267 (378)
Q Consensus 225 ~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlFD 267 (378)
..-.+.|..+...++.+.|..= =|+.+++|.++.+..|.|+.-
T Consensus 227 ~~al~~v~~~~~~~~~~i~Iig~GGI~~~~da~e~i~aGA~~Vq 270 (289)
T cd02810 227 PLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQ 270 (289)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCHHH
T ss_conf 89999999999974999609998993999999999984997999
No 155
>pfam05853 DUF849 Prokaryotic protein of unknown function (DUF849). This family consists of several hypothetical prokaryotic proteins with no known function.
Probab=24.02 E-value=50 Score=13.63 Aligned_cols=132 Identities=17% Similarity=0.158 Sum_probs=61.3
Q ss_pred EECHHHHHHHHHHCCCCEEEEEHHHC-CCCCCHHHHHHHHHHHHHHHHHHHHHH---CCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 71299999998732897799601213-322115899999998899999998851---35888605540234443668999
Q gi|254780178|r 125 RVSPEESVHIQNLLGSDIQMQLDECL-ALPAEDKELKRAMELSLRWAERSLVAF---GNQPGKALFGIVQGGDNINLRSF 200 (378)
Q Consensus 125 ~ltpe~~i~~q~~lg~DI~~~LD~~~-~~~~~~k~~~~sv~rT~~w~~~~~~~~---~~~~~~~lfgiVqGG~~~dLR~~ 200 (378)
..++|+=++....++||++. ||-.+ ...... -......|..++.++.+.. .-.+.-.+|-+ | .-.-++..
T Consensus 87 ~~~~eeR~~~v~~~~Pd~aS-l~~gs~nf~~~~--~d~v~~n~~~~~~~~~~~~~~~gi~pe~e~yd~--g-~l~~~~~l 160 (274)
T pfam05853 87 GMTVEERLAPVEALRPEMAS-LNMGSMNFGLYS--RDMVFPNTPADVEEFAARMQEAGVKPEFECFDV--G-HLRNAARL 160 (274)
T ss_pred CCCHHHHHHHHHHCCCCEEE-ECCCCCCCCCCC--CCCEECCCHHHHHHHHHHHHHCCCCEEEEEECH--H-HHHHHHHH
T ss_conf 89888999999860988577-446664356567--772013999999999999998599149999779--9-99999999
Q ss_pred HHHHHHHHHH-HHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCCHH--HHHHHHHHHCCCCE
Q ss_conf 9887642223-46766413567516789989998985077033100254101--89999998538983
Q gi|254780178|r 201 SAERLKELDL-KGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGVGT--PDDILKSVSYGVDM 265 (378)
Q Consensus 201 Sa~~l~~~~~-~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~G~--P~~i~~~v~~GvDl 265 (378)
..+.+.+-+. .-|.+|- ..|-+.. .+.+...++.||++-+-.+.|+|. -.-+..++.+|-++
T Consensus 161 ~~~G~l~~p~~~~~vlG~-~~g~~~~--p~~L~~~l~~lp~~~~w~v~~~G~~~~~~~~~A~~~GGhv 225 (274)
T pfam05853 161 LKRGLLKGPLFVQFVLGV-LGGMPAD--PENLLHMLRTLPRGATWSVAGIGRNQLPLAAAAAALGGHV 225 (274)
T ss_pred HHHCCCCCCCEEEEEECC-CCCCCCC--HHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCE
T ss_conf 970888999579999626-8789999--9999999963878971899951754449999999809964
No 156
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=23.90 E-value=50 Score=13.61 Aligned_cols=30 Identities=23% Similarity=0.171 Sum_probs=15.3
Q ss_pred CCCHHHHHHHHHHHCCCCEEEECCEEECCC
Q ss_conf 541018999999853898366200000233
Q gi|254780178|r 247 MGVGTPDDILKSVSYGVDMFDCVMPTRAGR 276 (378)
Q Consensus 247 ~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar 276 (378)
.|-=++..+..-...|||.+-..++|..|+
T Consensus 233 SGgI~~~ni~~ya~~GvD~Is~g~lt~s~~ 262 (269)
T cd01568 233 SGGITLENIRAYAETGVDVISTGALTHSAP 262 (269)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECHHHCCCC
T ss_conf 899999999999975999999084005997
No 157
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=23.71 E-value=40 Score=14.26 Aligned_cols=94 Identities=16% Similarity=0.209 Sum_probs=42.3
Q ss_pred HHHHHHCCCCCCEEEEECCCCCCHHHHHHHH-----HHHHHHHHHHHHHHC-CCCCCCHHH---HHHHHHHHHH-CCCHH
Q ss_conf 9988513588860554023444366899998-----876422234676641-356751678---9989998985-07703
Q gi|254780178|r 172 RSLVAFGNQPGKALFGIVQGGDNINLRSFSA-----ERLKELDLKGYAIGG-LAVGEPQEV---MLHILSNVLP-ILPVE 241 (378)
Q Consensus 172 ~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa-----~~l~~~~~~G~aIgG-l~~ge~~~~---~~~ii~~~~~-~LP~~ 241 (378)
+|+.... ..=..++-.--||-+.+.-.... ++..+.|. +-.|. .++. +... -+|++++..- .+|.+
T Consensus 153 q~l~~~~-~~i~~i~lTASGGpF~~~~~~~l~~vt~~~al~HP~--W~MG~KIsID-SATmmNK~lEvIEA~~LF~l~~~ 228 (379)
T PRK05447 153 QCLPGEN-EGVEKIILTASGGPFRDWPLEELANVTPEQALKHPN--WSMGRKITID-SATMMNKGLEVIEAHWLFGLPYE 228 (379)
T ss_pred HHHHCCC-CCEEEEEEECCCCHHHHHHHHHHHCCCHHHHHCCCC--CCCCCCCCCH-HHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 9972675-400168995367307665799871879898813989--8788964000-58788889999999998199889
Q ss_pred HHEECCCCHHHHHHHHHHHCCCCEEEECCEEECC
Q ss_conf 3100254101899999985389836620000023
Q gi|254780178|r 242 RPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAG 275 (378)
Q Consensus 242 kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~A 275 (378)
|-..+ =||+.+++++ |..-|-+.-+..+
T Consensus 229 kI~v~---IHpqSiIHs~---V~f~DGs~~a~~~ 256 (379)
T PRK05447 229 QIEVV---IHPQSIIHSM---VEYVDGSVLAQLG 256 (379)
T ss_pred HEEEE---ECCCHHHHEE---EEECCCCCHHHCC
T ss_conf 96667---7721312135---7956974003159
No 158
>pfam01729 QRPTase_C Quinolinate phosphoribosyl transferase, C-terminal domain. Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase EC:2.4.2.19 is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide. The QA substrate is bound between the C-terminal domain of one subunit, and the N-terminal domain of the other. The C-terminal domain has a 7 beta-stranded TIM barrel-like fold.
Probab=23.53 E-value=51 Score=13.57 Aligned_cols=64 Identities=16% Similarity=0.116 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEE---CCCCHHHHHHHHHHHCCCCEEEECCEEECCC
Q ss_conf 64222346766413567516789989998985077033100---2541018999999853898366200000233
Q gi|254780178|r 205 LKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHY---LMGVGTPDDILKSVSYGVDMFDCVMPTRAGR 276 (378)
Q Consensus 205 l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~---l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar 276 (378)
..+.+++..-++.++ -+++.+.+..+ ....|+. ..|-=++..|..-.+.|||.+-..+.|..|+
T Consensus 96 a~~~~~d~I~LDn~s----pe~l~~~v~~l----~~~~~~v~iEaSGgI~~~ni~~yA~tGvD~IS~galt~sa~ 162 (169)
T pfam01729 96 ALEAGADIIMLDNFS----PEEVREAVEEL----DERAGRVLLEVSGGITLDNVLEYAKTGVDVISVGALTHSVP 162 (169)
T ss_pred HHHCCCCEEEECCCC----HHHHHHHHHHH----HHHCCCEEEEECCCCCHHHHHHHHHCCCCEEECCHHHCCCC
T ss_conf 984699899977999----99999999999----97589679996189999999999976999998586446997
No 159
>PRK07107 inositol-5-monophosphate dehydrogenase; Validated
Probab=23.46 E-value=51 Score=13.56 Aligned_cols=83 Identities=14% Similarity=0.032 Sum_probs=51.1
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHHHH
Q ss_conf 58886055402344436689999887642223467664135675167899899989850770331002541018999999
Q gi|254780178|r 179 NQPGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGVGTPDDILKS 258 (378)
Q Consensus 179 ~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~ 258 (378)
+..++.+.|.--|.. |.. +-++.|.+.++|-..|+- +-|.+ ..+.+.+.++....|..-+...=.+.+++....+
T Consensus 227 D~~grL~VgAAIg~~--d~~-eRa~~Lv~aGvD~lviD~-AhGhs-~~v~~~ik~ik~~~~~~~~i~aGNVaT~~~~~~L 301 (497)
T PRK07107 227 DSSKRYVVGAGINTR--DYE-ERVPALVEAGADVLCIDS-SDGYS-EWQKRTLDYIKEKYGDTVKVGAGNVVDRDGFLYL 301 (497)
T ss_pred CCCCCEEEEEECCCC--CHH-HHHHHHHHCCCCEEEECC-CCCCH-HHHHHHHHHHHHHCCCCCCCCCCCHHCHHHHHHH
T ss_conf 767888899963777--899-999999985999998034-35352-9999999999986698763414521269999999
Q ss_pred HHCCCCEE
Q ss_conf 85389836
Q gi|254780178|r 259 VSYGVDMF 266 (378)
Q Consensus 259 v~~GvDlF 266 (378)
+..|+|-+
T Consensus 302 ~~aGad~v 309 (497)
T PRK07107 302 AEAGADFV 309 (497)
T ss_pred HHCCCCEE
T ss_conf 98089868
No 160
>TIGR01464 hemE uroporphyrinogen decarboxylase; InterPro: IPR006361 This entry represents uroporphyrinogen decarboxylase (HemE), which catalyzes the fifth step in the heme biosynthetic pathway, converting uroporphyrinogen III to coproporphyrinogen III by decarboxylating the four acetate side chains of the substrate . This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products. This activity is essential in all organisms, and subnormal activity of URO-D leads to the most common form of porphyria in humans, porphyria cutanea tarda (PCT).; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin biosynthetic process.
Probab=23.07 E-value=52 Score=13.51 Aligned_cols=39 Identities=10% Similarity=-0.045 Sum_probs=16.2
Q ss_pred HHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 999999873289779960121332211589999999889
Q gi|254780178|r 129 EESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSL 167 (378)
Q Consensus 129 e~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~ 167 (378)
-+|+..|=.-|+|+++.||-+...=++....+=++.=+.
T Consensus 184 ~~YL~~Qv~AGA~avQiFDSWag~Ls~~df~~fv~py~~ 222 (351)
T TIGR01464 184 IEYLSEQVKAGAQAVQIFDSWAGALSPEDFEEFVLPYLA 222 (351)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 999999886188489996334644798788885088999
No 161
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=22.96 E-value=52 Score=13.49 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=11.4
Q ss_pred HHEECCCCHHHHHHHHHHHCCCCE
Q ss_conf 310025410189999998538983
Q gi|254780178|r 242 RPHYLMGVGTPDDILKSVSYGVDM 265 (378)
Q Consensus 242 kPr~l~G~G~P~~i~~~v~~GvDl 265 (378)
.|..+-|+-+|+|-..|++.|+|-
T Consensus 222 lplilKGI~~~eDA~~A~~~G~dg 245 (351)
T cd04737 222 LPVIVKGIQSPEDADVAINAGADG 245 (351)
T ss_pred CCEEECCCCCHHHHHHHHHCCCCE
T ss_conf 985323667799999998749988
No 162
>cd00924 Cyt_c_Oxidase_Vb Cytochrome c oxidase subunit Vb. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Vb is one of three mammalian subunits that lacks a transmembrane region. Subunit Vb is located on the matrix side of the membrane and binds the regulatory subunit of protein kinase A. The abnormally extended conformation is stable only in the CcO assembly.
Probab=22.89 E-value=47 Score=13.79 Aligned_cols=29 Identities=28% Similarity=0.334 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHCCCCEEEECCEEECCCCCCC
Q ss_conf 0189999998538983662000002332002
Q gi|254780178|r 250 GTPDDILKSVSYGVDMFDCVMPTRAGRHGLA 280 (378)
Q Consensus 250 G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~ 280 (378)
|.=..-+.+...|+|.||-- |.+..+ |+.
T Consensus 15 GlEr~Ella~~~G~D~fd~~-~~~~~~-GTk 43 (97)
T cd00924 15 GLERKELLAKLEGIDDFDMK-PLKGPF-GTK 43 (97)
T ss_pred CHHHHHHHHHHCCCCCCCCC-CCCCCC-CCC
T ss_conf 68899999987299822366-663899-976
No 163
>pfam01680 SOR_SNZ SOR/SNZ family. Members of this family are enzymes involved in a new pathway of pyridoxine/pyridoxal 5-phosphate biosynthesis. This family was formerly known as UPF0019.
Probab=22.78 E-value=52 Score=13.47 Aligned_cols=135 Identities=16% Similarity=0.213 Sum_probs=64.9
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCH-HHHEECCCCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCC-CC
Q ss_conf 23467664135675167899899989850770-33100254101899999985389836620000023320024562-10
Q gi|254780178|r 209 DLKGYAIGGLAVGEPQEVMLHILSNVLPILPV-ERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRF-GK 286 (378)
Q Consensus 209 ~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~-~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t~~-g~ 286 (378)
|.|.-+=||++-..+-..+.+|...+. +|. .|.| +||-.+-.-+=++|||+.|-+ -.||+- ..
T Consensus 46 PadIR~~GGVaRMsdp~~I~eI~~aVs--IPVMAK~R----IGHfvEAqiLEalgVD~IDES---------EVLTpAD~~ 110 (209)
T pfam01680 46 PADIRAAGGVARMSDPKMIKEIMNAVS--IPVMAKVR----IGHFVEAQILEAIGVDYIDES---------EVLTPADEF 110 (209)
T ss_pred CHHHHHCCCEEECCCHHHHHHHHHHEE--CHHEEECC----CCHHHHHHHHHHHCCCCCCCC---------CCCCCCCHH
T ss_conf 976862589233489899999998601--01112013----431899999999588822522---------257777542
Q ss_pred HHHHHHHHCCCCCCCCCCCCCH--HHCCCCHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 0210123223688559866981--33688989998868578--5089999999999999999999999998599899999
Q gi|254780178|r 287 INLRNARHIDDMRPLDAESHCS--ALRDYSRAYLHHLLRVN--ESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAM 362 (378)
Q Consensus 287 i~l~~~~~~~d~~pi~~~C~C~--~C~~ytraYl~HL~~~~--E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~ 362 (378)
.+|+...|+ .|..++|... +.++-.- =.-+++++ --.|.+.-+..++...+..++.++. ..+..+..|.+
T Consensus 111 ~HI~K~~F~---vPFVCGarnLGEAlRRI~E--GAaMIRTKGEaGTGnVvEAVrH~R~i~~eI~~l~~-~~~~el~~~Ak 184 (209)
T pfam01680 111 FHIDKKKFT---VPFVCGARNLGEALRRIWE--GAAMIRTKGEAGTGNVVEAVRHMRLMNGEIRRLQN-MSEDELYTVAK 184 (209)
T ss_pred CCCCCCCCC---CCEEECCCCHHHHHHHHHC--CHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHH
T ss_conf 055410167---7643068873899998870--14213467878987599999999999999999976-99999999999
Q ss_pred HH
Q ss_conf 99
Q gi|254780178|r 363 QT 364 (378)
Q Consensus 363 ~~ 364 (378)
++
T Consensus 185 ~~ 186 (209)
T pfam01680 185 EL 186 (209)
T ss_pred HH
T ss_conf 87
No 164
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria.; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0016021 integral to membrane.
Probab=22.59 E-value=42 Score=14.12 Aligned_cols=33 Identities=24% Similarity=0.504 Sum_probs=26.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHH-HHHHHHHHC
Q ss_conf 554023444366899998876422-234676641
Q gi|254780178|r 185 LFGIVQGGDNINLRSFSAERLKEL-DLKGYAIGG 217 (378)
Q Consensus 185 lfgiVqGG~~~dLR~~Sa~~l~~~-~~~G~aIgG 217 (378)
|.|-+-|-+++|||..-.|.+-.. ||.-|++|.
T Consensus 179 L~G~~LGNLD~~LRd~FSk~V~~lIPFFAF~LGN 212 (314)
T TIGR00793 179 LVGFILGNLDPELRDLFSKAVQTLIPFFAFALGN 212 (314)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9998751688779999988865654578876323
No 165
>pfam00218 IGPS Indole-3-glycerol phosphate synthase.
Probab=22.47 E-value=53 Score=13.43 Aligned_cols=37 Identities=24% Similarity=0.433 Sum_probs=29.5
Q ss_pred HHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEEE
Q ss_conf 9989850770331002-541018999999853898366
Q gi|254780178|r 231 LSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMFD 267 (378)
Q Consensus 231 i~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlFD 267 (378)
.....+.+|.+....- .|+.+|.++......|+|-|=
T Consensus 199 t~~L~~~ip~~~~~VsESGI~~~~di~~l~~~G~~~~L 236 (254)
T pfam00218 199 TRRLAPMVPEDVLLVAESGISTPEDVEKLAKHGANAFL 236 (254)
T ss_pred HHHHHHHCCCCCEEEECCCCCCHHHHHHHHHCCCCEEE
T ss_conf 99999558989879983899999999999987999999
No 166
>COG3303 NrfA Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit [Inorganic ion transport and metabolism]
Probab=22.30 E-value=42 Score=14.09 Aligned_cols=67 Identities=25% Similarity=0.390 Sum_probs=44.0
Q ss_pred CHHHHHHHHH----HHCCCCEEEECCEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHHHHC
Q ss_conf 1018999999----853898366200000233200245621002101232236885598669813368898999886857
Q gi|254780178|r 249 VGTPDDILKS----VSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDAESHCSALRDYSRAYLHHLLRV 324 (378)
Q Consensus 249 ~G~P~~i~~~----v~~GvDlFD~~~ptr~Ar~G~~~t~~g~i~l~~~~~~~d~~pi~~~C~C~~C~~ytraYl~HL~~~ 324 (378)
+-||+.=+.. -..||--.||-+|.--...|..+|..- |.|. .++| .-.|--|-.-|++||+-....
T Consensus 281 aQHPe~E~ws~GvHgkNgVtCiDCHMPkVq~a~gK~yTdH~---I~nP--f~~f-----~stCanCH~Qsk~~Lq~~V~~ 350 (501)
T COG3303 281 AQHPEYETWSAGVHGKNGVTCIDCHMPKVQNAEGKLYTDHK---IGNP--FDNF-----ASTCANCHTQSKAKLQAVVAE 350 (501)
T ss_pred CCCCCHHHHHCCCCCCCCCEEEECCCCCCCCCCCCEEECCC---CCCH--HHHH-----HHHHHHHHHHHHHHHHHHHHH
T ss_conf 25862554412333568844674577101477870652133---5786--6789-----988766655349999999999
Q ss_pred C
Q ss_conf 8
Q gi|254780178|r 325 N 325 (378)
Q Consensus 325 ~ 325 (378)
.
T Consensus 351 r 351 (501)
T COG3303 351 R 351 (501)
T ss_pred H
T ss_conf 9
No 167
>PRK00719 alkanesulfonate monooxygenase; Provisional
Probab=22.01 E-value=54 Score=13.37 Aligned_cols=23 Identities=30% Similarity=0.600 Sum_probs=16.7
Q ss_pred CHHHHHHHHHH----HCCCCEEEE-CCE
Q ss_conf 10189999998----538983662-000
Q gi|254780178|r 249 VGTPDDILKSV----SYGVDMFDC-VMP 271 (378)
Q Consensus 249 ~G~P~~i~~~v----~~GvDlFD~-~~p 271 (378)
||+|++|...+ ++|||.|-- -+|
T Consensus 304 VGspeqVAd~i~~y~~~Gvd~fiLsg~p 331 (377)
T PRK00719 304 VGDPPTVAARIREYADLGIDTFILSGYP 331 (377)
T ss_pred ECCHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 5898999999999997499789973899
No 168
>PRK04180 pyridoxine biosynthesis protein; Provisional
Probab=21.84 E-value=55 Score=13.35 Aligned_cols=31 Identities=26% Similarity=0.490 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHHHHCCCC-------EEEECCEEECCCC
Q ss_conf 541018999999853898-------3662000002332
Q gi|254780178|r 247 MGVGTPDDILKSVSYGVD-------MFDCVMPTRAGRH 277 (378)
Q Consensus 247 ~G~G~P~~i~~~v~~GvD-------lFD~~~ptr~Ar~ 277 (378)
=|+.+|-|-.....+|+| +|.|.-|.+-|+.
T Consensus 212 GGiATPADAALmMqLG~dGVFVGSGIFKS~dP~~rA~A 249 (293)
T PRK04180 212 GGIATPADAALMMQLGADGVFVGSGIFKSGNPEKRAKA 249 (293)
T ss_pred CCCCCCHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHH
T ss_conf 77578056999987178746754543467998899999
No 169
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=21.67 E-value=55 Score=13.33 Aligned_cols=120 Identities=14% Similarity=0.080 Sum_probs=58.2
Q ss_pred HHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 99999998732897799601213322115899999998899999998851358886055402344436689999887642
Q gi|254780178|r 128 PEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKE 207 (378)
Q Consensus 128 pe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~ 207 (378)
++...+.....|.|++..-+.++...... ....+++++ ...+..++-.+ ......++.+ ..+
T Consensus 73 ~~~~~~~~~~~g~d~v~i~~~~~~~~~~~-------~~~~~~~~~------~~~~~~vi~~~-~~~~~~~~~~----a~~ 134 (200)
T cd04722 73 VDIAAAAARAAGADGVEIHGAVGYLARED-------LELIRELRE------AVPDVKVVVKL-SPTGELAAAA----AEE 134 (200)
T ss_pred CHHHHHHHHHCCCCEEEECCCCCCCCCCH-------HHHHHHHHH------HCCCCEEEEEC-CCCCHHHHHH----HHH
T ss_conf 75999999983999899789996543006-------899999998------44896499968-9999999999----998
Q ss_pred HHHHHHHHHCCCC-C---CCHHHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEEE
Q ss_conf 2234676641356-7---5167899899989850770331002-541018999999853898366
Q gi|254780178|r 208 LDLKGYAIGGLAV-G---EPQEVMLHILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMFD 267 (378)
Q Consensus 208 ~~~~G~aIgGl~~-g---e~~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlFD 267 (378)
.+.+.+.+.+... + +....-...+..+.. -.+.|... .|+++|+++..+.++|.|.+.
T Consensus 135 ~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ipvi~~gGi~~~~~~~~~~~~gAdgv~ 197 (200)
T cd04722 135 AGVDEVGLGNGGGGGGGRDAVPIADLLLILAKR--GSKVPVIAGGGINDPEDAAEALALGADGVI 197 (200)
T ss_pred CCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHH--HCCCCEEEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 099799970874678887666116899999998--579998997587999999999985998898
No 170
>KOG4175 consensus
Probab=21.13 E-value=56 Score=13.25 Aligned_cols=113 Identities=17% Similarity=0.160 Sum_probs=55.9
Q ss_pred ECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 12999999987328977996012133221158999999988999999988513588860554023444366899998876
Q gi|254780178|r 126 VSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERL 205 (378)
Q Consensus 126 ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l 205 (378)
..-|.+|+..+.-|..=++..|.++ + .+...-.+|.+ ..-++.+.| -..-.|.|..-.-+.
T Consensus 110 yG~e~~iq~ak~aGanGfiivDlPp------E-------Ea~~~Rne~~k-----~gislvpLv-aPsTtdeRmell~~~ 170 (268)
T KOG4175 110 YGVENYIQVAKNAGANGFIIVDLPP------E-------EAETLRNEARK-----HGISLVPLV-APSTTDERMELLVEA 170 (268)
T ss_pred HHHHHHHHHHHHCCCCCEEECCCCH------H-------HHHHHHHHHHH-----CCCEEEEEE-CCCCHHHHHHHHHHH
T ss_conf 4078999999965877458506886------8-------98999999986-----492489741-799808999999986
Q ss_pred HHHHHHHHHHHCCCCCCCHH----HHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHH
Q ss_conf 42223467664135675167----899899989850770331002-54101899999985
Q gi|254780178|r 206 KELDLKGYAIGGLAVGEPQE----VMLHILSNVLPILPVERPHYL-MGVGTPDDILKSVS 260 (378)
Q Consensus 206 ~~~~~~G~aIgGl~~ge~~~----~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~ 260 (378)
+ +-+-|.++...+-...+ ....++..+.. --.++|.-+ ||+.+|+.+-..-+
T Consensus 171 a--dsFiYvVSrmG~TG~~~svn~~l~~L~qrvrk-~t~dtPlAVGFGvst~EHf~qVgs 227 (268)
T KOG4175 171 A--DSFIYVVSRMGVTGTRESVNEKLQSLLQRVRK-ATGDTPLAVGFGVSTPEHFKQVGS 227 (268)
T ss_pred H--CCEEEEEEECCCCCCHHHHHHHHHHHHHHHHH-HCCCCCEEEEECCCCHHHHHHHHH
T ss_conf 3--25599987145666177788889999999998-648986267506687899876520
No 171
>KOG3985 consensus
Probab=21.00 E-value=31 Score=14.98 Aligned_cols=19 Identities=16% Similarity=0.324 Sum_probs=8.9
Q ss_pred HHHHHHCCCCEEEEEHHHC
Q ss_conf 9998732897799601213
Q gi|254780178|r 132 VHIQNLLGSDIQMQLDECL 150 (378)
Q Consensus 132 i~~q~~lg~DI~~~LD~~~ 150 (378)
|-..+.+|.+.++.+.-|-
T Consensus 78 iwALk~~gc~~ii~~tAcG 96 (283)
T KOG3985 78 IWALKSLGCTAIISFTACG 96 (283)
T ss_pred HHHHHHCCCCEEEEEECCC
T ss_conf 8999857974899850124
No 172
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=20.98 E-value=52 Score=13.47 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=24.5
Q ss_pred HHHEECCC--CHHHHHHHHHHHCCCCEEEECCEEECCC
Q ss_conf 33100254--1018999999853898366200000233
Q gi|254780178|r 241 ERPHYLMG--VGTPDDILKSVSYGVDMFDCVMPTRAGR 276 (378)
Q Consensus 241 ~kPr~l~G--~G~P~~i~~~v~~GvDlFD~~~ptr~Ar 276 (378)
++|.-+.| +|+|...+.++.+|+|-| |..|....+
T Consensus 662 g~~VsvCGEmAgdp~~~~lL~glG~~~l-Sm~~~~i~~ 698 (748)
T PRK11061 662 GLPVRLCGEMAGDPMGALLLIGLGYRHL-SMNGRSVAR 698 (748)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEE-EECHHHHHH
T ss_conf 9959981333569757999996699826-567877899
No 173
>KOG2833 consensus
Probab=20.82 E-value=57 Score=13.21 Aligned_cols=49 Identities=18% Similarity=0.238 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHH
Q ss_conf 88764222346766413567516789989998985077033100254101899999985
Q gi|254780178|r 202 AERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGVGTPDDILKSVS 260 (378)
Q Consensus 202 a~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~ 260 (378)
.+.+.++||.+||= -...+.+++..+.. +..|+= +|+--.++ .|+..|+
T Consensus 240 ~eaI~~rDF~~FA~---lTm~DSNqFHAvcl---DT~PPI--~YmNd~S~--~iI~~vh 288 (395)
T KOG2833 240 REAIRERDFESFAK---LTMKDSNQFHAVCL---DTFPPI--FYLNDTSW--RIISLVH 288 (395)
T ss_pred HHHHHHCCHHHHHH---HHHHCCHHHHHHHH---CCCCCE--EEECCCCH--HHHHHHH
T ss_conf 99998657788777---77613124564423---158974--78536407--9999999
No 174
>pfam00478 IMPDH IMP dehydrogenase / GMP reductase domain. This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family.
Probab=20.73 E-value=57 Score=13.20 Aligned_cols=17 Identities=29% Similarity=0.530 Sum_probs=9.8
Q ss_pred CCHHHHHHHHHHHCCCC
Q ss_conf 41018999999853898
Q gi|254780178|r 248 GVGTPDDILKSVSYGVD 264 (378)
Q Consensus 248 G~G~P~~i~~~v~~GvD 264 (378)
|+-+|=||..|++.|.|
T Consensus 334 Gi~~sGDi~KAlaaGAd 350 (467)
T pfam00478 334 GIRYSGDIAKALAAGAS 350 (467)
T ss_pred CCCCHHHHHHHHHCCCC
T ss_conf 62330489999872898
No 175
>KOG1606 consensus
Probab=20.60 E-value=37 Score=14.46 Aligned_cols=31 Identities=32% Similarity=0.506 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHHHHCCCC-------EEEECCEEECCCC
Q ss_conf 541018999999853898-------3662000002332
Q gi|254780178|r 247 MGVGTPDDILKSVSYGVD-------MFDCVMPTRAGRH 277 (378)
Q Consensus 247 ~G~G~P~~i~~~v~~GvD-------lFD~~~ptr~Ar~ 277 (378)
=|+.+|.|-.....||+| +|+|.-|.+.||.
T Consensus 216 GGvaTPADAALmMQLGCdGVFVGSgiFks~dP~k~a~a 253 (296)
T KOG1606 216 GGVATPADAALMMQLGCDGVFVGSGIFKSGDPVKRARA 253 (296)
T ss_pred CCCCCHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHH
T ss_conf 67588167999998089848865542368988999999
No 176
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=20.57 E-value=58 Score=13.18 Aligned_cols=31 Identities=32% Similarity=0.530 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHHHHCCCC-------EEEECCEEECCCC
Q ss_conf 541018999999853898-------3662000002332
Q gi|254780178|r 247 MGVGTPDDILKSVSYGVD-------MFDCVMPTRAGRH 277 (378)
Q Consensus 247 ~G~G~P~~i~~~v~~GvD-------lFD~~~ptr~Ar~ 277 (378)
=|+.+|-|-.....+|+| +|.|.-|.+-|+.
T Consensus 203 GGiATPADAALmMqLG~dGVFVGSGIFKS~dP~krA~A 240 (283)
T cd04727 203 GGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARA 240 (283)
T ss_pred CCCCCHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHH
T ss_conf 78588377999997289878877654578999999999
No 177
>PTZ00134 40S ribosomal protein S18; Provisional
Probab=20.44 E-value=58 Score=13.16 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=6.0
Q ss_pred CCCHHHHHHHHHHHCCCC
Q ss_conf 541018999999853898
Q gi|254780178|r 247 MGVGTPDDILKSVSYGVD 264 (378)
Q Consensus 247 ~G~G~P~~i~~~v~~GvD 264 (378)
.|+|...-..-|-.+|||
T Consensus 36 ~GIG~~~A~~Ic~~~gid 53 (154)
T PTZ00134 36 KGIGRRFATVVCKQAGVD 53 (154)
T ss_pred CCCCHHHHHHHHHHCCCC
T ss_conf 064899999999980989
No 178
>TIGR01718 Uridine-psphlse uridine phosphorylase; InterPro: IPR010058 This entry represents a family of bacterial and archaeal uridine phosphorylases unrelated to the mammalian enzymes of the same name. The Escherichia coli , Salmonella and Klebsiella genes have been characterised. Sequences from Clostridium, Streptomyces, Treponema, Aeropyrum and Pyrobaculum are also included in this family, but it does not include related sequences from Halobacterium, which are more distantly related and represent enzymes with a slightly different substrate specificity. Also distantly related is a clade of archaeal sequences which are related to the DeoD family of inosine phosphorylases (IPR004402 from INTERPRO) as they are to these uridine phosphorylases. This clade includes a characterised protein from Sulfolobus solfataricus which has been miss-named as a methylthioadenosine phosphorylase, but which acts on inosine and guanosine - it is unclear whether uridine has been evaluated as a substrate .; GO: 0004850 uridine phosphorylase activity, 0009166 nucleotide catabolic process, 0005737 cytoplasm.
Probab=20.41 E-value=54 Score=13.36 Aligned_cols=11 Identities=27% Similarity=0.425 Sum_probs=4.1
Q ss_pred HHHHHCCCCEE
Q ss_conf 99985389836
Q gi|254780178|r 256 LKSVSYGVDMF 266 (378)
Q Consensus 256 ~~~v~~GvDlF 266 (378)
=+++.+|+|+|
T Consensus 74 EEL~~lGa~TF 84 (248)
T TIGR01718 74 EELLYLGADTF 84 (248)
T ss_pred HHHHHHCCCEE
T ss_conf 99997340125
No 179
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=20.41 E-value=58 Score=13.15 Aligned_cols=101 Identities=14% Similarity=0.217 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCC---HH-----HHHHHHHHHHHHHHH--HHHHHCCCCCC--
Q ss_conf 1589999999889999999885135888605540234443---66-----899998876422234--67664135675--
Q gi|254780178|r 155 EDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDN---IN-----LRSFSAERLKELDLK--GYAIGGLAVGE-- 222 (378)
Q Consensus 155 ~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~---~d-----LR~~Sa~~l~~~~~~--G~aIgGl~~ge-- 222 (378)
|..-.++-+.+|.+-.+.|...--.. -.-.|.|.|..+ .+ --.+..+.+.+.++| ..+||-.+.-.
T Consensus 117 S~lp~eeNI~~Tk~vv~~Ah~~gv~V--EaElG~igG~ed~~~~~~~~yT~Peea~~Fv~~TgvD~LAvaiGt~HG~Yk~ 194 (321)
T PRK07084 117 SHLPYEENVALTKKVVEYAHQFDVTV--EGELGVLAGIEDEVSAEHHTYTQPEEVEDFVTKTGVDSLAISIGTSHGAFKF 194 (321)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCEE--EEEEECCCCCCCCCCCCCHHCCCHHHHHHHHHHHCCCEEEEECCHHCCCCCC
T ss_conf 97999999999999999972639969--9975034675667666402059999999999986998586420100367667
Q ss_pred -----CHHHHHHHHHHHHHCCCHHHHEECCCCH-HHHHHHHH
Q ss_conf -----1678998999898507703310025410-18999999
Q gi|254780178|r 223 -----PQEVMLHILSNVLPILPVERPHYLMGVG-TPDDILKS 258 (378)
Q Consensus 223 -----~~~~~~~ii~~~~~~LP~~kPr~l~G~G-~P~~i~~~ 258 (378)
.....++.+..+...+| +-|..|.|.. .|.+++..
T Consensus 195 ~~~~~~p~L~~d~L~~I~~~v~-~vPLVLHGgS~~p~~~v~~ 235 (321)
T PRK07084 195 KPGECPPPLRFDILAEIEKRIP-GFPIVLHGASSVPQELVET 235 (321)
T ss_pred CCCCCCCCCCHHHHHHHHHHCC-CCCEEEECCCCCCHHHHHH
T ss_conf 8888874436999999998577-9986852899882788777
No 180
>TIGR01762 chlorin-enz chlorinating enzymes; InterPro: IPR010092 This entry represents a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula . SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae , . CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in P. syringae ..
Probab=20.34 E-value=59 Score=13.15 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=22.3
Q ss_pred EECHHHHHHHHHHCCCCEEEEEHHHCCCCCC
Q ss_conf 7129999999873289779960121332211
Q gi|254780178|r 125 RVSPEESVHIQNLLGSDIQMQLDECLALPAE 155 (378)
Q Consensus 125 ~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~ 155 (378)
..-||.+=++.-.||||++.=-.+..|-..+
T Consensus 75 i~rp~I~hRV~SiLGpnVlCWRteffPKYPG 105 (293)
T TIGR01762 75 ISRPEIAHRVSSILGPNVLCWRTEFFPKYPG 105 (293)
T ss_pred CCCCCHHCCHHHCCCCCHHEECCCCCCCCCC
T ss_conf 1475110100101388600000257788753
No 181
>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]
Probab=20.33 E-value=58 Score=13.18 Aligned_cols=17 Identities=29% Similarity=0.540 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHCCC
Q ss_conf 87642223467664135
Q gi|254780178|r 203 ERLKELDLKGYAIGGLA 219 (378)
Q Consensus 203 ~~l~~~~~~G~aIgGl~ 219 (378)
+++..+.|||+.|-|-+
T Consensus 93 eeVk~~~FDG~IiTGAP 109 (307)
T COG1897 93 EEVKDQKFDGLIITGAP 109 (307)
T ss_pred HHHHHCCCCCEEEECCC
T ss_conf 98864546715983885
No 182
>KOG0604 consensus
Probab=20.23 E-value=46 Score=13.86 Aligned_cols=69 Identities=19% Similarity=0.209 Sum_probs=46.1
Q ss_pred EECCEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 620000023320024562100210123223688559866981336889899988685785089999999999999
Q gi|254780178|r 267 DCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDAESHCSALRDYSRAYLHHLLRVNESLAGMILSWANLAYY 341 (378)
Q Consensus 267 D~~~ptr~Ar~G~~~t~~g~i~l~~~~~~~d~~pi~~~C~C~~C~~ytraYl~HL~~~~E~l~~~Ll~iHNl~~~ 341 (378)
=|-||--|..||.++++.=+-.|++..|..-. +..+|- +.-.+--|+-|++++.....++-..-|.-|.
T Consensus 257 LCGyPPFYS~hg~aispgMk~rI~~gqy~FP~----pEWs~V--Se~aKdlIR~LLkt~PteRlTI~~~m~hpwi 325 (400)
T KOG0604 257 LCGYPPFYSNHGLAISPGMKRRIRTGQYEFPE----PEWSCV--SEAAKDLIRKLLKTEPTERLTIEEVMDHPWI 325 (400)
T ss_pred HCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC----HHHHHH--HHHHHHHHHHHHCCCCHHCEEHHHHHCCCHH
T ss_conf 51798501367865780077776506777998----046677--7999999999862890330258876448201
No 183
>COG3411 Ferredoxin [Energy production and conversion]
Probab=20.12 E-value=59 Score=13.11 Aligned_cols=40 Identities=25% Similarity=0.373 Sum_probs=28.8
Q ss_pred EEECCCCCCCCHHHHCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHH
Q ss_conf 241145432101221022333310210144541587129999999873
Q gi|254780178|r 90 ILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNL 137 (378)
Q Consensus 90 ilTDSGgfQv~sl~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~ 137 (378)
-.|+||=+-+..++...-+-.+||||+ .++|+..=++.+.
T Consensus 4 ~~t~tgCl~~C~~gPvl~vYpegvWY~--------~V~p~~a~rIv~~ 43 (64)
T COG3411 4 RVTRTGCLGVCQDGPVLVVYPEGVWYT--------RVDPEDARRIVQS 43 (64)
T ss_pred EEEECCHHHHHCCCCEEEEECCCEEEE--------CCCHHHHHHHHHH
T ss_conf 884132055655598799935874682--------1698999999999
No 184
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=20.11 E-value=22 Score=15.96 Aligned_cols=34 Identities=18% Similarity=0.419 Sum_probs=26.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH-HHHHHHHHHC
Q ss_conf 055402344436689999887642-2234676641
Q gi|254780178|r 184 ALFGIVQGGDNINLRSFSAERLKE-LDLKGYAIGG 217 (378)
Q Consensus 184 ~lfgiVqGG~~~dLR~~Sa~~l~~-~~~~G~aIgG 217 (378)
.+.|.+-|-.++|+|+.......- .+|.+|++|.
T Consensus 170 lliG~ilGNLD~~~r~fl~~~~~~lIpF~~FaLGa 204 (308)
T PRK12460 170 LVLGMILGNLDPDMRDFLTKGGPLLIPFFAFALGA 204 (308)
T ss_pred HHHHHHHHCCCHHHHHHHCCCCCEEEEHHHHHHCC
T ss_conf 99999663688899998725787352041564027
No 185
>PRK05665 amidotransferase; Provisional
Probab=20.05 E-value=59 Score=13.10 Aligned_cols=159 Identities=14% Similarity=0.217 Sum_probs=71.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCHHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHC
Q ss_conf 0554023444366899998876422234676641--35675167899899989850770331002541018999999853
Q gi|254780178|r 184 ALFGIVQGGDNINLRSFSAERLKELDLKGYAIGG--LAVGEPQEVMLHILSNVLPILPVERPHYLMGVGTPDDILKSVSY 261 (378)
Q Consensus 184 ~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgG--l~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~ 261 (378)
..|-+++|-...++ .+++||.|.| .++.++..=+.+..+++.......+| ++|+=-=++++ |-++
T Consensus 42 ~~~~v~~ge~P~~~----------~~~dg~vITGS~~~vyd~~pWi~~L~~~i~~~~~~~~p--ilGICfGHQli-A~AL 108 (240)
T PRK05665 42 VVYNVVQGDYPADD----------EKFDAYLVTGSKADSFGTDPWIQTLKTYLLKLYERGDK--LLGVCFGHQLL-ALLL 108 (240)
T ss_pred EEEEEECCCCCCCH----------HHCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCC--EEEEEHHHHHH-HHHH
T ss_conf 99970068799897----------78789999589874689967699999999999876999--89994436888-8860
Q ss_pred CCCEEEECC-------EEECCCCCCCCCCC-CCHHHHHHHHCCCCCCCCCC---------C---------CCHHHC---C
Q ss_conf 898366200-------00023320024562-10021012322368855986---------6---------981336---8
Q gi|254780178|r 262 GVDMFDCVM-------PTRAGRHGLAFTRF-GKINLRNARHIDDMRPLDAE---------S---------HCSALR---D 312 (378)
Q Consensus 262 GvDlFD~~~-------ptr~Ar~G~~~t~~-g~i~l~~~~~~~d~~pi~~~---------C---------~C~~C~---~ 312 (378)
|-.+--+.. ++.....+..+... ..+++. ..+.+...-+-++ | ..++.+ .
T Consensus 109 GG~V~~~~~Gw~vG~~~~~~~~~~~~~~~~~~~~~l~-~~H~D~V~~lP~ga~~Lass~~cp~q~~~~~~~~~~~Q~HPE 187 (240)
T PRK05665 109 GGKAERASQGWGVGIHRYQLAAHAPWMSPAVTELTLL-ISHQDQVTALPEGATVIASSDFCPNAAYHIRDQVLCFQGHPE 187 (240)
T ss_pred CCEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCEEE-EEECCEEEECCCCEEEEEECCCCCHHHEECCCCEEEEECCCC
T ss_conf 9836127997366679988758774335875640799-772242785799848998679983334262786899916968
Q ss_pred CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHH
Q ss_conf 8989998868578508999999999999999999999999859----989999999998
Q gi|254780178|r 313 YSRAYLHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAED----CFVDFAMQTQEN 367 (378)
Q Consensus 313 ytraYl~HL~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g----~f~~~~~~~~~~ 367 (378)
||+.|.+.|+....- . +=.+..+..++++.+. .+.+|..+|+++
T Consensus 188 f~~~~~~~ll~~R~~----~-------i~~~~~~~a~~sl~~~~D~~~~a~~i~~Fl~~ 235 (240)
T PRK05665 188 FVHDYSRALLDLRQE----H-------LGEEVYSKGVASLAHDHQGTLVAEWMMRFVAQ 235 (240)
T ss_pred CCHHHHHHHHHHHHH----H-------CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 799999999999776----3-------69999999999706887589999999999842
Done!