Query         gi|254780178|ref|YP_003064591.1| queuine tRNA-ribosyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 378
No_of_seqs    151 out of 1891
Neff          6.3 
Searched_HMMs 39220
Date          Mon May 23 06:24:24 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780178.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 TIGR00430 Q_tRNA_tgt queuine t 100.0       0       0 1052.6  25.9  365    7-371     1-413 (415)
  2 PRK00112 tgt queuine tRNA-ribo 100.0       0       0  969.7  32.6  365    3-367     1-366 (366)
  3 COG0343 Tgt Queuine/archaeosin 100.0       0       0  921.5  29.1  369    7-375     1-369 (372)
  4 PRK01008 queuine tRNA-ribosylt 100.0       0       0  907.4  30.1  349    4-357     2-372 (372)
  5 KOG3908 consensus              100.0       0       0  775.8  14.9  372    5-377     8-383 (396)
  6 PRK13533 7-cyano-7-deazaguanin 100.0       0       0  694.8  26.1  327    5-365     1-330 (486)
  7 PRK13534 7-cyano-7-deazaguanin 100.0       0       0  635.7  22.9  324    6-364     1-327 (630)
  8 pfam01702 TGT Queuine tRNA-rib 100.0       0       0  577.3  20.1  238  129-366     1-238 (238)
  9 TIGR00432 arcsn_tRNA_tgt archa 100.0       0       0  581.9  15.9  332    7-366     1-336 (658)
 10 TIGR00449 tgt_general tRNA-gua 100.0       0       0  538.7  21.5  364    7-370     1-372 (375)
 11 KOG3909 consensus              100.0       0       0  458.3  20.3  354    5-366     1-382 (414)
 12 COG1549 Queuine tRNA-ribosyltr  98.8 6.1E-09 1.5E-13   80.2   3.4   89  235-365    91-179 (519)
 13 PHA01745 hypothetical protein   98.2   4E-06   1E-10   61.2   6.9  167   83-286    30-200 (306)
 14 PRK12330 oxaloacetate decarbox  97.2    0.02 5.2E-07   36.4  12.3  220  129-378   100-341 (499)
 15 COG5016 Pyruvate/oxaloacetate   96.5   0.085 2.2E-06   32.2  12.8  221  113-378    90-341 (472)
 16 pfam00682 HMGL-like HMGL-like.  96.3    0.11 2.8E-06   31.4  11.0  153  127-282    68-226 (237)
 17 TIGR01108 oadA oxaloacetate de  95.6    0.09 2.3E-06   32.0   7.7  218  113-378    83-336 (616)
 18 PRK09282 pyruvate carboxylase   95.1    0.31 7.8E-06   28.5  10.3  145  111-275    87-236 (580)
 19 PRK12581 oxaloacetate decarbox  93.9    0.57 1.5E-05   26.6  10.9  133  129-275   108-244 (468)
 20 KOG2368 consensus               93.3    0.48 1.2E-05   27.2   7.0  216   26-282    29-264 (316)
 21 PRK12331 oxaloacetate decarbox  93.2    0.76 1.9E-05   25.8  10.6  133  129-275    99-235 (463)
 22 PRK12999 pyruvate carboxylase;  91.6    0.56 1.4E-05   26.7   5.6  149  110-274   617-772 (1147)
 23 PRK03170 dihydrodipicolinate s  90.2       1 2.5E-05   25.0   5.8   21  249-269   185-205 (292)
 24 cd00950 DHDPS Dihydrodipicolin  89.9     1.1 2.8E-05   24.8   5.8  119  129-270    85-205 (284)
 25 PRK05437 isopentenyl pyrophosp  89.3     1.1 2.9E-05   24.7   5.5  156  105-275   114-296 (351)
 26 pfam00701 DHDPS Dihydrodipicol  88.0     1.7 4.4E-05   23.4   5.7  119  129-271    86-207 (289)
 27 PRK08255 salicylyl-CoA 5-hydro  87.8     2.2 5.6E-05   22.7   6.2   46  226-271   608-665 (770)
 28 PRK03620 5-dehydro-4-deoxygluc  87.8     1.7 4.4E-05   23.4   5.6   18  129-146    85-102 (296)
 29 pfam01070 FMN_dh FMN-dependent  87.6     1.4 3.7E-05   23.9   5.1  130  129-275   125-259 (301)
 30 PRK05692 hydroxymethylglutaryl  87.3     2.4 6.2E-05   22.4   7.9  133  132-270    85-232 (287)
 31 TIGR03249 KdgD 5-dehydro-4-deo  87.2     2.4   6E-05   22.5   6.0   30  241-270   180-210 (296)
 32 cd00952 CHBPH_aldolase Trans-o  87.1     1.7 4.4E-05   23.4   5.3   17  130-146    94-110 (309)
 33 PRK04147 N-acetylneuraminate l  86.5     2.6 6.6E-05   22.2   6.0  116  129-270    89-208 (294)
 34 cd00951 KDGDH 5-dehydro-4-deox  85.1     2.8 7.1E-05   22.0   5.5   16  131-146    86-101 (289)
 35 cd00408 DHDPS-like Dihydrodipi  83.9     3.6 9.1E-05   21.3   5.8   22  249-270   181-202 (281)
 36 TIGR01418 PEP_synth phosphoeno  83.5    0.87 2.2E-05   25.4   2.4   73  202-274   770-870 (877)
 37 cd00954 NAL N-Acetylneuraminic  83.0     3.9 9.9E-05   21.1   5.7   34  234-270   174-207 (288)
 38 cd02811 IDI-2_FMN Isopentenyl-  81.7     4.3 0.00011   20.8   7.3  152  106-272   107-287 (326)
 39 PRK13129 consensus              78.7     5.3 0.00014   20.1   8.0  203   30-267    18-233 (267)
 40 COG1038 PycA Pyruvate carboxyl  77.2     4.3 0.00011   20.7   4.2  151  110-274   619-774 (1149)
 41 cd00953 KDG_aldolase KDG (2-ke  74.7     6.8 0.00017   19.4   5.7   29  244-272   174-202 (279)
 42 COG0329 DapA Dihydrodipicolina  73.4     7.3 0.00019   19.2   5.3  121  129-272    89-212 (299)
 43 PRK13127 consensus              72.1     7.9  0.0002   19.0   9.8  199   30-267    10-225 (262)
 44 TIGR01962 NuoD NADH dehydrogen  71.0     7.1 0.00018   19.3   4.0  108  209-327   148-265 (408)
 45 pfam06180 CbiK Cobalt chelatas  70.1     3.2 8.1E-05   21.6   2.1   64  188-254    82-148 (256)
 46 COG2089 SpsE Sialic acid synth  68.8     8.7 0.00022   18.7   4.1   89  156-260    78-167 (347)
 47 TIGR03217 4OH_2_O_val_ald 4-hy  66.8      10 0.00026   18.3  13.3  137  131-282    92-233 (333)
 48 PRK12838 carbamoyl phosphate s  66.0     4.5 0.00011   20.7   2.2   71  201-277   200-270 (356)
 49 PRK12564 carbamoyl phosphate s  65.8     5.3 0.00014   20.1   2.5   65  201-270   204-268 (355)
 50 PRK13125 trpA tryptophan synth  65.6      11 0.00027   18.1   8.5  207   28-267     2-215 (247)
 51 cd00311 TIM Triosephosphate is  62.6      12 0.00031   17.8   4.7   20  243-262   200-220 (242)
 52 PRK08318 dihydropyrimidine deh  62.0      12 0.00032   17.7   7.8   40  228-267   239-280 (413)
 53 pfam04481 DUF561 Protein of un  61.2     3.6 9.3E-05   21.2   1.0  161  186-356    62-241 (243)
 54 pfam12167 DUF3596 Domain of un  58.9     9.9 0.00025   18.3   2.9   32  333-365    30-61  (88)
 55 COG0214 SNZ1 Pyridoxine biosyn  58.7      14 0.00036   17.3   6.0   31  247-277   215-252 (296)
 56 TIGR01235 pyruv_carbox pyruvat  58.4      14 0.00036   17.3   4.3  224  108-364   632-882 (1169)
 57 cd00945 Aldolase_Class_I Class  58.2      11 0.00028   18.0   3.1   80  185-268   116-200 (201)
 58 TIGR01830 3oxo_ACP_reduc 3-oxo  57.2     8.4 0.00021   18.8   2.3   54  197-260   157-216 (238)
 59 PRK00115 hemE uroporphyrinogen  56.6      15 0.00039   17.1   8.9   23  243-265   242-264 (347)
 60 cd02809 alpha_hydroxyacid_oxid  56.6      15 0.00039   17.1   5.5  148  104-274   109-261 (299)
 61 cd04738 DHOD_2_like Dihydrooro  56.6      15 0.00039   17.1  10.2  138  127-267   146-307 (327)
 62 PRK00685 metal-dependent hydro  56.5      15 0.00039   17.1   4.4   13  133-145   151-163 (228)
 63 pfam05690 ThiG Thiazole biosyn  56.3      15 0.00039   17.0   9.9  115  127-266    73-200 (246)
 64 COG2022 ThiG Uncharacterized e  56.1      15 0.00039   17.0   8.1  115  127-266    81-208 (262)
 65 cd04728 ThiG Thiazole synthase  55.6      16  0.0004   17.0  10.0  115  127-266    74-201 (248)
 66 PRK06552 keto-hydroxyglutarate  53.8      11 0.00028   18.0   2.5   42  229-275   100-141 (209)
 67 CHL00197 carA carbamoyl-phosph  52.9      15 0.00038   17.1   3.0   71  201-276   227-298 (383)
 68 COG0505 CarA Carbamoylphosphat  52.6      16  0.0004   17.0   3.1   70  201-275   212-281 (368)
 69 TIGR03147 cyt_nit_nrfF cytochr  52.5      18 0.00045   16.7   4.3   51  301-369    37-87  (126)
 70 TIGR02082 metH methionine synt  52.4      18 0.00045   16.6   7.9  174   54-265   388-591 (1265)
 71 TIGR03190 benz_CoA_bzdN benzoy  51.7      18 0.00046   16.6   6.4  227  111-354    90-341 (377)
 72 PRK09279 pyruvate phosphate di  51.7      18 0.00046   16.6   9.3   23  244-266   537-559 (875)
 73 PRK10144 formate-dependent nit  51.5      18 0.00047   16.5   4.4   51  301-369    37-87  (126)
 74 PRK07455 keto-hydroxyglutarate  51.3      13 0.00032   17.6   2.4   32  242-274   106-137 (210)
 75 cd00452 KDPG_aldolase KDPG and  51.1      13 0.00034   17.5   2.5   42  229-275    88-129 (190)
 76 TIGR01368 CPSaseIIsmall carbam  51.1      15 0.00039   17.0   2.8   64  202-270   230-294 (383)
 77 COG1242 Predicted Fe-S oxidore  51.0      19 0.00047   16.5   4.6  127  126-256   126-274 (312)
 78 PRK07114 keto-hydroxyglutarate  49.9      13 0.00034   17.5   2.4   30  243-273   114-143 (223)
 79 pfam01081 Aldolase KDPG and KH  49.5      14 0.00037   17.2   2.5   31  242-273   101-131 (196)
 80 PRK05718 keto-hydroxyglutarate  49.4      15 0.00037   17.2   2.5   31  242-273   108-138 (212)
 81 PTZ00333 triosephosphate isome  49.3      20  0.0005   16.3   5.8   75  150-234   175-250 (252)
 82 KOG2343 consensus               49.3      20  0.0005   16.3   3.2   75  276-360   561-640 (689)
 83 PRK08904 consensus              49.0      15 0.00038   17.1   2.5   31  242-273   103-133 (207)
 84 KOG1643 consensus               48.9      17 0.00043   16.8   2.8   99  125-233   140-245 (247)
 85 PRK06015 keto-hydroxyglutarate  48.6      15 0.00039   17.1   2.5   31  242-273   108-138 (212)
 86 cd02940 DHPD_FMN Dihydropyrimi  48.1      21 0.00052   16.2   8.0   41  227-267   238-279 (299)
 87 PRK08782 consensus              47.6      16 0.00041   16.9   2.5   51  242-293   110-172 (219)
 88 cd00717 URO-D Uroporphyrinogen  47.5      21 0.00054   16.1   8.7   38  129-166   180-217 (335)
 89 pfam03918 CcmH Cytochrome C bi  47.2      21 0.00054   16.1   4.4   26  343-368    58-83  (145)
 90 PRK11320 prpB 2-methylisocitra  46.7      22 0.00055   16.1   4.5  124  127-266    94-231 (292)
 91 PRK06857 consensus              45.8      18 0.00046   16.6   2.5   31  242-273   105-135 (209)
 92 PRK13131 consensus              45.4      23 0.00057   15.9   6.5  205   30-267    10-225 (257)
 93 PRK08104 consensus              45.3      18 0.00046   16.5   2.5   31  242-273   108-138 (212)
 94 KOG4422 consensus               44.6      23 0.00059   15.8   4.9   74  287-360   337-420 (625)
 95 COG1646 Predicted phosphate-bi  43.2      15 0.00039   17.1   1.8   23  245-267   196-218 (240)
 96 cd00739 DHPS DHPS subgroup of   42.6      25 0.00063   15.6   4.3   26  117-143    13-41  (257)
 97 COG0381 WecB UDP-N-acetylgluco  41.7     9.7 0.00025   18.4   0.6   19  130-148    83-101 (383)
 98 TIGR01182 eda 2-dehydro-3-deox  40.8      21 0.00055   16.1   2.3   49  244-293   104-164 (205)
 99 TIGR02855 spore_yabG sporulati  40.7      23 0.00059   15.8   2.4   89  108-208   138-235 (292)
100 pfam06838 Alum_res Aluminium r  39.6      25 0.00063   15.7   2.4  117   84-209   130-254 (405)
101 PRK00042 tpiA triosephosphate   39.3      28 0.00071   15.3   5.9   75  150-234   174-249 (251)
102 PRK09140 2-dehydro-3-deoxy-6-p  38.8      24 0.00062   15.7   2.3   30  242-272   104-133 (206)
103 PRK00208 thiG thiazole synthas  38.8      28 0.00072   15.3   8.4  185   21-266     2-202 (256)
104 COG3963 Phospholipid N-methylt  38.7      22 0.00055   16.1   2.0   60  188-250    98-158 (194)
105 CHL00162 thiG thiamin biosynth  38.3      29 0.00073   15.2  11.1  116  126-266    81-215 (267)
106 pfam02896 PEP-utilizers_C PEP-  37.8      20  0.0005   16.3   1.7   35  239-274   244-280 (292)
107 COG1304 idi Isopentenyl diphos  35.6      24 0.00061   15.8   1.8   48  228-275   260-308 (360)
108 TIGR01422 phosphonatase phosph  34.8      33 0.00083   14.8   3.5  119  140-266    30-173 (199)
109 TIGR01212 TIGR01212 radical SA  33.7      34 0.00087   14.7   5.1   90  154-245   149-260 (307)
110 TIGR02151 IPP_isom_2 isopenten  33.6      17 0.00044   16.7   0.9  217   23-275    50-305 (349)
111 PRK05588 histidinol-phosphatas  33.0      35 0.00089   14.7   3.7   87  125-220    16-102 (256)
112 COG3088 CcmH Uncharacterized p  32.9      35 0.00089   14.7   2.4   11  195-205    64-74  (153)
113 TIGR01236 D1pyr5carbox1 1-pyrr  32.7      31 0.00079   15.0   2.0   16  304-322   321-336 (551)
114 PRK11177 phosphoenolpyruvate-p  32.6      20  0.0005   16.3   1.0   36  240-276   495-532 (575)
115 pfam01215 COX5B Cytochrome c o  32.5      32 0.00081   14.9   2.1   31  250-281    15-45  (99)
116 COG0502 BioB Biotin synthase a  32.4      36 0.00091   14.6   4.8   63  183-246   166-230 (335)
117 pfam00809 Pterin_bind Pterin b  32.2      36 0.00092   14.6   5.1   14  251-264    79-92  (208)
118 cd00423 Pterin_binding Pterin   32.1      36 0.00092   14.6   4.4  141  110-267    94-243 (258)
119 PRK00733 hppA membrane-bound p  32.0      14 0.00035   17.4   0.1   40  228-273   192-239 (682)
120 PRK12464 1-deoxy-D-xylulose 5-  31.9      29 0.00074   15.2   1.8  110  184-304   167-300 (392)
121 TIGR01001 metA homoserine O-su  31.8      26 0.00066   15.5   1.5   42  197-238    85-135 (305)
122 PRK01295 phosphoglyceromutase;  31.7      37 0.00093   14.5   5.5  150   80-265    18-174 (206)
123 COG4822 CbiK Cobalamin biosynt  31.3      37 0.00095   14.5   3.2   71  187-260    83-156 (265)
124 TIGR00854 pts-sorbose PTS syst  30.9      36 0.00091   14.6   2.1   61  196-267    40-101 (152)
125 PRK07094 biotin synthase; Prov  30.8      38 0.00097   14.4   5.7   74  184-260   153-241 (323)
126 PRK05567 inositol-5'-monophosp  30.7      38 0.00097   14.4   6.1   23  340-362   429-454 (486)
127 pfam09419 DUF2010 Protein of u  29.9      21 0.00055   16.1   0.8   37   32-68     16-55  (166)
128 PRK13124 consensus              29.6      40   0.001   14.3   8.2  197   30-267     8-221 (257)
129 pfam03030 H_PPase Inorganic H+  29.6      20  0.0005   16.3   0.6   37  228-270   183-227 (669)
130 PRK11197 lldD L-lactate dehydr  29.4      40   0.001   14.3   3.4   36  228-265   234-269 (381)
131 pfam08436 DXP_redisom_C 1-deox  29.3      27 0.00068   15.4   1.2   24   87-110    24-48  (84)
132 PRK10810 anti-sigma28 factor F  28.1      42  0.0011   14.1   2.1   13  345-357    64-76  (98)
133 COG0157 NadC Nicotinate-nucleo  27.7      43  0.0011   14.1   3.7   31  246-276   239-269 (280)
134 cd03332 LMO_FMN L-Lactate 2-mo  27.7      43  0.0011   14.1   3.5   37  228-266   242-278 (383)
135 TIGR01769 GGGP geranylgeranylg  27.6      43  0.0011   14.1   2.4   70  196-266   137-209 (212)
136 PRK08385 nicotinate-nucleotide  27.5      43  0.0011   14.1   3.6   52  225-276   215-267 (279)
137 cd02922 FCB2_FMN Flavocytochro  27.5      43  0.0011   14.0   3.6   37  228-266   202-238 (344)
138 PRK11840 bifunctional sulfur c  27.3      43  0.0011   14.0   7.9  143  111-266    79-276 (327)
139 cd00381 IMPDH IMPDH: The catal  27.1      44  0.0011   14.0   6.4  111  133-266   100-223 (325)
140 COG0743 Dxr 1-deoxy-D-xylulose  26.3      38 0.00097   14.4   1.6   23  123-145    73-95  (385)
141 CHL00200 trpA tryptophan synth  26.2      45  0.0012   13.9   9.3  120  125-267   105-229 (263)
142 pfam04777 Evr1_Alr Erv1 / Alr   26.2      26 0.00067   15.5   0.7   33  305-337    37-72  (95)
143 KOG1057 consensus               26.1      45  0.0011   13.9   1.9  102  248-350   510-646 (1018)
144 PRK04053 rps13p 30S ribosomal   25.9      46  0.0012   13.9   3.1   19  246-264    30-48  (149)
145 TIGR02026 BchE magnesium-proto  25.8      46  0.0012   13.9   3.7  111  118-250    43-154 (506)
146 TIGR03152 cyto_c552_HCOOH form  25.8      46  0.0012   13.9   7.8   98  259-368   239-337 (439)
147 cd04736 MDH_FMN Mandelate dehy  25.8      46  0.0012   13.8   3.4   36  228-265   225-260 (361)
148 TIGR01788 Glu-decarb-GAD gluta  25.7      46  0.0012   13.8   2.9  176   31-209   177-406 (493)
149 TIGR01125 TIGR01125 MiaB-like   25.6      46  0.0012   13.8   2.2   18  150-167   289-306 (475)
150 PRK06267 hypothetical protein;  25.3      47  0.0012   13.8   6.8   51  184-237   141-194 (324)
151 cd00517 ATPS ATP-sulfurylase (  24.5      49  0.0012   13.7   8.6  105   78-208   109-218 (356)
152 pfam11876 DUF3396 Protein of u  24.4      49  0.0012   13.7   3.6   21  125-145    72-92  (208)
153 TIGR01371 met_syn_B12ind 5-met  24.2      49  0.0013   13.7   3.8   14   53-66     47-60  (778)
154 cd02810 DHOD_DHPD_FMN Dihydroo  24.2      49  0.0013   13.7   8.9   43  225-267   227-270 (289)
155 pfam05853 DUF849 Prokaryotic p  24.0      50  0.0013   13.6   9.1  132  125-265    87-225 (274)
156 cd01568 QPRTase_NadC Quinolina  23.9      50  0.0013   13.6   3.2   30  247-276   233-262 (269)
157 PRK05447 1-deoxy-D-xylulose 5-  23.7      40   0.001   14.3   1.3   94  172-275   153-256 (379)
158 pfam01729 QRPTase_C Quinolinat  23.5      51  0.0013   13.6   3.9   64  205-276    96-162 (169)
159 PRK07107 inositol-5-monophosph  23.5      51  0.0013   13.6   6.4   83  179-266   227-309 (497)
160 TIGR01464 hemE uroporphyrinoge  23.1      52  0.0013   13.5   6.8   39  129-167   184-222 (351)
161 cd04737 LOX_like_FMN L-Lactate  23.0      52  0.0013   13.5   3.4   24  242-265   222-245 (351)
162 cd00924 Cyt_c_Oxidase_Vb Cytoc  22.9      47  0.0012   13.8   1.5   29  250-280    15-43  (97)
163 pfam01680 SOR_SNZ SOR/SNZ fami  22.8      52  0.0013   13.5   3.6  135  209-364    46-186 (209)
164 TIGR00793 kdgT 2-keto-3-deoxyg  22.6      42  0.0011   14.1   1.2   33  185-217   179-212 (314)
165 pfam00218 IGPS Indole-3-glycer  22.5      53  0.0014   13.4   4.0   37  231-267   199-236 (254)
166 COG3303 NrfA Formate-dependent  22.3      42  0.0011   14.1   1.2   67  249-325   281-351 (501)
167 PRK00719 alkanesulfonate monoo  22.0      54  0.0014   13.4   2.4   23  249-271   304-331 (377)
168 PRK04180 pyridoxine biosynthes  21.8      55  0.0014   13.3   4.2   31  247-277   212-249 (293)
169 cd04722 TIM_phosphate_binding   21.7      55  0.0014   13.3   8.9  120  128-267    73-197 (200)
170 KOG4175 consensus               21.1      56  0.0014   13.3   4.8  113  126-260   110-227 (268)
171 KOG3985 consensus               21.0      31  0.0008   15.0   0.3   19  132-150    78-96  (283)
172 PRK11061 fused phosphoenolpyru  21.0      52  0.0013   13.5   1.4   35  241-276   662-698 (748)
173 KOG2833 consensus               20.8      57  0.0015   13.2   5.1   49  202-260   240-288 (395)
174 pfam00478 IMPDH IMP dehydrogen  20.7      57  0.0015   13.2   6.0   17  248-264   334-350 (467)
175 KOG1606 consensus               20.6      37 0.00095   14.5   0.6   31  247-277   216-253 (296)
176 cd04727 pdxS PdxS is a subunit  20.6      58  0.0015   13.2   3.8   31  247-277   203-240 (283)
177 PTZ00134 40S ribosomal protein  20.4      58  0.0015   13.2   2.7   18  247-264    36-53  (154)
178 TIGR01718 Uridine-psphlse urid  20.4      54  0.0014   13.4   1.4   11  256-266    74-84  (248)
179 PRK07084 fructose-bisphosphate  20.4      58  0.0015   13.2   7.9  101  155-258   117-235 (321)
180 TIGR01762 chlorin-enz chlorina  20.3      59  0.0015   13.1   2.2   31  125-155    75-105 (293)
181 COG1897 MetA Homoserine trans-  20.3      58  0.0015   13.2   1.5   17  203-219    93-109 (307)
182 KOG0604 consensus               20.2      46  0.0012   13.9   1.0   69  267-341   257-325 (400)
183 COG3411 Ferredoxin [Energy pro  20.1      59  0.0015   13.1   2.4   40   90-137     4-43  (64)
184 PRK12460 2-keto-3-deoxyglucona  20.1      22 0.00057   16.0  -0.6   34  184-217   170-204 (308)
185 PRK05665 amidotransferase; Pro  20.1      59  0.0015   13.1   3.9  159  184-367    42-235 (240)

No 1  
>TIGR00430 Q_tRNA_tgt queuine tRNA-ribosyltransferase; InterPro: IPR004803   The queuine tRNA-ribosyltransferase (tgt) 2.4.2.29 from EC catalyzes an exchange for the guanine base at position 34 of many tRNAs; this nucleotide is subsequently modified to queuosine. The archaea have a closely related enzyme (IPR004804 from INTERPRO) that catalyses a base exchange for guanine at position 15 in some tRNAs, a site that is subsequently converted to the archaeal-specific modified base archaeosine (7-formamidino-7-deazaguanosine), while Archaeoglobus fulgidus has both enzymes. ; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0008616 queuosine biosynthetic process.
Probab=100.00  E-value=0  Score=1052.58  Aligned_cols=365  Identities=52%  Similarity=0.883  Sum_probs=360.1

Q ss_pred             EEEEEECCC--CEEEEEEECCEEEECCCEEECCCCCCCCCCCHHHHHHCC-CCEEEEEHHHHHHCCCHHHHHHCCCCHHH
Q ss_conf             999976499--327999878875405857410686856886889998609-98999322665738768998652742011
Q gi|254780178|r    7 FNLKAVSGS--ARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLG-ADVILGNAYHLMLRPGAERIARLGGLHKF   83 (378)
Q Consensus         7 F~i~~~~~~--aR~G~L~t~~g~i~TP~flpv~t~g~v~~lt~~~l~~~g-~~~il~Ntyhl~~~pg~~~i~~~gGlh~f   83 (378)
                      |+++++++.  ||+|.|.|+||.||||+||||+|-|+||+++|.+|++++ +++||+||||||||||.++|+++||||+|
T Consensus         1 f~~~~~~~~~~AR~G~l~~~HG~veTP~FMPVGTlgtvKgl~~~~l~~~~Ga~~iLaNTYHL~LRPG~~~v~~~GGLH~F   80 (415)
T TIGR00430         1 FELQKTDKHSNARVGKLNTPHGSVETPVFMPVGTLGTVKGLTPEELKATGGAELILANTYHLYLRPGEKIVKELGGLHKF   80 (415)
T ss_pred             CEEECCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHCCCEEEEECHHHHHCCCHHHHHHHHCCCCCH
T ss_conf             90202357553515465368886436764751379730489989998743846744021333136818999984586001


Q ss_pred             CCCCCCEEECCCCCCCCHHH----------------------HCCCCCCC----------CEEEECCCCCCEEEECHHHH
Q ss_conf             01577224114543210122----------------------10223333----------10210144541587129999
Q gi|254780178|r   84 IRWFKPILTDSGGFQVMSLS----------------------KLCSIDEQ----------GVRFRSHIDGSLYRVSPEES  131 (378)
Q Consensus        84 l~~~~~ilTDSGgfQv~sl~----------------------~~~~~~~~----------Gv~f~s~~dG~~~~ltpe~~  131 (378)
                      |+|+|+||||||||||||||                      +.++|+|+          ||.||||+||++++||||.+
T Consensus        81 m~w~g~iLTDSGGFQvFSLsfG~ehGvGkiannifleelree~lR~i~e~rkklavvtdrGV~Fk~p~dG~~~~ltPek~  160 (415)
T TIGR00430        81 MQWDGPILTDSGGFQVFSLSFGMEHGVGKIANNIFLEELREEDLRKIEEERKKLAVVTDRGVHFKSPIDGSKIFLTPEKS  160 (415)
T ss_pred             HCCCCCEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEECCCCCCCEEEECHHHH
T ss_conf             03587746406750231200001100357787788876314432001000221567634760435788887020185789


Q ss_pred             HHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC---CCCEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf             9998732897799601213322115899999998899999998851358---8860554023444366899998876422
Q gi|254780178|r  132 VHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQ---PGKALFGIVQGGDNINLRSFSAERLKEL  208 (378)
Q Consensus       132 i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~---~~~~lfgiVqGG~~~dLR~~Sa~~l~~~  208 (378)
                      |++|..|||||+|+||+|||++++++++++|++||.|||++|+++|++.   .+|+||||||||.|+|||++|++.|.++
T Consensus       161 ~~IQ~~LGSDIiM~fDeC~p~~ad~~~~~~s~~rt~rWA~~~l~~~~~~~~G~~~~LFgIvQGg~y~dLR~~S~~~L~~~  240 (415)
T TIGR00430       161 MEIQYALGSDIIMAFDECTPYPADYDYAEKSTERTLRWAERCLEAHDRRKEGNKQALFGIVQGGTYEDLRSQSAKGLIEL  240 (415)
T ss_pred             HHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHC
T ss_conf             99998628977987026887886578999999987999999998620247887775346870730488899999999861


Q ss_pred             HHHHHHHHCC-CCCCCHHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCC--CC
Q ss_conf             2346766413-56751678998999898507703310025410189999998538983662000002332002456--21
Q gi|254780178|r  209 DLKGYAIGGL-AVGEPQEVMLHILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTR--FG  285 (378)
Q Consensus       209 ~~~G~aIgGl-~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t~--~g  285 (378)
                      ||+||||||| |||||+++|.+||+++.|+||+||||||||||+|++|+.||..||||||||+|||.||||.+||.  +|
T Consensus       241 df~GYAIGGLisVGEp~~~m~~il~~~~PLlP~dKPRYLMGvG~p~~l~~ai~~GiDmFDCV~PtR~aR~G~lfv~Pa~G  320 (415)
T TIGR00430       241 DFPGYAIGGLISVGEPKDDMLRILEHTAPLLPKDKPRYLMGVGTPEDLLDAIRRGIDMFDCVMPTRNARNGTLFVTPAEG  320 (415)
T ss_pred             CCCCCEEECEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHCCCHHHHCCCCEEEEECCCC
T ss_conf             88950450324125888998889987503577768840205488899999998167410045201111583378632788


Q ss_pred             -------CHHHHHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf             -------0021012322368855986698133688989998868578508999999999999999999999999859989
Q gi|254780178|r  286 -------KINLRNARHIDDMRPLDAESHCSALRDYSRAYLHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFV  358 (378)
Q Consensus       286 -------~i~l~~~~~~~d~~pi~~~C~C~~C~~ytraYl~HL~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~  358 (378)
                             +++|+|++|+.|.+|||++|+||||++|||||||||++++|+++.+|+|+|||+||.+||++||+||.|++|.
T Consensus       321 Gnvrnkf~~~ikNA~y~~D~~P~d~~C~Cy~Ck~YSRAYL~HL~r~~EllG~rL~s~HNl~f~~rL~~~iR~AI~~d~f~  400 (415)
T TIGR00430       321 GNVRNKFRINIKNAKYKDDTRPVDEECDCYTCKNYSRAYLRHLIRAKELLGARLASLHNLHFLLRLMEKIRQAILEDRFL  400 (415)
T ss_pred             CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             62012136762464632477688877776314411278987888631799999977889999999999998875368733


Q ss_pred             HHHHHHHHHHHCC
Q ss_conf             9999999985327
Q gi|254780178|r  359 DFAMQTQENWKKG  371 (378)
Q Consensus       359 ~~~~~~~~~~~~~  371 (378)
                      +|+++|+++|...
T Consensus       401 ~F~~~f~~~~g~~  413 (415)
T TIGR00430       401 SFREEFLEKYGEE  413 (415)
T ss_pred             CHHHHHHHHCCCC
T ss_conf             0589999972578


No 2  
>PRK00112 tgt queuine tRNA-ribosyltransferase; Provisional
Probab=100.00  E-value=0  Score=969.72  Aligned_cols=365  Identities=56%  Similarity=0.927  Sum_probs=359.7

Q ss_pred             CCCEEEEEEECCCCEEEEEEECCEEEECCCEEECCCCCCCCCCCHHHHHHCCCCEEEEEHHHHHHCCCHHHHHHCCCCHH
Q ss_conf             87049999764993279998788754058574106868568868899986099899932266573876899865274201
Q gi|254780178|r    3 KNFHFNLKAVSGSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNAYHLMLRPGAERIARLGGLHK   82 (378)
Q Consensus         3 ~~~~F~i~~~~~~aR~G~L~t~~g~i~TP~flpv~t~g~v~~lt~~~l~~~g~~~il~Ntyhl~~~pg~~~i~~~gGlh~   82 (378)
                      .+|+|||+++|++||+|+|.|+||+|+||+||||+|+|+||+++|++|+++|++++++||||||+|||.++++++||||+
T Consensus         1 ~~~~Fei~~~d~~AR~G~l~t~hg~i~TP~fmPVgt~~~vk~l~p~~l~~~g~~~il~NtYhl~lrpg~~~i~~~gGlH~   80 (366)
T PRK00112          1 TMMKFELIKTDGRARRGRLTTPHGVVETPAFMPVGTYGTVKGMTPEELKETGAQIILGNTYHLWLRPGEEVIKKHGGLHK   80 (366)
T ss_pred             CCEEEEEEECCCCCCEEEEEECCEEEECCEEEEEECCCCCCCCCHHHHHHHCCCEEEHHHHHHHHCCCHHHHHHHCCHHH
T ss_conf             94699996130761338998399146388160410556457679999998289999646668776774899987088787


Q ss_pred             HCCCCCCEEECCCCCCCCHHHHCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHH
Q ss_conf             10157722411454321012210223333102101445415871299999998732897799601213322115899999
Q gi|254780178|r   83 FIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRA  162 (378)
Q Consensus        83 fl~~~~~ilTDSGgfQv~sl~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~s  162 (378)
                      ||+|+|||||||||||++||++.++++++||+|+||+||+++++|||++|++|+.|||||+|+||+||+++++++++++|
T Consensus        81 fm~w~g~ilTDSGgfQv~Sl~~~~~i~e~Gv~F~s~~dG~~~~ltPE~~i~~Q~~iGsDI~m~lD~~~~~~~~~~~~~~a  160 (366)
T PRK00112         81 FMNWDGPILTDSGGFQVFSLSDLRKITEEGVTFRSHIDGSKHFLTPEKSMEIQYDLGSDIVMAFDECPPYPATYDYAKKS  160 (366)
T ss_pred             HCCCCCCEEECCCCEEEEEECCCCEECCCCEEEECCCCCCEEECCHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHH
T ss_conf             62799981325760025672245343267069866768973664899999999961998799877567999889999999


Q ss_pred             HHHHHHHHHHHHHHHCCC-CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf             998899999998851358-8860554023444366899998876422234676641356751678998999898507703
Q gi|254780178|r  163 MELSLRWAERSLVAFGNQ-PGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVE  241 (378)
Q Consensus       163 v~rT~~w~~~~~~~~~~~-~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~  241 (378)
                      |+||++|++||++++.+. ..|+||||||||.++|||++|++++.+++|+||||||+++||++++|.++|+++++.||++
T Consensus       161 ~~rT~rWa~r~~~~~~~~~~~q~lfgiVQGG~~~dLR~~Sa~~l~~~~f~G~aIGGlsvGe~~~~~~~il~~~~~~LP~~  240 (366)
T PRK00112        161 MERTLRWAERSRDAHDRLENGQALFGIVQGGVYEDLREESAKGLVEIDFDGYAIGGLSVGEPKEEMYRILEHTAPLLPED  240 (366)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             99999999999999860788753887415766799999999999848984885467456778999999999987448877


Q ss_pred             HHEECCCCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHH
Q ss_conf             31002541018999999853898366200000233200245621002101232236885598669813368898999886
Q gi|254780178|r  242 RPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDAESHCSALRDYSRAYLHHL  321 (378)
Q Consensus       242 kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t~~g~i~l~~~~~~~d~~pi~~~C~C~~C~~ytraYl~HL  321 (378)
                      |||||||||+|++|+.+|++||||||||+|||+||||++||++|++||+|++|++|++|||++|+||+|++|||||||||
T Consensus       241 kPryLmGvG~P~~i~~~V~~GvD~FDcv~Ptr~AR~G~~~T~~G~l~l~~~~~~~D~~Pid~~C~C~~C~~ySraYLhhL  320 (366)
T PRK00112        241 KPRYLMGVGTPEDLVEGVARGVDMFDCVMPTRNARNGTLFTSFGRLNIRNAKYKDDTRPLDPECDCYTCRNYSRAYLHHL  320 (366)
T ss_pred             CCEEEECCCCHHHHHHHHHHCCCCHHCCCCHHHHHCCCEECCCCEEEECCCHHCCCCCCCCCCCCCHHHCCCCHHHHHHH
T ss_conf             75565358998999999993898111254057771584645698588231221168998798999934460499999777


Q ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             8578508999999999999999999999999859989999999998
Q gi|254780178|r  322 LRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQEN  367 (378)
Q Consensus       322 ~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~~~~  367 (378)
                      ++++|+++++||++|||+||.+||++||+||++|+|++|+++|+++
T Consensus       321 ~k~~E~l~~~Llt~HNL~~~~~l~~~iR~aI~~g~f~e~~~~~l~~  366 (366)
T PRK00112        321 FRAGEILGARLLTIHNLHYYQRLMEEIREAIEEGRFLEFRAEFLAR  366 (366)
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
T ss_conf             3079568999999999999999999999999859899999999729


No 3  
>COG0343 Tgt Queuine/archaeosine tRNA-ribosyltransferase [Translation, ribosomal structure and biogenesis]
Probab=100.00  E-value=0  Score=921.51  Aligned_cols=369  Identities=55%  Similarity=0.898  Sum_probs=364.1

Q ss_pred             EEEEEECCCCEEEEEEECCEEEECCCEEECCCCCCCCCCCHHHHHHCCCCEEEEEHHHHHHCCCHHHHHHCCCCHHHCCC
Q ss_conf             99997649932799987887540585741068685688688999860998999322665738768998652742011015
Q gi|254780178|r    7 FNLKAVSGSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNAYHLMLRPGAERIARLGGLHKFIRW   86 (378)
Q Consensus         7 F~i~~~~~~aR~G~L~t~~g~i~TP~flpv~t~g~v~~lt~~~l~~~g~~~il~Ntyhl~~~pg~~~i~~~gGlh~fl~~   86 (378)
                      |+++++|++||+|+|.|+||+||||+||||+|.|+||+++|++|+++|++++|+||||||+|||.+.++..||||+||+|
T Consensus         1 f~~~~~d~~aR~G~l~t~hg~ieTP~FmPVgt~~~vk~~~~~~l~~~ga~iil~NtYhl~lrpg~e~i~~~gGlH~f~~w   80 (372)
T COG0343           1 FEILAKDGGARVGRLETPHGVIETPAFMPVGTNGTVKGMTPEELKELGAQIILTNTYHLYLRPGLEIVALLGGLHKFMGW   80 (372)
T ss_pred             CEEECCCCCEEEEEEECCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCEEEECEEEEEECCCHHHHHHCCCHHHHHCC
T ss_conf             92224689735789971897452781652565454556799999865998895121311008852688870787888648


Q ss_pred             CCCEEECCCCCCCCHHHHCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHH
Q ss_conf             77224114543210122102233331021014454158712999999987328977996012133221158999999988
Q gi|254780178|r   87 FKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELS  166 (378)
Q Consensus        87 ~~~ilTDSGgfQv~sl~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT  166 (378)
                      ++||||||||||++||++.++++++||.|+||+||+++++|||++|++|+.|||||+|+||+|||++++++++++||+||
T Consensus        81 ~~pilTDSGgFQv~sL~~~~~~~e~gv~f~s~~dG~k~~~tpe~s~~iQ~~lGsDI~m~lDe~~~~~a~~~~a~~s~erT  160 (372)
T COG0343          81 DGPILTDSGGFQVFSLGDLRKITEEGVTFKSHIDGSKVFLTPEESMEIQKDLGSDIIMILDECTPPPADREYAEKSVERT  160 (372)
T ss_pred             CCCEEECCCCEEEEECCCCCCCCCCCCEEECCCCCCEEECCCHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf             99725357760578744333332244033124677503238099999999848966555475999998699999999999


Q ss_pred             HHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEEC
Q ss_conf             99999998851358886055402344436689999887642223467664135675167899899989850770331002
Q gi|254780178|r  167 LRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYL  246 (378)
Q Consensus       167 ~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l  246 (378)
                      .|||+||++++++..+|+||||||||.|+|||++||+.+.+++|+||||||+++||++++|.+++.++.+.||++|||||
T Consensus       161 ~rwa~r~~~~~~~~~~~~lfgivQGg~y~dLR~~sa~~l~~l~f~gyaIGGl~vge~~~~m~~il~~~~~~Lp~~kPryL  240 (372)
T COG0343         161 LRWAERSLEAHKRLNDQALFGIVQGGTYEDLRRRSAEELNELDFDGYAIGGLSVGEPKEDMVRILEATKPLLPEDKPRYL  240 (372)
T ss_pred             HHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEE
T ss_conf             99999999987466776588742387768799999999973799853405856787789999999986400899998775


Q ss_pred             CCCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHHHHCCC
Q ss_conf             54101899999985389836620000023320024562100210123223688559866981336889899988685785
Q gi|254780178|r  247 MGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDAESHCSALRDYSRAYLHHLLRVNE  326 (378)
Q Consensus       247 ~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t~~g~i~l~~~~~~~d~~pi~~~C~C~~C~~ytraYl~HL~~~~E  326 (378)
                      ||+|+|++|+.+|++||||||||+|||+||+|+++|.+|.+||++++|++|++||+++|+||+|++|||||+|||++++|
T Consensus       241 mGvG~P~~i~~aV~~GvDmFDcv~ptr~aR~g~~~t~~G~~~i~~~k~~~d~~pld~~C~C~~C~~ysRayl~hL~~~~e  320 (372)
T COG0343         241 MGVGHPEDIVEAVALGVDMFDCVMPTRYARNGRLLTRDGRVNIRNAKLAEDTRPLDEPCSCPTCRNYSRAYLRHLRRANE  320 (372)
T ss_pred             ECCCCHHHHHHHHHHCCCHHHCCCHHHHCCCCCEEEECCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCH
T ss_conf             56879899999999487324235135530579478505851102144654078879998881127854016999974656


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf             0899999999999999999999999985998999999999853279986
Q gi|254780178|r  327 SLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQENWKKGDIPP  375 (378)
Q Consensus       327 ~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~~~~~~~~~~~~  375 (378)
                      +++++|+++||||+|+++|++||+||++|+|++|+++|.+.|..+..+.
T Consensus       321 ~~~~~L~t~HNL~~~~~lm~~iR~AI~eg~f~e~~~~~~~~~~~~~~~~  369 (372)
T COG0343         321 ELGARLLTIHNLYFYLRLMKEIRQAIKEGRFLEFVEEFAEKHPRLLPAY  369 (372)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCC
T ss_conf             8899999999999999999999998854978999999999643356655


No 4  
>PRK01008 queuine tRNA-ribosyltransferase; Provisional
Probab=100.00  E-value=0  Score=907.38  Aligned_cols=349  Identities=38%  Similarity=0.643  Sum_probs=338.2

Q ss_pred             CCEEEEEEEC--CCCEEEEEEECCEEEECCCEEECCCCCCCCCCCHHHHHHCCCCEEEEEHHHHHHCCCHHHHHHCCCCH
Q ss_conf             7049999764--99327999878875405857410686856886889998609989993226657387689986527420
Q gi|254780178|r    4 NFHFNLKAVS--GSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNAYHLMLRPGAERIARLGGLH   81 (378)
Q Consensus         4 ~~~F~i~~~~--~~aR~G~L~t~~g~i~TP~flpv~t~g~v~~lt~~~l~~~g~~~il~Ntyhl~~~pg~~~i~~~gGlh   81 (378)
                      .|+|+|++++  ++||+|+|.|+||+|+||+||||+|+|+||++    ++++|+|++|+|||||+++||.++|+++||||
T Consensus         2 ~~~Fei~~~~~~~~AR~G~l~t~hG~i~TP~fmPV~T~~~vk~~----l~~~g~~~il~NtYHL~lrpG~~~i~~~gGlH   77 (372)
T PRK01008          2 ALKFELIHQSKKSRARVGRIETAHGIIDTPAFVPVATNGALKGV----LDHSNIPLMFCNTYHLLVHPGTEAVAAMGGLH   77 (372)
T ss_pred             CEEEEEEEECCCCCEEEEEEEECCEEEECCCEEEECCCCCCHHH----HHHCCCCEEECHHHHHHHCCCHHHHHHCCCHH
T ss_conf             44899984079986525999859906618927550266523203----76549998810566887687588998738714


Q ss_pred             HHCCCCCCEEECCCCCCCCHHH------------------HCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEE
Q ss_conf             1101577224114543210122------------------1022333310210144541587129999999873289779
Q gi|254780178|r   82 KFIRWFKPILTDSGGFQVMSLS------------------KLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQ  143 (378)
Q Consensus        82 ~fl~~~~~ilTDSGgfQv~sl~------------------~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~  143 (378)
                      +||+|++||||||||||++||.                  +..+|+++||.|+||+||+++++|||++|++|+.|||||+
T Consensus        78 ~fm~w~~pilTDSGGfQv~SL~~g~v~~e~~~~~~~~~~~~l~~ite~Gv~F~s~~dG~~~~ltPE~~i~~Q~~iGsDI~  157 (372)
T PRK01008         78 QFIGRNAPIITDSGGFQIFSLAYGSVAEEIKSCGKKKGGSSILKITDEGVWFKSYRDGRKLFLSPEVSVQAQKDLGADII  157 (372)
T ss_pred             HHCCCCCCEEECCCCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHHCCCEE
T ss_conf             43169987433378632566303640122102233234344442135724775577896244289999999997489889


Q ss_pred             EEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             9601213322115899999998899999998851358-886055402344436689999887642223467664135675
Q gi|254780178|r  144 MQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQ-PGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGE  222 (378)
Q Consensus       144 ~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~-~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge  222 (378)
                      |+||+|++++++++++++|++||++|++||++++... .+|+||||||||.++|||++|++++.+++|+|||||| ++||
T Consensus       158 m~lD~~~~~~~~~~~~~~s~~rT~rW~~r~~~~~~~~~~~q~lfgIVQGG~~~dLR~~sa~~l~~~~fdGyaIGG-svge  236 (372)
T PRK01008        158 IPLDELLPFHTDPTYFLQSCSRTYVWEKRSLDYHLKNPRHQSMYGVIHGGIDPDQRKIGCAFVEDLPFDGSAIGG-SLGK  236 (372)
T ss_pred             EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEECC-CCCC
T ss_conf             987878899977999999999999999999999852975526874246788799999999998627985388666-5765


Q ss_pred             CHHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCC
Q ss_conf             16789989998985077033100254101899999985389836620000023320024562100210123223688559
Q gi|254780178|r  223 PQEVMLHILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLD  302 (378)
Q Consensus       223 ~~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t~~g~i~l~~~~~~~d~~pi~  302 (378)
                      ++++|.++|.++.+.||++|||||||+|+|++|+.+|++||||||||+|||+||||++||++|++||++++|++|++|||
T Consensus       237 ~~~~~~~il~~~~~~LP~~kPRyLmGvG~p~~i~~~V~~GvDmFDcv~Ptr~AR~G~~~t~~G~~~i~~~~y~~D~~Pid  316 (372)
T PRK01008        237 NLQEMVEVVDITTSNLSKERPVHLLGIGDLPSIWATVGFGIDSFDSSYPTKAARHGLILTSQGPLKINNQRYSSDLNPIE  316 (372)
T ss_pred             CHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCHHHCCHHHHHHCCCEEEECCCEEECCCHHHCCCCCCCC
T ss_conf             79999999999984689998758705898799999998098554433526866276698038707717334235899879


Q ss_pred             CCCCCHHH-CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf             86698133-68898999886857850899999999999999999999999985998
Q gi|254780178|r  303 AESHCSAL-RDYSRAYLHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCF  357 (378)
Q Consensus       303 ~~C~C~~C-~~ytraYl~HL~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f  357 (378)
                      ++|+|||| ++|||||||||++++|+++++||++|||+||.+||++||+||++|++
T Consensus       317 ~~C~C~tC~~~ySraYL~HL~~~~E~l~~~LltiHNl~~~~~lm~~iR~aI~~~~l  372 (372)
T PRK01008        317 PGCSCLACSSGISRAYLRHLFKVHEPNAGIWASIHNLHHMQQVMKEIREQILNDEI  372 (372)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             49999766998889999998768947999999999999999999999999974899


No 5  
>KOG3908 consensus
Probab=100.00  E-value=0  Score=775.76  Aligned_cols=372  Identities=40%  Similarity=0.717  Sum_probs=362.3

Q ss_pred             CEEEEEEEC--CCCEEEEEEECCEEEECCCEEECCCCCCCCCCCHHHHHHCCCCEEEEEHHHHHHCCCHHHHHHCCCCHH
Q ss_conf             049999764--993279998788754058574106868568868899986099899932266573876899865274201
Q gi|254780178|r    5 FHFNLKAVS--GSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNAYHLMLRPGAERIARLGGLHK   82 (378)
Q Consensus         5 ~~F~i~~~~--~~aR~G~L~t~~g~i~TP~flpv~t~g~v~~lt~~~l~~~g~~~il~Ntyhl~~~pg~~~i~~~gGlh~   82 (378)
                      +.|++.++.  ++||+|.|.++|+.++||.||||+|.|++|++.|++|.++|++++|.|||||-+|||.+.++++||+|+
T Consensus         8 ~~~kvvarcs~t~AR~g~l~Lph~~vetPVFMPVGTqgtmKGI~peqL~~l~Cri~L~NTYHLGlrPG~E~~k~agGlh~   87 (396)
T KOG3908           8 LDFKVVARCSTTRARVGTLELPHSSVETPVFMPVGTQGTMKGIVPEQLDELGCRILLGNTYHLGLRPGHELLKKAGGLHK   87 (396)
T ss_pred             HHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCEEEECCCEECCCCCCHHHHHHCCCHHH
T ss_conf             02224434134411003455378630355235324411125656889876288788336111256771888875113676


Q ss_pred             HCCCCCCEEECCCCCCCCHHHHCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHH
Q ss_conf             10157722411454321012210223333102101445415871299999998732897799601213322115899999
Q gi|254780178|r   83 FIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRA  162 (378)
Q Consensus        83 fl~~~~~ilTDSGgfQv~sl~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~s  162 (378)
                      ||+|+..|||||||||+.||.++..++|+||+|+|+.||+...||||.+|++|.+||+||+|.|||.+......++.+.|
T Consensus        88 fm~wnr~iLTDSGGFQmvSL~~l~~vtE~GV~F~SP~dg~~~lltPE~Si~iQnalG~DImMQLDdVV~~~ttg~rveeA  167 (396)
T KOG3908          88 FMNWNRNILTDSGGFQMVSLLKLATVTEDGVRFRSPHDGEDMLLTPEKSIEIQNALGADIMMQLDDVVHTLTTGPRVEEA  167 (396)
T ss_pred             HHCCCHHHEECCCCEEEEEECCEEEECCCCEEECCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf             73385421415887079760010264357625348989974134821207998774511645530300116776179999


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf             99889999999885135888605540234443668999988764222346766413567516789989998985077033
Q gi|254780178|r  163 MELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVER  242 (378)
Q Consensus       163 v~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~k  242 (378)
                      +.||+||++||+.+|.+.+.|+||+|||||++.+||++|++++.+++..|+|||||+.||++.+++++|..++..||++|
T Consensus       168 M~RsIRWlDRCi~Ah~R~d~Q~lFpIiQGGLd~~LR~~c~~em~kR~~~G~AiGGLSGGEeK~~Fwr~V~~ct~~LP~dk  247 (396)
T KOG3908         168 MYRSIRWLDRCIMAHNRDDEQNLFPIIQGGLDEGLRAECIAEMLKRSVPGIAIGGLSGGEEKSEFWRMVAFCTSSLPPDK  247 (396)
T ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf             99888999999987558641001123215666678999999998427885574056787218799999999972289998


Q ss_pred             HEECCCCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHHH
Q ss_conf             10025410189999998538983662000002332002456210021012322368855986698133688989998868
Q gi|254780178|r  243 PHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDAESHCSALRDYSRAYLHHLL  322 (378)
Q Consensus       243 Pr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t~~g~i~l~~~~~~~d~~pi~~~C~C~~C~~ytraYl~HL~  322 (378)
                      ||||||||.|+|++.+|++|+||||||||||.||.|.++++.|.+++++.+|+.|+.|||+.|.|+||++|||||||+|.
T Consensus       248 PRYlMGVGya~DlVVCvaLG~DMfDCVyPTRTARFG~alv~~G~~~l~~~k~k~D~~pid~~C~C~tC~~ytRaylh~l~  327 (396)
T KOG3908         248 PRYLMGVGYAEDLVVCVALGSDMFDCVYPTRTARFGKALVDSGDLQLRQKKYKSDFGPIDETCGCPTCKKYTRAYLHALV  327 (396)
T ss_pred             CCEEECCCCCCCEEEEEHHCCCHHHCCCCCCHHHHCCCCCCCCCEEECCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf             73122167602056540007743321464404330434156653231315555214677899898124567899999970


Q ss_pred             HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCCCCCC
Q ss_conf             578508999999999999999999999999859989999999998532--7998665
Q gi|254780178|r  323 RVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQENWKK--GDIPPIF  377 (378)
Q Consensus       323 ~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~~~~~~~--~~~~~~~  377 (378)
                      . +|..+..|+++||+++..++|+.+|+||.+++|.+|+++|+..|.+  .+.|.|-
T Consensus       328 ~-~etv~~~lltiHNi~yql~Lmr~vResI~~d~fp~Fvk~Fm~~~~~D~~~~p~w~  383 (396)
T KOG3908         328 G-KETVGCHLLTIHNIAYQLQLMRDVRESIQEDRFPQFVKNFMASRFKDSREVPAWA  383 (396)
T ss_pred             C-CCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
T ss_conf             3-6532224554026999999999999998662269999999999818975484899


No 6  
>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=100.00  E-value=0  Score=694.83  Aligned_cols=327  Identities=24%  Similarity=0.389  Sum_probs=305.2

Q ss_pred             CEEEEEEECCCCEEEEEEECCEEEECCCEEECCCCCCCCCCCHHHHHHCCCCEEEEEHHHHHHCCCHHHHHHCCCCHHHC
Q ss_conf             04999976499327999878875405857410686856886889998609989993226657387689986527420110
Q gi|254780178|r    5 FHFNLKAVSGSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNAYHLMLRPGAERIARLGGLHKFI   84 (378)
Q Consensus         5 ~~F~i~~~~~~aR~G~L~t~~g~i~TP~flpv~t~g~v~~lt~~~l~~~g~~~il~Ntyhl~~~pg~~~i~~~gGlh~fl   84 (378)
                      ..|||+++|++||+|+|+|+||+|+||+|||| +.++++.++|++|+++|++++|+||||+|++||.+++++  |||+||
T Consensus         1 ~~FEI~~~D~~aRiG~L~T~hG~IeTP~fmPV-inp~vk~i~p~el~~~Ga~iIItNtY~l~~rpg~~a~~~--GLH~fm   77 (486)
T PRK13533          1 GVFEIRDKDLAGRIGKLYTPHGVVETPALFPV-INPHKQEIPPEELKEFGFEALITNSYIIYRSERERALEK--GLHELL   77 (486)
T ss_pred             CCCEEEECCCCCCEEEEECCCCEEECCCCCCC-CCCCCCCCCHHHHHHHCCCEEEEECCCEECCCCHHHHHC--CHHHHC
T ss_conf             96568733576023789708946607853235-277457118999998179899310110002760667760--708760


Q ss_pred             CCCCCEEECCCCCCCCHHHHCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHH
Q ss_conf             15772241145432101221022333310210144541587129999999873289779960121332211589999999
Q gi|254780178|r   85 RWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAME  164 (378)
Q Consensus        85 ~~~~~ilTDSGgfQv~sl~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~  164 (378)
                      +|+|||||||||||++++|++                   .+|||++|++|+.||+||+|+||.||++++++++++++++
T Consensus        78 ~wdgpImTDSGgFQv~~yG~V-------------------evtpeeiv~fQ~~IGSDI~m~lD~~t~~~~~~e~A~~sve  138 (486)
T PRK13533         78 GFDGVIMTDSGSYQLLVYGSV-------------------EVTNEEILEFQRKIGSDIGVPLDIPTGPDADREEAEEEVE  138 (486)
T ss_pred             CCCCCEEECCCCCEEEECCCE-------------------ECCHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHH
T ss_conf             999973766887643563878-------------------4268999999998499889988618996999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCH--HHHHHHHHHHHHCCCHH
Q ss_conf             88999999988513588860554023444366899998876422234676641356-7516--78998999898507703
Q gi|254780178|r  165 LSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAV-GEPQ--EVMLHILSNVLPILPVE  241 (378)
Q Consensus       165 rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~-ge~~--~~~~~ii~~~~~~LP~~  241 (378)
                      +|.+|+++|.+.+++ .+|+||||||||.|+|||++||+++.+++|+||||||+.. .|+.  .++.++|..++..||++
T Consensus       139 ~T~rrak~a~~~~~~-~~~~l~GpVQGg~y~DLR~~SA~~l~~l~FdgyaIGgvvplme~yry~~l~~~i~~ak~~lp~~  217 (486)
T PRK13533        139 ETLERAEEAAALIKD-DDMLWVGPVQGGTYPDLRERSAREASKLGFDIYPLGSPTPLMESYRYDELVDVVLAAKSGLSPG  217 (486)
T ss_pred             HHHHHHHHHHHHHCC-CCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEECCCCCHHHHHHCCHHHHHHHHHHHHHCCCCC
T ss_conf             999999999986367-7877886316878699999999999868998705788718877614799999999997229999


Q ss_pred             HHEECCCCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHH
Q ss_conf             31002541018999999853898366200000233200245621002101232236885598669813368898999886
Q gi|254780178|r  242 RPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDAESHCSALRDYSRAYLHHL  321 (378)
Q Consensus       242 kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t~~g~i~l~~~~~~~d~~pi~~~C~C~~C~~ytraYl~HL  321 (378)
                      +|+||||+|||+.++.+|++|+|+|||++|+.+||+|+++|..|+.+|.+..|.        +|+|++|++||...|+.|
T Consensus       218 ~PvHlFGaGHPm~f~lavAlG~DlFDSAsYalyArd~Rylt~~gT~~L~~l~~~--------Pc~cpvc~~ytp~el~~m  289 (486)
T PRK13533        218 APVHLFGAGHPMMFALAVALGCDLFDSASYALYARDGRYITRDGTYRLEDLEYL--------PCSCPVCSRYTPKELREM  289 (486)
T ss_pred             CCEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCEECCCCCCCHHHCCCC--------CCCCCCCCCCCHHHHHHC
T ss_conf             971541588477899999957671436889988537946776666205431153--------667750367898999727


Q ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             85785089999999999999999999999998599899999999
Q gi|254780178|r  322 LRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQ  365 (378)
Q Consensus       322 ~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~~  365 (378)
                         .+-....||+.|||+....++++|||||++|++|+|+++--
T Consensus       290 ---~~~er~~llA~HNL~v~~~Ei~~ikqaI~eg~Lwelve~r~  330 (486)
T PRK13533        290 ---PREERTRLLALHNLYVLFEEIRRIKQAIKEGRLWELVEERA  330 (486)
T ss_pred             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             ---88789999999889999999999999987395999999997


No 7  
>PRK13534 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=100.00  E-value=0  Score=635.75  Aligned_cols=324  Identities=25%  Similarity=0.383  Sum_probs=304.0

Q ss_pred             EEEEEEECCCCEEEEEEECCEEEECCCEEECCCCCCCCCCCHHHHHHCCCCEEEEEHHHHHHCCCHHHHHHCCCCHHHCC
Q ss_conf             49999764993279998788754058574106868568868899986099899932266573876899865274201101
Q gi|254780178|r    6 HFNLKAVSGSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNAYHLMLRPGAERIARLGGLHKFIR   85 (378)
Q Consensus         6 ~F~i~~~~~~aR~G~L~t~~g~i~TP~flpv~t~g~v~~lt~~~l~~~g~~~il~Ntyhl~~~pg~~~i~~~gGlh~fl~   85 (378)
                      .|||.++|++||+|+|.|+||+||||+||||+ .+.++.++|++|+++|+++++||+||+|++|+.+..+..+|||+||+
T Consensus         1 mFEI~~~D~agRiG~L~t~~g~ieTP~~~PVi-np~~~~i~p~el~~~G~~~iITNsYi~~~~~~~~~~a~~~GlH~~l~   79 (630)
T PRK13534          1 MFEIKARDALGRIGKLKTNGKKIETPTIMPVI-NPKKQTVDPKELKKMGFDIVITNSYIIYKNPELREKALEKGIHSLID   79 (630)
T ss_pred             CCCEEECCCCCCEEEEECCCCCEECCCCCCCC-CCCCCCCCHHHHHHCCCCEEEEEEEEEEECCCHHHHHHHHCHHHHCC
T ss_conf             96046235661237897489626468310204-65536349999986186589750057750762346666404798718


Q ss_pred             CCCCEEECCCCCCCCHHHHCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHH
Q ss_conf             57722411454321012210223333102101445415871299999998732897799601213322115899999998
Q gi|254780178|r   86 WFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMEL  165 (378)
Q Consensus        86 ~~~~ilTDSGgfQv~sl~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~r  165 (378)
                      |+|+|||||||||++++|++                   .++|++++++|++||+||+++||.||++++++++++++|+.
T Consensus        80 ~dg~ImTDSG~fQ~~~yG~v-------------------ev~~~eiv~fQ~~IGsDI~~~LD~pt~p~~~~e~a~~~v~~  140 (630)
T PRK13534         80 FDGPIMTDSGSFQLSVYGDV-------------------EVTNREIIEFQEKIGVDIGTILDIPTPPDVSREKAEEDLEE  140 (630)
T ss_pred             CCCCEEECCCCEEEEEECCE-------------------EECHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf             99857977886377773766-------------------20699999999985799888757789989899999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCH--HHHHHHHHHHHHCCCHHH
Q ss_conf             899999998851358886055402344436689999887642223467664135-67516--789989998985077033
Q gi|254780178|r  166 SLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLA-VGEPQ--EVMLHILSNVLPILPVER  242 (378)
Q Consensus       166 T~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~-~ge~~--~~~~~ii~~~~~~LP~~k  242 (378)
                      |.+|++++.+.    .++.|+||||||.|+|||++||+++.+++|++|+|||.. +.|+.  .++.++|-.++..||+++
T Consensus       141 T~~R~~ea~~~----~~~~l~gpvQGg~y~DLr~~sa~~~~~~~f~~y~iG~~vplme~yry~~l~~~i~~~k~~lp~~~  216 (630)
T PRK13534        141 TLERAKEAIEI----RELALNGTVQGSTYPDLRRKSAELMSKMNFDIYPIGAVVPLMESYRYRDLVDIIINSKMHLPTNK  216 (630)
T ss_pred             HHHHHHHHHHH----HCCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCHHHHHCCHHHHHHHHHHHHHCCCCCC
T ss_conf             99999986520----13646325568872889999999987479877634885056554258999999999973499998


Q ss_pred             HEECCCCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHHH
Q ss_conf             10025410189999998538983662000002332002456210021012322368855986698133688989998868
Q gi|254780178|r  243 PHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDAESHCSALRDYSRAYLHHLL  322 (378)
Q Consensus       243 Pr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t~~g~i~l~~~~~~~d~~pi~~~C~C~~C~~ytraYl~HL~  322 (378)
                      |+||||+|||+.++.+|++|+|+|||+.|..+||+|+++|..|+.+|.+..+.        +|+|++|.+||.+.|+.|-
T Consensus       217 pvHlfG~GhP~~~~~avalG~DlFDsaay~lyA~d~rylt~~gt~~l~~l~~~--------Pc~c~~c~~~tp~el~~m~  288 (630)
T PRK13534        217 PVHLFGAGHPMFFALAVALGCDLFDSASYALYAKDDRYLTPEGTLHLEDLKEF--------PCSCPVCSEYTPKELREMP  288 (630)
T ss_pred             CEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCEECCCCCEEHHHHCCC--------CCCCCCCCCCCHHHHHHCC
T ss_conf             60237888767889999957660205789987148807876444027760027--------7536552657989997388


Q ss_pred             HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             578508999999999999999999999999859989999999
Q gi|254780178|r  323 RVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQT  364 (378)
Q Consensus       323 ~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~  364 (378)
                      +.   ....||+.|||+...++++++|++|++|++|+|+++-
T Consensus       289 ~~---er~~llA~HNL~v~~~Ei~~vrqaI~~G~L~e~ve~r  327 (630)
T PRK13534        289 KE---ERTRLLAEHNLYVIFEEINRIKQAIKEGNLWELVEER  327 (630)
T ss_pred             HH---HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             87---8999999867999999999999999748299999998


No 8  
>pfam01702 TGT Queuine tRNA-ribosyltransferase. This is a family of queuine tRNA-ribosyltransferases EC:2.4.2.29, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine. It catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues.
Probab=100.00  E-value=0  Score=577.34  Aligned_cols=238  Identities=55%  Similarity=0.895  Sum_probs=234.1

Q ss_pred             HHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf             99999987328977996012133221158999999988999999988513588860554023444366899998876422
Q gi|254780178|r  129 EESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKEL  208 (378)
Q Consensus       129 e~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~  208 (378)
                      |++|++|+.|||||+|+||+|||++++++++++||+||++|+++|++++++.++|.||||||||.++|||++|++++.++
T Consensus         1 e~~i~~q~~igsDI~~~lD~~~~~~~~~~~~~~av~rT~~w~~r~~~~~~~~~~~~lfgivqGG~~~dlR~~s~~~l~~~   80 (238)
T pfam01702         1 EESIEIQNKLGSDIIMPLDECTPYPASRERAEKSVERTLRWADRCLEAHKEKSGQALFGIVQGGLYEDLREESAEELAEL   80 (238)
T ss_pred             CCHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCC
T ss_conf             91999999869988998660799899999999999999999999999985488886996157979899999999997448


Q ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCCCCHH
Q ss_conf             23467664135675167899899989850770331002541018999999853898366200000233200245621002
Q gi|254780178|r  209 DLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKIN  288 (378)
Q Consensus       209 ~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t~~g~i~  288 (378)
                      +|+||+|||+++||+++++.++++.+.+.||++|||||||+|+|++|+.+|++|||||||++|+|+||+|+|||++|++|
T Consensus        81 ~~~GyaIgGl~~ge~~~~~~~~l~~~~~~Lp~~kPr~l~G~g~P~~i~~~v~~GiD~FD~~~ptr~Ar~G~alt~~g~~n  160 (238)
T pfam01702        81 DFDGYAIGGLSVGEEKEEMLELVDAVTPLLPEDKPRYLMGVGTPEDILEAVALGVDMFDCVFPTRYARNGRALTFDGTIN  160 (238)
T ss_pred             CCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHCCCCEECCCHHHHHHCCEEEECCCCEE
T ss_conf             99879856877788999999999999855887785640699999999999995888100341379984692784488310


Q ss_pred             HHHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             101232236885598669813368898999886857850899999999999999999999999985998999999999
Q gi|254780178|r  289 LRNARHIDDMRPLDAESHCSALRDYSRAYLHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQE  366 (378)
Q Consensus       289 l~~~~~~~d~~pi~~~C~C~~C~~ytraYl~HL~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~~~  366 (378)
                      |++.+|+.|++||+++|+|++|++|||||||||++++|++|++||++|||++|.+||++||+||++|+|++|+++|.+
T Consensus       161 l~~~~~~~D~~pl~~~C~C~~C~~~sraYl~HL~~~~E~l~~~Llt~HNl~~~~~~~~~iR~aI~~g~~~e~~~~~~~  238 (238)
T pfam01702       161 LKNARYKLDFRPLDPPCDCYTCRNYSRAYLHHLLKAKEMLGSRLLTIHNLHYYLRLMREIREAIEEGTFEEFVEEFLR  238 (238)
T ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC
T ss_conf             301333467876679999832231379999988644635899999999999999999999999985999999999849


No 9  
>TIGR00432 arcsn_tRNA_tgt archaeosine tRNA-ribosyltransferase; InterPro: IPR004804   The archaeosine tRNA-guanine transglycosylase (tgt) differs from the tgt of Escherichia coli and other bacteria in the site of action and the modification that results. It exchanges 7-cyano-7-deazaguanine (preQ0) with guanine at position 15 of archaeal tRNA; this nucleotide is subsequently converted to archaeosine, found exclusively in the archaea. In contrast, bacterial tgt catalyzes the exchange of preQ0 or preQ1 for the guanine base at position 34; this nucleotide is subsequently modified to queuosine (IPR004803 from INTERPRO). Archaeoglobus fulgidus has both enzymes. .
Probab=100.00  E-value=0  Score=581.85  Aligned_cols=332  Identities=23%  Similarity=0.402  Sum_probs=306.0

Q ss_pred             EEEEEECCCCEEEEEEECCEEEECCCEEECCCCCCCCCCCHHHHHHCCCCEEEEEHHHHHHCCCHHHHHHCCCCHHHCCC
Q ss_conf             99997649932799987887540585741068685688688999860998999322665738768998652742011015
Q gi|254780178|r    7 FNLKAVSGSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNAYHLMLRPGAERIARLGGLHKFIRW   86 (378)
Q Consensus         7 F~i~~~~~~aR~G~L~t~~g~i~TP~flpv~t~g~v~~lt~~~l~~~g~~~il~Ntyhl~~~pg~~~i~~~gGlh~fl~~   86 (378)
                      |||+++|+.+|+|.|.|+||.|+||+.|||..+| ++.+-.++++..|+|+++||+|++|..|..+.-+-..|+|+.+.+
T Consensus         1 FEI~~KD~lGR~~~~~T~HG~~~TP~~lPVI~P~-~~~Irae~~K~~GA~~VITN~YIIYR~PelRE~AL~~GVH~~~~~   79 (658)
T TIGR00432         1 FEIKDKDALGRIGILKTEHGRVRTPALLPVINPN-KQFIRAEDVKKFGAEIVITNAYIIYRSPELRERALEDGVHRLLDF   79 (658)
T ss_pred             CCCCCCCCCCCEEEEECCCCCEECCEECCEECCC-CCEEEHHCCCCCCCCEEEECEEEEECCHHHHHHHHHCCCCEEECC
T ss_conf             9654545665226776699713367041036689-862521012677762798320667548135889863476444207


Q ss_pred             CCCEEECCCCCCCCHHHHCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHH
Q ss_conf             77224114543210122102233331021014454158712999999987328977996012133221158999999988
Q gi|254780178|r   87 FKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELS  166 (378)
Q Consensus        87 ~~~ilTDSGgfQv~sl~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT  166 (378)
                      |+|||||||+||...||++                   ++.+-++|+||+.||+||+++||.+|||+.+++++++-++.|
T Consensus        80 D~P~MTDSGSyQL~~YGD~-------------------E~~N~EIieFQ~~IG~Digt~LDIPTPPdvd~~rA~~ele~T  140 (658)
T TIGR00432        80 DGPVMTDSGSYQLSVYGDV-------------------EVKNAEIIEFQERIGSDIGTSLDIPTPPDVDRERAEEELEVT  140 (658)
T ss_pred             CCCEEECCCCEEECCCCCE-------------------EEECCHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf             8864305763110111556-------------------630604565453338725775678622764678899999998


Q ss_pred             HHHHHHHHHHHCCC-CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCH--HHHHHHHHHHHHCCCHHH
Q ss_conf             99999998851358-88605540234443668999988764222346766413-567516--789989998985077033
Q gi|254780178|r  167 LRWAERSLVAFGNQ-PGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGL-AVGEPQ--EVMLHILSNVLPILPVER  242 (378)
Q Consensus       167 ~~w~~~~~~~~~~~-~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl-~~ge~~--~~~~~ii~~~~~~LP~~k  242 (378)
                      +++++++++..+.. -...|.++|||.+|+|||+.||+++++++++-|.||.+ ++.|..  -++.++|-.+...||..+
T Consensus       141 LeRaresiEl~e~rG~~~lLn~~VQGSThpDLRr~~A~e~aklg~diyPIGAVVPLMe~YRyRdla~~il~s~s~LP~~~  220 (658)
T TIGR00432       141 LERARESIELKEERGAKLLLNAVVQGSTHPDLRRYAAKELAKLGVDIYPIGAVVPLMEAYRYRDLAEVILESKSELPTSK  220 (658)
T ss_pred             HHHHHHHHHHHHHCCHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf             89888768876410413332312266554668999999998589715124653056223324777666653110475788


Q ss_pred             HEECCCCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHHH
Q ss_conf             10025410189999998538983662000002332002456210021012322368855986698133688989998868
Q gi|254780178|r  243 PHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDAESHCSALRDYSRAYLHHLL  322 (378)
Q Consensus       243 Pr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t~~g~i~l~~~~~~~d~~pi~~~C~C~~C~~ytraYl~HL~  322 (378)
                      |+||||||||+.++.||++|+|+|||+.|+.||++.++||..|+.+|.+.+-...|     +|+|++|++||+..|.-|-
T Consensus       221 P~HLfGcGHPMlFAlAValGCDLFDSAAYaLYAkDDRyLt~~GT~kLee~~dL~~f-----PCsCpVCs~ytP~EL~~m~  295 (658)
T TIGR00432       221 PVHLFGCGHPMLFALAVALGCDLFDSAAYALYAKDDRYLTVEGTLKLEELKDLKEF-----PCSCPVCSDYTPEELASME  295 (658)
T ss_pred             CEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCCCCCCCCCHHHHHHCC
T ss_conf             74313788377999999716765689999875530123324322336655788607-----8988788898827764127


Q ss_pred             HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             57850899999999999999999999999985998999999999
Q gi|254780178|r  323 RVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQE  366 (378)
Q Consensus       323 ~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~~~  366 (378)
                         .-...+|++.||||+.+++++.|||||++|.+||++++-..
T Consensus       296 ---k~ERerLiAEHNLyVsF~EI~~ikQAI~dgsL~ELVEeRvR  336 (658)
T TIGR00432       296 ---KEERERLIAEHNLYVSFEEIEKIKQAIKDGSLFELVEERVR  336 (658)
T ss_pred             ---HHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHC
T ss_conf             ---77788787674441017788777764304871423545616


No 10 
>TIGR00449 tgt_general tRNA-guanine transglycosylases, various specificities; InterPro: IPR002616 queuosine at position 34 in bacterial tRNAs and This is a family of queuine, archaeosine and general tRNA-ribosyltransferases 2.4.2.29 from EC, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine at position 34 and with archaeosine at position 15 in archaeal tRNAs. In bacterial it catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position , . The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues .; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0006400 tRNA modification, 0008616 queuosine biosynthetic process.
Probab=100.00  E-value=0  Score=538.68  Aligned_cols=364  Identities=49%  Similarity=0.847  Sum_probs=356.5

Q ss_pred             EEEEEECCC--CEEEEEEECCEEEECCCEEECCCCCCCCCCCHHHHHHCCCCEEEEEHHHHHHCCCHHHHHHCCCCHHHC
Q ss_conf             999976499--327999878875405857410686856886889998609989993226657387689986527420110
Q gi|254780178|r    7 FNLKAVSGS--ARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNAYHLMLRPGAERIARLGGLHKFI   84 (378)
Q Consensus         7 F~i~~~~~~--aR~G~L~t~~g~i~TP~flpv~t~g~v~~lt~~~l~~~g~~~il~Ntyhl~~~pg~~~i~~~gGlh~fl   84 (378)
                      |++.++++.  +|+|.+.++||.++||+|+|+++.|+++.+++.+++..+++++++|+||+|++||.+.++..+|+|+|+
T Consensus         1 ~~~~~~~~~~~~~~g~~~~~~g~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~~~g~~~~~   80 (375)
T TIGR00449         1 FELLKTDGHFGARVGLLKTPHGSVETPVFLPVGTLGTVKGLDPEDLKDLGAELVLANTYHLYLRPGEKLVALLGGLHKFL   80 (375)
T ss_pred             CCCCCCCCCCCCCEEEEECCCCCCCCCEEEECCCCHHHCCCCHHHHHHHCCCEEEECEEEEEECCCHHHHHHHCCHHHHH
T ss_conf             95311012222210134326665234200001220000135445664301101110001021044157888631034554


Q ss_pred             CCCCCEEECCCCCCCCHHH-HCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHH
Q ss_conf             1577224114543210122-102233331021014454158712999999987328977996012133221158999999
Q gi|254780178|r   85 RWFKPILTDSGGFQVMSLS-KLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAM  163 (378)
Q Consensus        85 ~~~~~ilTDSGgfQv~sl~-~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv  163 (378)
                      .|+++++|||||||+++++ +..++.++|+.|+++.+|+.+.++|+..+++|..+|+|+++++|+|++++.+.++.++++
T Consensus        81 ~~~~~~~~d~gg~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~p~~~~~~~~~~g~d~~~~~d~~~~~~~~~~~~~~~~  160 (375)
T TIGR00449        81 NWDGPILTDSGGFQVFSLGFDLRKIEEEGVHFKSPLDGSKLFLTPEKSLEIQYALGSDIILPLDECTPPPADYDYAEESL  160 (375)
T ss_pred             HCCCCEEECCCCCEEEEECCHHHHHCCCCCEECCCCCCCEEEECHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHH
T ss_conf             20332011466513332110111100024111054576402205035567566505410110002567763067788888


Q ss_pred             HHHHHHHHHHHHHHCCC-CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCH--HHHHHHHHHHHHCCC
Q ss_conf             98899999998851358-88605540234443668999988764222346766413-567516--789989998985077
Q gi|254780178|r  164 ELSLRWAERSLVAFGNQ-PGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGL-AVGEPQ--EVMLHILSNVLPILP  239 (378)
Q Consensus       164 ~rT~~w~~~~~~~~~~~-~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl-~~ge~~--~~~~~ii~~~~~~LP  239 (378)
                      ++|.+|+++|++.++.. ..+.+|+++|||.++|+|..++..+.+.+++||++||+ +++++.  +.+.+++.++.+.+|
T Consensus       161 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~gg~~~~g~~~~~~~~~~~~~~~~~~~p  240 (375)
T TIGR00449       161 ERTLRWAEESLEYHKRRGGENLLFGIVQGGTYPDLRKLSAKGLLELGFPGYAIGGLVSLGEPKRFEDLLRVLEHTAPLLP  240 (375)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf             88888888888864135744213443236402567777665555337764222310001331468899999987754146


Q ss_pred             HHHHEECCCCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCC-CCCHHHHHHHHCCCCCCCCCCCCCHHHCCCCHHHH
Q ss_conf             03310025410189999998538983662000002332002456-21002101232236885598669813368898999
Q gi|254780178|r  240 VERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTR-FGKINLRNARHIDDMRPLDAESHCSALRDYSRAYL  318 (378)
Q Consensus       240 ~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t~-~g~i~l~~~~~~~d~~pi~~~C~C~~C~~ytraYl  318 (378)
                      .++|||++|+|+|..++.++..|+|+|||+.|++.+++|.+++. .|.+++++..|+.|..|++..|.|++|++|+++|+
T Consensus       241 ~~~p~~~~g~g~p~~~~~~~~~g~d~~d~~~p~~~~~~~~~~~~p~g~~~~~~~~~~~d~~p~~~~c~c~~c~~~~~~~~  320 (375)
T TIGR00449       241 KDKPRYLLGVGTPEDLLDAVSLGVDLFDCVAPTRYARNGTLLTTPEGRLKLKNAKYKDDTRPLDEPCDCYTCKNYSRAYL  320 (375)
T ss_pred             CCCCCCEEECCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEECCCCCEEECCCCCCCCCCCCCCCCCCHHHCCCCHHHH
T ss_conf             42452012057488998888732204555555542147704544643112021100113555554432011113557888


Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf             8868578508999999999999999999999999859989999999998532
Q gi|254780178|r  319 HHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQENWKK  370 (378)
Q Consensus       319 ~HL~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~~~~~~~  370 (378)
                      +||.+++|.++.+|.+.||++++.++++.+|++|.++.|.+|.+++.+.+..
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (375)
T TIGR00449       321 RHLDRANELLGARLASEHNLHFLLRLLEKIRQAILEGRLLSFVEEFLEKYGR  372 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
T ss_conf             7776533444445444445788999999998876314046789999974246


No 11 
>KOG3909 consensus
Probab=100.00  E-value=0  Score=458.30  Aligned_cols=354  Identities=25%  Similarity=0.376  Sum_probs=295.6

Q ss_pred             CEEEEEEECCCCEEEEEEE--CCEEEECCCEEECCCCCCCCCCCHHHHHH-CCCCEEEEEHHHHHHCCCHHHHHH--CCC
Q ss_conf             0499997649932799987--88754058574106868568868899986-099899932266573876899865--274
Q gi|254780178|r    5 FHFNLKAVSGSARLGEIIT--PRGVIKTPAFMPVGTAGTVKAMYFDQVRD-LGADVILGNAYHLMLRPGAERIAR--LGG   79 (378)
Q Consensus         5 ~~F~i~~~~~~aR~G~L~t--~~g~i~TP~flpv~t~g~v~~lt~~~l~~-~g~~~il~Ntyhl~~~pg~~~i~~--~gG   79 (378)
                      |+|.|.++...||+|++..  ++.+.+||+|+.++++|++||||+|.+++ .+..+++.-|..-+.+- .+.+.+  .|+
T Consensus         1 mkfsies~~nggRLgki~~~sg~~~~ktP~fllytk~GsiPhLT~dv~en~~~~pa~~q~tlstL~~~-~e~lt~~neG~   79 (414)
T KOG3909           1 MKFSIESSPNGGRLGKITVGSGNKVLKTPCFLLYTKRGSIPHLTPDVVENQFDIPALYQGTLSTLDRL-EESLTLTNEGT   79 (414)
T ss_pred             CCEEEEECCCCCEEEEEEECCCCEEECCCCEEEECCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHH-HHHHHHHCCCC
T ss_conf             93036533677413334523688001575247652688777678778765317727875428789988-88788754775


Q ss_pred             CHHHCCCCCCEEECCCCCCCCHHHHCCCCCCCCEEEECCC----CCCEEEECHHHHHHHHHHCCCCEEEEE-HHHCCCCC
Q ss_conf             2011015772241145432101221022333310210144----541587129999999873289779960-12133221
Q gi|254780178|r   80 LHKFIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHI----DGSLYRVSPEESVHIQNLLGSDIQMQL-DECLALPA  154 (378)
Q Consensus        80 lh~fl~~~~~ilTDSGgfQv~sl~~~~~~~~~Gv~f~s~~----dG~~~~ltpe~~i~~q~~lg~DI~~~L-D~~~~~~~  154 (378)
                      .++|++.++...+       .++.++......|..=++++    -.++..||.+.||++|.+++||++.+| |.+|+.+.
T Consensus        80 g~kfigmP~~l~~-------lllpdp~splPsgynd~ksv~iwTa~GkvsLtv~~ymeiv~sl~pd~~e~L~D~dts~~~  152 (414)
T KOG3909          80 GKKFIGMPSVLPT-------LLLPDPTSPLPSGYNDQKSVNIWTASGKVSLTVDLYMEIVLSLCPDLVEPLNDTDTSPPG  152 (414)
T ss_pred             CCCCCCCCCCCCE-------EECCCCCCCCCCCCCCCCEEEEEEECCCEECCHHHHHHHHHHHCCCEEECCCCCCCCCHH
T ss_conf             3320057554301-------213798888998777875267784068243139999999996298826404678889556


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHCCCC---CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCHHHHHHH
Q ss_conf             158999999988999999988513588---8605540234443668999988764222346766413567-516789989
Q gi|254780178|r  155 EDKELKRAMELSLRWAERSLVAFGNQP---GKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVG-EPQEVMLHI  230 (378)
Q Consensus       155 ~~k~~~~sv~rT~~w~~~~~~~~~~~~---~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~g-e~~~~~~~i  230 (378)
                      .+||..||||||..|.++|+...+...   ...+||.+.++.-..++-+++.+-......||+..||+.+ ++.++|.++
T Consensus       153 akkRv~KsVDRs~~f~~~ll~~~ekvn~~~~~~i~gg~~~~dr~~~~~~~areq~~~~ygg~~f~gF~~n~~t~~~~l~l  232 (414)
T KOG3909         153 AKKRVPKSVDRSVNFTTELLLALEKVNAFNTTKIFGGVPDLDRQYLTPIFAREQENQLYGGIAFLGFSNNKETDKEMLNL  232 (414)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCEEEEEHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHC
T ss_conf             54444456777889999999987530320345564155674312310356665003565646764204786327777411


Q ss_pred             HHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCC-------------C-CHHHHHHHHCC
Q ss_conf             998985077033100254101899999985389836620000023320024562-------------1-00210123223
Q gi|254780178|r  231 LSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRF-------------G-KINLRNARHID  296 (378)
Q Consensus       231 i~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t~~-------------g-~i~l~~~~~~~  296 (378)
                      ++++...||++|||.+.|..+|.+|+++|..|||+||+.+|+..+.+|.|||..             . .+|+|+++|++
T Consensus       233 le~~~~~Lpedkpr~Isg~~~PleVLecIQrGIDlfdssfpyqate~g~AltfSfd~p~~~d~~skie~~ld~~dekfae  312 (414)
T KOG3909         233 LEADLVGLPEDKPRCISGFESPLEVLECIQRGIDLFDSSFPYQATEAGVALTFSFDPPSKDDLNSKIELGLDMWDEKFAE  312 (414)
T ss_pred             CHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHCCEEEEECCCCCCHHHHHHCEEEEECCCHHHHHH
T ss_conf             27764369988741147889879999999826210246531334534637897268986343443123332142566553


Q ss_pred             CCCCCCCCCCCHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             6885598669813368898999886857850899999999999999999999999985998999999999
Q gi|254780178|r  297 DMRPLDAESHCSALRDYSRAYLHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQE  366 (378)
Q Consensus       297 d~~pi~~~C~C~~C~~ytraYl~HL~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~~~  366 (378)
                      ||+|+..+|.||||++|||||||||++++|++||+||++||+++|..||+.||+|+++++..+..+....
T Consensus       313 Dftpl~sgC~CytC~kytRaYlhHLl~TrELLa~ILLm~HN~yhy~afF~~IReSl~~del~ql~Eli~~  382 (414)
T KOG3909         313 DFTPLQSGCVCYTCRKYTRAYLHHLLQTRELLAWILLMLHNVYHYTAFFQGIRESLQEDELVQLFELIYM  382 (414)
T ss_pred             HCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf             1541115851411435679999999988889999999997399999999999998740304789999986


No 12 
>COG1549 Queuine tRNA-ribosyltransferases, contain PUA domain [Translation, ribosomal structure and biogenesis]
Probab=98.75  E-value=6.1e-09  Score=80.16  Aligned_cols=89  Identities=26%  Similarity=0.456  Sum_probs=74.9

Q ss_pred             HHCCCHHHHEECCCCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHCCCC
Q ss_conf             85077033100254101899999985389836620000023320024562100210123223688559866981336889
Q gi|254780178|r  235 LPILPVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDAESHCSALRDYS  314 (378)
Q Consensus       235 ~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t~~g~i~l~~~~~~~d~~pi~~~C~C~~C~~yt  314 (378)
                      ....|  ++.++.|+..|..|+.+|++|||+||.+..-.+|-+|.+||.+|            .++             +
T Consensus        91 r~~~p--~~~~~s~~~~P~~iplLvYlGvD~fD~~~~~i~~~~g~~ft~~~------------~~~-------------~  143 (519)
T COG1549          91 RYRFP--KALYASGLADPENIPLLVYLGVDLFDDSLAKIYAYEGLYFTPFG------------ISF-------------D  143 (519)
T ss_pred             HCCCC--CCEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCC------------CCH-------------H
T ss_conf             42488--74562487880133568862700440689998874473114565------------530-------------1


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             899988685785089999999999999999999999998599899999999
Q gi|254780178|r  315 RAYLHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQ  365 (378)
Q Consensus       315 raYl~HL~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~~  365 (378)
                      +               ..+.-||..++...++.+|.+|++|++.++++++.
T Consensus       144 ~---------------ed~~~~n~~~l~~~l~~vr~aI~~G~LR~~VE~a~  179 (519)
T COG1549         144 R---------------EDLPRDNVEFLREMLERVRRAIRNGTLRELVEKAL  179 (519)
T ss_pred             H---------------HHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             3---------------33121319999999999999985571999999870


No 13 
>PHA01745 hypothetical protein
Probab=98.24  E-value=4e-06  Score=61.23  Aligned_cols=167  Identities=16%  Similarity=0.157  Sum_probs=106.6

Q ss_pred             HCCCCCCEEECCCCCCCCHHHHCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHH
Q ss_conf             10157722411454321012210223333102101445415871299999998732897799601213322115899999
Q gi|254780178|r   83 FIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRA  162 (378)
Q Consensus        83 fl~~~~~ilTDSGgfQv~sl~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~s  162 (378)
                      =+.|..-.-.||||||+++.+                    +.+++|.+.+--+.+.++.++.||.+.-.....      
T Consensus        30 ~i~W~NeTwVDSGGyQI~~~~--------------------ikis~e~vl~KYK~~~a~a~~sLDiPs~~~~~~------   83 (306)
T PHA01745         30 KITWKNETWVDSGGYQIMLYN--------------------LKISVDDVLDKYKTYNAYAFFSLDIPSIFEPLS------   83 (306)
T ss_pred             CCCCCCCEEECCCCEEEEECC--------------------CCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCC------
T ss_conf             554246534726873898567--------------------645599999997325810389704732348820------


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH----HHHHHHHHCC
Q ss_conf             998899999998851358886055402344436689999887642223467664135675167899----8999898507
Q gi|254780178|r  163 MELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVML----HILSNVLPIL  238 (378)
Q Consensus       163 v~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~----~ii~~~~~~L  238 (378)
                       ++.-...+-.....+.  ...+.++|++ ...+...++++.-++ =.+-.|.||+... ++-.+.    .....+..  
T Consensus        84 -~~Nf~~FEyLYt~~e~--~~~iiPViH~-Y~~~~vd~aiDFYsQ-Ytd~iAFGGivas-Sk~k~l~~a~~~y~yvRk--  155 (306)
T PHA01745         84 -RKNFEYFEYLYTKLEY--IERIIPVIHL-YPVREVDEAIDFYSQ-YTDYIAFGGIVAS-SKLKILIYAFPWYYYIRK--  155 (306)
T ss_pred             -HHHHHHHHHHHHHHHH--HCCEEEEEEC-CCHHHHHHHHHHHHH-HHHHEEECCEECH-HHCCCEEEEEEHHHHHHH--
T ss_conf             -1216899999988763--1215336740-538888888878987-6565024546035-550844677418999998--


Q ss_pred             CHHHHEECCCCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCCCC
Q ss_conf             703310025410189999998538983662000002332002456210
Q gi|254780178|r  239 PVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGK  286 (378)
Q Consensus       239 P~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t~~g~  286 (378)
                       .-+-.|++|+|.|--.  .|-.-+|..|.+-++..|-+|..+-+.|.
T Consensus       156 -~vk~lHvlG~~aPy~r--~vF~~ads~DTsTy~~~~~~r~i~~pdg~  200 (306)
T PHA01745        156 -YVKRLHVLGMSAPYFR--QVFYDADSMDTSTYTVKAIHREIFWFDGT  200 (306)
T ss_pred             -HHHHEEEECCCCHHHH--HHHCCCCCCCCHHEEEECCCCEEEECCCC
T ss_conf             -7554034136872588--77214221443101463145169950895


No 14 
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=97.17  E-value=0.02  Score=36.35  Aligned_cols=220  Identities=16%  Similarity=0.205  Sum_probs=120.8

Q ss_pred             HHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-CCCEEE--EECCCCCCHHHHHHHHHHH
Q ss_conf             9999998732897799601213322115899999998899999998851358-886055--4023444366899998876
Q gi|254780178|r  129 EESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQ-PGKALF--GIVQGGDNINLRSFSAERL  205 (378)
Q Consensus       129 e~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~-~~~~lf--giVqGG~~~dLR~~Sa~~l  205 (378)
                      +..++.-..=|-||+-.||-.-....        ++.+.+.++++    ... .....+  .++   ...|-=..-|+++
T Consensus       100 ~~fv~~~~~~GidifRiFDaLNdv~N--------m~~ai~~vk~~----G~~~q~~i~yt~sPv---ht~~yy~~~ak~l  164 (499)
T PRK12330        100 DRFVEKSAENGMDVFRVFDALNDLRN--------LETSIKAVKKT----GKHAQGTICYTVSPI---HTTEGFVEQAKRL  164 (499)
T ss_pred             HHHHHHHHHCCCCEEEEECCCCCHHH--------HHHHHHHHHHC----CCEEEEEEEEECCCC---CCHHHHHHHHHHH
T ss_conf             99999999769988997244445777--------89999999971----885899999605887---7899999999999


Q ss_pred             HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCC----HHHHHHHHHHHCCCCEEEECCEEECCCCCCC-
Q ss_conf             42223467664135675167899899989850770331002541----0189999998538983662000002332002-
Q gi|254780178|r  206 KELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGV----GTPDDILKSVSYGVDMFDCVMPTRAGRHGLA-  280 (378)
Q Consensus       206 ~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~----G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~-  280 (378)
                      .+++.+..+|--.+.-..-...+++|..++..++++.|.|++.-    -.+...+.||+.|+|+.|++......--+.- 
T Consensus       165 ~~~G~d~i~IKDmAGll~P~~a~~LV~~lk~~~g~d~pI~~HtH~T~G~~~~~~l~AieAGvDivD~A~~~~s~gtsqp~  244 (499)
T PRK12330        165 LDMGCDSICIKDMAALLKPQPAYDLVKGIKEACGPDTRVHVHAHATTGVTLVSLMKAIEAGVDVVDTAISSMSLGPGHNP  244 (499)
T ss_pred             HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCC
T ss_conf             97599989984753467889999999999986389983798517887469999999998499887244543237988997


Q ss_pred             -------CC---CCCCHHHHH----HHHCCCCCCCCCCCCCHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             -------45---621002101----2322368855986698133688989998868578508999999999999999999
Q gi|254780178|r  281 -------FT---RFGKINLRN----ARHIDDMRPLDAESHCSALRDYSRAYLHHLLRVNESLAGMILSWANLAYYQDLMK  346 (378)
Q Consensus       281 -------~t---~~g~i~l~~----~~~~~d~~pi~~~C~C~~C~~ytraYl~HL~~~~E~l~~~Ll~iHNl~~~~~~~~  346 (378)
                             +-   .+--+|+..    +.|..+.++.-....+..+.--++-|.      +++=|..+   -||      ..
T Consensus       245 ~~s~va~L~~t~~d~~ld~~~l~~i~~y~~~vr~~Y~~fe~~~~~~d~~v~~------~q~PGGm~---sNl------~~  309 (499)
T PRK12330        245 TESLVEMLEGTGYTTKLDMDRLLKIKDHFAKVRPRYKEFLSKITGVETEIFK------SQIPGGML---SNM------ES  309 (499)
T ss_pred             HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHC------CCCCHHHH---HHH------HH
T ss_conf             9999999857898899799999999999999999997504667678863503------88956689---999------99


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             99999985998999999999853279986659
Q gi|254780178|r  347 EIRSAIAEDCFVDFAMQTQENWKKGDIPPIFT  378 (378)
Q Consensus       347 ~iR~aI~~g~f~~~~~~~~~~~~~~~~~~~~~  378 (378)
                      ++|+.=..++|.+-.+++-+.++..-.||.-|
T Consensus       310 Ql~~~g~~dr~~eVl~e~~~Vr~~lG~p~lVT  341 (499)
T PRK12330        310 QLKQQGAGDRMKEVLEEVPRVRKDAGYPPLVT  341 (499)
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEC
T ss_conf             99977847679999999999999669986468


No 15 
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=96.49  E-value=0.085  Score=32.21  Aligned_cols=221  Identities=19%  Similarity=0.186  Sum_probs=125.2

Q ss_pred             EEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCE--EE--EE
Q ss_conf             021014454158712999999987328977996012133221158999999988999999988513588860--55--40
Q gi|254780178|r  113 VRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKA--LF--GI  188 (378)
Q Consensus       113 v~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~--lf--gi  188 (378)
                      |.++.+.|-     -.+..++--..=|-|++=.||-.-+.            |..+.+-+|.+.+... -|.  .+  .|
T Consensus        90 vGYrhyaDD-----vVe~Fv~ka~~nGidvfRiFDAlND~------------RNl~~ai~a~kk~G~h-~q~~i~YT~sP  151 (472)
T COG5016          90 VGYRHYADD-----VVEKFVEKAAENGIDVFRIFDALNDV------------RNLKTAIKAAKKHGAH-VQGTISYTTSP  151 (472)
T ss_pred             CCCCCCCHH-----HHHHHHHHHHHCCCCEEEECHHCCCH------------HHHHHHHHHHHHCCCE-EEEEEEECCCC
T ss_conf             365678458-----99999999986487579721110464------------6799999999961863-68998742688


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCC----CHHHHHHHHHHHCCCC
Q ss_conf             234443668999988764222346766413567516789989998985077033100254----1018999999853898
Q gi|254780178|r  189 VQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMG----VGTPDDILKSVSYGVD  264 (378)
Q Consensus       189 VqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G----~G~P~~i~~~v~~GvD  264 (378)
                      |   ...+.-.+-++++.+++.|-.+|-..+.-.+-..-+++|..++..+|  -|.+|+.    .-.+...+.+|+.|+|
T Consensus       152 v---Ht~e~yv~~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~~~--~pv~lHtH~TsG~a~m~ylkAvEAGvD  226 (472)
T COG5016         152 V---HTLEYYVELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKELP--VPVELHTHATSGMAEMTYLKAVEAGVD  226 (472)
T ss_pred             C---CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf             6---52899999999999727987884000026986889999999997459--706985045556179999999981764


Q ss_pred             EEEECCEEECCCCCC--------CCCCCC---CHHHH------------HHHHCCCCCCCCCCCCCHHHCCCCHHHHHHH
Q ss_conf             366200000233200--------245621---00210------------1232236885598669813368898999886
Q gi|254780178|r  265 MFDCVMPTRAGRHGL--------AFTRFG---KINLR------------NARHIDDMRPLDAESHCSALRDYSRAYLHHL  321 (378)
Q Consensus       265 lFD~~~ptr~Ar~G~--------~~t~~g---~i~l~------------~~~~~~d~~pi~~~C~C~~C~~ytraYl~HL  321 (378)
                      ++|++......--+.        +|...+   -+++.            ..+|+.-+.|....-+--+           |
T Consensus       227 ~iDTAisp~S~gtsqP~tEtmv~aL~gt~yDtgld~~~l~~~~~yf~~vrkkY~~~~~~~~~~~d~~i-----------l  295 (472)
T COG5016         227 GIDTAISPLSGGTSQPATETMVAALRGTGYDTGLDLELLEEIAEYFREVRKKYKGLLEPQAKGVDPRI-----------L  295 (472)
T ss_pred             HHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-----------E
T ss_conf             22210045557888995899999962799876536999999999999999987532684014788750-----------6


Q ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             857850899999999999999999999999985998999999999853279986659
Q gi|254780178|r  322 LRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQENWKKGDIPPIFT  378 (378)
Q Consensus       322 ~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~~~~~~~~~~~~~~~  378 (378)
                        ..-+=|.         .+..+.+++|+.=..++|++-.++.-+..++.-+||+-|
T Consensus       296 --i~qvPGG---------MlSNl~sQLkeqnaldK~~eVLeEvprVredlGypPLVT  341 (472)
T COG5016         296 --IYQVPGG---------MLSNLESQLKEQNALDKLEEVLEEVPRVREDLGYPPLVT  341 (472)
T ss_pred             --EEECCHH---------HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             --7637717---------889999999873456679999998488886069998658


No 16 
>pfam00682 HMGL-like HMGL-like. This family contains a diverse set of enzymes. These include various aldolases and a region of pyruvate carboxylase.
Probab=96.29  E-value=0.11  Score=31.44  Aligned_cols=153  Identities=16%  Similarity=0.063  Sum_probs=89.7

Q ss_pred             CHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE-ECCCCCCHHHHHHHHHHH
Q ss_conf             2999999987328977996012133221158999999988999999988513588860554-023444366899998876
Q gi|254780178|r  127 SPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFG-IVQGGDNINLRSFSAERL  205 (378)
Q Consensus       127 tpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfg-iVqGG~~~dLR~~Sa~~l  205 (378)
                      ..+..++.....|.|.+..+.-..+... .+...++.+....-++++++.-++..-..-|+ +-.+-...+.-.+.++.+
T Consensus        68 ~~~~~~e~~~~~g~~~i~i~~~~se~~~-~~n~~~s~~~~l~~~~~~i~~a~~~g~~v~f~~~~~~~~~~~~~~~~~~~~  146 (237)
T pfam00682        68 DIDAAVEAAKGAGADRVHVFIATSDLHR-KYKLNKDREEVADRAVAAVEAARSAGIDVELGCEDAGRTDLAFLIEVVEVA  146 (237)
T ss_pred             HHHHHHHHHHHCCCCEEEEEEECCHHHH-HHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf             4999999999679999999610578789-988578999999999999999998699058840512324788999999999


Q ss_pred             HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECC-----CCHHHHHHHHHHHCCCCEEEECCEEECCCCCCC
Q ss_conf             422234676641356751678998999898507703310025-----410189999998538983662000002332002
Q gi|254780178|r  206 KELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLM-----GVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLA  280 (378)
Q Consensus       206 ~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~-----G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~  280 (378)
                      .+.+++.+.|.--.-...-++..+++..+.+.+|. .|..++     |.+ ....+.|++.|+|.||++.-=.-.|.|.+
T Consensus       147 ~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~-~~i~~H~Hn~~Gla-~aN~l~A~~aG~~~id~si~GlG~~~Gn~  224 (237)
T pfam00682       147 QEAGATRINIADTVGVLTPNEAADLISALKDRVPP-VIIEVHCHNDLGMA-VANSLAAVEAGADRVDGTVNGLGERAGNA  224 (237)
T ss_pred             HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCC-CCEEEEECCCCCHH-HHHHHHHHHHCCCEEEECCCCCCCCCCCH
T ss_conf             86198579736864557989999999999970898-71588744886729-99999999968999987750315542676


Q ss_pred             CC
Q ss_conf             45
Q gi|254780178|r  281 FT  282 (378)
Q Consensus       281 ~t  282 (378)
                      =|
T Consensus       225 ~t  226 (237)
T pfam00682       225 AL  226 (237)
T ss_pred             HH
T ss_conf             49


No 17 
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit; InterPro: IPR005776    This family describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea . The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.; GO: 0008948 oxaloacetate decarboxylase activity, 0006814 sodium ion transport.
Probab=95.57  E-value=0.09  Score=32.02  Aligned_cols=218  Identities=18%  Similarity=0.187  Sum_probs=121.5

Q ss_pred             EEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE-ECCC
Q ss_conf             021014454158712999999987328977996012133221158999999988999999988513588860554-0234
Q gi|254780178|r  113 VRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFG-IVQG  191 (378)
Q Consensus       113 v~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfg-iVqG  191 (378)
                      |-||.|.|--     -|.+|+-.-.=|-||+=+||-   .+++|+            +..++++-++..     + .|||
T Consensus        83 lGYRHYADDV-----Ve~FV~~a~~NG~DVFRiFDA---LND~RN------------l~~ai~a~Kk~g-----~dHvQg  137 (616)
T TIGR01108        83 LGYRHYADDV-----VEAFVKKAVENGLDVFRIFDA---LNDPRN------------LQKAIEAAKKHG-----ADHVQG  137 (616)
T ss_pred             CCCCCCCHHH-----HHHHHHHHHHCCCEEEEEECC---CCCHHH------------HHHHHHHHHHHC-----CCEEEE
T ss_conf             3441584368-----999999999759808995124---588778------------999999999738-----978999


Q ss_pred             CCC--------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCC----HHHHHHHHHH
Q ss_conf             443--------6689999887642223467664135675167899899989850770331002541----0189999998
Q gi|254780178|r  192 GDN--------INLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGV----GTPDDILKSV  259 (378)
Q Consensus       192 G~~--------~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~----G~P~~i~~~v  259 (378)
                      .+.        .|-=-.=|++++++++|-.+|=-.+.-.+-..=++++++++...+ +-|.||+--    -.+.-.+.||
T Consensus       138 ~iSYTtSPvHTl~~yl~la~~L~~~G~DSI~IKDMaGlLTP~~AYELV~alK~~~~-n~pvhLH~H~TtGmA~~AllkA~  216 (616)
T TIGR01108       138 AISYTTSPVHTLEKYLELAKELLEMGVDSICIKDMAGLLTPKVAYELVSALKKEFG-NLPVHLHSHATTGMAEMALLKAI  216 (616)
T ss_pred             EEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CEEEEEECCCCHHHHHHHHHHHH
T ss_conf             97124684367888999999999818860552020046441589999999974239-74688632472337999999888


Q ss_pred             HCCCCEEEECCEEECCCCCCC--------CCCCCC---HHHH------------HHHHCCCCCCCCCCCCCHHHCCCCHH
Q ss_conf             538983662000002332002--------456210---0210------------12322368855986698133688989
Q gi|254780178|r  260 SYGVDMFDCVMPTRAGRHGLA--------FTRFGK---INLR------------NARHIDDMRPLDAESHCSALRDYSRA  316 (378)
Q Consensus       260 ~~GvDlFD~~~ptr~Ar~G~~--------~t~~g~---i~l~------------~~~~~~d~~pi~~~C~C~~C~~ytra  316 (378)
                      +.|+|++|.+.....+--+.-        |...|+   +|+.            ++||..=.++...+.+       || 
T Consensus       217 EAG~d~iDTAisS~S~gtSHPptE~lv~~L~~~gyD~gld~~~L~~i~~YFr~VRkKY~~fle~~~~~~D-------~R-  288 (616)
T TIGR01108       217 EAGADMIDTAISSMSGGTSHPPTETLVAALRGTGYDTGLDIELLLEIADYFRKVRKKYSQFLESQLKGPD-------SR-  288 (616)
T ss_pred             HCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-------CE-
T ss_conf             7078800200552347888874799999970578743102799999999999999999886076777888-------44-


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             99886857850899999999999999999999999985998999999999853279986659
Q gi|254780178|r  317 YLHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQENWKKGDIPPIFT  378 (378)
Q Consensus       317 Yl~HL~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~~~~~~~~~~~~~~~  378 (378)
                         =|+..=  =|+         .+.+|.+++|+-=..+++++=.+|.-+..+.-=+||+-|
T Consensus       289 ---iLv~Qv--PGG---------M~SNL~~QLkEQna~DkLd~VL~EiPrVreDLGYpPLVT  336 (616)
T TIGR01108       289 ---ILVSQV--PGG---------MLSNLESQLKEQNALDKLDEVLEEIPRVREDLGYPPLVT  336 (616)
T ss_pred             ---EEEEEC--CCH---------HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCC
T ss_conf             ---899736--880---------688999999862375578888741574123267656977


No 18 
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=95.13  E-value=0.31  Score=28.45  Aligned_cols=145  Identities=18%  Similarity=0.174  Sum_probs=85.0

Q ss_pred             CCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-CCEEEEEC
Q ss_conf             31021014454158712999999987328977996012133221158999999988999999988513588-86055402
Q gi|254780178|r  111 QGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQP-GKALFGIV  189 (378)
Q Consensus       111 ~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~-~~~lfgiV  189 (378)
                      +.|.|+++.|--     -+..++.-..-|-||+-.||-.-....        ++.+.+-.++    ..... ....|- +
T Consensus        87 N~vGy~~ypd~v-----v~~fv~~~~~~GidifRiFD~LNdv~n--------m~~~~~~v~~----~G~~~e~~i~yt-~  148 (580)
T PRK09282         87 NLLGYRHYADDV-----VEKFVEKAAENGIDVFRIFDALNDVRN--------METAIKAVKK----VGAHAQGTISYT-T  148 (580)
T ss_pred             CCCCCCCCCHHH-----HHHHHHHHHHCCCCEEEEEECCCCHHH--------HHHHHHHHHH----CCCEEEEEEEEE-C
T ss_conf             325644588689-----999999999769978997401232577--------8999999984----598799999971-5


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCC----HHHHHHHHHHHCCCCE
Q ss_conf             344436689999887642223467664135675167899899989850770331002541----0189999998538983
Q gi|254780178|r  190 QGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGV----GTPDDILKSVSYGVDM  265 (378)
Q Consensus       190 qGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~----G~P~~i~~~v~~GvDl  265 (378)
                      ---...|.-..-|+++.+++.+..+|--.+....-+..+++|...++.+  +.|.|++.-    -.+...+.|++.|+|+
T Consensus       149 sP~ht~~yy~~~a~~l~~~G~d~i~iKDmaGll~P~~a~~LV~alk~~~--~lpI~~HtH~t~G~~~a~~l~A~eAGvdi  226 (580)
T PRK09282        149 SPVHTLETWVDLAKQLEEMGCDSICIKDMAGLLTPYAAYELVSALKKEV--DLPVHLHCHATTGLATMTYLKAVEAGVDI  226 (580)
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCCHHHHHHHHHHHHCCCE
T ss_conf             8876389999999999974998899726655789899999999999861--98169982477647999999999848886


Q ss_pred             EEECCEEECC
Q ss_conf             6620000023
Q gi|254780178|r  266 FDCVMPTRAG  275 (378)
Q Consensus       266 FD~~~ptr~A  275 (378)
                      .|++......
T Consensus       227 vD~a~~~~s~  236 (580)
T PRK09282        227 LDTAISSMSM  236 (580)
T ss_pred             EEECCCCCCC
T ss_conf             7001355348


No 19 
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=93.92  E-value=0.57  Score=26.62  Aligned_cols=133  Identities=14%  Similarity=0.130  Sum_probs=76.2

Q ss_pred             HHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf             99999987328977996012133221158999999988999999988513588860554023444366899998876422
Q gi|254780178|r  129 EESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKEL  208 (378)
Q Consensus       129 e~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~  208 (378)
                      +..++....-|-||+-.+|-.-....        ++...+.+++.    .......+.--.---...|--..-++++.+.
T Consensus       108 ~~fv~~~~~~GidvfriFD~LNd~~n--------~~~ai~~vk~~----G~~~~~~i~yt~sp~ht~~yy~~~ak~l~~~  175 (468)
T PRK12581        108 DKFISLSAQNGIDVFRIFDALNDPRN--------IQQALRAVKKT----GKEAQLCIAYTTSPVHTLNYYLSLVKELVEM  175 (468)
T ss_pred             HHHHHHHHHCCCCEEEEECCCCCHHH--------HHHHHHHHHHC----CCEEEEEEEECCCCCCCHHHHHHHHHHHHHC
T ss_conf             99999999759987997314676789--------99999999963----8748999996689755499999999999973


Q ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCC----HHHHHHHHHHHCCCCEEEECCEEECC
Q ss_conf             23467664135675167899899989850770331002541----01899999985389836620000023
Q gi|254780178|r  209 DLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGV----GTPDDILKSVSYGVDMFDCVMPTRAG  275 (378)
Q Consensus       209 ~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~----G~P~~i~~~v~~GvDlFD~~~ptr~A  275 (378)
                      +.+.++|--.+.-.+-...+++|..+...  .+.|.+++.-    -.+...+.||+.|+|+.|++......
T Consensus       176 Gad~I~iKDmaGlL~P~~a~~LV~~lK~~--~~iPI~~HtH~t~Gla~a~~laAieAGaDiVD~Ai~~~s~  244 (468)
T PRK12581        176 GADSICIKDMAGILTPKAAKELVSGIKAM--TNLPLIVHTHATSGISQMTYLAAVEAGADRIDTALSPFSE  244 (468)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHC--CCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             99989984787776889999999999836--7986599825887549999999998199999744645357


No 20 
>KOG2368 consensus
Probab=93.31  E-value=0.48  Score=27.17  Aligned_cols=216  Identities=21%  Similarity=0.292  Sum_probs=120.4

Q ss_pred             EEEECCCEEECCCCCCCCCCCHHHHHHCCCCEEEEEHHH--HHHCCCHHHHHHCCCCHHHCCCCCCEEE-CCCCCCCCHH
Q ss_conf             754058574106868568868899986099899932266--5738768998652742011015772241-1454321012
Q gi|254780178|r   26 GVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNAYH--LMLRPGAERIARLGGLHKFIRWFKPILT-DSGGFQVMSL  102 (378)
Q Consensus        26 g~i~TP~flpv~t~g~v~~lt~~~l~~~g~~~il~Ntyh--l~~~pg~~~i~~~gGlh~fl~~~~~ilT-DSGgfQv~sl  102 (378)
                      |--.-|.++|-.    +|.--.|.|.+.|.+.+-+.+|.  -|..--.+.-+-..|+|+|-+-.-|+|| ..-||+.---
T Consensus        29 GLQnEk~~vpt~----vKveLI~~Lse~Gl~~vEtTSFVSpKWVPQl~D~~ev~k~i~~~~Gv~yPVLtPNlkGf~~Ava  104 (316)
T KOG2368          29 GLQNEKNIVPTE----VKVELIDRLSECGLQVVETTSFVSPKWVPQLADHNEVMKGIRKFPGVSYPVLTPNLKGFEAAVA  104 (316)
T ss_pred             CCCCCCCCCCCH----HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             000257657733----7799999998739724653034574324310446899976522888656411764465899986


Q ss_pred             HHCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-
Q ss_conf             2102233331021014454158712999999987328977996012133221158999999988999999988513588-
Q gi|254780178|r  103 SKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQP-  181 (378)
Q Consensus       103 ~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~-  181 (378)
                      .   . .++-+.|-+-                            .+    .-+.|.+.-+++.+...+++.+++-.+.. 
T Consensus       105 a---G-a~EvavFgaA----------------------------Se----~FslkNiNctiees~~rf~~v~kaA~~~ni  148 (316)
T KOG2368         105 A---G-AEEVAVFGAA----------------------------SE----AFSLKNINCTIEESLKRFMEVLKAAQEHNI  148 (316)
T ss_pred             C---C-CEEEEEEEHH----------------------------HH----HHHHCCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf             5---8-6157742121----------------------------34----542214785489999999999999997497


Q ss_pred             --C---C-EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHCCCHHHHE-ECCCC--HH
Q ss_conf             --8---6-0554023444366899998876422234676641-356751678998999898507703310-02541--01
Q gi|254780178|r  182 --G---K-ALFGIVQGGDNINLRSFSAERLKELDLKGYAIGG-LAVGEPQEVMLHILSNVLPILPVERPH-YLMGV--GT  251 (378)
Q Consensus       182 --~---~-~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgG-l~~ge~~~~~~~ii~~~~~~LP~~kPr-~l~G~--G~  251 (378)
                        +   + .+-.+.||...+.-..+-++.+-+++..-..+|. +.+|-+ -.|.++++.++...|.++.- |-+..  -.
T Consensus       149 ~vRGYVScvvGCPyeG~v~P~kVa~V~k~ly~mGCyEiSLGDTIGvGTp-gtm~~ML~~Vmk~vPa~~LAVH~HDTYGQA  227 (316)
T KOG2368         149 RVRGYVSCVVGCPYEGAVQPSKVAEVVKKLYEMGCYEISLGDTIGVGTP-GTMKRMLDAVMKVVPAEKLAVHCHDTYGQA  227 (316)
T ss_pred             CCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCC-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf             5003788886587668748899999999998478679732661046895-058999999987478788410422017889


Q ss_pred             HHHHHHHHHCCCCEEEECC------EEECCCCCCCCC
Q ss_conf             8999999853898366200------000233200245
Q gi|254780178|r  252 PDDILKSVSYGVDMFDCVM------PTRAGRHGLAFT  282 (378)
Q Consensus       252 P~~i~~~v~~GvDlFD~~~------ptr~Ar~G~~~t  282 (378)
                      ...|+.++.+||...||+.      |+-....|.+-|
T Consensus       228 LaNiL~slqmGi~vvDSsvaGLGGCPYAkGAsGN~AT  264 (316)
T KOG2368         228 LANILVSLQMGIRVVDSSVAGLGGCPYAKGASGNLAT  264 (316)
T ss_pred             HHHHHHHHHHCCEEHHHHCCCCCCCCCCCCCCCCCHH
T ss_conf             9999999981611131111356799755567877317


No 21 
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=93.17  E-value=0.76  Score=25.82  Aligned_cols=133  Identities=17%  Similarity=0.109  Sum_probs=76.3

Q ss_pred             HHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf             99999987328977996012133221158999999988999999988513588860554023444366899998876422
Q gi|254780178|r  129 EESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKEL  208 (378)
Q Consensus       129 e~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~  208 (378)
                      +..++.-..-|-|++-.+|-.....    ..    +...+++++.-.    ...-.+.--.---...|--.+-++++.+.
T Consensus        99 ~~~v~~a~~~Gidv~rifd~lndi~----nl----~~ai~~~k~~G~----~~~~~i~yt~sp~~t~~yyv~~a~~l~~~  166 (463)
T PRK12331         99 ESFVQKSIENGIDIIRIFDALNDVR----NL----QTAVKATKKAGG----HAQVAISYTTSPVHTIDYFVKLAKEMQEI  166 (463)
T ss_pred             HHHHHHHHHCCCCEEEEEECCCHHH----HH----HHHHHHHHHCCC----EEEEEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf             9999999985999788740566467----78----999999997078----69999997258867699999999999964


Q ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCC----HHHHHHHHHHHCCCCEEEECCEEECC
Q ss_conf             23467664135675167899899989850770331002541----01899999985389836620000023
Q gi|254780178|r  209 DLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGV----GTPDDILKSVSYGVDMFDCVMPTRAG  275 (378)
Q Consensus       209 ~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~----G~P~~i~~~v~~GvDlFD~~~ptr~A  275 (378)
                      +.+.+.|--.+....-...+++|...+..+  +.|.+++.-    -.+...+.||+.|+|+.|++......
T Consensus       167 Gad~I~ikD~aGll~P~~~~eLV~aLk~~~--~lpI~~HtH~t~Gla~an~laAieAGaDivD~a~~~~s~  235 (463)
T PRK12331        167 GADSICIKDMAGILTPYVAYELVKCIKENV--TVPLEVHTHATSGIAEMTYLKAIEAGADIIDTAISPFAG  235 (463)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             998899867867768899999999999744--985699836887579999999998499999623535467


No 22 
>PRK12999 pyruvate carboxylase; Reviewed
Probab=91.63  E-value=0.56  Score=26.72  Aligned_cols=149  Identities=17%  Similarity=0.153  Sum_probs=81.8

Q ss_pred             CCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHH---HHHHHHHHHHCCCCCCEEE
Q ss_conf             3310210144541587129999999873289779960121332211589999999889---9999998851358886055
Q gi|254780178|r  110 EQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSL---RWAERSLVAFGNQPGKALF  186 (378)
Q Consensus       110 ~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~---~w~~~~~~~~~~~~~~~lf  186 (378)
                      .+.|-|+++.|--     -+.+++--..-|-||+=+||-.-...    -.+.+++-..   +.++-++.+-.+     +.
T Consensus       617 ~N~vGY~~Ypdnv-----v~~fv~~a~~~GiDvfRiFD~LN~~~----nm~~~i~~v~~~g~~~e~aicyTGd-----i~  682 (1147)
T PRK12999        617 SNAVGYTNYPDNV-----VRAFVREAAAAGIDVFRIFDSLNWVE----NMRVAIDAVRETGKVAEAAICYTGD-----IL  682 (1147)
T ss_pred             CCCCCCCCCCHHH-----HHHHHHHHHHHCCCEEEEECCCCCHH----HHHHHHHHHHHCCCEEEEEEEECCC-----CC
T ss_conf             4445766797379-----99999999983989116731344667----7899999999709889999874257-----77


Q ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCC----HHHHHHHHHHHCC
Q ss_conf             402344436689999887642223467664135675167899899989850770331002541----0189999998538
Q gi|254780178|r  187 GIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGV----GTPDDILKSVSYG  262 (378)
Q Consensus       187 giVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~----G~P~~i~~~v~~G  262 (378)
                      -+..--...|--..-|++|.+++.+-.+|--.+..-.-....++|...+..  .+-|.|++.-    .....++.|++.|
T Consensus       683 dp~~~~~~l~yy~~~a~~l~~~G~~~l~IKDMAGLl~P~aa~~LV~aLk~~--~~lPIhlHtHdTsG~~~at~laA~eAG  760 (1147)
T PRK12999        683 DPARAKYDLDYYVDLAKELEAAGAHILAIKDMAGLLKPAAAYKLVSALKEE--VDLPIHLHTHDTSGNGLATYLAAAEAG  760 (1147)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHH--CCCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             878887669999999999997689889971445468879999999999861--698459843678855899999999859


Q ss_pred             CCEEEECCEEEC
Q ss_conf             983662000002
Q gi|254780178|r  263 VDMFDCVMPTRA  274 (378)
Q Consensus       263 vDlFD~~~ptr~  274 (378)
                      +|+.|++.-...
T Consensus       761 vDiVD~A~ssmS  772 (1147)
T PRK12999        761 VDIVDVAMASMS  772 (1147)
T ss_pred             CCEEECCCHHHC
T ss_conf             998963541102


No 23 
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=90.17  E-value=1  Score=25.02  Aligned_cols=21  Identities=19%  Similarity=0.003  Sum_probs=13.3

Q ss_pred             CHHHHHHHHHHHCCCCEEEEC
Q ss_conf             101899999985389836620
Q gi|254780178|r  249 VGTPDDILKSVSYGVDMFDCV  269 (378)
Q Consensus       249 ~G~P~~i~~~v~~GvDlFD~~  269 (378)
                      .|.-..++....+|.|-+-|.
T Consensus       185 ~G~d~~~~~~l~~Ga~G~is~  205 (292)
T PRK03170        185 SGDDALALPFLALGGVGVISV  205 (292)
T ss_pred             CCCHHHHHHHHHHCCCEEEEE
T ss_conf             584899999999439869984


No 24 
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=89.90  E-value=1.1  Score=24.78  Aligned_cols=119  Identities=17%  Similarity=0.126  Sum_probs=48.6

Q ss_pred             HHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC-CCCCHHHHHHHHHHHHH
Q ss_conf             99999987328977996012133221158999999988999999988513588860554023-44436689999887642
Q gi|254780178|r  129 EESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQ-GGDNINLRSFSAERLKE  207 (378)
Q Consensus       129 e~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVq-GG~~~dLR~~Sa~~l~~  207 (378)
                      .+..+.-+.+|.|.++.+-   |+....     +-+.-.+|.++..++ ...+ -.++-+-+ -|..  +--.-..++++
T Consensus        85 i~~a~~A~~~Gadai~v~p---P~y~~~-----s~~~l~~~~~~ia~a-~~lP-i~lYn~P~~tg~~--l~~~~l~~L~~  152 (284)
T cd00950          85 IELTKRAEKAGADAALVVT---PYYNKP-----SQEGLYAHFKAIAEA-TDLP-VILYNVPGRTGVN--IEPETVLRLAE  152 (284)
T ss_pred             HHHHHHHHHCCCCEEEECC---CCCCCC-----CHHHHHHHHHHHHHC-CCCC-EEEEECCCCCCCC--CCHHHHHHHHC
T ss_conf             9999999983999899626---657897-----999999999999755-5997-7987376411678--88899999847


Q ss_pred             HHHHHHHHHCCCCC-CCHHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCEEEECC
Q ss_conf             22346766413567-5167899899989850770331002541018999999853898366200
Q gi|254780178|r  208 LDLKGYAIGGLAVG-EPQEVMLHILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDMFDCVM  270 (378)
Q Consensus       208 ~~~~G~aIgGl~~g-e~~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~  270 (378)
                      .+    .|-|+--. .+-..+.++    ....+.+ -+.+  .|+-..++.+..+|.|-+-|..
T Consensus       153 ~p----nv~giK~ss~d~~~~~~~----~~~~~~~-~~v~--~G~d~~~~~~l~~Ga~G~i~~~  205 (284)
T cd00950         153 HP----NIVGIKEATGDLDRVSEL----IALCPDD-FAVL--SGDDALTLPFLALGGVGVISVA  205 (284)
T ss_pred             CC----CEEEEECCCCCHHHHHHH----HHHCCCC-CEEE--CCCHHHHHHHHHHCCCEEEEEE
T ss_conf             99----989998588989999999----9866987-5464--4868999999995499699853


No 25 
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=89.28  E-value=1.1  Score=24.66  Aligned_cols=156  Identities=20%  Similarity=0.249  Sum_probs=81.0

Q ss_pred             CCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEE-EH---HHCCCCCCHHHHHHHHHHHH-HHHHHHHHHHCC
Q ss_conf             02233331021014454158712999999987328977996-01---21332211589999999889-999999885135
Q gi|254780178|r  105 LCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQ-LD---ECLALPAEDKELKRAMELSL-RWAERSLVAFGN  179 (378)
Q Consensus       105 ~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~-LD---~~~~~~~~~k~~~~sv~rT~-~w~~~~~~~~~~  179 (378)
                      +++...+|..|-+-.-.....++++..-+..+.+++|-... |+   +..-+.-         +|.- -|++......+.
T Consensus       114 vR~~~p~~~l~aNiGa~~~~~~~~~~~~~av~~i~AdAl~iHlN~~QEl~qpEG---------Dr~f~~~l~~I~~i~~~  184 (351)
T PRK05437        114 VRKVAPDGLLFANIGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEG---------DRDFRGWLDRIAEIVSA  184 (351)
T ss_pred             HHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCHHHHCCCCC---------CCCHHHHHHHHHHHHHH
T ss_conf             998688873886127210143589999999997167815752462454028888---------97788999999999986


Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC------C-----CH---HHH-------HHHHHHHHHCC
Q ss_conf             888605540234443668999988764222346766413567------5-----16---789-------98999898507
Q gi|254780178|r  180 QPGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVG------E-----PQ---EVM-------LHILSNVLPIL  238 (378)
Q Consensus       180 ~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~g------e-----~~---~~~-------~~ii~~~~~~L  238 (378)
                      .+-..+.==|+=|.    ..+.++.+.+.+++++-++|-. |      |     ..   +.+       .+.+..+... 
T Consensus       185 ~~vPVIvKeVG~Gi----s~e~a~~l~~~Gv~~IdVsg~G-GTnf~~IE~~R~~~~~~~~~~~~wGipT~~sL~e~~~~-  258 (351)
T PRK05437        185 LPVPVIVKEVGFGI----SKETAKRLADAGVKAIDVAGAG-GTSWAAVENYRAKQRRLASYFADWGIPTAQSLLEARSA-  258 (351)
T ss_pred             CCCCEEEEECCCCC----CHHHHHHHHHCCCCEEEECCCC-CCCHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHH-
T ss_conf             79988985215788----9999999996799999957998-85579999887102124577773486689999999974-


Q ss_pred             CHHHHEECC-CCHHHHHHHHHHHCCCCEEEECCEEECC
Q ss_conf             703310025-4101899999985389836620000023
Q gi|254780178|r  239 PVERPHYLM-GVGTPDDILKSVSYGVDMFDCVMPTRAG  275 (378)
Q Consensus       239 P~~kPr~l~-G~G~P~~i~~~v~~GvDlFD~~~ptr~A  275 (378)
                      ..+.|.+.. |+-++.|++.++++|.|+.=.+-|...+
T Consensus       259 ~~~~~iiasGGIR~glDi~KaLaLGA~~vgia~p~L~~  296 (351)
T PRK05437        259 LPDLPIIASGGIRTGLDIAKALALGADAVGLAGPFLKA  296 (351)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             79982996278787899999999551077758999999


No 26 
>pfam00701 DHDPS Dihydrodipicolinate synthetase family. This family has a TIM barrel structure.
Probab=87.98  E-value=1.7  Score=23.44  Aligned_cols=119  Identities=20%  Similarity=0.211  Sum_probs=47.7

Q ss_pred             HHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE-CCCCCCHHHHHHHHHHHHH
Q ss_conf             999999873289779960121332211589999999889999999885135888605540-2344436689999887642
Q gi|254780178|r  129 EESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGI-VQGGDNINLRSFSAERLKE  207 (378)
Q Consensus       129 e~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgi-VqGG~~~dLR~~Sa~~l~~  207 (378)
                      .+..+.-+.+|.|-++..-  +.+....      -+.-.++.++..++ ...+ -.++-. -.-|..  +--...+.+++
T Consensus        86 i~~a~~A~~~Gad~i~v~p--P~y~~~~------~~~i~~~~~~va~a-~~lP-i~iYn~P~~tg~~--l~~~~l~~L~~  153 (289)
T pfam00701        86 IHLAQLAEAAGADGVLAVT--PYYNKPS------QEGLYQHFKAIAAA-TDLP-VILYNVPSRTGQD--LTPETIERLAE  153 (289)
T ss_pred             HHHHHHHHHCCCCEEEECC--CCCCCCC------HHHHHHHHHHHHHC-CCCC-EEEEECCCCCCCC--CCHHHHHHHHC
T ss_conf             9999999974999788779--9888999------99999999999831-5997-7997156540336--79999999826


Q ss_pred             HHHHHHHHHCCC--CCCCHHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCEEEECCE
Q ss_conf             223467664135--6751678998999898507703310025410189999998538983662000
Q gi|254780178|r  208 LDLKGYAIGGLA--VGEPQEVMLHILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDMFDCVMP  271 (378)
Q Consensus       208 ~~~~G~aIgGl~--~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~p  271 (378)
                      .+    .|-|+-  .+ +-..+.+++    ...+.   ++..-.|.-..++....+|.|-+-+..+
T Consensus       154 ~~----~i~giK~ss~-~~~~~~~~~----~~~~~---~~~v~~G~d~~~~~~l~~Ga~G~i~~~~  207 (289)
T pfam00701       154 CP----NVVGVKDAVG-DLERMENIR----KRAGP---DFTILSGDDETALSYLSLGADGVISVTS  207 (289)
T ss_pred             CC----CEEEEEECCC-CHHHHHHHH----HHCCC---CCEEECCCHHHHHHHHHCCCCEEEEEHH
T ss_conf             89----9899996998-999999999----96699---8245069489999998668987998415


No 27 
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=87.83  E-value=2.2  Score=22.74  Aligned_cols=46  Identities=28%  Similarity=0.471  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHCCCHHHHEEC--------CCCHHHHHHHHH----HHCCCCEEEECCE
Q ss_conf             899899989850770331002--------541018999999----8538983662000
Q gi|254780178|r  226 VMLHILSNVLPILPVERPHYL--------MGVGTPDDILKS----VSYGVDMFDCVMP  271 (378)
Q Consensus       226 ~~~~ii~~~~~~LP~~kPr~l--------~G~G~P~~i~~~----v~~GvDlFD~~~p  271 (378)
                      -..+++..+....|+++|..+        -|..++++-+..    -+.|+|++||+.-
T Consensus       608 f~lEV~~aVR~~~p~~~Pl~vRiSatDw~~gG~t~edsv~la~~l~~~GvD~IdvSsG  665 (770)
T PRK08255        608 YPLEVFRAVRAVWPADKPMSVRISAHDWVEGGNTPDDAVEIARAFKAAGADMIDVSSG  665 (770)
T ss_pred             HHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf             8999999999867898866999851025689999999999999999749989995788


No 28 
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=87.75  E-value=1.7  Score=23.43  Aligned_cols=18  Identities=22%  Similarity=0.150  Sum_probs=10.7

Q ss_pred             HHHHHHHHHCCCCEEEEE
Q ss_conf             999999873289779960
Q gi|254780178|r  129 EESVHIQNLLGSDIQMQL  146 (378)
Q Consensus       129 e~~i~~q~~lg~DI~~~L  146 (378)
                      .+..+.-+.+|.|-++.+
T Consensus        85 i~la~~A~~~Gadai~v~  102 (296)
T PRK03620         85 IEYAQAAERAGADGILLL  102 (296)
T ss_pred             HHHHHHHHHCCCCEEEEC
T ss_conf             999999998299989966


No 29 
>pfam01070 FMN_dh FMN-dependent dehydrogenase.
Probab=87.58  E-value=1.4  Score=23.94  Aligned_cols=130  Identities=19%  Similarity=0.234  Sum_probs=72.4

Q ss_pred             HHHHHHHHHCCCCEEEE-EHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf             99999987328977996-01213322115899999998899999998851358886055402344436689999887642
Q gi|254780178|r  129 EESVHIQNLLGSDIQMQ-LDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKE  207 (378)
Q Consensus       129 e~~i~~q~~lg~DI~~~-LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~  207 (378)
                      ++.++-.+..|.+..+. +|-.....  +++-.+. ...++|+.+.      .+..    +|-=|.   +..+.|+...+
T Consensus       125 ~~~i~ra~~ag~~al~ltvD~~~~g~--r~~d~r~-~~~i~~l~~~------~~~P----vivKGI---~s~eDA~~a~~  188 (301)
T pfam01070       125 EDLLERAEAAGYKALVLTVDTPVLGN--RERDLRN-GDDLAWLRDQ------WKGP----LVLKGI---LSPEDAKRAVE  188 (301)
T ss_pred             HHHHHHHHHCCCCEEEEECCCCCCCC--CCCCCCC-HHHHHHHHHH------CCCC----EEEECC---CCHHHHHHHHH
T ss_conf             99999999749997999726876577--8532043-9999999986------6998----899828---99999999998


Q ss_pred             HHHHHHHHHCCCCCCC---HHHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEEEECCEEECC
Q ss_conf             2234676641356751---67899899989850770331002-54101899999985389836620000023
Q gi|254780178|r  208 LDLKGYAIGGLAVGEP---QEVMLHILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMFDCVMPTRAG  275 (378)
Q Consensus       208 ~~~~G~aIgGl~~ge~---~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlFD~~~ptr~A  275 (378)
                      .+++|..+++- -|-.   .---.+++..+.+.+..+-|.++ -|+-+..||+.++++|.|..=..-|..+|
T Consensus       189 ~Gv~~I~VSnH-GGRqlD~~~~t~~~L~eI~~~v~~~~~i~~DGGIR~G~DV~KAlALGA~~V~iGRp~l~a  259 (301)
T pfam01070       189 AGVDGIVVSNH-GGRQLDGAPATIDALPEIVAAVGGRIPVLVDGGIRRGTDVLKALALGADAVLLGRPFLYG  259 (301)
T ss_pred             CCCCEEEECCC-CCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCEEEECHHHHHH
T ss_conf             59999996499-854468886799999999998567748996387476268999998089866556899999


No 30 
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=87.35  E-value=2.4  Score=22.40  Aligned_cols=133  Identities=19%  Similarity=0.157  Sum_probs=75.5

Q ss_pred             HHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHH----HHHHHHHCCCCCC-------EEEEECCCCCCHHHHHH
Q ss_conf             999873289779960121332211589999999889999----9998851358886-------05540234443668999
Q gi|254780178|r  132 VHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWA----ERSLVAFGNQPGK-------ALFGIVQGGDNINLRSF  200 (378)
Q Consensus       132 i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~----~~~~~~~~~~~~~-------~lfgiVqGG~~~dLR~~  200 (378)
                      ++.-...|.|.+-.+-     ..|..-.++.+.+|..+.    ++..+.-++..-.       +...+-.|-..++...+
T Consensus        85 ~~~A~~~g~~~i~i~~-----~~Sd~h~~~nl~~t~~e~l~~~~~~i~~a~~~g~~v~~~i~~afg~p~~~~~~~~~l~~  159 (287)
T PRK05692         85 LEAALAAGADEVAVFA-----SASEAFSQKNINCSIAESLARFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVAD  159 (287)
T ss_pred             HHHHHHCCCCEEEEEE-----ECCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCHHHHHH
T ss_conf             7999977989899997-----41799999874799999999999999999976987999874013676468648999999


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHH-HHEEC---CCCHHHHHHHHHHHCCCCEEEECC
Q ss_conf             98876422234676641356751678998999898507703-31002---541018999999853898366200
Q gi|254780178|r  201 SAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVE-RPHYL---MGVGTPDDILKSVSYGVDMFDCVM  270 (378)
Q Consensus       201 Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~-kPr~l---~G~G~P~~i~~~v~~GvDlFD~~~  270 (378)
                      .++.+.+.+.+-+.|.--.-...-.++.+++..+.+..|.. --.|.   +|.+. ...+.++..|++.|||+.
T Consensus       160 ~~~~~~~~Ga~~I~laDT~G~a~P~~v~~~i~~v~~~~~~~~i~~H~Hnd~Gma~-AN~laAv~aGa~~vd~tv  232 (287)
T PRK05692        160 VAERLFALGCDEISLGDTIGVGTPGQVRRVLEAVLAEFPAERLAGHFHDTYGQAL-ANIYASLEEGITVFDASV  232 (287)
T ss_pred             HHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHH-HHHHHHHHHCCCEEEEEC
T ss_conf             9999985799785447655666999999999999986688723567448730699-999999980999898855


No 31 
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=87.16  E-value=2.4  Score=22.51  Aligned_cols=30  Identities=20%  Similarity=0.335  Sum_probs=15.7

Q ss_pred             HHHEECCCC-HHHHHHHHHHHCCCCEEEECC
Q ss_conf             331002541-018999999853898366200
Q gi|254780178|r  241 ERPHYLMGV-GTPDDILKSVSYGVDMFDCVM  270 (378)
Q Consensus       241 ~kPr~l~G~-G~P~~i~~~v~~GvDlFD~~~  270 (378)
                      ++..++-|. +.-..++...++|.|-+-+..
T Consensus       180 ~~~~~~~g~~~~d~~~~~~~~~G~~g~i~~~  210 (296)
T TIGR03249       180 DRLGYLGGMPTAEVTAPAYLPLGVTSYSSAI  210 (296)
T ss_pred             CCCEEEECCCCHHHHHHHHHHCCCCEEEEHH
T ss_conf             9727973897128999999938998996246


No 32 
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=87.14  E-value=1.7  Score=23.40  Aligned_cols=17  Identities=24%  Similarity=0.026  Sum_probs=8.1

Q ss_pred             HHHHHHHHCCCCEEEEE
Q ss_conf             99999873289779960
Q gi|254780178|r  130 ESVHIQNLLGSDIQMQL  146 (378)
Q Consensus       130 ~~i~~q~~lg~DI~~~L  146 (378)
                      +..+.-+.+|.|-+|.+
T Consensus        94 ~~a~~a~~~Gad~~lv~  110 (309)
T cd00952          94 ARTRALLDLGADGTMLG  110 (309)
T ss_pred             HHHHHHHHCCCCEEEEC
T ss_conf             99999984698999988


No 33 
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=86.50  E-value=2.6  Score=22.21  Aligned_cols=116  Identities=14%  Similarity=0.078  Sum_probs=48.5

Q ss_pred             HHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC-CCC--CCHHHHHHHHHHH
Q ss_conf             9999998732897799601213322115899999998899999998851358886055402-344--4366899998876
Q gi|254780178|r  129 EESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIV-QGG--DNINLRSFSAERL  205 (378)
Q Consensus       129 e~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiV-qGG--~~~dLR~~Sa~~l  205 (378)
                      .+..+.-+.+|.|.++.+   +|+.....     -+.-.+|.++..++- .. .-.++=.- -.|  ...|+-    +++
T Consensus        89 i~~a~~a~~~Gad~v~~~---pP~y~~~~-----~~~i~~~f~~va~a~-~~-pi~iYn~P~~tg~~~~~~~l----~~L  154 (294)
T PRK04147         89 QELAKYATELGYDAISAV---TPFYYPFS-----FEEICDYYREIIDSA-DN-PMIVYNIPALTGVNLSLDQF----NEL  154 (294)
T ss_pred             HHHHHHHHHCCCCEEEEC---CCCCCCCC-----HHHHHHHHHHHHHHC-CC-CEEEEECCCCCCCCCCHHHH----HHH
T ss_conf             999999997599889972---78677899-----899999999998504-99-77887567541678899999----999


Q ss_pred             HHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCEEEECC
Q ss_conf             422234676641356-75167899899989850770331002541018999999853898366200
Q gi|254780178|r  206 KELDLKGYAIGGLAV-GEPQEVMLHILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDMFDCVM  270 (378)
Q Consensus       206 ~~~~~~G~aIgGl~~-ge~~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~  270 (378)
                      ++.+    .|-|+-- ..+...+.    .+....|. +-  ++ .|.-..++.+..+|.|-+-|..
T Consensus       155 ~~~~----~i~giK~s~~d~~~~~----~i~~~~~~-~~--v~-~G~d~~~~~~~~~Ga~G~i~~~  208 (294)
T PRK04147        155 FTLP----KIIGVKQTAGDLYQLE----RIRKAFPD-KL--IY-NGFDEMFLSGLLAGADGAIGST  208 (294)
T ss_pred             HCCC----CEEEEEECCCCHHHHH----HHHHHCCC-EE--EE-ECCHHHHHHHHHCCCCEEEECH
T ss_conf             5689----9889992889999999----99974898-49--99-5865879999987996999447


No 34 
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=85.08  E-value=2.8  Score=22.03  Aligned_cols=16  Identities=19%  Similarity=0.152  Sum_probs=9.3

Q ss_pred             HHHHHHHCCCCEEEEE
Q ss_conf             9999873289779960
Q gi|254780178|r  131 SVHIQNLLGSDIQMQL  146 (378)
Q Consensus       131 ~i~~q~~lg~DI~~~L  146 (378)
                      ..+.-+.+|.|.+|.+
T Consensus        86 la~~a~~~Gadav~v~  101 (289)
T cd00951          86 YAQAAEKAGADGILLL  101 (289)
T ss_pred             HHHHHHHCCCCEEEEC
T ss_conf             9999997599999976


No 35 
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=83.89  E-value=3.6  Score=21.31  Aligned_cols=22  Identities=23%  Similarity=0.209  Sum_probs=13.8

Q ss_pred             CHHHHHHHHHHHCCCCEEEECC
Q ss_conf             1018999999853898366200
Q gi|254780178|r  249 VGTPDDILKSVSYGVDMFDCVM  270 (378)
Q Consensus       249 ~G~P~~i~~~v~~GvDlFD~~~  270 (378)
                      .|.-..++....+|.|-+-|..
T Consensus       181 ~G~d~~~~~~l~~G~~G~i~~~  202 (281)
T cd00408         181 SGDDDLLLPALALGADGAISGA  202 (281)
T ss_pred             CCCHHHHHHHHHCCCCCEEECH
T ss_conf             6966889999872898144024


No 36 
>TIGR01418 PEP_synth phosphoenolpyruvate synthase; InterPro: IPR006319   This family represents phosphoenolpyruvate synthase; also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes. ; GO: 0008986 pyruvate water dikinase activity, 0006094 gluconeogenesis.
Probab=83.48  E-value=0.87  Score=25.42  Aligned_cols=73  Identities=23%  Similarity=0.424  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHHHC-----CCCCCCH---------------HHHHHHHHHHHHCC-CHHHHEECCCC--H-HHHHHHH
Q ss_conf             8876422234676641-----3567516---------------78998999898507-70331002541--0-1899999
Q gi|254780178|r  202 AERLKELDLKGYAIGG-----LAVGEPQ---------------EVMLHILSNVLPIL-PVERPHYLMGV--G-TPDDILK  257 (378)
Q Consensus       202 a~~l~~~~~~G~aIgG-----l~~ge~~---------------~~~~~ii~~~~~~L-P~~kPr~l~G~--G-~P~~i~~  257 (378)
                      |++.++.+||||.||+     |.+|-+.               +-.+++|+-++..= -.+|=.=+.|=  . +|+-.-+
T Consensus       770 Ad~f~~~GfDGFSiGSNDLTQLTLgvDRDSelVA~lGYFDErn~AVL~li~~~I~aAk~~G~~vgICGQAPSDyPe~vef  849 (877)
T TIGR01418       770 ADEFAKLGFDGFSIGSNDLTQLTLGVDRDSELVAHLGYFDERNPAVLRLIEMAIKAAKEHGKKVGICGQAPSDYPEVVEF  849 (877)
T ss_pred             HHHHHHHCCCEEEECCCHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHH
T ss_conf             99898508771565751687766420104314330377757687999999999999987399698706888873899999


Q ss_pred             HHHCCCCEE----EECCEEEC
Q ss_conf             985389836----62000002
Q gi|254780178|r  258 SVSYGVDMF----DCVMPTRA  274 (378)
Q Consensus       258 ~v~~GvDlF----D~~~ptr~  274 (378)
                      +|+.|||-.    |+|..|+.
T Consensus       850 LVe~GIDSiSlNPDaV~~t~~  870 (877)
T TIGR01418       850 LVEEGIDSISLNPDAVLKTRL  870 (877)
T ss_pred             HHHCCCCEEEECCCCCHHHHH
T ss_conf             985498769855401088999


No 37 
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=82.98  E-value=3.9  Score=21.07  Aligned_cols=34  Identities=18%  Similarity=0.203  Sum_probs=17.7

Q ss_pred             HHHCCCHHHHEECCCCHHHHHHHHHHHCCCCEEEECC
Q ss_conf             9850770331002541018999999853898366200
Q gi|254780178|r  234 VLPILPVERPHYLMGVGTPDDILKSVSYGVDMFDCVM  270 (378)
Q Consensus       234 ~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~  270 (378)
                      +....|.+ .+.+.|..  ..++....+|.+-+-|..
T Consensus       174 ~~~~~~~~-~~v~~G~d--~~~~~~~~~Ga~G~i~~~  207 (288)
T cd00954         174 IRAASPED-KLVLNGFD--EMLLSALALGADGAIGST  207 (288)
T ss_pred             HHHHCCCC-CEEECCCH--HHHHHHHHCCCCEEEECH
T ss_conf             99976998-24616957--999999986998999576


No 38 
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=81.68  E-value=4.3  Score=20.75  Aligned_cols=152  Identities=20%  Similarity=0.198  Sum_probs=73.2

Q ss_pred             CCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEE-EH---HHCCCCCCHHHHHHHHHHHH-HHHHHHHHHHCCC
Q ss_conf             2233331021014454158712999999987328977996-01---21332211589999999889-9999998851358
Q gi|254780178|r  106 CSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQ-LD---ECLALPAEDKELKRAMELSL-RWAERSLVAFGNQ  180 (378)
Q Consensus       106 ~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~-LD---~~~~~~~~~k~~~~sv~rT~-~w~~~~~~~~~~~  180 (378)
                      +....+|..|.+-.-......+++..-+..+.+++|-... |+   +..-+.-+         |.- .|++......+..
T Consensus       107 R~~~p~~~l~aNiga~~l~~~~~~~~~~ai~~l~AdaL~iHlN~~QE~~~peGD---------r~f~~~~~~I~~l~~~~  177 (326)
T cd02811         107 REAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGD---------RDFRGWLERIEELVKAL  177 (326)
T ss_pred             HHHCCCCEEEEECCCHHHCCCCHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCC---------CCHHHHHHHHHHHHHHC
T ss_conf             875887627863580330456899999999855788578644606540078989---------87778999999999847


Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC------C-----C-----HHHHH-------HHHHHHHHC
Q ss_conf             88605540234443668999988764222346766413567------5-----1-----67899-------899989850
Q gi|254780178|r  181 PGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVG------E-----P-----QEVML-------HILSNVLPI  237 (378)
Q Consensus       181 ~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~g------e-----~-----~~~~~-------~ii~~~~~~  237 (378)
                      +-..+.==|+=|.    -.+.++.+.+.+++++-++|-. |      |     +     .+.+.       +.+..+...
T Consensus       178 ~vPVIvKeVG~Gi----s~eda~~l~~~Gv~~IdVSghG-GTnf~~IE~~R~~d~~~~~~~~l~dwGi~T~~sL~e~~~~  252 (326)
T cd02811         178 SVPVIVKEVGFGI----SRETAKRLADAGVKAIDVAGAG-GTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSA  252 (326)
T ss_pred             CCCEEEEECCCCC----CHHHHHHHHHCCCCEEEECCCC-CCCHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             9985885247899----9999999996799999978999-9753665310156731337889886285569999999973


Q ss_pred             CCHHHHEECC-CCHHHHHHHHHHHCCCCEEEECCEE
Q ss_conf             7703310025-4101899999985389836620000
Q gi|254780178|r  238 LPVERPHYLM-GVGTPDDILKSVSYGVDMFDCVMPT  272 (378)
Q Consensus       238 LP~~kPr~l~-G~G~P~~i~~~v~~GvDlFD~~~pt  272 (378)
                       ..+-|...- |+-++.|++.++++|.|..=-+-|.
T Consensus       253 -~~~~~iiasGGir~g~Dv~KalaLGA~~vgiar~~  287 (326)
T cd02811         253 -LPDLPLIASGGIRNGLDIAKALALGADLVGMAGPF  287 (326)
T ss_pred             -CCCCEEEEECCCCCHHHHHHHHHHCCCHHHHHHHH
T ss_conf             -89981998688787799999999555336527999


No 39 
>PRK13129 consensus
Probab=78.74  E-value=5.3  Score=20.13  Aligned_cols=203  Identities=18%  Similarity=0.151  Sum_probs=96.7

Q ss_pred             CCCEEECCCCCCCCC-CCHHHH---HHCCCCEE-EEEHHHHHHCCCHHHHHHCC--CCHHHCCCCCCEEECCCCCCCCHH
Q ss_conf             585741068685688-688999---86099899-93226657387689986527--420110157722411454321012
Q gi|254780178|r   30 TPAFMPVGTAGTVKA-MYFDQV---RDLGADVI-LGNAYHLMLRPGAERIARLG--GLHKFIRWFKPILTDSGGFQVMSL  102 (378)
Q Consensus        30 TP~flpv~t~g~v~~-lt~~~l---~~~g~~~i-l~Ntyhl~~~pg~~~i~~~g--Glh~fl~~~~~ilTDSGgfQv~sl  102 (378)
                      -++|+|+.+.|-..- .+.+.+   .+.|++++ +.=.|--=.-.|+ +|+++.  .|.+=++.+          +++.+
T Consensus        18 ~~ali~yitaG~P~~e~s~~~~~~l~~~GaDiiEiGiPfSDP~ADGp-vIq~A~~~AL~~G~~~~----------~~~~~   86 (267)
T PRK13129         18 RCALMPFLMAGDPDLETTAEALLILQENGADLIELGIPYSDPLADGP-VIQAAATRALQSGTTLE----------KVLEM   86 (267)
T ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHHCCCCHH----------HHHHH
T ss_conf             95589887071899899999999999779999997998888776589-99999999997698789----------99999


Q ss_pred             -HHCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             -2102233331021014454158712999999987328977996012133221158999999988999999988513588
Q gi|254780178|r  103 -SKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQP  181 (378)
Q Consensus       103 -~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~  181 (378)
                       ...++..+..+-+-.+++ .......|..++--...|.|=++.-|-+.             |....|...|.+. .- .
T Consensus        87 ~~~~r~~~~~PivlM~Y~N-~i~~~G~e~F~~~~~~~GvdGvIipDLP~-------------eE~~~~~~~~~~~-gl-~  150 (267)
T PRK13129         87 LESLKGKLTIPIILFTYYN-PLLNRGMERFCEQAAAAGVAGLVVPDLPL-------------EEAEKLSPIAAER-GI-D  150 (267)
T ss_pred             HHHHHCCCCCCEEEEEEHH-HHHHHHHHHHHHHHHHCCCCEEECCCCCH-------------HHHHHHHHHHHHC-CC-E
T ss_conf             9985434788889986107-89885599999999866987576789998-------------9999999999853-98-1


Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-CC---CHHHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHH
Q ss_conf             860554023444366899998876422234676641356-75---167899899989850770331002-5410189999
Q gi|254780178|r  182 GKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAV-GE---PQEVMLHILSNVLPILPVERPHYL-MGVGTPDDIL  256 (378)
Q Consensus       182 ~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~-ge---~~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~  256 (378)
                      --.|.++    ...+.|.+.+...+. + +-|.++-.++ |.   ..+...+.+..+....  ++|..+ ||+.+|+++-
T Consensus       151 ~I~lvaP----tt~~~Ri~~i~~~~~-g-FiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t--~~Pv~vGFGIs~~e~v~  222 (267)
T PRK13129        151 LILLVAP----TTPAERMKRIAQQSR-G-FTYLVSVTGVTGERSQMENRVESLLQQLRQVT--SKPIAVGFGISGPEQAR  222 (267)
T ss_pred             EEEEECC----CCCHHHHHHHHHCCC-C-EEEEEECCCCCCCCCCCCHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHH
T ss_conf             6899489----996899999981689-8-08987346656765445088999999999834--89817884479999999


Q ss_pred             HHHHCCCCEEE
Q ss_conf             99853898366
Q gi|254780178|r  257 KSVSYGVDMFD  267 (378)
Q Consensus       257 ~~v~~GvDlFD  267 (378)
                      .....|.|-.-
T Consensus       223 ~~~~~~ADGvI  233 (267)
T PRK13129        223 QVREWGADGAI  233 (267)
T ss_pred             HHHHCCCCEEE
T ss_conf             99854999999


No 40 
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=77.20  E-value=4.3  Score=20.74  Aligned_cols=151  Identities=19%  Similarity=0.199  Sum_probs=70.2

Q ss_pred             CCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf             33102101445415871299999998732897799601213322115899999998899999998851358886055402
Q gi|254780178|r  110 EQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIV  189 (378)
Q Consensus       110 ~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiV  189 (378)
                      .+||-|+++.|.-.     ..+++--.+-|-||+-.||-.--. ..-+-.-.+|.++-+-++.++-+-.+     +.-+-
T Consensus       619 aN~VgY~nyPDnVi-----~~Fvkqaa~~GIDvFRiFDsLNwv-~~M~vaidAV~e~gkv~EatiCYTGD-----ildp~  687 (1149)
T COG1038         619 ANGVGYKNYPDNVI-----REFVKQAAKSGIDVFRIFDSLNWV-EQMRVAIDAVREAGKVAEATICYTGD-----ILDPG  687 (1149)
T ss_pred             CCCCCCCCCCHHHH-----HHHHHHHHHCCCCEEEEEHHHCCH-HHCHHHHHHHHHCCCEEEEEEEECCC-----CCCCC
T ss_conf             56567677966899-----999999876696489841001025-43445899998629847998873056-----67877


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHCCCHHHHEECCCC----HHHHHHHHHHHCCCC
Q ss_conf             344436689999887642223467664135-675167899899989850770331002541----018999999853898
Q gi|254780178|r  190 QGGDNINLRSFSAERLKELDLKGYAIGGLA-VGEPQEVMLHILSNVLPILPVERPHYLMGV----GTPDDILKSVSYGVD  264 (378)
Q Consensus       190 qGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~-~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~----G~P~~i~~~v~~GvD  264 (378)
                      .--+.+|--..-|+++.+.+....+|-..+ +..|. .-+.++.+..+..  +-|.|++.-    +.-...+.|+..|+|
T Consensus       688 r~kY~L~YY~~lA~el~~~GaHIlaIKDMAGLLKP~-AA~~Li~aLr~~~--dlPIHlHTHDTsG~~~at~~aA~~AGvD  764 (1149)
T COG1038         688 RKKYTLDYYVKLAKELEKAGAHILAIKDMAGLLKPA-AAYRLISALRETV--DLPIHLHTHDTSGNGVATYLAAVEAGVD  764 (1149)
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEEEHHHHHCCCHH-HHHHHHHHHHHHC--CCCEEEECCCCCCCHHHHHHHHHHCCCC
T ss_conf             644448999999999996677278763334214769-9999999998744--8844875167887189999999983863


Q ss_pred             EEEECCEEEC
Q ss_conf             3662000002
Q gi|254780178|r  265 MFDCVMPTRA  274 (378)
Q Consensus       265 lFD~~~ptr~  274 (378)
                      ..|.++....
T Consensus       765 ivD~A~~sms  774 (1149)
T COG1038         765 IVDVAMASMS  774 (1149)
T ss_pred             HHHHHHHHCC
T ss_conf             6666544214


No 41 
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=74.69  E-value=6.8  Score=19.40  Aligned_cols=29  Identities=14%  Similarity=0.164  Sum_probs=20.2

Q ss_pred             EECCCCHHHHHHHHHHHCCCCEEEECCEE
Q ss_conf             00254101899999985389836620000
Q gi|254780178|r  244 HYLMGVGTPDDILKSVSYGVDMFDCVMPT  272 (378)
Q Consensus       244 r~l~G~G~P~~i~~~v~~GvDlFD~~~pt  272 (378)
                      +...-.|+-..++.+..+|.|-+-|+.+.
T Consensus       174 ~~~v~~G~d~~~~~~l~~Ga~G~i~~~~n  202 (279)
T cd00953         174 DFKVYSGPDSLIFSALRSGLDGSVAAASN  202 (279)
T ss_pred             CCEEECCCHHHHHHHHHCCCEEEEEHHHH
T ss_conf             94785695799999998099799970898


No 42 
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=73.44  E-value=7.3  Score=19.20  Aligned_cols=121  Identities=20%  Similarity=0.202  Sum_probs=54.1

Q ss_pred             HHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE-CCCCCCHHHHHHHHHHHHH
Q ss_conf             999999873289779960121332211589999999889999999885135888605540-2344436689999887642
Q gi|254780178|r  129 EESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGI-VQGGDNINLRSFSAERLKE  207 (378)
Q Consensus       129 e~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgi-VqGG~~~dLR~~Sa~~l~~  207 (378)
                      -+..+.-+.+|.|-++..-  +.|..+..      +-...|.+...++- +.+ ..|+-+ ---|..  +--+-...+++
T Consensus        89 i~lak~a~~~Gad~il~v~--PyY~k~~~------~gl~~hf~~ia~a~-~lP-vilYN~P~~tg~~--l~~e~i~~la~  156 (299)
T COG0329          89 IELAKHAEKLGADGILVVP--PYYNKPSQ------EGLYAHFKAIAEAV-DLP-VILYNIPSRTGVD--LSPETIARLAE  156 (299)
T ss_pred             HHHHHHHHHCCCCEEEEEC--CCCCCCCH------HHHHHHHHHHHHHC-CCC-EEEEECCCCCCCC--CCHHHHHHHHC
T ss_conf             9999999970999999848--97889897------99999999999851-899-8999787524899--99999999827


Q ss_pred             HHHHHHHHHCC--CCCCCHHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCEEEECCEE
Q ss_conf             22346766413--567516789989998985077033100254101899999985389836620000
Q gi|254780178|r  208 LDLKGYAIGGL--AVGEPQEVMLHILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPT  272 (378)
Q Consensus       208 ~~~~G~aIgGl--~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~pt  272 (378)
                      .+    .|-|+  +.| +-+.+.+++..    .+..  .+....|.=...+.+..+|.|-+-|+...
T Consensus       157 ~~----nivgiKd~~g-d~~~~~~~~~~----~~~~--~f~v~~G~d~~~~~~~~~G~~G~is~~~N  212 (299)
T COG0329         157 HP----NIVGVKDSSG-DLDRLEEIIAA----LGDR--DFIVLSGDDELALPALLLGADGVISVTAN  212 (299)
T ss_pred             CC----CEEEEEECCC-CHHHHHHHHHH----CCCC--CEEEEECCHHHHHHHHHCCCCEEEECCCH
T ss_conf             89----8899984788-99999999986----4876--62898266588889986779858841001


No 43 
>PRK13127 consensus
Probab=72.07  E-value=7.9  Score=18.99  Aligned_cols=199  Identities=18%  Similarity=0.171  Sum_probs=96.9

Q ss_pred             CCCEEECCCCCCCCC-CCHHHH---HHCCCCEE-EEEHHHHHHCCCH-------HHHHHCCCCHHHCCCCCCEEECCCCC
Q ss_conf             585741068685688-688999---86099899-9322665738768-------99865274201101577224114543
Q gi|254780178|r   30 TPAFMPVGTAGTVKA-MYFDQV---RDLGADVI-LGNAYHLMLRPGA-------ERIARLGGLHKFIRWFKPILTDSGGF   97 (378)
Q Consensus        30 TP~flpv~t~g~v~~-lt~~~l---~~~g~~~i-l~Ntyhl~~~pg~-------~~i~~~gGlh~fl~~~~~ilTDSGgf   97 (378)
                      -++|+|+.+.|-..- .+.+.+   .+.|++++ |.=.|--=.-.|+       +.++.--.+.+.+.+           
T Consensus        10 ~~alI~yitaG~P~~e~t~~~l~~l~~~GaDiiElGiPfSDP~ADGPvIq~a~~rAL~~G~~~~~~~~~-----------   78 (262)
T PRK13127         10 EGALVPYLVAGDPDPEATLEFVKALVKGGADVIELGIPFSDPVADGPTIQAADVRALSAGMKIDKYFEL-----------   78 (262)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHH-----------
T ss_conf             965898862708998999999999997699999978988887765799999999999769979999999-----------


Q ss_pred             CCCHHHHCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             21012210223333102101445415871299999998732897799601213322115899999998899999998851
Q gi|254780178|r   98 QVMSLSKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAF  177 (378)
Q Consensus        98 Qv~sl~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~  177 (378)
                          +...++..+..+-+.++++ -......|++++--...|.|=.+.-|-+.      +       ....|.+.|.+. 
T Consensus        79 ----~~~~r~~~~~pivlM~Y~N-~i~~~G~e~F~~~~~~~GvdGlIipDLP~------e-------E~~~~~~~~~~~-  139 (262)
T PRK13127         79 ----VKELRVDSSVPLVLMTYYN-PVYRYGVEKFVKKAAEAGVSGLIIPDLPV------E-------EATDLREACKKH-  139 (262)
T ss_pred             ----HHHHHCCCCCCEEEEECCH-HHHHCCHHHHHHHHHHCCCCEEEECCCCH------H-------HHHHHHHHHHHC-
T ss_conf             ----9997456998879996613-88760899999999875997699669997------8-------999999999855-


Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-CC---CHHHHHHHHHHHHHCCCHHHHEEC-CCCHHH
Q ss_conf             3588860554023444366899998876422234676641356-75---167899899989850770331002-541018
Q gi|254780178|r  178 GNQPGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAV-GE---PQEVMLHILSNVLPILPVERPHYL-MGVGTP  252 (378)
Q Consensus       178 ~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~-ge---~~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P  252 (378)
                          +-.+...|.- ...+.|.+.+...+ .+| -|.++-.++ |.   ..+...+.+..+....  +.|..+ ||+.+|
T Consensus       140 ----gi~~I~lvaP-tt~~~Ri~~i~~~a-~gF-iY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t--~~Pv~vGFGI~~~  210 (262)
T PRK13127        140 ----GLDLVFLVAP-TTPEERLKRIDEAS-SGF-VYLVSRLGVTGAREDVEEATFDLLKRARTTC--KNKIAVGFGISKG  210 (262)
T ss_pred             ----CCEEEEEECC-CCCHHHHHHHHHCC-CCE-EEEEECCCCCCCCCCCHHHHHHHHHHHHHCC--CCCEEEEEEECCH
T ss_conf             ----8327998589-99899999998438-981-8998435556876555288999999999617--9984899334889


Q ss_pred             HHHHHHHHCCCCEEE
Q ss_conf             999999853898366
Q gi|254780178|r  253 DDILKSVSYGVDMFD  267 (378)
Q Consensus       253 ~~i~~~v~~GvDlFD  267 (378)
                      +++....+.|.|-.-
T Consensus       211 e~v~~~~~~~aDGvI  225 (262)
T PRK13127        211 EHAEELLDAGADGVI  225 (262)
T ss_pred             HHHHHHHHCCCCEEE
T ss_conf             999999864999999


No 44 
>TIGR01962 NuoD NADH dehydrogenase I, D subunit; InterPro: IPR010219   This entry recognises specifically the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a subunit C/D fusion.; GO: 0016651 oxidoreductase activity acting on NADH or NADPH, 0006118 electron transport.
Probab=70.97  E-value=7.1  Score=19.31  Aligned_cols=108  Identities=22%  Similarity=0.281  Sum_probs=53.4

Q ss_pred             HHHHHHHHCCCCCCC---HHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCCC
Q ss_conf             234676641356751---67899899989850770331002541018999999853898366200000233200245621
Q gi|254780178|r  209 DLKGYAIGGLAVGEP---QEVMLHILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFG  285 (378)
Q Consensus       209 ~~~G~aIgGl~~ge~---~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t~~g  285 (378)
                      .-..+-|||++...|   .. +.+-|.+-++.+|...-- +-..-+-=-|...-..||=..+-...-...-.|-.|=..|
T Consensus       148 ~~~y~R~GGV~~DLPdf~~n-~l~~i~~Fl~~~p~~l~~-~e~Ll~~NrIwk~R~~gVGvv~~~~A~~~G~tG~~LRgsG  225 (408)
T TIGR01962       148 HSAYFRIGGVAEDLPDFMEN-WLEEIREFLEQFPKRLKD-YETLLNENRIWKQRTQGVGVVSAKDALDWGLTGPMLRGSG  225 (408)
T ss_pred             CCCCCCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHCHHHHHHCCCCCEECHHHHHHCCCCCCCHHHCC
T ss_conf             66763458713210345433-899999999861455999-9999872616775215763007699984489864521236


Q ss_pred             C-HHHHHHH----HC-CCCC-CCCCCCCCHHHCCCCHHHHHHHHHCCCH
Q ss_conf             0-0210123----22-3688-5598669813368898999886857850
Q gi|254780178|r  286 K-INLRNAR----HI-DDMR-PLDAESHCSALRDYSRAYLHHLLRVNES  327 (378)
Q Consensus       286 ~-i~l~~~~----~~-~d~~-pi~~~C~C~~C~~ytraYl~HL~~~~E~  327 (378)
                      . +|+++++    |. -||. |...+|+||+         |.+++..||
T Consensus       226 i~~D~RK~~PY~~Y~~~DFdVp~~~~GDcY~---------Ry~~r~~E~  265 (408)
T TIGR01962       226 IDWDIRKEEPYEGYDELDFDVPVGENGDCYD---------RYLLRVLEM  265 (408)
T ss_pred             CCCCCCCCCCCCHHHCCCCCCCCCCCCCCHH---------HHHHHHHHH
T ss_conf             4202566776320202656543188886204---------556678889


No 45 
>pfam06180 CbiK Cobalt chelatase (CbiK). This family consists of several bacterial cobalt chelatase (CbiK) proteins (EC:4.99.1.-).
Probab=70.08  E-value=3.2  Score=21.62  Aligned_cols=64  Identities=19%  Similarity=0.271  Sum_probs=42.3

Q ss_pred             ECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCH---HHHEECCCCHHHHH
Q ss_conf             02344436689999887642223467664135675167899899989850770---33100254101899
Q gi|254780178|r  188 IVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPV---ERPHYLMGVGTPDD  254 (378)
Q Consensus       188 iVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~---~kPr~l~G~G~P~~  254 (378)
                      +|.|-.|.++++.-.+.  +.+|.-..+|- ++..+.+.+.+++..+.+.+|.   +....+||-|+++.
T Consensus        82 ii~G~Ey~~l~~~v~~~--~~~F~~i~~g~-PLL~~~~D~~~v~~al~~~~~~~~~~~a~VlmGHGt~h~  148 (256)
T pfam06180        82 IIPGEEYEKLKREVNKF--SPDFKRIKLGR-PLLDYPEDYEEVVEALKDQIPPLRKDEALVFMGHGTDHH  148 (256)
T ss_pred             EECCHHHHHHHHHHHHH--HCCCCEEEEEC-CCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC
T ss_conf             43747699999999997--53188499731-566886899999999998453336898699981898985


No 46 
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=68.82  E-value=8.7  Score=18.69  Aligned_cols=89  Identities=19%  Similarity=0.256  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             58999999988999999988513588860554023444366899998876422234676641356751678998999898
Q gi|254780178|r  156 DKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVL  235 (378)
Q Consensus       156 ~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~  235 (378)
                      .=++-+..+....|-.++.+.-++.  ..+|..    .-  .-..|++.+.+++...|-|++....     .+.+++.+.
T Consensus        78 lyel~e~~~~p~e~~~~Lke~a~~~--Gi~~~S----SP--fd~~svd~l~~~~~~ayKIaS~E~~-----~~plik~iA  144 (347)
T COG2089          78 LYELYEEAETPLEWHAQLKEYARKR--GIIFFS----SP--FDLTAVDLLESLNPPAYKIASGEIN-----DLPLIKYIA  144 (347)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHC--CEEEEE----CC--CCHHHHHHHHHCCCCEEEECCCCCC-----CHHHHHHHH
T ss_conf             9999998449999999999999872--938981----67--8878899998569983773474335-----758999999


Q ss_pred             HCCCHHHHEEC-CCCHHHHHHHHHHH
Q ss_conf             50770331002-54101899999985
Q gi|254780178|r  236 PILPVERPHYL-MGVGTPDDILKSVS  260 (378)
Q Consensus       236 ~~LP~~kPr~l-~G~G~P~~i~~~v~  260 (378)
                         ..+||..| .|..+-.+|-.+|+
T Consensus       145 ---~~~kPiIlSTGma~~~ei~~av~  167 (347)
T COG2089         145 ---KKGKPIILSTGMATIEEIEEAVA  167 (347)
T ss_pred             ---HCCCCEEEECCCCCHHHHHHHHH
T ss_conf             ---63997799746640777999999


No 47 
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=66.82  E-value=10  Score=18.27  Aligned_cols=137  Identities=11%  Similarity=0.025  Sum_probs=79.3

Q ss_pred             HHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             99998732897799601213322115899999998899999998851358886055402344436689999887642223
Q gi|254780178|r  131 SVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKELDL  210 (378)
Q Consensus       131 ~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~  210 (378)
                      -++.....|.|++-....|+..+.        .++..+++++.    .-  ....|........++.-.+.++.+.+.+.
T Consensus        92 dl~~a~~~gv~~vri~~~~te~d~--------~~~~i~~ak~~----G~--~v~~~~~~s~~~~~e~l~~~a~~~~~~Ga  157 (333)
T TIGR03217        92 DLKAAYDAGARTVRVATHCTEADV--------SEQHIGMAREL----GM--DTVGFLMMSHMTPPEKLAEQAKLMESYGA  157 (333)
T ss_pred             HHHHHHHCCCCEEEEEECCCHHHH--------HHHHHHHHHHC----CC--EEEEEEEECCCCCHHHHHHHHHHHHHCCC
T ss_conf             999999669997898631667888--------99999999976----98--09999750568999999999999985699


Q ss_pred             HHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECC-----CCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCC
Q ss_conf             4676641356751678998999898507703310025-----41018999999853898366200000233200245
Q gi|254780178|r  211 KGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLM-----GVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFT  282 (378)
Q Consensus       211 ~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~-----G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t  282 (378)
                      +.+.|.--.-...-++..+++..+...+.++.|.-++     |. -.-.-+.|++.|+|.+|++.-=.-+|.|.+-|
T Consensus       158 d~I~i~DT~G~~~P~~v~~~v~~l~~~~~~~i~ig~H~HNnlGl-AvANslaAi~aGa~~VD~Ti~GlGe~aGNa~l  233 (333)
T TIGR03217       158 DCVYIVDSAGAMLPDDVRDRVRALKAVLKPETQVGFHAHHNLSL-AVANSIAAIEAGATRIDASLRGLGAGAGNAPL  233 (333)
T ss_pred             CEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCH-HHHHHHHHHHCCCCEEEECCCCCCCCCCCCHH
T ss_conf             99997596446899999999999998629975488986178772-99999999981999997627448898887349


No 48 
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=66.02  E-value=4.5  Score=20.66  Aligned_cols=71  Identities=18%  Similarity=0.457  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCEEEECCEEECCCC
Q ss_conf             98876422234676641356751678998999898507703310025410189999998538983662000002332
Q gi|254780178|r  201 SAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRH  277 (378)
Q Consensus       201 Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~  277 (378)
                      +++++.+.+.||.-|+. ..|.|. .+.+.++.+..++. .+|  +||+--=++|+ +.|+|..++-=-+.-|-+.|
T Consensus       200 ~~~~i~~~~pDGiflSN-GPGDP~-~~~~~i~~vr~l~~-~~P--ifGICLGHQll-alA~Gakt~KmkfGHrG~Nh  270 (356)
T PRK12838        200 SLEDIKNLNPDGIVLSN-GPGDPK-ELQPYLPTIKDLAS-SYP--ILGICLGHQLI-ALALGAETYKLPFGHRGANH  270 (356)
T ss_pred             CCCHHHCCCCCEEEECC-CCCCHH-HHHHHHHHHHHHHC-CCC--EEEECHHHHHH-HHHHCCEEEECCCCCCCCCC
T ss_conf             75402324974899438-998968-87889999999974-988--89974889999-99709748641556688782


No 49 
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=65.82  E-value=5.3  Score=20.15  Aligned_cols=65  Identities=17%  Similarity=0.382  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCEEEECC
Q ss_conf             9887642223467664135675167899899989850770331002541018999999853898366200
Q gi|254780178|r  201 SAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDMFDCVM  270 (378)
Q Consensus       201 Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~  270 (378)
                      +++++.+.+.||..|+. ..|.|.. ..++++.+...+...+|  +||+.-=++++ +.|+|..++-=.+
T Consensus       204 ~~~~I~~~~pDGIflSN-GPGDP~~-~~~~i~~ik~li~~~~P--ifGICLGHQll-alA~Ga~t~Km~f  268 (355)
T PRK12564        204 TAEEILALNPDGVFLSN-GPGDPAA-LDYAIEMIKELLEGKIP--IFGICLGHQLL-ALALGAKTYKMKF  268 (355)
T ss_pred             CHHHHHCCCCCEEEECC-CCCCHHH-HHHHHHHHHHHHCCCCC--EEEECHHHHHH-HHHCCCEECCCCC
T ss_conf             76576414888899679-9999688-79999999998526987--89988879999-9971984420555


No 50 
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=65.57  E-value=11  Score=18.11  Aligned_cols=207  Identities=15%  Similarity=0.092  Sum_probs=99.0

Q ss_pred             EECCCEEECCCCCCCCC-CCHHHHHHC--CCCEE-EEEHHHHHHCCCHHHHHHCCCCHHHCCCCCCEEECCCCCCCCHH-
Q ss_conf             40585741068685688-688999860--99899-93226657387689986527420110157722411454321012-
Q gi|254780178|r   28 IKTPAFMPVGTAGTVKA-MYFDQVRDL--GADVI-LGNAYHLMLRPGAERIARLGGLHKFIRWFKPILTDSGGFQVMSL-  102 (378)
Q Consensus        28 i~TP~flpv~t~g~v~~-lt~~~l~~~--g~~~i-l~Ntyhl~~~pg~~~i~~~gGlh~fl~~~~~ilTDSGgfQv~sl-  102 (378)
                      +.-|+|+|+.+.|-..- .+.+.++.+  +++++ +.=.|--=.-.|+ +|+++.-  +-+.         -|+..+.+ 
T Consensus         2 ~~r~ali~yitaG~P~~e~s~~~l~~l~~~aDiiElGiPfSDPvADGp-vIq~A~~--~Al~---------~g~~~~~i~   69 (247)
T PRK13125          2 ISRPGLGVYLTAGWPNAETFLEAIDGLVGLVDFLELGIPPKNPKYDGP-VIRKAHR--EVSY---------WGLDYWSLL   69 (247)
T ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHH-HHHHHHH--HHHH---------CCCCHHHHH
T ss_conf             988658888718379989999999998647999997998898766609-9999999--9987---------699899999


Q ss_pred             HHCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             21022333310210144541587129999999873289779960121332211589999999889999999885135888
Q gi|254780178|r  103 SKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPG  182 (378)
Q Consensus       103 ~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~  182 (378)
                      ...++..+..+-+.++++-  .....+++++--+..|.|=++..|-+...+          ++...|.+.|.+.  ....
T Consensus        70 ~~~r~~~~~pivlM~Y~N~--~~~g~e~F~~~~~~~GvdGvIipDLP~e~~----------ee~~~~~~~~~~~--gl~~  135 (247)
T PRK13125         70 EEVRKKVGVPTYIMTYLED--YVGSLDDLLNTAKEVGARGVLFPDLLIDFP----------DELEKYVELIRRY--GLAP  135 (247)
T ss_pred             HHHCCCCCCCEEEHHHHHH--HHHHHHHHHHHHHHCCCCEEEECCCCCCCH----------HHHHHHHHHHHHC--CCCE
T ss_conf             9850568998897298899--997699999999985997588338887546----------7899999999976--9846


Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-HHHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHH
Q ss_conf             60554023444366899998876422234676641356751-67899899989850770331002-54101899999985
Q gi|254780178|r  183 KALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEP-QEVMLHILSNVLPILPVERPHYL-MGVGTPDDILKSVS  260 (378)
Q Consensus       183 ~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~-~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~  260 (378)
                      -.|..+    ...+.|.+.+...+. +|-.+..-| ..|.. .....+.+..+..+.+ ++|..+ ||+.+|+++.....
T Consensus       136 I~lvsP----tt~~~ri~~i~~~s~-gFvY~~~~g-vTG~~~~~~~~~~i~~ik~~~~-~~Pv~vGFGI~t~e~v~~~~~  208 (247)
T PRK13125        136 VFFTSP----KFPDRLIRRLSKLSP-LFIYLGLYP-ATGVELPVYVERNIKRVRELVG-DVYLVAGFAIDSPEDAAKALS  208 (247)
T ss_pred             EEEECC----CCCHHHHHHHHHHCC-CEEEEEEEC-CCCCCCCCCHHHHHHHHHHHCC-CCCEEEECCCCCHHHHHHHHH
T ss_conf             999579----981999999998689-779999443-6788773259999999998569-998588328799999999985


Q ss_pred             CCCCEEE
Q ss_conf             3898366
Q gi|254780178|r  261 YGVDMFD  267 (378)
Q Consensus       261 ~GvDlFD  267 (378)
                      .|.|-.-
T Consensus       209 ~~aDGvI  215 (247)
T PRK13125        209 AGADGVV  215 (247)
T ss_pred             CCCCEEE
T ss_conf             5899999


No 51 
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=62.59  E-value=12  Score=17.75  Aligned_cols=20  Identities=15%  Similarity=0.257  Sum_probs=8.0

Q ss_pred             HEECCCCH-HHHHHHHHHHCC
Q ss_conf             10025410-189999998538
Q gi|254780178|r  243 PHYLMGVG-TPDDILKSVSYG  262 (378)
Q Consensus       243 Pr~l~G~G-~P~~i~~~v~~G  262 (378)
                      .|.|.|.+ +|.++-....++
T Consensus       200 v~iLYGGSV~~~N~~~i~~~~  220 (242)
T cd00311         200 VRILYGGSVNPENAAELLAQP  220 (242)
T ss_pred             CCEEECCCCCHHHHHHHHCCC
T ss_conf             548960778988999995689


No 52 
>PRK08318 dihydropyrimidine dehydrogenase; Validated
Probab=61.97  E-value=12  Score=17.68  Aligned_cols=40  Identities=15%  Similarity=0.162  Sum_probs=23.4

Q ss_pred             HHHHHHHHHC-CCHHHHEE-CCCCHHHHHHHHHHHCCCCEEE
Q ss_conf             9899989850-77033100-2541018999999853898366
Q gi|254780178|r  228 LHILSNVLPI-LPVERPHY-LMGVGTPDDILKSVSYGVDMFD  267 (378)
Q Consensus       228 ~~ii~~~~~~-LP~~kPr~-l~G~G~P~~i~~~v~~GvDlFD  267 (378)
                      .+.|..+... --.+.|.- +=|+.+-.|.++.+.+|.+..-
T Consensus       239 Lr~V~~i~~~~~~~~ipIiG~GGI~s~~Da~e~ilaGAsaVQ  280 (413)
T PRK08318        239 LNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQ  280 (413)
T ss_pred             HHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHCCCCEE
T ss_conf             999999986346788377975685989999999982789216


No 53 
>pfam04481 DUF561 Protein of unknown function (DUF561). Protein of unknown function found in a cyanobacterium, and the chloroplasts of algae.
Probab=61.25  E-value=3.6  Score=21.24  Aligned_cols=161  Identities=12%  Similarity=0.091  Sum_probs=72.2

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHH----HHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHH-----HHEECCCCHHHHHHH
Q ss_conf             54023444366899998876422----234676641356751678998999898507703-----310025410189999
Q gi|254780178|r  186 FGIVQGGDNINLRSFSAERLKEL----DLKGYAIGGLAVGEPQEVMLHILSNVLPILPVE-----RPHYLMGVGTPDDIL  256 (378)
Q Consensus       186 fgiVqGG~~~dLR~~Sa~~l~~~----~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~-----kPr~l~G~G~P~~i~  256 (378)
                      ++|..-+..+++--.|.+.=+.+    +||-|-=-|-  --+.++..++...+..+||.-     -|-.|.=--.-..-.
T Consensus        62 lPiCVSaVep~~f~~aV~AGA~lvEIGNfDsFY~qGr--~f~a~eVL~Lt~~Tr~LLP~~~LsVTVPHiL~ld~Qv~LA~  139 (243)
T pfam04481        62 IPICVSAVEPELLYEAVLAGADLVEIGNFDSFYKQGR--VLSVCEIIALVKETRKLLPHTPLCVTIPHILKLKEQINLAK  139 (243)
T ss_pred             CCEEEECCCHHHHHHHHHHCCCEEEECCHHHHHHCCC--EECHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf             9858604797888999982787898645364765476--64499999999999976899844774576356789999999


Q ss_pred             HHHHCCCCEEE-----ECCEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCC--CCCCHHHC---CCCHHHHHHHHHCCC
Q ss_conf             99853898366-----200000233200245621002101232236885598--66981336---889899988685785
Q gi|254780178|r  257 KSVSYGVDMFD-----CVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDA--ESHCSALR---DYSRAYLHHLLRVNE  326 (378)
Q Consensus       257 ~~v~~GvDlFD-----~~~ptr~Ar~G~~~t~~g~i~l~~~~~~~d~~pi~~--~C~C~~C~---~ytraYl~HL~~~~E  326 (378)
                      .++..|+|++-     |+.|+...-.|..-..--++-=..+--+.-.-|+.+  +-++-||-   .+--        +.=
T Consensus       140 ~L~~~GaDiIQTEGgtss~p~~~g~~glIekaapTLAaay~IS~~v~vPVlcASGlS~vT~PmAiaaGA--------sGV  211 (243)
T pfam04481       140 QLESLGIDLIQTEGKITSISKNHCVNDLIEKSASTLASTYEISKHVQLPVICASGLSDVTVPLAFSYGA--------SGI  211 (243)
T ss_pred             HHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHCCC--------CCC
T ss_conf             999818877872898777888842577798875889999999861787667546764214788997487--------710


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             089999999999999999999999998599
Q gi|254780178|r  327 SLAGMILSWANLAYYQDLMKEIRSAIAEDC  356 (378)
Q Consensus       327 ~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~  356 (378)
                      -.|.-.-.+.|.--|...++++++++...+
T Consensus       212 GVGSavn~Lnd~~aMva~vr~l~~al~~s~  241 (243)
T pfam04481       212 GIGSAVSKLNDIEKMVNYISEIKKAISGTR  241 (243)
T ss_pred             CHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             065776500249999999999999973386


No 54 
>pfam12167 DUF3596 Domain of unknown function (DUF3596). This presumed domain is functionally uncharacterized.This domain family is found in bacteria and viruses, and is approximately 90 amino acids in length. The family is found in association with pfam00589.
Probab=58.87  E-value=9.9  Score=18.32  Aligned_cols=32  Identities=25%  Similarity=0.150  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             999999999999999999998599899999999
Q gi|254780178|r  333 LSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQ  365 (378)
Q Consensus       333 l~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~~  365 (378)
                      -|-.|+.....+.++|...|..|+|+ |.+.|-
T Consensus        30 dT~~Nrk~a~~~~~~I~~eI~~G~Fd-Ya~~FP   61 (88)
T pfam12167        30 DTPANRKKAERLLARIEAEIALGTFD-YAEYFP   61 (88)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCC-HHHHCC
T ss_conf             99889999999999999999819651-898792


No 55 
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=58.69  E-value=14  Score=17.31  Aligned_cols=31  Identities=29%  Similarity=0.518  Sum_probs=24.4

Q ss_pred             CCCHHHHHHHHHHHCCCC-------EEEECCEEECCCC
Q ss_conf             541018999999853898-------3662000002332
Q gi|254780178|r  247 MGVGTPDDILKSVSYGVD-------MFDCVMPTRAGRH  277 (378)
Q Consensus       247 ~G~G~P~~i~~~v~~GvD-------lFD~~~ptr~Ar~  277 (378)
                      =|+.+|-|-.....+|.|       +|-|.-|...|+.
T Consensus       215 GGvATPADAALMM~LGadGVFVGSGIFKS~~P~~~A~A  252 (296)
T COG0214         215 GGVATPADAALMMQLGADGVFVGSGIFKSSNPEKRAKA  252 (296)
T ss_pred             CCCCCHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHH
T ss_conf             67688167999998189847865643378998999999


No 56 
>TIGR01235 pyruv_carbox pyruvate carboxylase; InterPro: IPR005930    In the postabsorptive state, blood glucose concentration is kept constant by a combination of glycogenolysis and gluconeogenesis. During prolonged fasting, when hepatic glycogen is exhausted, gluconeogenesis becomes the only source of plasma glucose. Gluconeogenesis (the production of new glucose molecules) occurs mainly in liver and, to a small extent, in kidneys.    Pyruvate carboxylase (6.4.1.1 from EC), a member of the biotin-dependent enzyme family, catalyses the ATP-dependent carboxylation of pyruvate to oxaloacetate, thus playing a crucial role in gluconeogenesis.  ATP + pyruvate + HCO3- = ADP + phosphate + oxaloacetate  Most well characterised forms of active enzyme consist of four identical subunits arranged in a tetrahedron-like structure. Each subunit contains three functional domains: the biotin carboxylation domain, the transcarboxylation domain and the biotin carboxyl carrier domain.; GO: 0004736 pyruvate carboxylase activity, 0006094 gluconeogenesis, 0005737 cytoplasm.
Probab=58.38  E-value=14  Score=17.27  Aligned_cols=224  Identities=20%  Similarity=0.202  Sum_probs=112.5

Q ss_pred             CCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE-
Q ss_conf             3333102101445415871299999998732897799601213322115899999998899999998851358886055-
Q gi|254780178|r  108 IDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALF-  186 (378)
Q Consensus       108 ~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lf-  186 (378)
                      ...+||.|.++.|.-.     +.+++--..-|-||+=.||-+ ++=..-+-.-.||..+-.-.+.+          ..| 
T Consensus       632 RgANaVGYtnYPDNvv-----~~Fv~qa~~~GiD~FRvFDsL-N~l~~l~l~~dAv~~~gkv~EAA----------icYt  695 (1169)
T TIGR01235       632 RGANAVGYTNYPDNVV-----KKFVKQAAQSGIDIFRVFDSL-NWLENLKLGMDAVKEAGKVVEAA----------ICYT  695 (1169)
T ss_pred             HHHHHHCCCCCCHHHH-----HHHHHHHHHCCCEEEECCCCC-CCCCCCHHHHHHHHHCCCEEEEE----------EEEE
T ss_conf             5410000247753489-----999998884683078700111-33210201636777509979999----------7520


Q ss_pred             E-ECCCCC---CHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHCCCHHHHEECCCC---H-HHHHHHH
Q ss_conf             4-023444---36689999887642223467664135-675167899899989850770331002541---0-1899999
Q gi|254780178|r  187 G-IVQGGD---NINLRSFSAERLKELDLKGYAIGGLA-VGEPQEVMLHILSNVLPILPVERPHYLMGV---G-TPDDILK  257 (378)
Q Consensus       187 g-iVqGG~---~~dLR~~Sa~~l~~~~~~G~aIgGl~-~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~---G-~P~~i~~  257 (378)
                      | |.|-+.   +++==..=|++|.+.+....+|=-.+ +..|.. =+.+|.+.. .--+|-|.|++.-   | ---.++.
T Consensus       696 GDil~~~r~KYdL~YYt~lA~eL~~aGaHIL~iKDMAGlLKP~A-Ak~L~~ALr-e~~PD~PiH~HTHDtSG~ava~~~a  773 (1169)
T TIGR01235       696 GDILDPARKKYDLKYYTNLAEELVKAGAHILGIKDMAGLLKPAA-AKLLIKALR-EKIPDLPIHLHTHDTSGAAVASMLA  773 (1169)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEHHHHCCCHHHH-HHHHHHHHH-HCCCCCCEEEECCCCHHHHHHHHHH
T ss_conf             03268889743778899999999970980343010112442899-999999997-3279985686266612689999999


Q ss_pred             HHHCCCCEEEECCEEECCCC------CCCCCCCC-----CHHHHH----HHHCCCCCCCCCCCCC--HHHCCCCHHHHHH
Q ss_conf             98538983662000002332------00245621-----002101----2322368855986698--1336889899988
Q gi|254780178|r  258 SVSYGVDMFDCVMPTRAGRH------GLAFTRFG-----KINLRN----ARHIDDMRPLDAESHC--SALRDYSRAYLHH  320 (378)
Q Consensus       258 ~v~~GvDlFD~~~ptr~Ar~------G~~~t~~g-----~i~l~~----~~~~~d~~pi~~~C~C--~~C~~ytraYl~H  320 (378)
                      ||+.|+|+.|-+.=+...--      +.+-+=.|     -+|+..    +.|.+..+-+-..-.|  ---.-+|--|+| 
T Consensus       774 aveAGvDvvDvAv~smSG~TSQPS~~a~~~aL~G~~~dpgln~~~v~~ls~YWe~~R~~Ya~FEstt~lKsP~~evY~h-  852 (1169)
T TIGR01235       774 AVEAGVDVVDVAVDSMSGLTSQPSLGALVAALEGSERDPGLNVEDVRELSAYWEEVRKLYAAFESTTDLKSPDSEVYLH-  852 (1169)
T ss_pred             HHHCCCCEEHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-
T ss_conf             9875886114567641045003338999997278989888898999898788999974421111036788778543335-


Q ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             68578508999999999999999999999999859989999999
Q gi|254780178|r  321 LLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQT  364 (378)
Q Consensus       321 L~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~  364 (378)
                           ||=|.++   =||.+      +.|.==...+|.+-++.|
T Consensus       853 -----E~PGGQy---tNL~~------QA~~lGLg~~w~~vk~aY  882 (1169)
T TIGR01235       853 -----EIPGGQY---TNLQF------QAKSLGLGDRWEEVKKAY  882 (1169)
T ss_pred             -----CCCCCHH---HHHHH------HHHHCCCHHHHHHHHHHH
T ss_conf             -----7885044---67999------986548312689999999


No 57 
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=58.19  E-value=11  Score=17.98  Aligned_cols=80  Identities=18%  Similarity=0.099  Sum_probs=41.7

Q ss_pred             EEEECC-CCC-CHHHHHHHHHHHHHHHHHHHHHH-CC-CCCCCHHHHHHHHHHHHHCCCHHHHEECC-CCHHHHHHHHHH
Q ss_conf             554023-444-36689999887642223467664-13-56751678998999898507703310025-410189999998
Q gi|254780178|r  185 LFGIVQ-GGD-NINLRSFSAERLKELDLKGYAIG-GL-AVGEPQEVMLHILSNVLPILPVERPHYLM-GVGTPDDILKSV  259 (378)
Q Consensus       185 lfgiVq-GG~-~~dLR~~Sa~~l~~~~~~G~aIg-Gl-~~ge~~~~~~~ii~~~~~~LP~~kPr~l~-G~G~P~~i~~~v  259 (378)
                      +-.++. +.. ..|+..+.++...+.+.+..-.+ |+ ..+-+.+.+..+...    ++...+.... |+.++.+....+
T Consensus       116 ~kvi~e~~~l~~~~~i~~a~~~~~~~GadfvKtstG~~~~~at~~~v~~m~~~----~~~~~~vk~sGGi~~~~~a~~~l  191 (201)
T cd00945         116 LKVILETRGLKTADEIAKAARIAAEAGADFIKTSTGFGGGGATVEDVKLMKEA----VGGRVGVKAAGGIKTLEDALAAI  191 (201)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHH----HCCCCEEECCCCCCCHHHHHHHH
T ss_conf             79996167789999999999999980998798558878898999999999998----28786386358979999999999


Q ss_pred             HCCCCEEEE
Q ss_conf             538983662
Q gi|254780178|r  260 SYGVDMFDC  268 (378)
Q Consensus       260 ~~GvDlFD~  268 (378)
                      ..|.+-+-.
T Consensus       192 ~aGa~~igt  200 (201)
T cd00945         192 EAGADGIGT  200 (201)
T ss_pred             HHCCCEEEC
T ss_conf             828653537


No 58 
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase; InterPro: IPR011284   This entry represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis found in many plant and bacterial species. This enzyme is involved in type II fatty acid biosynthesis, where the individual metabolic transformations are carried out by different enzymes rather than by a single enzyme as occurs in type I fatty acid biosynthesis .   Structural studies show that the enzyme is a tetramer which forms a typical Rossman fold , . Unlike other members of the short-chain dehydrogenase/reductase superfamily, the enzyme undergoes a marked conformational change upon binding of the NADP(H)cofactor. This conformational change aligns the side chains of the catalytic triad at the active site in an active conformation and increases the affinity of the enzyme for its substrate.; GO: 0004316 3-oxoacyl-[acyl-carrier-protein] reductase activity, 0051287 NAD binding, 0006633 fatty acid biosynthetic process.
Probab=57.17  E-value=8.4  Score=18.79  Aligned_cols=54  Identities=20%  Similarity=0.426  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHH------HHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHH
Q ss_conf             89999887642223------46766413567516789989998985077033100254101899999985
Q gi|254780178|r  197 LRSFSAERLKELDL------KGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGVGTPDDILKSVS  260 (378)
Q Consensus       197 LR~~Sa~~l~~~~~------~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~  260 (378)
                      +-+--|+|++.++.      +|| |   ....+..+--++-+.....+|-.+-      |.|+||..+|+
T Consensus       157 ftKSlAkElasRnItVNaVAPGF-I---~TdMT~~L~e~~~~~~l~~IPLgR~------G~pEeVA~~v~  216 (238)
T TIGR01830       157 FTKSLAKELASRNITVNAVAPGF-I---ETDMTDKLSEKVKKAMLSQIPLGRF------GTPEEVANAVA  216 (238)
T ss_pred             HHHHHHHHCCCCCCEEEEECCCC-C---CCCCCHHCCHHHHHHHHHCCCCCCC------CCHHHHHHHHH
T ss_conf             99999986036870588874899-8---9700021698899999852772326------77656999999


No 59 
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=56.63  E-value=15  Score=17.08  Aligned_cols=23  Identities=26%  Similarity=0.322  Sum_probs=8.4

Q ss_pred             HEECCCCHHHHHHHHHHHCCCCE
Q ss_conf             10025410189999998538983
Q gi|254780178|r  243 PHYLMGVGTPDDILKSVSYGVDM  265 (378)
Q Consensus       243 Pr~l~G~G~P~~i~~~v~~GvDl  265 (378)
                      |...+..|....+......|+|.
T Consensus       242 piI~f~kg~~~~l~~~~~~~~d~  264 (347)
T PRK00115        242 PVILFPKGAGELLEAMAETGVDA  264 (347)
T ss_pred             CEEEECCCCHHHHHHHHHCCCCE
T ss_conf             87996389605689998569988


No 60 
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=56.61  E-value=15  Score=17.08  Aligned_cols=148  Identities=15%  Similarity=0.173  Sum_probs=72.4

Q ss_pred             HCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             10223333102101445415871299999998732897799601213322115899999998899999998851358886
Q gi|254780178|r  104 KLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGK  183 (378)
Q Consensus       104 ~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~  183 (378)
                      .+........+||-+..+.+. ++ ++.++-.+..|...++. +.++|....+.    +- ..++|+.+      ..+..
T Consensus       109 ei~~~~~~~~wfQLY~~~d~~-~~-~~li~rA~~aG~~al~l-TvD~p~~g~R~----~w-~~i~~l~~------~~~~p  174 (299)
T cd02809         109 EVAAAAPGPRWFQLYVPRDRE-IT-EDLLRRAEAAGYKALVL-TVDTPVLGRRL----TW-DDLAWLRS------QWKGP  174 (299)
T ss_pred             HHHHHCCCCEEEEEECCCCHH-HH-HHHHHHHHHCCCCEEEE-ECCCCCCCCCC----CH-HHHHHHHH------HCCCC
T ss_conf             999744898467764369999-99-99999999859998999-70589878879----99-99999998------66998


Q ss_pred             EEE-EECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC---CHHHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHH
Q ss_conf             055-402344436689999887642223467664135675---167899899989850770331002-541018999999
Q gi|254780178|r  184 ALF-GIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGE---PQEVMLHILSNVLPILPVERPHYL-MGVGTPDDILKS  258 (378)
Q Consensus       184 ~lf-giVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge---~~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~  258 (378)
                      .+. ||        +..+-|+...+.+++|..++. +-|-   ...--.+++..+.+.+-..-|.++ -|+-+-.||+.+
T Consensus       175 ~i~KGi--------~~~~DA~~a~~~G~dgI~VSN-HGGRqlD~~p~~i~~L~~i~~~v~~~~~v~~DgGvR~G~Dv~KA  245 (299)
T cd02809         175 LILKGI--------LTPEDALRAVDAGADGIVVSN-HGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKA  245 (299)
T ss_pred             EEEECC--------CCHHHHHHHHHCCCCEEEECC-CCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHH
T ss_conf             799727--------889999999985998899728-87333688877899999999985467289971884753689999


Q ss_pred             HHCCCCEEEECCEEEC
Q ss_conf             8538983662000002
Q gi|254780178|r  259 VSYGVDMFDCVMPTRA  274 (378)
Q Consensus       259 v~~GvDlFD~~~ptr~  274 (378)
                      ++||.|..=.-=|..+
T Consensus       246 laLGA~~V~iGRp~l~  261 (299)
T cd02809         246 LALGADAVLIGRPFLY  261 (299)
T ss_pred             HHCCCCEEEECHHHHH
T ss_conf             9769988987789999


No 61 
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=56.60  E-value=15  Score=17.08  Aligned_cols=138  Identities=16%  Similarity=0.135  Sum_probs=74.8

Q ss_pred             CHHHHHHHHHHCCC--CEEEEEHH-HCCCCCCHH-HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf             29999999873289--77996012-133221158-999999988999999988513588860554023444366899998
Q gi|254780178|r  127 SPEESVHIQNLLGS--DIQMQLDE-CLALPAEDK-ELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSA  202 (378)
Q Consensus       127 tpe~~i~~q~~lg~--DI~~~LD~-~~~~~~~~k-~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa  202 (378)
                      ..++|++..+.+.+  |.++ +.. |+....-+. ...+.+++..++..+.....  .....+|-=+---...+.-..-+
T Consensus       146 ~~~Dy~~~~~~l~~~aDy~~-iNiSsPNt~glr~lq~~~~l~~ll~~v~~~~~~~--~~~~Pi~vKlsPD~~~~~i~~i~  222 (327)
T cd04738         146 AVEDYVIGVRKLGPYADYLV-VNVSSPNTPGLRDLQGKEALRELLTAVKEERNKL--GKKVPLLVKIAPDLSDEELEDIA  222 (327)
T ss_pred             HHHHHHHHHHHHCCCCCEEE-EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC--CCCCCEEEEECCCCCHHHHHHHH
T ss_conf             89999999998535577899-9546889845100268899999999999999853--77886699817997667899999


Q ss_pred             HHHHHHHHHHHHH-------------------HCCCCCCCHHHHHHHHHHHHHCCCHHHHEECC-CCHHHHHHHHHHHCC
Q ss_conf             8764222346766-------------------41356751678998999898507703310025-410189999998538
Q gi|254780178|r  203 ERLKELDLKGYAI-------------------GGLAVGEPQEVMLHILSNVLPILPVERPHYLM-GVGTPDDILKSVSYG  262 (378)
Q Consensus       203 ~~l~~~~~~G~aI-------------------gGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~-G~G~P~~i~~~v~~G  262 (378)
                      +.+.+.+++|+.+                   ||++.-.-++.-.++|..+...++.+-|.--. |+-+++|..+.+..|
T Consensus       223 ~~~~~~g~dGvi~tNTt~~r~~~~~~~~~~~~GGlSG~pl~~~s~~~v~~v~~~~~~~~pIIgvGGI~s~~Da~e~i~aG  302 (327)
T cd04738         223 DVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAG  302 (327)
T ss_pred             HHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCC
T ss_conf             99997399789995885554212456555666863640678999999999999749998199988979999999999869


Q ss_pred             CCEEE
Q ss_conf             98366
Q gi|254780178|r  263 VDMFD  267 (378)
Q Consensus       263 vDlFD  267 (378)
                      .|++-
T Consensus       303 AslVQ  307 (327)
T cd04738         303 ASLVQ  307 (327)
T ss_pred             CCHHH
T ss_conf             96998


No 62 
>PRK00685 metal-dependent hydrolase; Provisional
Probab=56.47  E-value=15  Score=17.07  Aligned_cols=13  Identities=31%  Similarity=0.340  Sum_probs=6.5

Q ss_pred             HHHHHCCCCEEEE
Q ss_conf             9987328977996
Q gi|254780178|r  133 HIQNLLGSDIQMQ  145 (378)
Q Consensus       133 ~~q~~lg~DI~~~  145 (378)
                      ++-+..+||+++.
T Consensus       151 ~i~~~~~pDlall  163 (228)
T PRK00685        151 LIGELHQPDIALL  163 (228)
T ss_pred             HHHHHCCCCEEEE
T ss_conf             9776559969999


No 63 
>pfam05690 ThiG Thiazole biosynthesis protein ThiG. This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway.
Probab=56.29  E-value=15  Score=17.05  Aligned_cols=115  Identities=25%  Similarity=0.349  Sum_probs=59.5

Q ss_pred             CHHHHHHH----HHHCCCCEE---EEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHH
Q ss_conf             29999999----873289779---96012133221158999999988999999988513588860554023444366899
Q gi|254780178|r  127 SPEESVHI----QNLLGSDIQ---MQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRS  199 (378)
Q Consensus       127 tpe~~i~~----q~~lg~DI~---~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~  199 (378)
                      |.++.++.    .+.++.|++   +.-|+-+-.+++.+        |.+-++...+     ++=..++-+    ..|+-.
T Consensus        73 tA~EAVr~A~laRE~~~t~wIKLEVi~D~~~LlPD~~e--------tl~Aae~Lv~-----eGF~VlpY~----~~D~v~  135 (246)
T pfam05690        73 TAEEAVRTARLAREAFGTNWIKLEVIGDSKTLLPDPIE--------TLKAAEILVK-----EGFTVLPYT----TDDPVL  135 (246)
T ss_pred             CHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHH--------HHHHHHHHHH-----CCCEEEEEC----CCCHHH
T ss_conf             89999999999999709974899982698877988789--------9999999997-----899898861----799899


Q ss_pred             HHHHHHHHHHH-----HHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEE
Q ss_conf             99887642223-----467664135675167899899989850770331002-54101899999985389836
Q gi|254780178|r  200 FSAERLKELDL-----KGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMF  266 (378)
Q Consensus       200 ~Sa~~l~~~~~-----~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlF  266 (378)
                        ++.+.+.+.     -|=.||. ..|-......++|   .+.+  +-|..+ -|+|.|-+-..+.++|.|-.
T Consensus       136 --akrLed~Gc~avMPlgsPIGS-g~Gl~n~~~l~~i---~e~~--~vPvIVDAGiG~pS~Aa~aMElG~DaV  200 (246)
T pfam05690       136 --ARRLEEAGCAAVMPLGAPIGS-GLGLRNPENLRII---IEEA--DVPVIVDAGIGTPSDAAQAMELGADAV  200 (246)
T ss_pred             --HHHHHHCCCEEEEECCCCCCC-CCCCCCHHHHHHH---HHHC--CCCEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf             --999987598498622440136-8886899999999---9967--998898489896788999997456777


No 64 
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=56.09  E-value=15  Score=17.03  Aligned_cols=115  Identities=27%  Similarity=0.373  Sum_probs=57.8

Q ss_pred             CHHHHHHHH----HHCCCCEE---EEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHH
Q ss_conf             299999998----73289779---96012133221158999999988999999988513588860554023444366899
Q gi|254780178|r  127 SPEESVHIQ----NLLGSDIQ---MQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRS  199 (378)
Q Consensus       127 tpe~~i~~q----~~lg~DI~---~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~  199 (378)
                      |.|+.+..-    +.++.|++   +.-|..+-.++..+        |.+-++...+     ++=..++-+    +.|+-.
T Consensus        81 taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~e--------tl~Aae~Lv~-----eGF~VlPY~----~dD~v~  143 (262)
T COG2022          81 TAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIE--------TLKAAEQLVK-----EGFVVLPYT----TDDPVL  143 (262)
T ss_pred             CHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHH--------HHHHHHHHHH-----CCCEEEECC----CCCHHH
T ss_conf             89999999999999706984899993687654887578--------9999999986-----798885036----887899


Q ss_pred             HHHHHHHHHHH-----HHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEE
Q ss_conf             99887642223-----467664135675167899899989850770331002-54101899999985389836
Q gi|254780178|r  200 FSAERLKELDL-----KGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMF  266 (378)
Q Consensus       200 ~Sa~~l~~~~~-----~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlF  266 (378)
                        ++.+.+.+.     -|=.||. ..|-......+++   .+..  +-|..+ -|+|.|.+-..+.++|+|-.
T Consensus       144 --arrLee~GcaavMPl~aPIGS-g~G~~n~~~l~ii---ie~a--~VPviVDAGiG~pSdAa~aMElG~DaV  208 (262)
T COG2022         144 --ARRLEEAGCAAVMPLGAPIGS-GLGLQNPYNLEII---IEEA--DVPVIVDAGIGTPSDAAQAMELGADAV  208 (262)
T ss_pred             --HHHHHHCCCEEECCCCCCCCC-CCCCCCHHHHHHH---HHHC--CCCEEEECCCCCHHHHHHHHHHCCCEE
T ss_conf             --999986496686335665667-8675788999999---9738--998898679897668899986055432


No 65 
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=55.63  E-value=16  Score=16.98  Aligned_cols=115  Identities=26%  Similarity=0.364  Sum_probs=59.4

Q ss_pred             CHHHHHHH----HHHCCCCEE---EEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHH
Q ss_conf             29999999----873289779---96012133221158999999988999999988513588860554023444366899
Q gi|254780178|r  127 SPEESVHI----QNLLGSDIQ---MQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRS  199 (378)
Q Consensus       127 tpe~~i~~----q~~lg~DI~---~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~  199 (378)
                      |.|+.++.    .+.++.|++   +.-|+-+-.+++.+        |.+-++...+     ++=..++-+    ..|+-.
T Consensus        74 ta~EAvr~A~laRE~~~t~~IKLEVi~D~~~LlPD~~e--------Tl~Aae~Lv~-----~GF~VlpY~----~~D~v~  136 (248)
T cd04728          74 TAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIE--------TLKAAEILVK-----EGFTVLPYC----TDDPVL  136 (248)
T ss_pred             CHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHH--------HHHHHHHHHH-----CCCEEEEEC----CCCHHH
T ss_conf             79999999999999848986999981797677988689--------9999999998-----899897867----889999


Q ss_pred             HHHHHHHHHHHH-----HHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEE
Q ss_conf             998876422234-----67664135675167899899989850770331002-54101899999985389836
Q gi|254780178|r  200 FSAERLKELDLK-----GYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMF  266 (378)
Q Consensus       200 ~Sa~~l~~~~~~-----G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlF  266 (378)
                        ++.+.+.+..     |=.||. ..|-......+++   .+..  +-|..+ -|+|.|-+-..+.++|+|-.
T Consensus       137 --akrLe~~Gc~avMPlgsPIGS-g~Gl~n~~~l~~i---~e~~--~vPvIVDAGiG~pS~Aa~aMElG~daV  201 (248)
T cd04728         137 --AKRLEDAGCAAVMPLGSPIGS-GQGLLNPYNLRII---IERA--DVPVIVDAGIGTPSDAAQAMELGADAV  201 (248)
T ss_pred             --HHHHHHCCCEEEEECCCCCCC-CCCCCCHHHHHHH---HHHC--CCCEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf             --999997495345204564347-9887999999999---9847--998898479997567899987265533


No 66 
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=53.81  E-value=11  Score=18.01  Aligned_cols=42  Identities=21%  Similarity=0.250  Sum_probs=29.6

Q ss_pred             HHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCEEEECCEEECC
Q ss_conf             89998985077033100254101899999985389836620000023
Q gi|254780178|r  229 HILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAG  275 (378)
Q Consensus       229 ~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~A  275 (378)
                      ++++.+..    ..--++.|+.+|.+|..+.++|.|+.-. +|....
T Consensus       100 ~v~~~a~~----~~i~~iPG~~TpsEi~~A~~~Ga~~vKl-FPA~~~  141 (209)
T PRK06552        100 ETAKICNR----YQIPYLPGCMTVTEIVTALEAGVDIVKL-FPGSTV  141 (209)
T ss_pred             HHHHHHHH----CCCCEECCCCCHHHHHHHHHCCCCEEEE-CCHHHC
T ss_conf             99999998----5996417979999999999869995885-833324


No 67 
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=52.90  E-value=15  Score=17.12  Aligned_cols=71  Identities=15%  Similarity=0.285  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCH-HHHEECCCCHHHHHHHHHHHCCCCEEEECCEEECCC
Q ss_conf             9887642223467664135675167899899989850770-331002541018999999853898366200000233
Q gi|254780178|r  201 SAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPV-ERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGR  276 (378)
Q Consensus       201 Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~-~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar  276 (378)
                      +++++...+.||.-|+. ..|.|. ...+.+..+..+|-. ..|  +||+.-=++|+ +.|+|..++-=-+--|-+.
T Consensus       227 ~~~~I~~~~PDGIfLSN-GPGDP~-~~~~~i~~i~~li~~~~iP--ifGICLGHQlL-alA~GakT~KmkfGHrG~N  298 (383)
T CHL00197        227 TYQDIMAYQPDGILLSN-GPGDPS-TVHYGIKTVKKLIKKANIP--IFGICMGHQIL-SLALEAKTFKLKFGHRGLN  298 (383)
T ss_pred             CCCHHHCCCCCEEEECC-CCCCHH-HHHHHHHHHHHHHHCCCCC--EEEECHHHHHH-HHHCCCEEEECCCCCCCCC
T ss_conf             51134256888899789-999978-9899999999999648997--89955889999-9973983756688877988


No 68 
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=52.61  E-value=16  Score=16.98  Aligned_cols=70  Identities=19%  Similarity=0.394  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCEEEECCEEECC
Q ss_conf             988764222346766413567516789989998985077033100254101899999985389836620000023
Q gi|254780178|r  201 SAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAG  275 (378)
Q Consensus       201 Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~A  275 (378)
                      +++++.+++.||.-|+. ..|.| +.....|..+..++-..+|  +||+=-=++|+ +.|+|.+++---+--|-+
T Consensus       212 ~~eeIl~~~pDGiflSN-GPGDP-~~~~~~i~~ik~l~~~~iP--ifGICLGHQll-alA~Ga~T~KmkFGHrG~  281 (368)
T COG0505         212 SAEEILALNPDGIFLSN-GPGDP-APLDYAIETIKELLGTKIP--IFGICLGHQLL-ALALGAKTYKMKFGHRGA  281 (368)
T ss_pred             CHHHHHHHCCCEEEEEC-CCCCH-HHHHHHHHHHHHHHCCCCC--EEEECHHHHHH-HHHCCCCEEECCCCCCCC
T ss_conf             99999851899799748-99880-6778999999998646898--37886888999-986678643203688778


No 69 
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=52.55  E-value=18  Score=16.65  Aligned_cols=51  Identities=16%  Similarity=0.115  Sum_probs=33.5

Q ss_pred             CCCCCCCHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             598669813368898999886857850899999999999999999999999985998999999999853
Q gi|254780178|r  301 LDAESHCSALRDYSRAYLHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQENWK  369 (378)
Q Consensus       301 i~~~C~C~~C~~ytraYl~HL~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~~~~~~  369 (378)
                      |...-.|++|++-|-+      .++-            -.-..+-+.||+-|.+|.=++-+.+|+...+
T Consensus        37 L~~~lRCpvCq~qsi~------~S~a------------~~A~dmR~~I~~~i~~G~sd~eI~~~l~~RY   87 (126)
T TIGR03147        37 LAKSLRCPQCQNQNLV------ESNS------------PIAYDLRHEVYSMVNEGKSNQQIIDFMTARF   87 (126)
T ss_pred             HHHHCCCCCCCCCCHH------HCCH------------HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf             9981688777997740------0761------------9999999999999985999899999999970


No 70 
>TIGR02082 metH methionine synthase; InterPro: IPR011822   Vitamin B12 dependent methionine synthase 2.1.1.13 from EC (5-methyltetrahydrofolate--homocysteine S-methyltransferase) catalyses the conversion of 5-methyltetrahydrofolate and L-homocysteine to tetrahydrofolate and L-methionine as the final step in de novo methionine biosynthesis. The enzyme requires methylcobalamin as a cofactor. In humans, defects in this enzyme are the cause of autosomal recessive inherited methylcobalamin deficiency (CBLG), which causes mental retardation, macrocytic anemia and homocystinuria. Mild deficiencies in activity may result in mild hyperhomocysteinemia, and mutations in the enzyme may be involved in tumorigenesis. Vitamin B12 dependent methionine synthase is found in prokaryotes and eukaryotes, but in prokaryotes the cofactor is cobalamin.   This enzyme is a large protein composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and tetrahydrofolate , the third module binds the B12 cofactor , and the C-terminal module (activation domain) binds S-adenosylmethionine. The activation domain is essential for the reductive activation of the enzyme. During the catalytic cycle, the highly reactive cob(I)alamin intermediate can be oxidised to produce an inactive cob(II)alamin enzyme; the enzyme is then reactivated via reductive methylation by the activation domain . The activation domain adopts an unusual alpha/beta fold.Recent studies suggest that this enzyme exists as an ensemble of conformations with equilibria dependent on the oxidation and methylation state of the cobalamin and on the concentrations of substrates or products .; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0050897 cobalt ion binding, 0009086 methionine biosynthetic process.
Probab=52.40  E-value=18  Score=16.64  Aligned_cols=174  Identities=19%  Similarity=0.224  Sum_probs=92.3

Q ss_pred             CCCEEEEEHHHHHHCCCHHHHHHCCCCHHHCCCCC----CEEECCCCCCCCHHHHCCCCCCCC-EEEECCCCC---CEEE
Q ss_conf             99899932266573876899865274201101577----224114543210122102233331-021014454---1587
Q gi|254780178|r   54 GADVILGNAYHLMLRPGAERIARLGGLHKFIRWFK----PILTDSGGFQVMSLSKLCSIDEQG-VRFRSHIDG---SLYR  125 (378)
Q Consensus        54 g~~~il~Ntyhl~~~pg~~~i~~~gGlh~fl~~~~----~ilTDSGgfQv~sl~~~~~~~~~G-v~f~s~~dG---~~~~  125 (378)
                      |+|++=.|- .-..+.|....+++  +...-+=|.    |||-||.-|||+.-|=- .+--.+ |+.-|..||   .-.|
T Consensus       388 GAQilDiN~-D~~~lDg~~~M~~f--~~llA~ePdia~vPlMlDSs~~~vleaGLk-~~qGKcivNSislkdGDGPE~~F  463 (1265)
T TIGR02082       388 GAQILDINV-DDGMLDGVAAMKRF--LNLLASEPDIAKVPLMLDSSEWEVLEAGLK-CIQGKCIVNSISLKDGDGPEERF  463 (1265)
T ss_pred             CCEEEEEEE-CCCCCCCHHHHHHH--HHHHCCCCCCCCCCCCCCCCHHHHHHHHHH-HCCCEEEEEEECCCCCCCHHHHH
T ss_conf             977989870-65536737899999--996268986021360005743799976243-03884687320256688848999


Q ss_pred             ECHHHHHHHHHHCCCCEE-EEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE-----ECCCCCCHHHHH
Q ss_conf             129999999873289779-96012133221158999999988999999988513588860554-----023444366899
Q gi|254780178|r  126 VSPEESVHIQNLLGSDIQ-MQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFG-----IVQGGDNINLRS  199 (378)
Q Consensus       126 ltpe~~i~~q~~lg~DI~-~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfg-----iVqGG~~~dLR~  199 (378)
                      +   +-+++.+..|+=|+ |++|+.--... .+|..+-..|-.+-+-   +...-.+...||=     |--|  -+|-|+
T Consensus       464 ~---~~a~l~k~yGAavVvmafDEeGQA~t-~~~K~EI~~RAY~~lt---~~~gfpp~~IiFDPn~ltiaTG--iEEh~~  534 (1265)
T TIGR02082       464 L---EKAKLIKEYGAAVVVMAFDEEGQART-ADRKIEICKRAYELLT---EKVGFPPEDIIFDPNILTIATG--IEEHRR  534 (1265)
T ss_pred             H---HHHHHHHHCCCEEEEEECCCCHHHHH-HHHHHHHHHHHHHHHH---HHCCCCHHHCCCCCCHHCCCCC--CCCCHH
T ss_conf             9---99999984498489870154300103-7889999999999999---7448980220212131101147--642125


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCCH----------------HHHHHHHHHHCCC
Q ss_conf             998876422234676641356751678998999898507703310025410----------------1899999985389
Q gi|254780178|r  200 FSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGVG----------------TPDDILKSVSYGV  263 (378)
Q Consensus       200 ~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~G----------------~P~~i~~~v~~Gv  263 (378)
                      ..                       -.+.+.+.+++..||.-+  -..|+.                |-.-+=+|+..|+
T Consensus       535 ya-----------------------~~fI~A~r~IK~~LP~a~--isgGvSNvSFsfrGn~a~R~a~hsVFLy~ai~aGm  589 (1265)
T TIGR02082       535 YA-----------------------IDFIEAIRWIKEELPDAK--ISGGVSNVSFSFRGNPAVREALHSVFLYHAIRAGM  589 (1265)
T ss_pred             HH-----------------------HHHHHHHHHHHHHCCCCE--EECCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             67-----------------------899999999996589728--85340222126578718999986899999995146


Q ss_pred             CE
Q ss_conf             83
Q gi|254780178|r  264 DM  265 (378)
Q Consensus       264 Dl  265 (378)
                      ||
T Consensus       590 Dm  591 (1265)
T TIGR02082       590 DM  591 (1265)
T ss_pred             CC
T ss_conf             10


No 71 
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=51.75  E-value=18  Score=16.57  Aligned_cols=227  Identities=11%  Similarity=0.043  Sum_probs=100.9

Q ss_pred             CCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf             31021014454158712999999987328977996012133221158999999988999999988513588860554023
Q gi|254780178|r  111 QGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQ  190 (378)
Q Consensus       111 ~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVq  190 (378)
                      +||.+-+.=||.+...  +..-+....+..+.+|.|-.-...+.+.+.....+.+-..++++....  ......|.-.|+
T Consensus        90 d~vv~~~tCD~kkkm~--e~~~~~~p~~~~~~~~~lP~~~~~~~~~~~~~~E~~~~k~~LE~~~g~--~it~e~L~~aI~  165 (377)
T TIGR03190        90 EGVTLTQSCIQYRQTF--GSWRQHVPTVKWDYYVPMPNEVQSPHARKAHYAEVQRFRVFLQTLTGK--EITDDMLRDALA  165 (377)
T ss_pred             CEEEECCCCHHHHHHH--HHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHH
T ss_conf             1455137977889999--999974787661168718997678789999999999999999999789--889999999999


Q ss_pred             CCCCHHHHHHHHHHHHHH------HHHHH-----HHHCCCCCCCHHHHHHHHHHHHHCCC------HHHHEECC-CCHH-
Q ss_conf             444366899998876422------23467-----66413567516789989998985077------03310025-4101-
Q gi|254780178|r  191 GGDNINLRSFSAERLKEL------DLKGY-----AIGGLAVGEPQEVMLHILSNVLPILP------VERPHYLM-GVGT-  251 (378)
Q Consensus       191 GG~~~dLR~~Sa~~l~~~------~~~G~-----aIgGl~~ge~~~~~~~ii~~~~~~LP------~~kPr~l~-G~G~-  251 (378)
                        .+-..|+ ..+++.++      +..|.     ...+  ...++++..+.+......|+      ..+||.|. |+-. 
T Consensus       166 --~~N~~R~-~lr~l~~l~~~~~~pisg~e~l~v~~~~--~f~d~~e~~~~l~~ll~~l~~~~~~~~~~~RIlvtG~~~~  240 (377)
T TIGR03190       166 --VCDENRR-LLRELFDYRKEADPKVTGVEALYASLTA--QFIDKREHNEMLKKVLAALPSRKVERKTGARFMTIGSEND  240 (377)
T ss_pred             --HHHHHHH-HHHHHHHHHCCCCCCCCHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
T ss_conf             --9999999-9999999854498898889999999885--0687899999999999998606554679977999789999


Q ss_pred             HHHHHHHHH-CCCCEE--EECCEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHH--HCC-CCHHHHHHHHHCC
Q ss_conf             899999985-389836--6200000233200245621002101232236885598669813--368-8989998868578
Q gi|254780178|r  252 PDDILKSVS-YGVDMF--DCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDAESHCSA--LRD-YSRAYLHHLLRVN  325 (378)
Q Consensus       252 P~~i~~~v~-~GvDlF--D~~~ptr~Ar~G~~~t~~g~i~l~~~~~~~d~~pi~~~C~C~~--C~~-ytraYl~HL~~~~  325 (378)
                      ...++..|+ .|..+.  |+..-+|+-++-.. .....+.-=-.+|.+       .|.|++  ..+ .-..||..|.+..
T Consensus       241 ~~kl~~iIEe~G~~VV~de~C~G~R~~~~~~~-~~~dpl~alA~rYl~-------~~~C~~~~~pn~~R~~~i~~lvke~  312 (377)
T TIGR03190       241 DIAFMAMVESVGATIVIDDQCSGTRYFWNASK-PEDDVIKAIAERYCD-------RPACPTKDYPVHTRYDHVLGLAKEY  312 (377)
T ss_pred             CCHHHHHHHHCCCEEEEECCCCCCCCCCCCCC-CCCCHHHHHHHHHHC-------CCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             73599999986998999777775120057888-777799999999827-------8998788888045899999999996


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             50899999999999999999999999985
Q gi|254780178|r  326 ESLAGMILSWANLAYYQDLMKEIRSAIAE  354 (378)
Q Consensus       326 E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~  354 (378)
                      .--|.+..++.--+.|.-....+|+++++
T Consensus       313 ~aDGVI~~~lkfCd~~~~E~~~l~~~l~~  341 (377)
T TIGR03190       313 NVQGAIFLQQKFCDPHEGDYPDLKRHLEA  341 (377)
T ss_pred             CCCEEEEEHHCCCCHHHHHHHHHHHHHHH
T ss_conf             88999983630688276618999999987


No 72 
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=51.71  E-value=18  Score=16.57  Aligned_cols=23  Identities=17%  Similarity=0.338  Sum_probs=18.6

Q ss_pred             EECCCCHHHHHHHHHHHCCCCEE
Q ss_conf             00254101899999985389836
Q gi|254780178|r  244 HYLMGVGTPDDILKSVSYGVDMF  266 (378)
Q Consensus       244 r~l~G~G~P~~i~~~v~~GvDlF  266 (378)
                      ...+.+|+|.+...+.++|.|-.
T Consensus       537 ~V~~N~~~p~da~~a~~~gadGV  559 (875)
T PRK09279        537 KVRANADTPEDAKTAREFGAEGI  559 (875)
T ss_pred             EEEECCCCHHHHHHHHHCCCCEE
T ss_conf             67745899899999997699838


No 73 
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=51.50  E-value=18  Score=16.54  Aligned_cols=51  Identities=10%  Similarity=0.041  Sum_probs=34.0

Q ss_pred             CCCCCCCHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             598669813368898999886857850899999999999999999999999985998999999999853
Q gi|254780178|r  301 LDAESHCSALRDYSRAYLHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQENWK  369 (378)
Q Consensus       301 i~~~C~C~~C~~ytraYl~HL~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~~~~~~  369 (378)
                      |-..-.|++|++-|-+      .+            |--.-..+-..||+-|.+|.=++-+.+|+...+
T Consensus        37 L~~elRCpvCq~qsi~------~S------------~s~iA~dmR~~Ir~~i~~G~sd~eI~~~l~~rY   87 (126)
T PRK10144         37 IASQLRCPQCQNQNLL------ES------------NAPVAVSMRHQVYSMVAEGKSEVEIIGWMTERY   87 (126)
T ss_pred             HHHHCCCCCCCCCCHH------HC------------CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf             9982788778998841------15------------779999999999999986999999999999864


No 74 
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=51.25  E-value=13  Score=17.60  Aligned_cols=32  Identities=25%  Similarity=0.382  Sum_probs=24.8

Q ss_pred             HHEECCCCHHHHHHHHHHHCCCCEEEECCEEEC
Q ss_conf             310025410189999998538983662000002
Q gi|254780178|r  242 RPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRA  274 (378)
Q Consensus       242 kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~  274 (378)
                      .--++.|+.+|.+|..+.++|.|+.- .+|...
T Consensus       106 ~i~~iPGv~TpsEi~~A~~~G~~~vK-lFPA~~  137 (210)
T PRK07455        106 DIPIIPGALTPTEIVTAWQAGASCVK-VFPVQA  137 (210)
T ss_pred             CCCEECCCCCHHHHHHHHHCCCCEEE-ECCCHH
T ss_conf             99765886999999999986998477-505132


No 75 
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase,  is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=51.10  E-value=13  Score=17.50  Aligned_cols=42  Identities=24%  Similarity=0.459  Sum_probs=29.5

Q ss_pred             HHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCEEEECCEEECC
Q ss_conf             89998985077033100254101899999985389836620000023
Q gi|254780178|r  229 HILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAG  275 (378)
Q Consensus       229 ~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~A  275 (378)
                      ++++.+...    .--++.|+.+|.++..+.++|.|++- .+|....
T Consensus        88 ~v~~~a~~~----~~~~iPGv~TpsEi~~A~~~G~~~vK-~FPa~~~  129 (190)
T cd00452          88 EVVKAANRA----GIPLLPGVATPTEIMQALELGADIVK-LFPAEAV  129 (190)
T ss_pred             HHHHHHHHC----CCCEECCCCCHHHHHHHHHCCCCEEE-ECCCCCC
T ss_conf             999999982----99665787999999999987999899-8955114


No 76 
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit; InterPro: IPR006274   Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC).   Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain.   Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains .    This entry represents the small subunit of the glutamine-dependent form (6.3.5.5 from EC) of carbamoyl phosphate synthase, CPSase II. The small subunit catalyses the hydrolysis of glutamine to ammonia, which in turn used by the large chain to synthesize carbamoyl phosphate. The C-terminal domain of the small subunit of CPSase has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (6.3.4.16 from EC). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species. ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=51.08  E-value=15  Score=17.03  Aligned_cols=64  Identities=19%  Similarity=0.457  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCC-HHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCEEEECC
Q ss_conf             8876422234676641356751-67899899989850770331002541018999999853898366200
Q gi|254780178|r  202 AERLKELDLKGYAIGGLAVGEP-QEVMLHILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDMFDCVM  270 (378)
Q Consensus       202 a~~l~~~~~~G~aIgGl~~ge~-~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~  270 (378)
                      ++++.+.+-||.-|+. ..|.| +. ....|..+..+|-..+|  +||+=-=++|+ |-|+|.++|==-+
T Consensus       230 ~~~i~~~~PDGiflSN-GPGDPH~~-~~~~i~~~~~l~~~~~P--~fGICLGHQll-ALA~Ga~TyKlKF  294 (383)
T TIGR01368       230 AEEIKKYNPDGIFLSN-GPGDPHAA-VEPAIETVRELLEAKIP--IFGICLGHQLL-ALAFGAKTYKLKF  294 (383)
T ss_pred             HHHHHHHCCCEEEEEC-CCCCCHHH-HHHHHHHHHHHHHCCCC--CCCCCHHHHHH-HHHCCCCEEECCC
T ss_conf             8999865788899908-79880567-89999999999844897--10026668999-9973887000465


No 77 
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=50.97  E-value=19  Score=16.49  Aligned_cols=127  Identities=16%  Similarity=0.177  Sum_probs=65.7

Q ss_pred             ECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHH---HHHHHHCC---CCCCEEEEECCCCCCHHHHH
Q ss_conf             1299999998732897799601213322115899999998899999---99885135---88860554023444366899
Q gi|254780178|r  126 VSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAE---RSLVAFGN---QPGKALFGIVQGGDNINLRS  199 (378)
Q Consensus       126 ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~---~~~~~~~~---~~~~~lfgiVqGG~~~dLR~  199 (378)
                      --|++++++...+.--..+-++  ....+-..+..+-++|-+..+.   ......+.   ...-.++|.  -|...|.-.
T Consensus       126 Clpd~VldlL~e~~~r~~vWvE--LGLQT~h~~Tlk~iNRgHd~~~y~dav~r~rkrgIkvc~HiI~GL--PgE~~~~ml  201 (312)
T COG1242         126 CLPDDVLDLLAEYNKRYEVWVE--LGLQTAHDKTLKRINRGHDFACYVDAVKRLRKRGIKVCTHLINGL--PGETRDEML  201 (312)
T ss_pred             CCCHHHHHHHHHHHHHEEEEEE--ECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEEEECC--CCCCHHHHH
T ss_conf             8818999999998644578877--453055589999876245449999999999974974988884079--888889999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCC----------------CHHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHH
Q ss_conf             99887642223467664135675----------------1678998999898507703310025410189999
Q gi|254780178|r  200 FSAERLKELDLKGYAIGGLAVGE----------------PQEVMLHILSNVLPILPVERPHYLMGVGTPDDIL  256 (378)
Q Consensus       200 ~Sa~~l~~~~~~G~aIgGl~~ge----------------~~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~  256 (378)
                      +-|+.++..+++|.-|-.|.+-+                +.++..+.+-..++.||++--.|=+..-.|.+.+
T Consensus       202 eTak~v~~~~v~GIKlH~LhvvkgT~m~k~Y~~G~l~~ls~eeYv~~~~d~le~lpp~vviHRitgd~pr~~l  274 (312)
T COG1242         202 ETAKIVAELGVDGIKLHPLHVVKGTPMEKMYEKGRLKFLSLEEYVELVCDQLEHLPPEVVIHRITGDAPRDTL  274 (312)
T ss_pred             HHHHHHHHCCCCEEEEEEEEEECCCHHHHHHHCCCCEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCE
T ss_conf             9999998668753888878886387599999718865545999999999999748932699970378985641


No 78 
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=49.90  E-value=13  Score=17.46  Aligned_cols=30  Identities=20%  Similarity=0.387  Sum_probs=24.8

Q ss_pred             HEECCCCHHHHHHHHHHHCCCCEEEECCEEE
Q ss_conf             1002541018999999853898366200000
Q gi|254780178|r  243 PHYLMGVGTPDDILKSVSYGVDMFDCVMPTR  273 (378)
Q Consensus       243 Pr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr  273 (378)
                      --|+.|+.+|.++..+.++|.|+.- .+|..
T Consensus       114 ~~~iPGv~TptEi~~A~~~G~~~vK-~FPa~  143 (223)
T PRK07114        114 IPYSPGCGSVSEIGFAEELGCEIVK-IFPGD  143 (223)
T ss_pred             CCCCCCCCCHHHHHHHHHCCCCEEE-ECCCC
T ss_conf             9753731999999999987999798-89732


No 79 
>pfam01081 Aldolase KDPG and KHG aldolase. This family includes the following members: 4-hydroxy-2-oxoglutarate aldolase (KHG-aldolase) Phospho-2-dehydro-3-deoxygluconate aldolase (KDPG-aldolase)
Probab=49.50  E-value=14  Score=17.23  Aligned_cols=31  Identities=26%  Similarity=0.592  Sum_probs=24.7

Q ss_pred             HHEECCCCHHHHHHHHHHHCCCCEEEECCEEE
Q ss_conf             31002541018999999853898366200000
Q gi|254780178|r  242 RPHYLMGVGTPDDILKSVSYGVDMFDCVMPTR  273 (378)
Q Consensus       242 kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr  273 (378)
                      .--++.|+.+|.++..+.++|.|+.- .+|..
T Consensus       101 ~i~~iPGv~TpsEi~~A~~~G~~~vK-lFPA~  131 (196)
T pfam01081       101 KIPLIPGVSTPSEIMLGLDLGLTRFK-FFPAE  131 (196)
T ss_pred             CCCEECCCCCHHHHHHHHHCCCCEEE-ECCCH
T ss_conf             99663785999999999987999899-78731


No 80 
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=49.36  E-value=15  Score=17.20  Aligned_cols=31  Identities=23%  Similarity=0.551  Sum_probs=24.8

Q ss_pred             HHEECCCCHHHHHHHHHHHCCCCEEEECCEEE
Q ss_conf             31002541018999999853898366200000
Q gi|254780178|r  242 RPHYLMGVGTPDDILKSVSYGVDMFDCVMPTR  273 (378)
Q Consensus       242 kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr  273 (378)
                      .--++.|+.+|.++..+.++|.|++- .+|..
T Consensus       108 ~i~~iPGv~TpsEi~~A~~~G~~~vK-~FPA~  138 (212)
T PRK05718        108 PIPLIPGVNTPSELMLAMELGLRTFK-FFPAE  138 (212)
T ss_pred             CCCEECCCCCHHHHHHHHHCCCCEEE-ECCCC
T ss_conf             99765786999999999987999899-78761


No 81 
>PTZ00333 triosephosphate isomerase; Provisional
Probab=49.33  E-value=20  Score=16.32  Aligned_cols=75  Identities=16%  Similarity=0.328  Sum_probs=38.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHH-HHHHHHHHHHCCCCCCCHHHHH
Q ss_conf             332211589999999889999999885135888605540234443668999988764-2223467664135675167899
Q gi|254780178|r  150 LALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLK-ELDLKGYAIGGLAVGEPQEVML  228 (378)
Q Consensus       150 ~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~-~~~~~G~aIgGl~~ge~~~~~~  228 (378)
                      |...++.+.+++...--..++.+.........-..|+|   |.+.++    -++++. ..++||..|||-++.   +++.
T Consensus       175 TG~~as~~~i~e~~~~Ir~~l~~~~~~~~~~~i~ILYG---GSVn~~----Na~~i~~~~~vDG~LVGgASL~---~~F~  244 (252)
T PTZ00333        175 TGKVATPEQAQEVHAFIRKWLSEKVGADVAKKVRIIYG---GSVNEK----NCHELIKQPDIDGFLVGGASLK---PEFV  244 (252)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHCHHHHCCCCEEEE---CCCCHH----HHHHHHCCCCCCEEEECHHHCC---HHHH
T ss_conf             89999999999999999999998718545067748872---777999----9999966889997896005379---7899


Q ss_pred             HHHHHH
Q ss_conf             899989
Q gi|254780178|r  229 HILSNV  234 (378)
Q Consensus       229 ~ii~~~  234 (378)
                      +|+...
T Consensus       245 ~Ii~~a  250 (252)
T PTZ00333        245 DIIKAA  250 (252)
T ss_pred             HHHHHH
T ss_conf             999985


No 82 
>KOG2343 consensus
Probab=49.29  E-value=20  Score=16.32  Aligned_cols=75  Identities=16%  Similarity=0.134  Sum_probs=41.6

Q ss_pred             CCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHC-----CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             320024562100210123223688559866981336-----889899988685785089999999999999999999999
Q gi|254780178|r  276 RHGLAFTRFGKINLRNARHIDDMRPLDAESHCSALR-----DYSRAYLHHLLRVNESLAGMILSWANLAYYQDLMKEIRS  350 (378)
Q Consensus       276 r~G~~~t~~g~i~l~~~~~~~d~~pi~~~C~C~~C~-----~ytraYl~HL~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~  350 (378)
                      |.|+..++.+..+..+.+|..-|+|+..-|.-+-|.     ++++.-.+.+....|          =...-++-++++|+
T Consensus       561 ~~G~I~~Pk~~f~nE~~ry~~rF~PF~sl~~P~~~~Ye~Fk~~~~~~q~~~~~iee----------l~~~aqk~f~~ak~  630 (689)
T KOG2343         561 RDGIILKPKGKFDNEELRYNRRFEPFNSLGVPPPVSYEQFKGHSDIRQRDLGSIEE----------LFATAQKSFDEAKN  630 (689)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHH----------HHHHHHHHHHHHHH
T ss_conf             47712078887546889999864237535899984299984346776415653589----------99999999999999


Q ss_pred             HHHCCCHHHH
Q ss_conf             9985998999
Q gi|254780178|r  351 AIAEDCFVDF  360 (378)
Q Consensus       351 aI~~g~f~~~  360 (378)
                      +++++--...
T Consensus       631 ~L~ni~n~~~  640 (689)
T KOG2343         631 GLENIDNKGE  640 (689)
T ss_pred             HHHCCCCCCH
T ss_conf             9854888508


No 83 
>PRK08904 consensus
Probab=48.97  E-value=15  Score=17.14  Aligned_cols=31  Identities=26%  Similarity=0.523  Sum_probs=24.8

Q ss_pred             HHEECCCCHHHHHHHHHHHCCCCEEEECCEEE
Q ss_conf             31002541018999999853898366200000
Q gi|254780178|r  242 RPHYLMGVGTPDDILKSVSYGVDMFDCVMPTR  273 (378)
Q Consensus       242 kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr  273 (378)
                      .--|+.|+.+|.++..+.++|.|+.- .+|..
T Consensus       103 ~i~~iPGv~TpsEi~~A~~~G~~~vK-~FPA~  133 (207)
T PRK08904        103 GIPLIPGVATPGEIQLALEHGIDTLK-LFPAE  133 (207)
T ss_pred             CCCEECCCCCHHHHHHHHHCCCCEEE-ECCCH
T ss_conf             99765786999999999987999899-77622


No 84 
>KOG1643 consensus
Probab=48.93  E-value=17  Score=16.77  Aligned_cols=99  Identities=17%  Similarity=0.296  Sum_probs=56.8

Q ss_pred             EECHHHHHHHHHHCC--CCEEEEE----HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE-EECCCCCCHHH
Q ss_conf             712999999987328--9779960----1213322115899999998899999998851358886055-40234443668
Q gi|254780178|r  125 RVSPEESVHIQNLLG--SDIQMQL----DECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALF-GIVQGGDNINL  197 (378)
Q Consensus       125 ~ltpe~~i~~q~~lg--~DI~~~L----D~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lf-giVqGG~~~dL  197 (378)
                      .+--++--.+.++++  +.|.++.    ..-|...++.+.+++-...-.+|+..-+....-.....++ |.|-||-..  
T Consensus       140 dVv~~Ql~aiad~v~~w~niviAYEPVWAIGTGk~atp~QaqEVh~~iR~wl~~~vs~~Va~~~RIiYGGSV~g~N~~--  217 (247)
T KOG1643         140 DVVFRQLKAIADKVKDWSNIVIAYEPVWAIGTGKTATPEQAQEVHAEIRKWLKSNVSDAVASSTRIIYGGSVNGGNCK--  217 (247)
T ss_pred             HHHHHHHHHHHHHCCCCCCEEEEEECEEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCEEEEECCCCCCCCHH--
T ss_conf             899999999998547864328985033665178779878999999999999863111666533378964655663478--


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf             999988764222346766413567516789989998
Q gi|254780178|r  198 RSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSN  233 (378)
Q Consensus       198 R~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~  233 (378)
                           +...+.|+|||.+||-++-   -++.+|++.
T Consensus       218 -----el~~~~diDGFLVGGaSLK---peF~~Iin~  245 (247)
T KOG1643         218 -----ELAKKPDIDGFLVGGASLK---PEFVDIINA  245 (247)
T ss_pred             -----HHCCCCCCCCEEECCCCCC---HHHHHHHHC
T ss_conf             -----7636545663477575468---179876532


No 85 
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=48.57  E-value=15  Score=17.06  Aligned_cols=31  Identities=19%  Similarity=0.353  Sum_probs=24.4

Q ss_pred             HHEECCCCHHHHHHHHHHHCCCCEEEECCEEE
Q ss_conf             31002541018999999853898366200000
Q gi|254780178|r  242 RPHYLMGVGTPDDILKSVSYGVDMFDCVMPTR  273 (378)
Q Consensus       242 kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr  273 (378)
                      .--++.|+.+|.+|..+.++|.|+.- .+|..
T Consensus       108 ~i~~iPGv~TpsEi~~A~~~G~~~vK-lFPA~  138 (212)
T PRK06015        108 DVPLLPGAITPSEVMALREEGYTVLK-FFPAE  138 (212)
T ss_pred             CCCEECCCCCHHHHHHHHHCCCCEEE-ECCCC
T ss_conf             99773786999999999987999899-78430


No 86 
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain.  DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=48.07  E-value=21  Score=16.19  Aligned_cols=41  Identities=15%  Similarity=0.122  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEEE
Q ss_conf             99899989850770331002-541018999999853898366
Q gi|254780178|r  227 MLHILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMFD  267 (378)
Q Consensus       227 ~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlFD  267 (378)
                      -.++|..+...+..+.|.-= =|+.+++|+.+.+..|.++.-
T Consensus       238 al~~v~~i~~~~~~~i~Iig~GGI~s~~Da~e~i~aGAs~Vq  279 (299)
T cd02940         238 ALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQ  279 (299)
T ss_pred             HHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCHHH
T ss_conf             999999999964899778998995999999999984998999


No 87 
>PRK08782 consensus
Probab=47.65  E-value=16  Score=16.92  Aligned_cols=51  Identities=24%  Similarity=0.332  Sum_probs=33.0

Q ss_pred             HHEECCCCHHHHHHHHHHHCCCCEEEECCEEECCC------------CCCCCCCCCCHHHHHHH
Q ss_conf             31002541018999999853898366200000233------------20024562100210123
Q gi|254780178|r  242 RPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGR------------HGLAFTRFGKINLRNAR  293 (378)
Q Consensus       242 kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar------------~G~~~t~~g~i~l~~~~  293 (378)
                      .--|+.|+.+|-+|..+.++|.|+.- .+|....-            .+.-|-+.|=++..|..
T Consensus       110 ~i~~iPGv~TpSEi~~A~~~G~~~vK-lFPA~~~Gg~~~lkal~~pfp~~~f~pTGGV~~~N~~  172 (219)
T PRK08782        110 PIPAVPGAATPTELLTLMGLGFRVCK-LFPATAVGGLQMLKGLAGPLSELKLCPTGGISETNAA  172 (219)
T ss_pred             CCCEECCCCCHHHHHHHHHCCCCEEE-ECCCHHCCCHHHHHHHHCCCCCCEEEECCCCCHHHHH
T ss_conf             99764785999999999987999899-7773220849999998476999818767998987899


No 88 
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=47.46  E-value=21  Score=16.13  Aligned_cols=38  Identities=11%  Similarity=-0.024  Sum_probs=19.2

Q ss_pred             HHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHH
Q ss_conf             99999987328977996012133221158999999988
Q gi|254780178|r  129 EESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELS  166 (378)
Q Consensus       129 e~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT  166 (378)
                      -+|+..|-.-|+|+++.||-+...-++....+=+..-+
T Consensus       180 ~~yl~~Qi~aGAd~iqIFDSwag~L~~~~f~~f~~p~~  217 (335)
T cd00717         180 IEYLKAQIEAGAQAVQIFDSWAGALSPEDFEEFVLPYL  217 (335)
T ss_pred             HHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf             99999999819987885075202068999999899999


No 89 
>pfam03918 CcmH Cytochrome C biogenesis protein. Members of this family include NrfF, CcmH, CycL, Ccl2.
Probab=47.19  E-value=21  Score=16.11  Aligned_cols=26  Identities=19%  Similarity=0.113  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             99999999998599899999999985
Q gi|254780178|r  343 DLMKEIRSAIAEDCFVDFAMQTQENW  368 (378)
Q Consensus       343 ~~~~~iR~aI~~g~f~~~~~~~~~~~  368 (378)
                      .+-..||+-|.+|.=++-+.+|+...
T Consensus        58 dmR~~i~~~i~~G~sd~eI~~~~~~r   83 (145)
T pfam03918        58 DLRLEVREMLVEGKSDEEIIDYMVAR   83 (145)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             99999999998599999999999986


No 90 
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=46.70  E-value=22  Score=16.06  Aligned_cols=124  Identities=13%  Similarity=0.068  Sum_probs=59.1

Q ss_pred             CHHHHHHHHHHCCCCEEEEEHHHCCCCCCH---HH---HHHHHHHHHHHHHHHHHHHCCCCCCEEEE----ECCCCCCHH
Q ss_conf             299999998732897799601213322115---89---99999988999999988513588860554----023444366
Q gi|254780178|r  127 SPEESVHIQNLLGSDIQMQLDECLALPAED---KE---LKRAMELSLRWAERSLVAFGNQPGKALFG----IVQGGDNIN  196 (378)
Q Consensus       127 tpe~~i~~q~~lg~DI~~~LD~~~~~~~~~---k~---~~~sv~rT~~w~~~~~~~~~~~~~~~lfg----iVqGG~~~d  196 (378)
                      .....++--+..|.--+..=|...|..++.   |+   .+.++++    .+.+.++.. .++-.+.+    ....|...-
T Consensus        94 nv~rtV~~~e~aGvagi~IEDq~~pKrcgh~~gk~lv~~~e~~~K----I~AA~~ar~-~~df~IiARTDA~~~~gldeA  168 (292)
T PRK11320         94 NIARTIKSMIKAGAAAVHIEDQVGQKRCGHRPNKEIVSQEEMVDR----IKAAVDART-DPDFVIMARTDALAVEGLDAA  168 (292)
T ss_pred             HHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHH----HHHHHHHCC-CCCEEEEEECCCCCCCCHHHH
T ss_conf             899999999974996898415556655686667533349999999----999998567-998599995363345886999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEE---CCCCHHH-HHHHHHHHCCCCEE
Q ss_conf             8999988764222346766413567516789989998985077033100---2541018-99999985389836
Q gi|254780178|r  197 LRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHY---LMGVGTP-DDILKSVSYGVDMF  266 (378)
Q Consensus       197 LR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~---l~G~G~P-~~i~~~v~~GvDlF  266 (378)
                      +++  ++...+.+.|+.-+.|+   .+.+++..+...    +  +.|..   +-|-.+| ...-++.++|+++.
T Consensus       169 i~R--a~aY~eAGAD~if~ea~---~~~ee~~~~~~~----~--~~Pll~n~~e~g~tP~~s~~el~~lG~~~v  231 (292)
T PRK11320        169 IER--AQAYVEAGADMIFPEAI---TELDMYRRFADA----V--KVPILANITEFGATPLFTTEELASAGVAMV  231 (292)
T ss_pred             HHH--HHHHHHCCCCEEECCCC---CCHHHHHHHHHH----C--CCCEEEEECCCCCCCCCCHHHHHHCCCCEE
T ss_conf             999--99999779989941789---999999999997----7--999899848999998879999997799899


No 91 
>PRK06857 consensus
Probab=45.75  E-value=18  Score=16.60  Aligned_cols=31  Identities=16%  Similarity=0.384  Sum_probs=24.2

Q ss_pred             HHEECCCCHHHHHHHHHHHCCCCEEEECCEEE
Q ss_conf             31002541018999999853898366200000
Q gi|254780178|r  242 RPHYLMGVGTPDDILKSVSYGVDMFDCVMPTR  273 (378)
Q Consensus       242 kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr  273 (378)
                      .--|+.|+.+|.+|..+.++|+|+.- .+|..
T Consensus       105 ~i~~iPGv~TpsEi~~A~~~G~~~vK-lFPA~  135 (209)
T PRK06857        105 NIPIVPGVNNPSLVEQALEMGLTTLK-FFPAE  135 (209)
T ss_pred             CCCEECCCCCHHHHHHHHHCCCCEEE-ECCCC
T ss_conf             99654787999999999987999899-78662


No 92 
>PRK13131 consensus
Probab=45.40  E-value=23  Score=15.93  Aligned_cols=205  Identities=15%  Similarity=0.147  Sum_probs=99.8

Q ss_pred             CCCEEECCCCCCCCC-CCHHHH---HHCCCCEE-EEEHHHHHHCCCHHHHHHCCCCHHHCCCCCCEEECCCCCCCCHHHH
Q ss_conf             585741068685688-688999---86099899-9322665738768998652742011015772241145432101221
Q gi|254780178|r   30 TPAFMPVGTAGTVKA-MYFDQV---RDLGADVI-LGNAYHLMLRPGAERIARLGGLHKFIRWFKPILTDSGGFQVMSLSK  104 (378)
Q Consensus        30 TP~flpv~t~g~v~~-lt~~~l---~~~g~~~i-l~Ntyhl~~~pg~~~i~~~gGlh~fl~~~~~ilTDSGgfQv~sl~~  104 (378)
                      -++|+|+.+.|-..- .+.+.+   .+.|++++ +.=+|--=.-.|+ +|+++. . +-++ .+. +.  ..|+  .+..
T Consensus        10 ~~alI~yitaG~P~~e~s~~~~~~l~~~GadiiEiGiPFSDP~ADGp-vIQ~a~-~-rAL~-~g~-~~--~~~~--~~~~   80 (257)
T PRK13131         10 KMAFIPFVTLGDPNYELSFEIIKTLIISGVSALELGFAFSDPVADGI-TIQASH-L-RALK-HAS-MA--KNFQ--LLKK   80 (257)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCH-HHHHHH-H-HHHH-CCC-HH--HHHH--HHHH
T ss_conf             94589886186899889999999999779999997899888554559-999999-9-9997-898-89--9999--9999


Q ss_pred             CCCCC-CCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             02233-33102101445415871299999998732897799601213322115899999998899999998851358886
Q gi|254780178|r  105 LCSID-EQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGK  183 (378)
Q Consensus       105 ~~~~~-~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~  183 (378)
                      .++.. +-.+-+.++++ -......|+.++--...|.|=.+.-|-+.             +....|...|.+. . ...-
T Consensus        81 ~r~~~~~~pivlM~Y~N-~i~~yG~e~F~~~~~~~GvdGvIipDLP~-------------eE~~~~~~~~~~~-~-l~~I  144 (257)
T PRK13131         81 IRDYNHHIPIGLLAYAN-LIFSYGVDGFYAQAKECGVDSVLIADMPL-------------IEKELVIKSAQKH-Q-IKQI  144 (257)
T ss_pred             HHHCCCCCCEEEECCHH-HHHHHCHHHHHHHHHHCCCCCEECCCCCH-------------HHHHHHHHHHHHC-C-CCEE
T ss_conf             87049998889992768-99985799999999865998565589996-------------7889999999977-9-8479


Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-CCCC---HHHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHH
Q ss_conf             055402344436689999887642223467664135-6751---67899899989850770331002-541018999999
Q gi|254780178|r  184 ALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLA-VGEP---QEVMLHILSNVLPILPVERPHYL-MGVGTPDDILKS  258 (378)
Q Consensus       184 ~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~-~ge~---~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~  258 (378)
                      .|..|    ...+.|.+.+-..++ +| -|.++-.+ .|..   .+...+.+..+....  +.|..+ ||+.+|+++..+
T Consensus       145 ~lvaP----tt~~~Ri~~i~~~s~-GF-iY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t--~~Pv~vGFGIs~~e~v~~~  216 (257)
T PRK13131        145 FIASP----NASVKDLEQVATHSQ-GY-IYTLARSGVTGASHTLENDASAIIKTLKTFS--PTPALLGFGISKKEHITNA  216 (257)
T ss_pred             EEECC----CCCHHHHHHHHHCCC-CE-EEEEECCCCCCCCCCCCHHHHHHHHHHHHCC--CCCEEEECCCCCHHHHHHH
T ss_conf             97289----998899999983589-74-9998457677986434076999999999668--9987998057988999999


Q ss_pred             HHCCCCEEE
Q ss_conf             853898366
Q gi|254780178|r  259 VSYGVDMFD  267 (378)
Q Consensus       259 v~~GvDlFD  267 (378)
                      ...|.|-.-
T Consensus       217 ~~~gaDGvI  225 (257)
T PRK13131        217 KGMGADGVI  225 (257)
T ss_pred             HHCCCCEEE
T ss_conf             855999999


No 93 
>PRK08104 consensus
Probab=45.28  E-value=18  Score=16.55  Aligned_cols=31  Identities=19%  Similarity=0.522  Sum_probs=24.7

Q ss_pred             HHEECCCCHHHHHHHHHHHCCCCEEEECCEEE
Q ss_conf             31002541018999999853898366200000
Q gi|254780178|r  242 RPHYLMGVGTPDDILKSVSYGVDMFDCVMPTR  273 (378)
Q Consensus       242 kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr  273 (378)
                      .--++.|+.+|.+|..+.++|.|+.- .+|..
T Consensus       108 ~i~~iPGv~TpsEi~~A~~~G~~~vK-lFPA~  138 (212)
T PRK08104        108 TIPLIPGISTVSELMLGMDYGLTEFK-FFPAE  138 (212)
T ss_pred             CCCEECCCCCHHHHHHHHHCCCCEEE-ECCCC
T ss_conf             99765676999999999987999799-78762


No 94 
>KOG4422 consensus
Probab=44.60  E-value=23  Score=15.85  Aligned_cols=74  Identities=22%  Similarity=0.370  Sum_probs=53.2

Q ss_pred             HHHHHHHHCCCCCCCCCCCC---------CHHHCCCCHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             02101232236885598669---------81336889899-988685785089999999999999999999999998599
Q gi|254780178|r  287 INLRNARHIDDMRPLDAESH---------CSALRDYSRAY-LHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDC  356 (378)
Q Consensus       287 i~l~~~~~~~d~~pi~~~C~---------C~~C~~ytraY-l~HL~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~  356 (378)
                      .+|-|+---..|.|+++.|+         |+--++-+-|| +|.|++++..--.+=..+|--++|.+|+..|-+.---+.
T Consensus       337 ~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~  416 (625)
T KOG4422         337 NDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDV  416 (625)
T ss_pred             HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99987631671567799712999999999998630789999999997377643348178888899999999998888999


Q ss_pred             HHHH
Q ss_conf             8999
Q gi|254780178|r  357 FVDF  360 (378)
Q Consensus       357 f~~~  360 (378)
                      +-.|
T Consensus       417 ~~~~  420 (625)
T KOG4422         417 TLKW  420 (625)
T ss_pred             HHHH
T ss_conf             9999


No 95 
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=43.17  E-value=15  Score=17.06  Aligned_cols=23  Identities=17%  Similarity=0.237  Sum_probs=15.3

Q ss_pred             ECCCCHHHHHHHHHHHCCCCEEE
Q ss_conf             02541018999999853898366
Q gi|254780178|r  245 YLMGVGTPDDILKSVSYGVDMFD  267 (378)
Q Consensus       245 ~l~G~G~P~~i~~~v~~GvDlFD  267 (378)
                      |==|+-+|++--..++.|.|+.-
T Consensus       196 vGGGIrs~E~A~~~a~agAD~IV  218 (240)
T COG1646         196 VGGGIRSPEQAREMAEAGADTIV  218 (240)
T ss_pred             ECCCCCCHHHHHHHHHCCCCEEE
T ss_conf             85884989999999971799899


No 96 
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS.  Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=42.64  E-value=25  Score=15.65  Aligned_cols=26  Identities=31%  Similarity=0.381  Sum_probs=10.0

Q ss_pred             CCCCCCEEEECHHHHHHHHHHC---CCCEE
Q ss_conf             1445415871299999998732---89779
Q gi|254780178|r  117 SHIDGSLYRVSPEESVHIQNLL---GSDIQ  143 (378)
Q Consensus       117 s~~dG~~~~ltpe~~i~~q~~l---g~DI~  143 (378)
                      |.+||++ .+++++.++-.+.+   |+||+
T Consensus        13 SFsdgg~-~~~~~~a~~~a~~~i~~GAdiI   41 (257)
T cd00739          13 SFSDGGR-FLSLDKAVAHAEKMIAEGADII   41 (257)
T ss_pred             CCCCCCC-CCCHHHHHHHHHHHHHCCCCEE
T ss_conf             8989985-8899999999999998799899


No 97 
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=41.67  E-value=9.7  Score=18.38  Aligned_cols=19  Identities=5%  Similarity=0.020  Sum_probs=13.4

Q ss_pred             HHHHHHHHCCCCEEEEEHH
Q ss_conf             9999987328977996012
Q gi|254780178|r  130 ESVHIQNLLGSDIQMQLDE  148 (378)
Q Consensus       130 ~~i~~q~~lg~DI~~~LD~  148 (378)
                      ..-++.+..+||+++..-|
T Consensus        83 ~~~~vl~~~kPD~VlVhGD  101 (383)
T COG0381          83 GLSKVLEEEKPDLVLVHGD  101 (383)
T ss_pred             HHHHHHHHHCCCEEEEECC
T ss_conf             9999998629998999178


No 98 
>TIGR01182 eda 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related . They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=40.77  E-value=21  Score=16.07  Aligned_cols=49  Identities=31%  Similarity=0.538  Sum_probs=33.6

Q ss_pred             EECCCCHHHHHHHHHHHCCCCEEEECCEEECC--------CC----CCCCCCCCCHHHHHHH
Q ss_conf             00254101899999985389836620000023--------32----0024562100210123
Q gi|254780178|r  244 HYLMGVGTPDDILKSVSYGVDMFDCVMPTRAG--------RH----GLAFTRFGKINLRNAR  293 (378)
Q Consensus       244 r~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~A--------r~----G~~~t~~g~i~l~~~~  293 (378)
                      =|+.||-+|.+|..|-++|++.|= -+|+-.-        =.    +.-|.+.|=||+.|..
T Consensus       104 P~iPGV~tpsEi~~Al~~G~~~lK-lFPAe~~GG~~~lkAL~GPf~~v~F~PTGGi~l~N~~  164 (205)
T TIGR01182       104 PIIPGVATPSEIMLALELGITALK-LFPAEVVGGVKMLKALAGPFPQVRFCPTGGINLDNAR  164 (205)
T ss_pred             CEECCCCCHHHHHHHHHCCCCEEE-ECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHH
T ss_conf             121777687899999875774652-1256235308999973165789845147999887899


No 99 
>TIGR02855 spore_yabG sporulation peptidase YabG; InterPro: IPR008764   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.     The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported.   This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of Bacillus subtilis ..
Probab=40.66  E-value=23  Score=15.83  Aligned_cols=89  Identities=12%  Similarity=0.084  Sum_probs=51.4

Q ss_pred             CCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCC----HHHHHHHHHHHHHHHHHHHHHHCCC---
Q ss_conf             333310210144541587129999999873289779960121332211----5899999998899999998851358---
Q gi|254780178|r  108 IDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAE----DKELKRAMELSLRWAERSLVAFGNQ---  180 (378)
Q Consensus       108 ~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~----~k~~~~sv~rT~~w~~~~~~~~~~~---  180 (378)
                      +.=-||.-..       .=-|+++.++.+..+|||.+.    |..++-    .+...=..-|-.++.-+|.+...+.   
T Consensus       138 v~V~G~~~~E-------~emPe~v~~L~~~~~PDIlVi----TGHDa~~K~~~~~~DL~aYRhSkyFv~~V~~aR~~~P~  206 (292)
T TIGR02855       138 VPVVGIHCKE-------KEMPEKVLDLIEEVRPDILVI----TGHDAYSKNKGNYGDLNAYRHSKYFVETVREARKYVPS  206 (292)
T ss_pred             CCEEEEEEEE-------CCCCHHHHHHHHHHCCCEEEE----ECCCCEEECCCCHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf             7279999841-------218088999997309978999----46663021678711364236656899999998631787


Q ss_pred             CCC-EEE-EECCCCCCHHHHHHHHHHHHHH
Q ss_conf             886-055-4023444366899998876422
Q gi|254780178|r  181 PGK-ALF-GIVQGGDNINLRSFSAERLKEL  208 (378)
Q Consensus       181 ~~~-~lf-giVqGG~~~dLR~~Sa~~l~~~  208 (378)
                      -+| .+| |..| ..|+-|-+.=|...+.-
T Consensus       207 lD~LVIFAGACQ-ShfE~li~AGANFASSP  235 (292)
T TIGR02855       207 LDQLVIFAGACQ-SHFESLIRAGANFASSP  235 (292)
T ss_pred             CCCHHHHHCCCH-HHHHHHHHHCCCCCCCC
T ss_conf             532343321214-45799997456545771


No 100
>pfam06838 Alum_res Aluminium resistance protein. This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria.
Probab=39.61  E-value=25  Score=15.68  Aligned_cols=117  Identities=17%  Similarity=0.161  Sum_probs=51.9

Q ss_pred             CCCCCCEEECCCCCCCCHHHHCCCCCCCCEEE-ECCCCCCEEEECH---HHHHHHHHHCCCCEEEEEHHHCCCCCCHHHH
Q ss_conf             01577224114543210122102233331021-0144541587129---9999998732897799601213322115899
Q gi|254780178|r   84 IRWFKPILTDSGGFQVMSLSKLCSIDEQGVRF-RSHIDGSLYRVSP---EESVHIQNLLGSDIQMQLDECLALPAEDKEL  159 (378)
Q Consensus        84 l~~~~~ilTDSGgfQv~sl~~~~~~~~~Gv~f-~s~~dG~~~~ltp---e~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~  159 (378)
                      ++++..=|++.|....-.+...-+.+..-|.. +|.-...+.-+|.   ++.+++.+.+.||+++..|-|=.--...+  
T Consensus       130 v~Y~~v~L~~~g~~D~~~i~~ai~~~tk~v~IQRS~GYs~R~slsi~~I~~~i~~vk~~~pd~ivfVDNCYGEFvE~~--  207 (405)
T pfam06838       130 IGYREVPLLENGKVDWQAVKTAITPNTKLIGIQRSKGYAWRPSLTIAEIKEMIKFVKEINPNVIVFVDNCYGEFVETK--  207 (405)
T ss_pred             CCCEEECCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC--
T ss_conf             660364357789849999997617564599996256866688879999999999999768993999978860202675--


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCC----HHHHHHHHHHHHHHH
Q ss_conf             99999889999999885135888605540234443----668999988764222
Q gi|254780178|r  160 KRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDN----INLRSFSAERLKELD  209 (378)
Q Consensus       160 ~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~----~dLR~~Sa~~l~~~~  209 (378)
                          |-|.-=++=..-..-++++   -|+...|.|    .||.++++-.+..-+
T Consensus       208 ----EP~~vGADliaGSLIKNpG---GgiaptGGYIaGk~dlVe~aa~RLTaPG  254 (405)
T pfam06838       208 ----EPTHVGADLIAGSLIKNPG---GGIAKTGGYIAGKEELVEQASYRLTAPG  254 (405)
T ss_pred             ----CCCCCCHHHEECCCEECCC---CCCCCCCCEEECHHHHHHHHHHHHCCCC
T ss_conf             ----8530163440120124799---7736757778536999999875206883


No 101
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=39.34  E-value=28  Score=15.32  Aligned_cols=75  Identities=17%  Similarity=0.244  Sum_probs=38.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-HHHHHHHHHCCCCCCCHHHHH
Q ss_conf             3322115899999998899999998851358886055402344436689999887642-223467664135675167899
Q gi|254780178|r  150 LALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKE-LDLKGYAIGGLAVGEPQEVML  228 (378)
Q Consensus       150 ~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~-~~~~G~aIgGl~~ge~~~~~~  228 (378)
                      |...++.+.+++....-..|+.+.... ....-..|+|   |.+.++    -++++.. .++||+.|||-++  +.+.+.
T Consensus       174 TG~~as~~~i~~~~~~Ir~~l~~~~~~-~~~~i~IlYG---GSVn~~----N~~~i~~~~~vDG~LVGgASL--~~~~F~  243 (251)
T PRK00042        174 TGKTATPEQAQEVHAFIRKVLAELYAE-VAEKVRILYG---GSVKPD----NAAELFAQPDIDGALVGGASL--KAEDFL  243 (251)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCCCEEEE---CCCCHH----HHHHHHCCCCCCEEEECHHHC--CHHHHH
T ss_conf             999999999999999999999986052-3057538871---778998----999996688999798515867--989999


Q ss_pred             HHHHHH
Q ss_conf             899989
Q gi|254780178|r  229 HILSNV  234 (378)
Q Consensus       229 ~ii~~~  234 (378)
                      +|+..+
T Consensus       244 ~Ii~aa  249 (251)
T PRK00042        244 AIVKAA  249 (251)
T ss_pred             HHHHHH
T ss_conf             999996


No 102
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=38.84  E-value=24  Score=15.72  Aligned_cols=30  Identities=23%  Similarity=0.501  Sum_probs=23.3

Q ss_pred             HHEECCCCHHHHHHHHHHHCCCCEEEECCEE
Q ss_conf             3100254101899999985389836620000
Q gi|254780178|r  242 RPHYLMGVGTPDDILKSVSYGVDMFDCVMPT  272 (378)
Q Consensus       242 kPr~l~G~G~P~~i~~~v~~GvDlFD~~~pt  272 (378)
                      .--++.|+.+|-++..+.++|.|+.- .+|.
T Consensus       104 ~i~~iPG~~TPsEi~~A~~~Ga~~vK-lFPA  133 (206)
T PRK09140        104 GMTVMPGVATPTEAFAALRAGADALK-LFPA  133 (206)
T ss_pred             CCCCCCCCCCHHHHHHHHHCCCCEEE-ECCH
T ss_conf             99652785999999999985987156-5751


No 103
>PRK00208 thiG thiazole synthase; Reviewed
Probab=38.82  E-value=28  Score=15.26  Aligned_cols=185  Identities=21%  Similarity=0.285  Sum_probs=88.2

Q ss_pred             EEECCEEEECCCEEECCCCCCCC-CCCHHHHHHCCCCEEEEEHHHHHHCCCHHHHHHCCCCHHHCCCCCCEE--ECCCCC
Q ss_conf             98788754058574106868568-868899986099899932266573876899865274201101577224--114543
Q gi|254780178|r   21 IITPRGVIKTPAFMPVGTAGTVK-AMYFDQVRDLGADVILGNAYHLMLRPGAERIARLGGLHKFIRWFKPIL--TDSGGF   97 (378)
Q Consensus        21 L~t~~g~i~TP~flpv~t~g~v~-~lt~~~l~~~g~~~il~Ntyhl~~~pg~~~i~~~gGlh~fl~~~~~il--TDSGgf   97 (378)
                      |..+..++..-  +.++|..-.. .+..+-++..|++++-..    ..|-.... .....+-.+++|.+..+  ..+|. 
T Consensus         2 l~I~~~~f~SR--LilGTgky~s~~~~~~ai~aSg~eivTVA----lRR~~~~~-~~~~~~l~~i~~~~~~lLPNTAGc-   73 (256)
T PRK00208          2 LTIAGKTFSSR--LLLGTGKYPSPEVMQEAIEASGAEIVTVA----LRRVNLGD-PGGDNLLDLLDPLGVTLLPNTAGC-   73 (256)
T ss_pred             CEECCEEEECC--EEEECCCCCCHHHHHHHHHHHCCCEEEEE----EEEECCCC-CCCHHHHHHHCCCCCEECCCCCCC-
T ss_conf             18999997743--47864899999999999999689779999----86424778-985058887431585676664032-


Q ss_pred             CCCHHHHCCCCCCCCEEEECCCCCCEEEECHHHHHHHH----HHCCCCEE---EEEHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             21012210223333102101445415871299999998----73289779---960121332211589999999889999
Q gi|254780178|r   98 QVMSLSKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQ----NLLGSDIQ---MQLDECLALPAEDKELKRAMELSLRWA  170 (378)
Q Consensus        98 Qv~sl~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q----~~lg~DI~---~~LD~~~~~~~~~k~~~~sv~rT~~w~  170 (378)
                                                  .|.++.++.-    +.++.|++   +.-|+.+-.+++.+        |.+-+
T Consensus        74 ----------------------------~ta~EAVr~A~laRE~~~tnwIKLEVi~D~~~LlPD~~e--------tl~Aa  117 (256)
T PRK00208         74 ----------------------------RTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIE--------TLKAA  117 (256)
T ss_pred             ----------------------------CCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHH--------HHHHH
T ss_conf             ----------------------------679999999999999848986999981797677988689--------99999


Q ss_pred             HHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH-----HHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEE
Q ss_conf             99988513588860554023444366899998876422234-----6766413567516789989998985077033100
Q gi|254780178|r  171 ERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKELDLK-----GYAIGGLAVGEPQEVMLHILSNVLPILPVERPHY  245 (378)
Q Consensus       171 ~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~-----G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~  245 (378)
                      +...+     ++=..++-+    ..|+..  ++.+.+.+..     |=.||. ..|-......+++   .+..  +-|..
T Consensus       118 e~Lv~-----eGF~VlpY~----~~D~v~--akrLe~~Gc~avMPlgsPIGS-g~Gl~n~~~l~~i---~e~~--~vPvI  180 (256)
T PRK00208        118 EILVK-----EGFVVLPYC----TDDPVL--AKRLEEAGCAAVMPLGAPIGS-GLGLLNPYNLRII---IEQA--DVPVI  180 (256)
T ss_pred             HHHHH-----CCCEEEEEC----CCCHHH--HHHHHHCCCEEEEECCCCCCC-CCCCCCHHHHHHH---HHHC--CCCEE
T ss_conf             99998-----899897867----889899--999997495345204564347-9887999999999---9867--99889


Q ss_pred             C-CCCHHHHHHHHHHHCCCCEE
Q ss_conf             2-54101899999985389836
Q gi|254780178|r  246 L-MGVGTPDDILKSVSYGVDMF  266 (378)
Q Consensus       246 l-~G~G~P~~i~~~v~~GvDlF  266 (378)
                      + -|+|.|-+-..+.++|+|-.
T Consensus       181 VDAGiG~pS~Aa~AMElG~DaV  202 (256)
T PRK00208        181 VDAGIGTPSDAAQAMELGADAV  202 (256)
T ss_pred             EECCCCCHHHHHHHHHCCCCEE
T ss_conf             8578897667899986255432


No 104
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=38.74  E-value=22  Score=16.05  Aligned_cols=60  Identities=28%  Similarity=0.388  Sum_probs=45.6

Q ss_pred             ECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHCCCHHHHEECCCCH
Q ss_conf             0234443668999988764222346766413567-51678998999898507703310025410
Q gi|254780178|r  188 IVQGGDNINLRSFSAERLKELDLKGYAIGGLAVG-EPQEVMLHILSNVLPILPVERPHYLMGVG  250 (378)
Q Consensus       188 iVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~g-e~~~~~~~ii~~~~~~LP~~kPr~l~G~G  250 (378)
                      +|.| .-.|||..+.+...  ++.+++|+|+++. -+.....++++.+...||...|.+.+.-|
T Consensus        98 ii~g-da~~l~~~l~e~~g--q~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg  158 (194)
T COG3963          98 IING-DAFDLRTTLGEHKG--QFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG  158 (194)
T ss_pred             CCCC-CHHHHHHHHHHCCC--CEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEC
T ss_conf             3054-05657877865279--7401688656002486778999999999856899727999846


No 105
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=38.31  E-value=29  Score=15.21  Aligned_cols=116  Identities=22%  Similarity=0.330  Sum_probs=57.4

Q ss_pred             ECHHHHHHHH----HHC------CCCEE---EEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf             1299999998----732------89779---9601213322115899999998899999998851358886055402344
Q gi|254780178|r  126 VSPEESVHIQ----NLL------GSDIQ---MQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGG  192 (378)
Q Consensus       126 ltpe~~i~~q----~~l------g~DI~---~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG  192 (378)
                      .|.|+.++.-    +.+      +.|++   +.-|+-+-++++.+        |.+-++...+     ++=..++-+   
T Consensus        81 ~taeEAVr~A~lAREl~~~~g~~~tnwIKLEVi~D~~tLlPD~~e--------tl~Aae~Lv~-----eGF~VlpY~---  144 (267)
T CHL00162         81 QTAEEAIRVAFLGRELAKQLGQEDNNFVKLEVIPDPKYLLPDPIG--------TLKAAEFLVR-----KGFTVLPYI---  144 (267)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHH--------HHHHHHHHHH-----CCCEEEEEC---
T ss_conf             879999999999999853015678977999982798777988789--------9999999997-----899998954---


Q ss_pred             CCHHHHHHHHHHHHHHHH-----HHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEE
Q ss_conf             436689999887642223-----467664135675167899899989850770331002-54101899999985389836
Q gi|254780178|r  193 DNINLRSFSAERLKELDL-----KGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMF  266 (378)
Q Consensus       193 ~~~dLR~~Sa~~l~~~~~-----~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlF  266 (378)
                       ..|+-.  ++.+.+.+.     -|=.||. ..|-......+++-.   .  .+-|..+ -|+|.|-+-..+.++|+|-.
T Consensus       145 -~dD~v~--akrLe~~Gc~avMPlgsPIGS-g~Gl~n~~~l~~i~e---~--~~vPvIVDAGiG~pSdAa~aMElG~DaV  215 (267)
T CHL00162        145 -NADPVL--AKQLEDIGCATVMPLGSPIGS-GQGLQNLLNLQIIIE---N--AKIPVIIDAGIGTPSEASQAMELGASGV  215 (267)
T ss_pred             -CCCHHH--HHHHHHCCCEEEEECCCCCCC-CCCCCCHHHHHHHHH---C--CCCCEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf             -899899--999986598688634551236-887589999999996---4--8998899689896788899997467778


No 106
>pfam02896 PEP-utilizers_C PEP-utilising enzyme, TIM barrel domain.
Probab=37.78  E-value=20  Score=16.34  Aligned_cols=35  Identities=23%  Similarity=0.368  Sum_probs=27.5

Q ss_pred             CHHHHEECCC--CHHHHHHHHHHHCCCCEEEECCEEEC
Q ss_conf             7033100254--10189999998538983662000002
Q gi|254780178|r  239 PVERPHYLMG--VGTPDDILKSVSYGVDMFDCVMPTRA  274 (378)
Q Consensus       239 P~~kPr~l~G--~G~P~~i~~~v~~GvDlFD~~~ptr~  274 (378)
                      -.++|..+.|  +|+|..+..++.+|+|-| |+.|...
T Consensus       244 ~~g~~vsiCGE~a~dp~~~~~L~~lGi~~l-Sv~p~~i  280 (292)
T pfam02896       244 RKGKWVGICGEMAGDPSAVPLLLGLGLDEF-SMSPTSV  280 (292)
T ss_pred             HCCCEEEEECCCCCCHHHHHHHHHCCCCEE-EECHHHH
T ss_conf             879999980887679899999998799979-9887779


No 107
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=35.62  E-value=24  Score=15.76  Aligned_cols=48  Identities=17%  Similarity=0.172  Sum_probs=30.3

Q ss_pred             HHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEEEECCEEECC
Q ss_conf             9899989850770331002-54101899999985389836620000023
Q gi|254780178|r  228 LHILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMFDCVMPTRAG  275 (378)
Q Consensus       228 ~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlFD~~~ptr~A  275 (378)
                      .+.+..+...++...|..+ -|+-+..|++.|+++|.|.+=-.-|..++
T Consensus       260 ~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L~~  308 (360)
T COG1304         260 ADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGADAVGIGRPFLYG  308 (360)
T ss_pred             HHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             9999999997188717996388787789999999377654525999999


No 108
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase; InterPro: IPR006323   These sequences represent an enzyme that catalyzes the cleavage of the carbon phosphorous bond of a phosphonate. The mechanism depends on the substrate having a carbonyl one carbon away from the cleavage position. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases, and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base . The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilised by microorganisms as a chemical warfare agent..
Probab=34.79  E-value=33  Score=14.85  Aligned_cols=119  Identities=27%  Similarity=0.343  Sum_probs=68.2

Q ss_pred             CCEEEEEHHHC-CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC----EE---EEECCC---CCCHHHHHHHHHHHHHH
Q ss_conf             97799601213-322115899999998899999998851358886----05---540234---44366899998876422
Q gi|254780178|r  140 SDIQMQLDECL-ALPAEDKELKRAMELSLRWAERSLVAFGNQPGK----AL---FGIVQG---GDNINLRSFSAERLKEL  208 (378)
Q Consensus       140 ~DI~~~LD~~~-~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~----~l---fgiVqG---G~~~dLR~~Sa~~l~~~  208 (378)
                      -|+.+.|.+-- |-.-.|-..-+++-.-=+=|+|-.+.+.+.+..    ++   |-++|=   ..|--+--.+.+-++++
T Consensus        30 fgv~isleEAR~PMGlgK~dHiral~~~P~iA~rw~~vFgrlp~~~Di~aiYe~F~pl~ia~~a~haapIp~~levia~l  109 (199)
T TIGR01422        30 FGVEISLEEARKPMGLGKWDHIRALTELPRIAERWRRVFGRLPTEADIQAIYEEFMPLQIAKVAEHAAPIPAVLEVIAEL  109 (199)
T ss_pred             CCEEEEHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             87077466516887763689999986302899999997089997745899998616899998655405553689999999


Q ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHHH------------HCCC-HHHHEECCCCHHHH-HHHHHHHCCCCEE
Q ss_conf             234676641356751678998999898------------5077-03310025410189-9999985389836
Q gi|254780178|r  209 DLKGYAIGGLAVGEPQEVMLHILSNVL------------PILP-VERPHYLMGVGTPD-DILKSVSYGVDMF  266 (378)
Q Consensus       209 ~~~G~aIgGl~~ge~~~~~~~ii~~~~------------~~LP-~~kPr~l~G~G~P~-~i~~~v~~GvDlF  266 (378)
                      =-.|.-||+ +.|.+.+.|-.++....            +.+| ..+|       .|. -+..+++|||+=.
T Consensus       110 R~rGiKIGS-csGYpr~vMd~v~~~Aa~~GY~pD~vVatDdvpq~GRP-------~P~~alkNvieLGv~dv  173 (199)
T TIGR01422       110 RERGIKIGS-CSGYPREVMDIVVAEAALQGYKPDFVVATDDVPQAGRP-------YPFMALKNVIELGVDDV  173 (199)
T ss_pred             HHCCCEEEC-CCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCC-------HHHHHHHHHHHCCCCCC
T ss_conf             738844424-79875789999999997478976642466224678897-------47899998987075221


No 109
>TIGR01212 TIGR01212 radical SAM protein, TIGR01212 family; InterPro: IPR005911    This uncharacterised protein family shows significant similarity to IPR005910 from INTERPRO, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain..
Probab=33.67  E-value=34  Score=14.73  Aligned_cols=90  Identities=17%  Similarity=0.172  Sum_probs=54.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCCCC------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC-----
Q ss_conf             1158999999988999999988513588------86055402344436689999887642223467664135675-----
Q gi|254780178|r  154 AEDKELKRAMELSLRWAERSLVAFGNQP------GKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGE-----  222 (378)
Q Consensus       154 ~~~k~~~~sv~rT~~w~~~~~~~~~~~~------~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge-----  222 (378)
                      +-..++-+-++|-|.+++=.-...+-.+      .-.|.|-  -|...+.--+-|+.+++++++|.=|-+|.+-+     
T Consensus       149 tah~~TL~~INRgHd~~~y~~a~~~~~krGikVC~H~I~GL--PgE~~~~~~eTak~~~~l~vdGiKiH~LhvvkGt~m~  226 (307)
T TIGR01212       149 TAHDRTLKKINRGHDFACYVDAVKRARKRGIKVCSHVILGL--PGEDREEMLETAKIVASLDVDGIKIHPLHVVKGTKMA  226 (307)
T ss_pred             CHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEEEECC--CCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEECCHHH
T ss_conf             65589999851437878999999999765988999987428--9888889999999998379884887201787357578


Q ss_pred             -----------CHHHHHHHHHHHHHCCCHHHHEE
Q ss_conf             -----------16789989998985077033100
Q gi|254780178|r  223 -----------PQEVMLHILSNVLPILPVERPHY  245 (378)
Q Consensus       223 -----------~~~~~~~ii~~~~~~LP~~kPr~  245 (378)
                                 +.|+..+.+-..++.||++--.|
T Consensus       227 k~Y~~G~~~~l~~e~Y~~~~~d~le~lpP~vv~H  260 (307)
T TIGR01212       227 KQYEKGELKTLSLEEYISLACDFLEHLPPEVVVH  260 (307)
T ss_pred             HHHHCCCEEECCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf             8754574010476779999999985089855998


No 110
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2; InterPro: IPR011179   This group represents the bacterial and archaeal isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP isomerase catalyses the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), and is a key enzyme in the biosynthesis of isoprenoids via the mevalonate pathway. The bacterial and archaeal IPP isomerase (type 2 enzyme) differs from that found in eukaryotes (type 1 enzyme), and requires NADPH, magnesium, and FMN for activity , .; GO: 0004452 isopentenyl-diphosphate delta-isomerase activity, 0010181 FMN binding, 0008299 isoprenoid biosynthetic process, 0005737 cytoplasm.
Probab=33.60  E-value=17  Score=16.67  Aligned_cols=217  Identities=16%  Similarity=0.190  Sum_probs=124.2

Q ss_pred             ECCEEEECCCEEECCCCCCCCCCCH--HHH----HHCCCCEEEEEHHHHHHCCCHHHHHHCCCCHHHCCCCCCEEECCCC
Q ss_conf             7887540585741068685688688--999----8609989993226657387689986527420110157722411454
Q gi|254780178|r   23 TPRGVIKTPAFMPVGTAGTVKAMYF--DQV----RDLGADVILGNAYHLMLRPGAERIARLGGLHKFIRWFKPILTDSGG   96 (378)
Q Consensus        23 t~~g~i~TP~flpv~t~g~v~~lt~--~~l----~~~g~~~il~Ntyhl~~~pg~~~i~~~gGlh~fl~~~~~ilTDSGg   96 (378)
                      +-...++-|.++--=|.|+-+.-..  ..|    +++|..+-+.+.=.+.+.|...  +-+-=+|+ .+=+++++..-|+
T Consensus        50 flG~~~~~P~~I~aMTGG~~~~a~~IN~~LA~aA~e~gi~mgvGSqraal~~P~~~--~tF~~vR~-~aP~~~l~AN~GA  126 (349)
T TIGR02151        50 FLGKRLKAPFLINAMTGGSEEKAGKINRKLARAAEELGIPMGVGSQRAALKDPEVA--ETFEVVRE-EAPNGPLIANIGA  126 (349)
T ss_pred             ECCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEECHHHHHHCCCHHH--HHHHHHHH-HCCCCCEEECCCH
T ss_conf             46822116767614557736788899899999999819815430022211271246--66999997-6798337871787


Q ss_pred             CCCCHHHHCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHH-H-HHHHHH
Q ss_conf             32101221022333310210144541587129999999873289779960121332211589999999889-9-999998
Q gi|254780178|r   97 FQVMSLSKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSL-R-WAERSL  174 (378)
Q Consensus        97 fQv~sl~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~-~-w~~~~~  174 (378)
                      =|...                   +.+. .+|++.-++.+.|.+|-...     +.+.-.+-.+.-=||.- . |+++-.
T Consensus       127 ~q~~~-------------------~~~~-~g~~~~~~aid~i~AdAL~i-----HlN~~QE~vqpEGDr~F~~G~l~~i~  181 (349)
T TIGR02151       127 PQLVE-------------------GGKK-YGVEEAQEAIDMIEADALAI-----HLNVLQELVQPEGDRNFSKGWLEKIA  181 (349)
T ss_pred             HHHHC-------------------CCCC-CCHHHHHHHHHHHHHHHHHH-----HHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf             88740-------------------6534-48899999998751013355-----43233025579997015653899999


Q ss_pred             HHHCCCCCCEEEEEC----CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC-----C-------C---H----HHH----
Q ss_conf             851358886055402----34443668999988764222346766413567-----5-------1---6----789----
Q gi|254780178|r  175 VAFGNQPGKALFGIV----QGGDNINLRSFSAERLKELDLKGYAIGGLAVG-----E-------P---Q----EVM----  227 (378)
Q Consensus       175 ~~~~~~~~~~lfgiV----qGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~g-----e-------~---~----~~~----  227 (378)
                      +.-+..+    ++||    .=|.    =++.++.|.+.+++++=|+|.+--     |       +   .    +.+    
T Consensus       182 ~~~~~~~----vPVIvKEvG~G~----S~e~a~~L~~~Gv~aiDv~G~GGTswa~vE~~Rr~~~~~~~~~r~a~~f~~WG  253 (349)
T TIGR02151       182 EICSAVS----VPVIVKEVGFGI----SKEVAKLLADAGVKAIDVSGAGGTSWAAVENYRRAKESNQKYERLASAFSDWG  253 (349)
T ss_pred             HHHHHCC----CCEEEEECCCCC----CHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCC
T ss_conf             9996528----987998215799----88999999878900887078767559999988751575235788877774148


Q ss_pred             ---HHHHHHHHHCCCHHHHEECC-CCHHHHHHHHHHHCCCCEEEECCEEECC
Q ss_conf             ---98999898507703310025-4101899999985389836620000023
Q gi|254780178|r  228 ---LHILSNVLPILPVERPHYLM-GVGTPDDILKSVSYGVDMFDCVMPTRAG  275 (378)
Q Consensus       228 ---~~ii~~~~~~LP~~kPr~l~-G~G~P~~i~~~v~~GvDlFD~~~ptr~A  275 (378)
                         ...|..+...-.++.|..-. |+=+|+|++.|++||.|++=.+-|...+
T Consensus       254 ipT~~sL~~~~~~~~~~~~~iASGG~r~GlD~AKAlALGA~~~G~A~~~L~~  305 (349)
T TIGR02151       254 IPTAASLLEVRSIDAPDAPLIASGGLRTGLDVAKALALGADAVGMARPLLKA  305 (349)
T ss_pred             CCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8668999998642124773688467778889999999621188888999998


No 111
>PRK05588 histidinol-phosphatase; Provisional
Probab=33.05  E-value=35  Score=14.66  Aligned_cols=87  Identities=16%  Similarity=0.189  Sum_probs=45.9

Q ss_pred             EECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf             71299999998732897799601213322115899999998899999998851358886055402344436689999887
Q gi|254780178|r  125 RVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAER  204 (378)
Q Consensus       125 ~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~  204 (378)
                      .-++|++++...+.|-+++ .-|.+...........-.++.=.+..+++    ..  ...+.|+-- |..++.-.+..+.
T Consensus        16 ~~~~ee~v~~Ai~~Gl~~i-~TdH~d~~~~~~~~~~~d~~~y~~~~~~~----~~--~~i~~GiE~-g~~~~~~~~~~~~   87 (256)
T PRK05588         16 KMKIEEAIKKAKKNNLGII-ITEHMDLNLPDKNKFCFDIPSYFKEYSKY----RN--NKLLLGIEL-GMEKDLIEENKEI   87 (256)
T ss_pred             CCCHHHHHHHHHHCCCCEE-EECCCCCCCCCCCCCCCCHHHHHHHHHHH----HC--CCCCEEEEE-CCCCCCHHHHHHH
T ss_conf             7769999999998699889-96688889998543456999999999998----54--786457996-8377858999998


Q ss_pred             HHHHHHHHHHHHCCCC
Q ss_conf             6422234676641356
Q gi|254780178|r  205 LKELDLKGYAIGGLAV  220 (378)
Q Consensus       205 l~~~~~~G~aIgGl~~  220 (378)
                      +.+.+|| |.||+++.
T Consensus        88 l~~~~fD-yvIGSvH~  102 (256)
T PRK05588         88 INKYEFD-YIIGSIHL  102 (256)
T ss_pred             HHCCCCC-EEEEEEEE
T ss_conf             7348988-79986776


No 112
>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]
Probab=32.95  E-value=35  Score=14.65  Aligned_cols=11  Identities=36%  Similarity=0.241  Sum_probs=5.2

Q ss_pred             HHHHHHHHHHH
Q ss_conf             66899998876
Q gi|254780178|r  195 INLRSFSAERL  205 (378)
Q Consensus       195 ~dLR~~Sa~~l  205 (378)
                      .|+|.+--+.+
T Consensus        64 ~DlR~~V~e~l   74 (153)
T COG3088          64 RDLRHQVYELL   74 (153)
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999999


No 113
>TIGR01236 D1pyr5carbox1 1-pyrroline-5-carboxylate dehydrogenase; InterPro: IPR005931    The delta(1)-pyrroline-5-carboxylate synthetase (1.5.1.12 from EC) a mitochondrial inner membrane, ATP- and NADPH-dependent, bifunctional enzyme, catalyzes the reduction of glutamate to delta1-pyrroline-5-carboxylate, a critical step in the de novo biosynthesis of proline and ornithine. It is the rate-limiting enzyme in proline biosynthesis and is subject to feedback inhibition by proline.  1-pyrroline-5-carboxylate + NAD+ + H2O = L-glutamate + NADH     This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase.; GO: 0003842 1-pyrroline-5-carboxylate dehydrogenase activity, 0006561 proline biosynthetic process, 0005759 mitochondrial matrix.
Probab=32.68  E-value=31  Score=15.00  Aligned_cols=16  Identities=50%  Similarity=0.771  Sum_probs=9.4

Q ss_pred             CCCCHHHCCCCHHHHHHHH
Q ss_conf             6698133688989998868
Q gi|254780178|r  304 ESHCSALRDYSRAYLHHLL  322 (378)
Q Consensus       304 ~C~C~~C~~ytraYl~HL~  322 (378)
                      |=.|.+|   ||.|+=|=.
T Consensus       321 GQKCSA~---SRLy~P~S~  336 (551)
T TIGR01236       321 GQKCSAA---SRLYVPHSL  336 (551)
T ss_pred             CCHHHHH---HHHHHHHCC
T ss_conf             7216888---774443120


No 114
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=32.56  E-value=20  Score=16.34  Aligned_cols=36  Identities=19%  Similarity=0.244  Sum_probs=27.7

Q ss_pred             HHHHEECCC--CHHHHHHHHHHHCCCCEEEECCEEECCC
Q ss_conf             033100254--1018999999853898366200000233
Q gi|254780178|r  240 VERPHYLMG--VGTPDDILKSVSYGVDMFDCVMPTRAGR  276 (378)
Q Consensus       240 ~~kPr~l~G--~G~P~~i~~~v~~GvDlFD~~~ptr~Ar  276 (378)
                      .++|.-+.|  +|+|.-++.++.+|+|-| |+.|....+
T Consensus       495 ~g~~v~iCGEmA~dp~~~~lLlglG~~~l-Sm~p~~i~~  532 (575)
T PRK11177        495 EGKWTGMCGELAGDERATLLLLGMGLDEF-SMSAISIPR  532 (575)
T ss_pred             CCCEEEECCCCCCCHHHHHHHHHCCCCEE-EECHHHHHH
T ss_conf             59989976686569757999997799838-688888899


No 115
>pfam01215 COX5B Cytochrome c oxidase subunit Vb.
Probab=32.54  E-value=32  Score=14.92  Aligned_cols=31  Identities=29%  Similarity=0.404  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHCCCCEEEECCEEECCCCCCCC
Q ss_conf             01899999985389836620000023320024
Q gi|254780178|r  250 GTPDDILKSVSYGVDMFDCVMPTRAGRHGLAF  281 (378)
Q Consensus       250 G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~  281 (378)
                      |.-..-+.+...|+|.||- .|...++.|+.=
T Consensus        15 GlEr~Ell~~~~G~D~fd~-~~~~~~~~GT~e   45 (99)
T pfam01215        15 GLERRELLRELFGHDVFDI-KPLDTSRKGTLK   45 (99)
T ss_pred             CHHHHHHHHHHCCCCCCCC-CCCCCCCCCCCC
T ss_conf             5789999998719994557-754348898765


No 116
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=32.43  E-value=36  Score=14.60  Aligned_cols=63  Identities=17%  Similarity=0.264  Sum_probs=33.1

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHCC-CHHHHEEC
Q ss_conf             60554023444366899998876422234676641-356751678998999898507-70331002
Q gi|254780178|r  183 KALFGIVQGGDNINLRSFSAERLKELDLKGYAIGG-LAVGEPQEVMLHILSNVLPIL-PVERPHYL  246 (378)
Q Consensus       183 ~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgG-l~~ge~~~~~~~ii~~~~~~L-P~~kPr~l  246 (378)
                      +.+|.=|--+..-|-|....+.+.+.+.. ...|| +++||+.+++.+.+....++. |..-|...
T Consensus       166 ~~~y~~I~tt~t~edR~~tl~~vk~~Gi~-vcsGgI~GlGEs~eDri~~l~~L~~l~~pdsVPIn~  230 (335)
T COG0502         166 PEFYENIITTRTYEDRLNTLENVREAGIE-VCSGGIVGLGETVEDRAELLLELANLPTPDSVPINF  230 (335)
T ss_pred             HHHHCCCCCCCCHHHHHHHHHHHHHCCCC-CCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf             78875657898888999999999980985-045127618998889999999997189988542321


No 117
>pfam00809 Pterin_bind Pterin binding enzyme. This family includes a variety of pterin binding enzymes that all adopt a TIM barrel fold. The family includes dihydropteroate synthase EC:2.5.1.15 as well as a group methyltransferase enzymes including methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) that catalyses a key step in the Wood-Ljungdahl pathway of carbon dioxide fixation. It transfers the N5-methyl group from methyltetrahydrofolate (CH3-H4folate) to a cob(I)amide centre in another protein, the corrinoid iron-sulfur protein. MeTr is a member of a family of proteins that includes methionine synthase and methanogenic enzymes that activate the methyl group of methyltetra-hydromethano(or -sarcino)pterin.
Probab=32.18  E-value=36  Score=14.57  Aligned_cols=14  Identities=14%  Similarity=0.211  Sum_probs=4.8

Q ss_pred             HHHHHHHHHHCCCC
Q ss_conf             18999999853898
Q gi|254780178|r  251 TPDDILKSVSYGVD  264 (378)
Q Consensus       251 ~P~~i~~~v~~GvD  264 (378)
                      +|..+-.|++.|+|
T Consensus        79 ~~~v~~~al~~G~~   92 (208)
T pfam00809        79 NAEVAEAALKAGAD   92 (208)
T ss_pred             CHHHHHHHHHCCCC
T ss_conf             49999999981993


No 118
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH).  DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS.  Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.  Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate.  These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=32.06  E-value=36  Score=14.56  Aligned_cols=141  Identities=17%  Similarity=0.280  Sum_probs=53.4

Q ss_pred             CCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCC-CHHHHHHHHHHHHHHHHHHHHHHCC---CCCCEE
Q ss_conf             331021014454158712999999987328977996012133221-1589999999889999999885135---888605
Q gi|254780178|r  110 EQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPA-EDKELKRAMELSLRWAERSLVAFGN---QPGKAL  185 (378)
Q Consensus       110 ~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~-~~k~~~~sv~rT~~w~~~~~~~~~~---~~~~~l  185 (378)
                      +.|+.+-+-++|...  . .+..++....++-+++.--.-.|... ....-..-++.-..|+++.++...+   ..++.+
T Consensus        94 ~~G~~iINDVsg~~~--d-~~m~~~va~~~~~~ilmH~~~~p~~~~~~~~~~~~~~~v~~~~~~~i~~~~~~Gi~~~~Ii  170 (258)
T cd00423          94 KAGADIINDVSGGRG--D-PEMAPLAAEYGAPVVLMHMDGTPQTMQNNPYYADVVDEVVEFLEERVEAATEAGIPPEDII  170 (258)
T ss_pred             HCCCCEEECCHHHHC--C-HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHEEE
T ss_conf             859986824003106--5-5799999974998898305788655666898664899999999999999998699930088


Q ss_pred             EEECCC-CCCHHHHHHHHHHHHHHH----HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHH
Q ss_conf             540234-443668999988764222----346766413567516789989998985077033100254101899999985
Q gi|254780178|r  186 FGIVQG-GDNINLRSFSAERLKELD----LKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGVGTPDDILKSVS  260 (378)
Q Consensus       186 fgiVqG-G~~~dLR~~Sa~~l~~~~----~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~  260 (378)
                      +=|=-| |...+   ++.+-+..++    +.|+.+   -+|-+.   ...+..+...-|.++.     .|+-.....++.
T Consensus       171 iDPGiGFgK~~~---~n~~ll~~l~~~~~~~g~Pi---lvG~SR---Ksfi~~~~~~~~~~Rl-----~~t~a~~~~a~~  236 (258)
T cd00423         171 LDPGIGFGKTEE---HNLELLRRLDAFRELPGLPL---LLGVSR---KSFLGDLLSVGPKDRL-----AGTAAFLAAAIL  236 (258)
T ss_pred             ECCCCCCCCCHH---HHHHHHHHHHHHHHCCCCCE---EEEECH---HHHHHHHCCCCHHHHH-----HHHHHHHHHHHH
T ss_conf             747767788878---89999997999972159946---986029---8999875499868740-----989999999998


Q ss_pred             CCCCEEE
Q ss_conf             3898366
Q gi|254780178|r  261 YGVDMFD  267 (378)
Q Consensus       261 ~GvDlFD  267 (378)
                      .|+|++=
T Consensus       237 ~Ga~ilR  243 (258)
T cd00423         237 NGADIVR  243 (258)
T ss_pred             CCCCEEE
T ss_conf             7999999


No 119
>PRK00733 hppA membrane-bound proton-translocating pyrophosphatase; Validated
Probab=32.03  E-value=14  Score=17.41  Aligned_cols=40  Identities=25%  Similarity=0.468  Sum_probs=28.9

Q ss_pred             HHHHHHHHHCCCHHHHEECCCCHHHHHHHHHH--------HCCCCEEEECCEEE
Q ss_conf             98999898507703310025410189999998--------53898366200000
Q gi|254780178|r  228 LHILSNVLPILPVERPHYLMGVGTPDDILKSV--------SYGVDMFDCVMPTR  273 (378)
Q Consensus       228 ~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v--------~~GvDlFD~~~ptr  273 (378)
                      .+++..+-..+|+|-||      +|-.|.+.|        -+|.|+|+|-.-+.
T Consensus       192 ADLVGKVEagIPEDDPR------NPAvIADNVGDNVGDvAGmgADLFESy~~si  239 (682)
T PRK00733        192 ADLVGKVEAGIPEDDPR------NPAVIADNVGDNVGDCAGMGADLFESYVVTI  239 (682)
T ss_pred             CHHHHHHHCCCCCCCCC------CCCHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             02220353399989999------9525777507752010134530588889999


No 120
>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=31.87  E-value=29  Score=15.21  Aligned_cols=110  Identities=21%  Similarity=0.256  Sum_probs=49.2

Q ss_pred             EEEEECCCCCCHHHH-----HHHHHHHHHHHH--HHHHHHCCCCCCCHHHH---HHHHHHHHH-CCCHHHHEECCCCHHH
Q ss_conf             055402344436689-----999887642223--46766413567516789---989998985-0770331002541018
Q gi|254780178|r  184 ALFGIVQGGDNINLR-----SFSAERLKELDL--KGYAIGGLAVGEPQEVM---LHILSNVLP-ILPVERPHYLMGVGTP  252 (378)
Q Consensus       184 ~lfgiVqGG~~~dLR-----~~Sa~~l~~~~~--~G~aIgGl~~ge~~~~~---~~ii~~~~~-~LP~~kPr~l~G~G~P  252 (378)
                      .++-.--||-+.+.-     .-+.++....|-  .|--|   ++. +...|   +|++++..- .+|.++-..+   =||
T Consensus       167 kIiLTASGGPF~~~~~~~l~~vT~~~AL~HP~W~MG~KI---SID-SATmmNKgLEvIEA~~LF~l~~~kI~vv---IHP  239 (392)
T PRK12464        167 KIIVTASGGAFRDKTREELATLTAKDALKHPNWLMGRKI---TVD-SATLMNKGLEVIEAHWLFGIPYEKIDVL---IHP  239 (392)
T ss_pred             EEEEECCCCCHHCCCHHHHHCCCHHHHCCCCCCCCCCCC---CEE-HHHHHHHHHHHHHHHHHHCCCHHHEEEE---ECC
T ss_conf             899965784141378998708798887049898788963---100-5888998999999999809988997767---760


Q ss_pred             HHHHHHHHCCCCEEEECCEEECCCCC------CCCCCC-------CCHHHHHHHHCCCCCCCCCC
Q ss_conf             99999985389836620000023320------024562-------10021012322368855986
Q gi|254780178|r  253 DDILKSVSYGVDMFDCVMPTRAGRHG------LAFTRF-------GKINLRNARHIDDMRPLDAE  304 (378)
Q Consensus       253 ~~i~~~v~~GvDlFD~~~ptr~Ar~G------~~~t~~-------g~i~l~~~~~~~d~~pi~~~  304 (378)
                      +.++++.   |..-|-+.-+..+...      .++++.       ..+++.+.. .-+|+++|..
T Consensus       240 qSiIHs~---V~f~DGs~~aq~~~pDMriPI~yaL~yP~r~~~~~~~l~~~~~~-~L~F~~~d~~  300 (392)
T PRK12464        240 QSIIHSL---VEFIDGSVLAQLGAPDMRMPIQYALHYPERLPSSYEKLNLAEIG-SLHFEKPDLE  300 (392)
T ss_pred             HHHHHEE---EEECCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCHHHCC-CCCCCCCCHH
T ss_conf             1434403---69679828887359985889998845800046776656765557-7544689946


No 121
>TIGR01001 metA homoserine O-succinyltransferase; InterPro: IPR005697    This family of enzymes, homoserine O-succinyltransferase (2.3.1.46 from EC), catalyses the first step in the biosynthesis of methionine.  Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine. ; GO: 0008415 acyltransferase activity, 0019281 methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm.
Probab=31.78  E-value=26  Score=15.52  Aligned_cols=42  Identities=21%  Similarity=0.271  Sum_probs=25.5

Q ss_pred             HHHHH--HHHHHHHHHHHHHHHCCCCCCCH-------HHHHHHHHHHHHCC
Q ss_conf             89999--88764222346766413567516-------78998999898507
Q gi|254780178|r  197 LRSFS--AERLKELDLKGYAIGGLAVGEPQ-------EVMLHILSNVLPIL  238 (378)
Q Consensus       197 LR~~S--a~~l~~~~~~G~aIgGl~~ge~~-------~~~~~ii~~~~~~L  238 (378)
                      |.+..  -+.+.++.|||+.|-|-+++.-.       +++.+|+++++.+.
T Consensus        85 l~~FY~~fe~vk~~~FDG~IvTGAP~el~~Fe~VaYW~~l~~i~~w~k~~V  135 (305)
T TIGR01001        85 LNKFYKTFEEVKDRKFDGLIVTGAPVELVDFEDVAYWEELKEIMEWSKQNV  135 (305)
T ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             999865478885127881588477624466443223689999999875067


No 122
>PRK01295 phosphoglyceromutase; Provisional
Probab=31.74  E-value=37  Score=14.52  Aligned_cols=150  Identities=17%  Similarity=0.178  Sum_probs=78.2

Q ss_pred             CHHHCCCCCCEEECCCCCCCCHHHHCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHH
Q ss_conf             20110157722411454321012210223333102101445415871299999998732897799601213322115899
Q gi|254780178|r   80 LHKFIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKEL  159 (378)
Q Consensus        80 lh~fl~~~~~ilTDSGgfQv~sl~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~  159 (378)
                      -++|-+|..+=||+.|=-|+-.++..-  .+                         +.+..|++        +.++-+|+
T Consensus        18 ~~r~qG~~D~~Lte~G~~QA~~~~~~L--~~-------------------------~~~~~d~i--------ysSpL~RA   62 (206)
T PRK01295         18 KNLFTGWRDPDLTEQGVAEAKAAGRKL--KA-------------------------AGLKFDIA--------FTSALSRA   62 (206)
T ss_pred             CCCEECCCCCCCCHHHHHHHHHHHHHH--HH-------------------------CCCCCCEE--------EECCCHHH
T ss_conf             396638999996989999999999999--97-------------------------69977889--------97812578


Q ss_pred             HHHHHHHHHHHHHH-HHHHCC-CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH-HHHHH----
Q ss_conf             99999889999999-885135-888605540234443668999988764222346766413567516789-98999----
Q gi|254780178|r  160 KRAMELSLRWAERS-LVAFGN-QPGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVM-LHILS----  232 (378)
Q Consensus       160 ~~sv~rT~~w~~~~-~~~~~~-~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~-~~ii~----  232 (378)
                      .+..+.-.+-+.+. +....+ .-.-.=||.-+|=.+.|.+.+..++....--+.|.. ..+.||+..++ .+++.    
T Consensus        63 ~~TA~~I~~~lg~~~~~v~~d~~LrE~~fG~wEG~~~~ei~~~~~~~~~~~~~~~~~~-~pP~GES~~~~~~Rv~~~~~~  141 (206)
T PRK01295         63 QHTCQLILEELGQPGLETIRDQALNERDYGDLSGLNKDDARAKWGEEQVHIWRRSYDV-PPPGGESLKDTGARVLPYYLQ  141 (206)
T ss_pred             HHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHCCCCC-CCCCCCCHHHHHHHHHHHHHH
T ss_conf             9999999998278899837557525477533469989999986789999986534678-995961399999998899999


Q ss_pred             HHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCE
Q ss_conf             898507703310025410189999998538983
Q gi|254780178|r  233 NVLPILPVERPHYLMGVGTPDDILKSVSYGVDM  265 (378)
Q Consensus       233 ~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDl  265 (378)
                      .+.+.+.+++...+-+-|...-.+.+..+|++.
T Consensus       142 ~i~~~~~~g~~VLvVsHG~~iR~l~~~~~gl~~  174 (206)
T PRK01295        142 EILPRVLRGERVLVAAHGNSLRALIMVLDGLTP  174 (206)
T ss_pred             HHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCH
T ss_conf             999998779969999585799999999809898


No 123
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=31.31  E-value=37  Score=14.48  Aligned_cols=71  Identities=18%  Similarity=0.139  Sum_probs=46.8

Q ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC---HHHHEECCCCHHHHHHHHHHH
Q ss_conf             40234443668999988764222346766413567516789989998985077---033100254101899999985
Q gi|254780178|r  187 GIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILP---VERPHYLMGVGTPDDILKSVS  260 (378)
Q Consensus       187 giVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP---~~kPr~l~G~G~P~~i~~~v~  260 (378)
                      -+|-|+.|.-+.++--+...  +|.-.-||- ++...++.....++++...+|   +++-..+||-|+-+.-..+-+
T Consensus        83 hiIpG~EyEklvr~V~~~~~--dF~~lkig~-PlLy~k~DYe~~v~aik~~~ppl~k~e~~vlmgHGt~h~s~~~Ya  156 (265)
T COG4822          83 HIIPGIEYEKLVREVNKYSN--DFKRLKIGR-PLLYYKNDYEICVEAIKDQIPPLNKDEILVLMGHGTDHHSNAAYA  156 (265)
T ss_pred             EECCCHHHHHHHHHHHHHHH--HHHEEECCC-CEEECHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHH
T ss_conf             21472679999999998763--303146177-315401059999999997668867672799983588751778999


No 124
>TIGR00854 pts-sorbose PTS system, mannose/fructose/sorbose family, IIB component; InterPro: IPR004720 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars.   The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine.    This entry is specific for the IIB components of this family of PTS transporters .; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm.
Probab=30.88  E-value=36  Score=14.60  Aligned_cols=61  Identities=20%  Similarity=0.210  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCH-HHHEECCCCHHHHHHHHHHHCCCCEEE
Q ss_conf             689999887642223467664135675167899899989850770-331002541018999999853898366
Q gi|254780178|r  196 NLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPV-ERPHYLMGVGTPDDILKSVSYGVDMFD  267 (378)
Q Consensus       196 dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~-~kPr~l~G~G~P~~i~~~v~~GvDlFD  267 (378)
                      |.|+.=.+..++.  .|+++.-+++    +.   ++...-.--|. .|-.||  +-+|.+++.+|+-||++=+
T Consensus        40 ~v~~~L~~~~a~~--yG~~v~~~s~----~K---~i~~~H~a~~~~~~i~l~--f~~P~dv~~Lv~~Gv~i~~  101 (152)
T TIGR00854        40 EVRQTLMEIVAPE--YGVKVRFVSL----EK---VIKVIHKAAYEDQKIFLL--FKTPADVLTLVEGGVPIKT  101 (152)
T ss_pred             HHHHHHHHHHHHH--CCCEEEEEEH----HH---HHHHHCCCCCCCCEEEEE--ECCCHHHHHHHHCCCCEEE
T ss_conf             7899999874220--1957999865----14---676618988668579999--7392799899874862303


No 125
>PRK07094 biotin synthase; Provisional
Probab=30.77  E-value=38  Score=14.42  Aligned_cols=74  Identities=20%  Similarity=0.293  Sum_probs=33.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHH---HHHHHCCCC-CCCHHHHHHHHHHHHHC----------CCH-HHHEECCC
Q ss_conf             0554023444366899998876422234---676641356-75167899899989850----------770-33100254
Q gi|254780178|r  184 ALFGIVQGGDNINLRSFSAERLKELDLK---GYAIGGLAV-GEPQEVMLHILSNVLPI----------LPV-ERPHYLMG  248 (378)
Q Consensus       184 ~lfgiVqGG~~~dLR~~Sa~~l~~~~~~---G~aIgGl~~-ge~~~~~~~ii~~~~~~----------LP~-~kPr~l~G  248 (378)
                      .+|.-|.-+...+.|.++.+.+.+.++.   |..   +++ ||+.+.+.+.+....++          +|. +-|..=.-
T Consensus       153 ~~y~~i~p~~t~~~Rl~~l~~~k~~G~~v~sG~i---iGlpGET~edr~~~l~~LreL~~~~v~i~~fiP~~gTPl~~~~  229 (323)
T PRK07094        153 ELYEKLHPGMSFENRIQCLKDLKELGYEVGSGFM---VGLPGQTLEDLADDILFLKELDLDMIGIGPFIPHPDTPLADEK  229 (323)
T ss_pred             HHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEE---ECCCCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCC
T ss_conf             9867758999989999999999983981043027---7989999999999999998379988677255179999988999


Q ss_pred             CHHHHHHHHHHH
Q ss_conf             101899999985
Q gi|254780178|r  249 VGTPDDILKSVS  260 (378)
Q Consensus       249 ~G~P~~i~~~v~  260 (378)
                      .++|++.+..|+
T Consensus       230 ~~~~~~~lr~iA  241 (323)
T PRK07094        230 GGSLELTLKVLA  241 (323)
T ss_pred             CCCHHHHHHHHH
T ss_conf             979999999999


No 126
>PRK05567 inositol-5'-monophosphate dehydrogenase; Reviewed
Probab=30.67  E-value=38  Score=14.41  Aligned_cols=23  Identities=17%  Similarity=0.263  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHHHC---CCHHHHHH
Q ss_conf             999999999999985---99899999
Q gi|254780178|r  340 YYQDLMKEIRSAIAE---DCFVDFAM  362 (378)
Q Consensus       340 ~~~~~~~~iR~aI~~---g~f~~~~~  362 (378)
                      ...+++..+|.+.-.   .++.++.+
T Consensus       429 ~i~~l~gGlrs~m~y~Ga~~i~el~~  454 (486)
T PRK05567        429 IIHQLMGGLRSGMGYTGAATIEELRE  454 (486)
T ss_pred             HHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf             99998777754043778776999985


No 127
>pfam09419 DUF2010 Protein of unknown function. This is a family of proteins which show sequence similarity to the HAD superfamily of hydrolases.
Probab=29.95  E-value=21  Score=16.08  Aligned_cols=37  Identities=16%  Similarity=0.252  Sum_probs=28.1

Q ss_pred             CEEECCCCCCCCCCCHHHHHHCCCCEEE---EEHHHHHHC
Q ss_conf             5741068685688688999860998999---322665738
Q gi|254780178|r   32 AFMPVGTAGTVKAMYFDQVRDLGADVIL---GNAYHLMLR   68 (378)
Q Consensus        32 ~flpv~t~g~v~~lt~~~l~~~g~~~il---~Ntyhl~~~   68 (378)
                      -++|-.+..++.+|+.+.|++.|+++++   .||...+..
T Consensus        16 Ll~P~~~V~sI~~Id~~~Lk~~Gik~lI~D~DNTL~~~~~   55 (166)
T pfam09419        16 LCLPHLTVPTFRQLPIPILKKVGIKAVVLDKDNCLTLPHD   55 (166)
T ss_pred             CCCCCEEECCHHHCCHHHHHHCCCCEEEECCCCCCCCCCC
T ss_conf             4588666086343997787555962899816674057898


No 128
>PRK13124 consensus
Probab=29.58  E-value=40  Score=14.28  Aligned_cols=197  Identities=19%  Similarity=0.162  Sum_probs=91.9

Q ss_pred             CCCEEECCCCCCCCC-CCHHHH---HHCCCCEE-EEEHHHHHHCCC-------HHHHHHCCCCHHHCCCCCCEEECCCCC
Q ss_conf             585741068685688-688999---86099899-932266573876-------899865274201101577224114543
Q gi|254780178|r   30 TPAFMPVGTAGTVKA-MYFDQV---RDLGADVI-LGNAYHLMLRPG-------AERIARLGGLHKFIRWFKPILTDSGGF   97 (378)
Q Consensus        30 TP~flpv~t~g~v~~-lt~~~l---~~~g~~~i-l~Ntyhl~~~pg-------~~~i~~~gGlh~fl~~~~~ilTDSGgf   97 (378)
                      -|+|+|+.+.|-..- .+.+.+   .+.|++++ +.=.|--=.-.|       .+.+++=-.+.+++.+           
T Consensus         8 r~ali~yitaG~P~~e~s~~~~~~l~~~GaDiiElGiPfSDP~ADGpvIq~A~~~AL~~G~~~~~~~~~-----------   76 (257)
T PRK13124          8 KKLFIPFITAGDPDPETTIDLVLALEEAGADILELGIPYSDPLADGPVIQRASKRALNGGMNIVKAMEL-----------   76 (257)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHH-----------
T ss_conf             956898863708998999999999997699999978988887765799999999999769968999999-----------


Q ss_pred             CCCHHHHCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             21012210223333102101445415871299999998732897799601213322115899999998899999998851
Q gi|254780178|r   98 QVMSLSKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAF  177 (378)
Q Consensus        98 Qv~sl~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~  177 (378)
                          +...++..+-.+-+.++++ -......|.+++--...|.|=.+.-|-+.             |....|...|.+. 
T Consensus        77 ----~~~~r~~~~~pivlM~Y~N-~i~~~G~e~F~~~~~~~Gv~GvIipDLP~-------------eE~~~~~~~~~~~-  137 (257)
T PRK13124         77 ----VGKMRKKVTIPIVYFTYYN-PVLQYGLEKFFALARENGIDGLLIPDLPL-------------EESGELQEICDKY-  137 (257)
T ss_pred             ----HHHHHCCCCCCEEEEEHHH-HHHHHHHHHHHHHHHHCCCCEEECCCCCH-------------HHHHHHHHHHHHC-
T ss_conf             ----9985244788889975007-89875799999999975998477789997-------------9999999999866-


Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-CCC---CHHHHHHHHHHHHHCCCHHHHEEC-CCCHHH
Q ss_conf             358886055402344436689999887642223467664135-675---167899899989850770331002-541018
Q gi|254780178|r  178 GNQPGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLA-VGE---PQEVMLHILSNVLPILPVERPHYL-MGVGTP  252 (378)
Q Consensus       178 ~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~-~ge---~~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P  252 (378)
                      .- .--.+..|    .. +.|.+.+-..+. + +-|.++-.+ .|+   ..+...+.+..+...-  +.|..+ ||+.+|
T Consensus       138 gl-~~I~lvaP----Ts-~~Ri~~i~~~s~-g-FiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t--~~Pv~vGFGI~~~  207 (257)
T PRK13124        138 GI-YLIPLVAP----TS-KERIKKIAEQAE-G-FVYCVSSLGVTGVREEIETDLEEFIRTVKQYS--NVPVAVGFGISTP  207 (257)
T ss_pred             CC-CEEEEECC----CC-HHHHHHHHHCCC-C-CEEEEECCCCCCCCCCCHHHHHHHHHHHHHCC--CCCEEEEECCCCH
T ss_conf             87-35788479----96-799999985489-8-38996246667876556088999999998617--9983898446999


Q ss_pred             HHHHHHHHCCCCEEE
Q ss_conf             999999853898366
Q gi|254780178|r  253 DDILKSVSYGVDMFD  267 (378)
Q Consensus       253 ~~i~~~v~~GvDlFD  267 (378)
                      +++- .+..+.|-.-
T Consensus       208 e~v~-~~~~~ADGvI  221 (257)
T PRK13124        208 EQVQ-KMKEIADGVV  221 (257)
T ss_pred             HHHH-HHHHHCCEEE
T ss_conf             9999-9980199999


No 129
>pfam03030 H_PPase Inorganic H+ pyrophosphatase. The H+ pyrophosphatase is an transmembrane proton pump involved in establishing the H+ electrochemical potential difference between the vacuole lumen and the cell cytosol. Vacuolar-type H(+)-translocating inorganic pyrophosphatases have long been considered to be restricted to plants and to a few species of photo-trophic bacteria. However, in recent investigations, these pyrophosphatases have been found in organisms as disparate as thermophilic Archaea and parasitic protists.
Probab=29.56  E-value=20  Score=16.33  Aligned_cols=37  Identities=24%  Similarity=0.500  Sum_probs=23.9

Q ss_pred             HHHHHHHHHCCCHHHHEECCCCHHHHHHHHHH--------HCCCCEEEECC
Q ss_conf             98999898507703310025410189999998--------53898366200
Q gi|254780178|r  228 LHILSNVLPILPVERPHYLMGVGTPDDILKSV--------SYGVDMFDCVM  270 (378)
Q Consensus       228 ~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v--------~~GvDlFD~~~  270 (378)
                      .+++..+-..+|+|-||      +|-.|.+.|        -+|.|+|+|-.
T Consensus       183 ADLVGKVEagIPEDDPR------NPAvIADNVGDNVGDvAGmgADLFESy~  227 (669)
T pfam03030       183 ADLVGKVEAGIPEDDPR------NPAVIADNVGDNVGDVAGMGADLFESYA  227 (669)
T ss_pred             HHHHHHHHCCCCCCCCC------CHHHHHHHHCCCCCCCCCCCCHHHHHHH
T ss_conf             45530241499877898------7067878616553220023411688899


No 130
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=29.39  E-value=40  Score=14.26  Aligned_cols=36  Identities=22%  Similarity=0.379  Sum_probs=23.5

Q ss_pred             HHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCE
Q ss_conf             98999898507703310025410189999998538983
Q gi|254780178|r  228 LHILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDM  265 (378)
Q Consensus       228 ~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDl  265 (378)
                      ++-++++.+.-  +.|..+-|+-+|+|-..|++.|+|-
T Consensus       234 W~di~wlr~~w--~~plvlKGIl~~eDA~~A~~~G~dg  269 (381)
T PRK11197        234 WKDLEWIREFW--DGPMVIKGILDPEDARDAVRFGADG  269 (381)
T ss_pred             HHHHHHHHHHC--CCCEEEECCCCHHHHHHHHHCCCCE
T ss_conf             99999999872--9976785258899999999669988


No 131
>pfam08436 DXP_redisom_C 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal. This domain is found to the C-terminus of pfam02670 domains in bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases which catalyse the formation of 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose-5-phosphate in the presence of NADPH.
Probab=29.35  E-value=27  Score=15.44  Aligned_cols=24  Identities=46%  Similarity=0.595  Sum_probs=14.5

Q ss_pred             CCCEEECCCC-CCCCHHHHCCCCCC
Q ss_conf             7722411454-32101221022333
Q gi|254780178|r   87 FKPILTDSGG-FQVMSLSKLCSIDE  110 (378)
Q Consensus        87 ~~~ilTDSGg-fQv~sl~~~~~~~~  110 (378)
                      ...+||-||| |.-.++....+++.
T Consensus        24 ~kI~LTASGGPF~~~~~~~l~~vt~   48 (84)
T pfam08436        24 EKLILTASGGPFRDWSLEELANVTP   48 (84)
T ss_pred             EEEEEECCCHHHHHHHHHHHCCCCH
T ss_conf             0799975674265015888578679


No 132
>PRK10810 anti-sigma28 factor FlgM; Provisional
Probab=28.11  E-value=42  Score=14.12  Aligned_cols=13  Identities=15%  Similarity=0.368  Sum_probs=5.4

Q ss_pred             HHHHHHHHHCCCH
Q ss_conf             9999999985998
Q gi|254780178|r  345 MKEIRSAIAEDCF  357 (378)
Q Consensus       345 ~~~iR~aI~~g~f  357 (378)
                      .++||+||++|++
T Consensus        64 Ve~ik~AI~~G~L   76 (98)
T PRK10810         64 VEALKQAIRNGEL   76 (98)
T ss_pred             HHHHHHHHHCCCC
T ss_conf             9999999985970


No 133
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=27.68  E-value=43  Score=14.07  Aligned_cols=31  Identities=23%  Similarity=0.175  Sum_probs=19.7

Q ss_pred             CCCCHHHHHHHHHHHCCCCEEEECCEEECCC
Q ss_conf             2541018999999853898366200000233
Q gi|254780178|r  246 LMGVGTPDDILKSVSYGVDMFDCVMPTRAGR  276 (378)
Q Consensus       246 l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar  276 (378)
                      ..|-=++..+..-...|||.+-+.++|..++
T Consensus       239 aSGgIt~~ni~~yA~tGVD~IS~galths~~  269 (280)
T COG0157         239 ASGGITLENIREYAETGVDVISVGALTHSAP  269 (280)
T ss_pred             EECCCCHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf             7589787789998626997998073304775


No 134
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases.  It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=27.66  E-value=43  Score=14.07  Aligned_cols=37  Identities=30%  Similarity=0.333  Sum_probs=26.2

Q ss_pred             HHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCEE
Q ss_conf             989998985077033100254101899999985389836
Q gi|254780178|r  228 LHILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDMF  266 (378)
Q Consensus       228 ~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlF  266 (378)
                      ++-++++.+.-  ..|..+-||-+|+|-..|++.|+|-.
T Consensus       242 W~di~wlr~~w--~~plilKGI~~~eDA~~A~~~G~dgI  278 (383)
T cd03332         242 WEDLAFLREWT--DLPIVLKGILHPDDARRAVEAGVDGV  278 (383)
T ss_pred             HHHHHHHHHHC--CCCEEECCCCCHHHHHHHHHCCCCEE
T ss_conf             89999999876--99853235689999999997599889


No 135
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase; InterPro: IPR010946   This entry represents geranylgeranylglyceryl phosphate synthase which catalyses the first committed step in the synthesis of ether-linked membrane lipids in archaea ..
Probab=27.57  E-value=43  Score=14.06  Aligned_cols=70  Identities=21%  Similarity=0.250  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEE
Q ss_conf             68999988764222346766413--5675167899899989850770331002-54101899999985389836
Q gi|254780178|r  196 NLRSFSAERLKELDLKGYAIGGL--AVGEPQEVMLHILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMF  266 (378)
Q Consensus       196 dLR~~Sa~~l~~~~~~G~aIgGl--~~ge~~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlF  266 (378)
                      +-++..+-+.+.-++.|+-.-=|  .-|-++-...|+|..+++..|. -|.-+ =|+-+|+.=...|..|.|+.
T Consensus       137 ~~~~~A~~Y~LAA~Y~G~~~vYLEAGSGAs~Pv~~e~i~~~k~~~~~-I~LIVGGGIr~~EiA~~~v~aGAd~I  209 (212)
T TIGR01769       137 DKPEIAAAYALAAKYLGFKLVYLEAGSGASEPVSPETISLVKKKISS-IPLIVGGGIRSPEIALKIVLAGADVI  209 (212)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCC-CCEEECCCCCCHHHHHHHHHHCCCEE
T ss_conf             86668999999998741351213105786667866799999985489-72775277588899999997089826


No 136
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=27.55  E-value=43  Score=14.05  Aligned_cols=52  Identities=19%  Similarity=0.185  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHC-CCHHHHEECCCCHHHHHHHHHHHCCCCEEEECCEEECCC
Q ss_conf             7899899989850-770331002541018999999853898366200000233
Q gi|254780178|r  225 EVMLHILSNVLPI-LPVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGR  276 (378)
Q Consensus       225 ~~~~~ii~~~~~~-LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar  276 (378)
                      +++.++++.+... +.+.-..-..|-=++..+......|||.+-...+|..++
T Consensus       215 e~~~~~v~~l~~~~~~~~v~ieaSGGI~~~ni~~ya~tGVD~IS~g~lt~s~~  267 (279)
T PRK08385        215 EEIREVIEALKELGLREKVKIEVSGGITPETIAEYAKLDVDVISLGALTHSVR  267 (279)
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEECCHHHCCCC
T ss_conf             99999999987507689789999789989999999855989998497776996


No 137
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain.  FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2  is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=27.48  E-value=43  Score=14.05  Aligned_cols=37  Identities=27%  Similarity=0.308  Sum_probs=19.5

Q ss_pred             HHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCEE
Q ss_conf             989998985077033100254101899999985389836
Q gi|254780178|r  228 LHILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDMF  266 (378)
Q Consensus       228 ~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlF  266 (378)
                      ++-|.+..+.-  ..|..+-|+-+|+|-..+++.|+|-.
T Consensus       202 w~di~~lr~~~--~~plivKGIl~~~DA~~A~~~G~dgI  238 (344)
T cd02922         202 WDDIKWLRKHT--KLPIVLKGVQTVEDAVLAAEYGVDGI  238 (344)
T ss_pred             HHHHHHHHHHC--CCCEEECCCCCHHHHHHHHHCCCCEE
T ss_conf             99999999866--99701002577999999996599889


No 138
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=27.30  E-value=43  Score=14.02  Aligned_cols=143  Identities=20%  Similarity=0.148  Sum_probs=73.3

Q ss_pred             CCEEEECCC-CCCEEEECHHHHHHHHHHCCCCEEE-EEHHH-C--------------------CCCCCHHHHHHHHHHHH
Q ss_conf             310210144-5415871299999998732897799-60121-3--------------------32211589999999889
Q gi|254780178|r  111 QGVRFRSHI-DGSLYRVSPEESVHIQNLLGSDIQM-QLDEC-L--------------------ALPAEDKELKRAMELSL  167 (378)
Q Consensus       111 ~Gv~f~s~~-dG~~~~ltpe~~i~~q~~lg~DI~~-~LD~~-~--------------------~~~~~~k~~~~sv~rT~  167 (378)
                      -|.+|.|.. -|+-++=+++...+..++-|++|+. ++-.. .                    |-.++-..++ ..-||.
T Consensus        79 ~G~~f~SRL~~GTgky~s~~~~~~ai~aSgaeivTVAlRR~~~~~~~~~~~l~~i~~~~~~~LPNTAGc~ta~-eAvr~a  157 (327)
T PRK11840         79 AGKTFSSRLLVGTGKYKDFEETAAAVEASGAEIVTVAVRRVNVSDPGAPMLTDYIDPKKYTYLPNTAGCFTAE-DAVRTL  157 (327)
T ss_pred             CCEEEEEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCHHHHHCCCCCCEECCCCCCCCCHH-HHHHHH
T ss_conf             9988880178765899999999999998589769999974237888960577641802777998565778899-999999


Q ss_pred             HHHHHHHHHH-----CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH--------------------------HHHH
Q ss_conf             9999998851-----35888605540234443668999988764222346--------------------------7664
Q gi|254780178|r  168 RWAERSLVAF-----GNQPGKALFGIVQGGDNINLRSFSAERLKELDLKG--------------------------YAIG  216 (378)
Q Consensus       168 ~w~~~~~~~~-----~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G--------------------------~aIg  216 (378)
                      +-+++.....     .-.+...|++=      .-.-.+.++.+.+.+|.-                          =.||
T Consensus       158 ~lARe~~~t~~iKLEVi~D~~tL~Pd------~~etl~Aae~Lv~eGF~VlpY~~dDpv~akrLed~Gc~avMPlgsPIG  231 (327)
T PRK11840        158 RLAREAGGWDLVKLEVLGDQKTLYPD------MVETLKAAEVLVKEGFQVMVYCSDDPIAAKRLEDAGAVAVMPLGAPIG  231 (327)
T ss_pred             HHHHHHCCCCEEEEEEECCCCCCCCC------HHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCEEEEECCCCCC
T ss_conf             99998559985899980797667998------589999999999789889887169868999998759838862245234


Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEE
Q ss_conf             135675167899899989850770331002-54101899999985389836
Q gi|254780178|r  217 GLAVGEPQEVMLHILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMF  266 (378)
Q Consensus       217 Gl~~ge~~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlF  266 (378)
                      . ..|-......+++-   +..  +.|..+ -|+|.|.+-..+.++|+|-.
T Consensus       232 S-g~Gi~n~~~i~~i~---e~~--~vpvivDAGiG~pS~A~~aMElG~daV  276 (327)
T PRK11840        232 S-GLGIQNPYTIRLIV---EGA--KVPVLVDAGVGTASDAAVAMELGCDGV  276 (327)
T ss_pred             C-CCCCCCHHHHHHHH---HHC--CCCEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf             7-88868999999999---736--997899579898789999986366666


No 139
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=27.07  E-value=44  Score=14.00  Aligned_cols=111  Identities=21%  Similarity=0.280  Sum_probs=52.2

Q ss_pred             HHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99873289779960121332211589999999889999999885135888605540234443668999988764222346
Q gi|254780178|r  133 HIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKELDLKG  212 (378)
Q Consensus       133 ~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G  212 (378)
                      +..-.-|.|+++ +|.  ....+     +.+..+.+|.++   .+.+  -.    +|-|..-.   .+-+++|.+.+.|+
T Consensus       100 ~~l~~ag~d~i~-IDv--AhG~~-----~~~~~~ik~ir~---~~p~--~~----IiaGNV~T---~e~a~~L~~~GaD~  159 (325)
T cd00381         100 EALVEAGVDVIV-IDS--AHGHS-----VYVIEMIKFIKK---KYPN--VD----VIAGNVVT---AEAARDLIDAGADG  159 (325)
T ss_pred             HHHHHCCCCEEE-EEC--HHCCC-----HHHHHHHHHHHH---HCCC--CC----EEECCCCC---HHHHHHHHHCCCCE
T ss_conf             999976998999-870--00345-----889999999997---6899--75----68645668---99999998669989


Q ss_pred             HHH--HCCC---------CCCCHHHHHHHHHHHHHC-CCHHHHEECC-CCHHHHHHHHHHHCCCCEE
Q ss_conf             766--4135---------675167899899989850-7703310025-4101899999985389836
Q gi|254780178|r  213 YAI--GGLA---------VGEPQEVMLHILSNVLPI-LPVERPHYLM-GVGTPDDILKSVSYGVDMF  266 (378)
Q Consensus       213 ~aI--gGl~---------~ge~~~~~~~ii~~~~~~-LP~~kPr~l~-G~G~P~~i~~~v~~GvDlF  266 (378)
                      .-+  |+=+         +|-|+  +. .|..+... -..+.|.-.- |+-+|-||..|.+.|.|..
T Consensus       160 vkVGiG~GS~CtTr~~tGvG~Pq--~s-ai~~~a~~~~~~~v~iiaDGGi~~~Gdi~KAla~GAd~V  223 (325)
T cd00381         160 VKVGIGPGSICTTRIVTGVGVPQ--AT-AVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAV  223 (325)
T ss_pred             EEECCCCCCCCCCCCCCCCCCCH--HH-HHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHCCCCEE
T ss_conf             99757577776660101788745--88-999999976344985894487331078888875288789


No 140
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=26.33  E-value=38  Score=14.39  Aligned_cols=23  Identities=17%  Similarity=0.094  Sum_probs=14.3

Q ss_pred             EEEECHHHHHHHHHHCCCCEEEE
Q ss_conf             58712999999987328977996
Q gi|254780178|r  123 LYRVSPEESVHIQNLLGSDIQMQ  145 (378)
Q Consensus       123 ~~~ltpe~~i~~q~~lg~DI~~~  145 (378)
                      .+....+-..++...-.+|++|.
T Consensus        73 ~v~~G~~~l~e~a~~~~~d~Vm~   95 (385)
T COG0743          73 EVLVGEEGLCELAAEDDADVVMN   95 (385)
T ss_pred             EEEECHHHHHHHHHCCCCCEEEE
T ss_conf             58643778999984677787742


No 141
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=26.21  E-value=45  Score=13.90  Aligned_cols=120  Identities=13%  Similarity=0.070  Sum_probs=69.0

Q ss_pred             EECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf             71299999998732897799601213322115899999998899999998851358886055402344436689999887
Q gi|254780178|r  125 RVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAER  204 (378)
Q Consensus       125 ~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~  204 (378)
                      ....+..++-....|.|=.+.-|-+.             |....|...|.+. . ..--.|.++    ...+.|.+.+-.
T Consensus       105 ~yG~e~F~~~~~~~GvdGlIipDLP~-------------eE~~~~~~~~~~~-g-l~~I~lvaP----tt~~~Ri~~i~~  165 (263)
T CHL00200        105 HYGINKFIKKISQAGVKGLIIPDLPY-------------EESDYLISVCNLY-N-IELILLIAP----TSSKSRIQKIAR  165 (263)
T ss_pred             HCCHHHHHHHHHHCCCCEEECCCCCH-------------HHHHHHHHHHHHC-C-CCEEEEECC----CCCHHHHHHHHH
T ss_conf             73889999999984998687479997-------------8889999999855-8-621666478----996999999997


Q ss_pred             HHHHHHHHHHHHCCCC-CC---CHHHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEEE
Q ss_conf             6422234676641356-75---167899899989850770331002-541018999999853898366
Q gi|254780178|r  205 LKELDLKGYAIGGLAV-GE---PQEVMLHILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMFD  267 (378)
Q Consensus       205 l~~~~~~G~aIgGl~~-ge---~~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlFD  267 (378)
                      .+ .+ +-|.+.-.++ |.   ..+...+.+..+....  ++|..+ ||+.+|+++-.....|.|-.-
T Consensus       166 ~a-~G-FiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~t--~~Pv~vGFGIs~~e~v~~~~~~~aDGvI  229 (263)
T CHL00200        166 AA-PG-CIYLVSTTGVTGLKTELDKKLKKLIETIKKMT--NKPIILGFGISTSEQIKQIKGWNINGIV  229 (263)
T ss_pred             HC-CC-CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHHCCCCEEE
T ss_conf             28-98-08985336556875445187999999999736--9984873587999999999745999999


No 142
>pfam04777 Evr1_Alr Erv1 / Alr family. Biogenesis of Fe/S clusters involves a number of essential mitochondrial proteins. Erv1p of Saccharomyces cerevisiae mitochondria is required for the maturation of Fe/S proteins in the cytosol. The ALR (augmenter of liver regeneration) represents a mammalian orthologue of yeast Erv1p. Both Erv1p and full-length ALR are located in the mitochondrial intermembrane an d it thought to operate downstream of the mitochondrial ABC transporter.
Probab=26.17  E-value=26  Score=15.48  Aligned_cols=33  Identities=12%  Similarity=0.105  Sum_probs=22.0

Q ss_pred             CCCHHHCCCCHHHHHHH---HHCCCHHHHHHHHHHH
Q ss_conf             69813368898999886---8578508999999999
Q gi|254780178|r  305 SHCSALRDYSRAYLHHL---LRVNESLAGMILSWAN  337 (378)
Q Consensus       305 C~C~~C~~ytraYl~HL---~~~~E~l~~~Ll~iHN  337 (378)
                      -.|..|+.|-..|+...   +++++.+..=|..+||
T Consensus        37 lPC~~C~~h~~~~l~~~~~~~~sr~~l~~wl~~~HN   72 (95)
T pfam04777        37 YPCEECAEHFQKILAKNPPQVSSRDDLSLWLCEAHN   72 (95)
T ss_pred             CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf             486999999999998781427999999999999999


No 143
>KOG1057 consensus
Probab=26.07  E-value=45  Score=13.93  Aligned_cols=102  Identities=20%  Similarity=0.257  Sum_probs=60.7

Q ss_pred             CCHHHHHHHHHHHCCCCEEEECCEE----------ECCCCC--CCCCCCCCHHHHHHHHCC-------------------
Q ss_conf             4101899999985389836620000----------023320--024562100210123223-------------------
Q gi|254780178|r  248 GVGTPDDILKSVSYGVDMFDCVMPT----------RAGRHG--LAFTRFGKINLRNARHID-------------------  296 (378)
Q Consensus       248 G~G~P~~i~~~v~~GvDlFD~~~pt----------r~Ar~G--~~~t~~g~i~l~~~~~~~-------------------  296 (378)
                      |.-+|.-=..|-+||= .|-|.||-          ..-||.  ++-++.|++.++.+.|+.                   
T Consensus       510 GelT~agr~QAeeLGr-~FR~~~~gg~g~gllrLhst~rhDlKIYaSdEgRVqmtAaaFAkgLL~lEgelTpiLvqmVkk  588 (1018)
T KOG1057         510 GELTHAGRYQAEELGR-QFRCDYPGGQGLGLLRLHSTYRHDLKIYASDEGRVQMTAAAFAKGLLALEGELTPILVQMVKK  588 (1018)
T ss_pred             CEECCHHHHHHHHHHH-HHHHCCCCCCCCCEEEEHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf             7726235765999999-997418887774201001445324126854750678889999989986016776899999873


Q ss_pred             CCCCCCCCCCCHHHCCCCHHHHHHHHHCCCHH----HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             68855986698133688989998868578508----9999999999999999999999
Q gi|254780178|r  297 DMRPLDAESHCSALRDYSRAYLHHLLRVNESL----AGMILSWANLAYYQDLMKEIRS  350 (378)
Q Consensus       297 d~~pi~~~C~C~~C~~ytraYl~HL~~~~E~l----~~~Ll~iHNl~~~~~~~~~iR~  350 (378)
                      |.+-||..|+-..|..--+|+||+++++....    .|..++=++...+.+.++.+|.
T Consensus       589 dn~LLD~~~~as~~m~~vK~~L~~ilq~~~~~~~e~~~~~~~P~~~~~l~~~ve~vk~  646 (1018)
T KOG1057         589 DNTLLDDDNAASSYMDKVKARLHEILQAGREFTPEFDWPELMPNPSEVLTQVVELVKN  646 (1018)
T ss_pred             CCHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHH
T ss_conf             1010057630689999999999999866876787666010199676899999999870


No 144
>PRK04053 rps13p 30S ribosomal protein S13P; Reviewed
Probab=25.94  E-value=46  Score=13.86  Aligned_cols=19  Identities=21%  Similarity=0.403  Sum_probs=6.8

Q ss_pred             CCCCHHHHHHHHHHHCCCC
Q ss_conf             2541018999999853898
Q gi|254780178|r  246 LMGVGTPDDILKSVSYGVD  264 (378)
Q Consensus       246 l~G~G~P~~i~~~v~~GvD  264 (378)
                      +.|+|.-.-...|-.+|||
T Consensus        30 IyGIG~~~A~~Ic~~lgId   48 (149)
T PRK04053         30 IKGIGRRTARAIARKLGLD   48 (149)
T ss_pred             CCCCCHHHHHHHHHHHCCC
T ss_conf             1484899999999991899


No 145
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; InterPro: IPR011772    This entry respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions . This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This entry identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologues of this gene are not found in plants which rely solely on the aerobic cyclase.; GO: 0016709 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen NADH or NADPH as one donor and incorporation of one atom of oxygen, 0050661 NADP binding, 0015995 chlorophyll biosynthetic process.
Probab=25.84  E-value=46  Score=13.85  Aligned_cols=111  Identities=18%  Similarity=0.152  Sum_probs=62.4

Q ss_pred             CCCCCEEEECHHHHHHHHHHCCCCEEEE-EHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHH
Q ss_conf             4454158712999999987328977996-012133221158999999988999999988513588860554023444366
Q gi|254780178|r  118 HIDGSLYRVSPEESVHIQNLLGSDIQMQ-LDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNIN  196 (378)
Q Consensus       118 ~~dG~~~~ltpe~~i~~q~~lg~DI~~~-LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~d  196 (378)
                      -+|...-.||-|+..+.....+|||+++ -.--||..       --+++|.+.+.+      ..+|.   -+|-||+++-
T Consensus        43 f~DA~~~~l~de~l~e~lr~~~Pd~v~~GhtaiTp~~-------y~a~~~lk~~rE------~lPN~---~~vlGGihpT  106 (506)
T TIGR02026        43 FLDAMTDPLTDEKLVERLRAHRPDLVLIGHTAITPAI-------YIAEETLKVARE------RLPNA---IIVLGGIHPT  106 (506)
T ss_pred             EEECCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCH-------HHHHHHHHHHHH------HCCHH---HHHHCCCCCC
T ss_conf             7622368887489999997259868997265554201-------899999999986------24435---5342464642


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCCH
Q ss_conf             899998876422234676641356751678998999898507703310025410
Q gi|254780178|r  197 LRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGVG  250 (378)
Q Consensus       197 LR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~G  250 (378)
                      --=.  +-|.+-|-    |+=..=||-.+...+++.+.-..=-.+--+-+-|+.
T Consensus       107 f~f~--~vLt~~Pw----ID~IVRGEGEe~~v~L~~A~e~~n~~~dr~kv~GiA  154 (506)
T TIGR02026       107 FMFR--QVLTEAPW----IDFIVRGEGEEVVVKLIKALENDNDARDRNKVKGIA  154 (506)
T ss_pred             CCHH--HHHCCCCC----EEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHCEEE
T ss_conf             0212--34122882----107982773899999999985367234354503137


No 146
>TIGR03152 cyto_c552_HCOOH formate-dependent cytochrome c nitrite reductase, c552 subunit. Members of this protein family are cytochrome c552, a component of cytochrome c nitrite reductase, which is known more formally as nitrite reductase (cytochrome; ammonia-forming) (EC 1.7.2.2). Nitrate can be reduced by several enzymes. EC 1.7.2.2 reduces nitrite all the way to ammonia, rather than to ammonium hydroxide (nitrite reductase (NAD(P)H), EC 1.7.1.4) or nitric oxide (nitrite reductase (NO-forming), EC 1.7.2.1). Some examples of EC 1.7.2.2 occur in a seven gene system that enables formate-dependent nitrite reduction, but is also found in simpler contexts. Members of this protein family, however, belong to the formate-dependent system.
Probab=25.84  E-value=46  Score=13.85  Aligned_cols=98  Identities=16%  Similarity=0.151  Sum_probs=54.2

Q ss_pred             HHCCCCEEEECCEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCC-CCCCHHHCCCCHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             853898366200000233200245621002101232236885598-6698133688989998868578508999999999
Q gi|254780178|r  259 VSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDA-ESHCSALRDYSRAYLHHLLRVNESLAGMILSWAN  337 (378)
Q Consensus       259 v~~GvDlFD~~~ptr~Ar~G~~~t~~g~i~l~~~~~~~d~~pi~~-~C~C~~C~~ytraYl~HL~~~~E~l~~~Ll~iHN  337 (378)
                      -..||-=-||-+|+.....|..+|+....           +||+. .=.|-+|-+-|..+|+--....----..++..- 
T Consensus       239 ~~~GVsCaDCHMPy~~~~~gk~yTdH~v~-----------SPL~~~~~aC~~CH~~s~e~L~~~V~~~q~~~~~~~~~a-  306 (439)
T TIGR03152       239 GKNNVTCIDCHMPKVQNKDGKVYTDHKVG-----------NPFDRFEDTCANCHTQSKATLQKVVAERKAQVLEMKLKL-  306 (439)
T ss_pred             HHCCCCCCCCCCCCEECCCCCEECCCCCC-----------CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf             42798611049941477998363676367-----------801547889876068889999999999999999999999-


Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             9999999999999998599899999999985
Q gi|254780178|r  338 LAYYQDLMKEIRSAIAEDCFVDFAMQTQENW  368 (378)
Q Consensus       338 l~~~~~~~~~iR~aI~~g~f~~~~~~~~~~~  368 (378)
                      -..+.....+++.+..+|.-++-.++.+...
T Consensus       307 ~~~lv~ah~ea~~a~~aga~~~em~~~l~~~  337 (439)
T TIGR03152       307 EDQIVKAHFEAKAAWDAGATEAEMKPILQDI  337 (439)
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             9999999999999997699999999999999


No 147
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain.  MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=25.80  E-value=46  Score=13.85  Aligned_cols=36  Identities=17%  Similarity=0.220  Sum_probs=22.1

Q ss_pred             HHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCE
Q ss_conf             98999898507703310025410189999998538983
Q gi|254780178|r  228 LHILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDM  265 (378)
Q Consensus       228 ~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDl  265 (378)
                      ++-|.+..+.-  +.|..+-|+-+|+|-..|++.|+|-
T Consensus       225 W~di~wlr~~w--~~plilKGI~~~eDA~~A~~~G~dg  260 (361)
T cd04736         225 WQDLRWLRDLW--PHKLLVKGIVTAEDAKRCIELGADG  260 (361)
T ss_pred             HHHHHHHHHHC--CCCEEEECCCCHHHHHHHHHCCCCE
T ss_conf             99999999866--9974552148999999998769999


No 148
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase; InterPro: IPR010107   This entry represents Glutamate decarboxylase (gad;) it is a pyridoxal 5'-phosphate (PLP)-dependent enzyme, which catalyses the irreversible alpha-decarboxylation of L-glutamate to gamma-aminobutyrate (GABA). This enzyme is widely distributed amongst eukaryotes and prokaryotes, but its function varies in different organisms .   Gad has a crucial role in the vertebrate central nervous system where it is responsible for the synthesis of GABA, the major inhibitory neurotransmitter. In the majority of vertebrates Gad occurs in two isoforms, GAD65 and GAD67, both active at neutral pH . Gad isoforms (GadA and GadB) have also been reported in some bacterial species, including the Gram-negative bacterium  and Gram-positive bacterium .   A unique feature of plant and yeast Gad is the presence of a calmodulin (CaM)-binding domain in the C-terminal region. In Saccharomyces cerevisiae, Gad expression is required for normal oxidative stress tolerance . In plants, Gad is thought to be a stress-adapter chaperonin sensing Ca2+ signals.; GO: 0004351 glutamate decarboxylase activity, 0030170 pyridoxal phosphate binding, 0006536 glutamate metabolic process.
Probab=25.72  E-value=46  Score=13.84  Aligned_cols=176  Identities=22%  Similarity=0.276  Sum_probs=96.8

Q ss_pred             CCEEECCCCCCCCCCCHHHHHH------CCCCEEEEEHHHHHHCC---CHHHHHHCCCCH-HHCCCCCCEEEC--CCCCC
Q ss_conf             8574106868568868899986------09989993226657387---689986527420-110157722411--45432
Q gi|254780178|r   31 PAFMPVGTAGTVKAMYFDQVRD------LGADVILGNAYHLMLRP---GAERIARLGGLH-KFIRWFKPILTD--SGGFQ   98 (378)
Q Consensus        31 P~flpv~t~g~v~~lt~~~l~~------~g~~~il~Ntyhl~~~p---g~~~i~~~gGlh-~fl~~~~~ilTD--SGgfQ   98 (378)
                      +=++|+..|+-. .|+|+++-+      +|+-.||+.||-=-..|   -.+.+.+..-=+ .+-+|+=||=-|  ||||=
T Consensus       177 ~R~VP~~~r~r~-~i~Pe~~~~~vDENTIGV~~ILG~TyTG~yE~v~~lnD~L~~~~~~~PDWsg~d~PiHvDAASGGFi  255 (493)
T TIGR01788       177 LREVPMDKRDRY-VIDPEEVVDLVDENTIGVVAILGTTYTGEYEDVKALNDLLEELNAKTPDWSGWDIPIHVDAASGGFI  255 (493)
T ss_pred             EEEEECCCCCCC-CCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCC
T ss_conf             136720777760-1188999986076752488874723258708889999999997427887477876647744678811


Q ss_pred             CCH------------------HHHCCCCCCCCEEE-ECCCCCCEEEE-----CHHHHHHHHHHCCCCEEE-EEHH-----
Q ss_conf             101------------------22102233331021-01445415871-----299999998732897799-6012-----
Q gi|254780178|r   99 VMS------------------LSKLCSIDEQGVRF-RSHIDGSLYRV-----SPEESVHIQNLLGSDIQM-QLDE-----  148 (378)
Q Consensus        99 v~s------------------l~~~~~~~~~Gv~f-~s~~dG~~~~l-----tpe~~i~~q~~lg~DI~~-~LD~-----  148 (378)
                      +.=                  |..+.+|+-.|..| -.+.+=+.+.+     =||+-|=-..-||.|+-. .|.-     
T Consensus       256 ~PFGfekehmk~~PDl~WDFRLprV~SINvSGHKYGLvYPGvGWViWRd~e~LPeELiF~vnYLGg~~~tFtLNFSrp~~  335 (493)
T TIGR01788       256 APFGFEKEHMKVEPDLEWDFRLPRVKSINVSGHKYGLVYPGVGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPAN  335 (493)
T ss_pred             CCCCCCCCCEEECCCEEECCCCCCEEEECCCCCCCCCCCCCCCEEEECCCCCCHHHCEEECCCCCCCCCCCCCCCCCCCC
T ss_conf             37663534115457126566178246870465512464766126887581137013111011026656543013557623


Q ss_pred             --------HCCC-CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC-CC--CCCHHHHHHHHHHHHHHH
Q ss_conf             --------1332-2115899999998899999998851358886055402-34--443668999988764222
Q gi|254780178|r  149 --------CLAL-PAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIV-QG--GDNINLRSFSAERLKELD  209 (378)
Q Consensus       149 --------~~~~-~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiV-qG--G~~~dLR~~Sa~~l~~~~  209 (378)
                              ...+ ..++..+.+....|.+|+...++...+.++.  |=+| +|  ...-|---+|.+..=+.|
T Consensus       336 qViaQYYnFlRLG~~GYr~i~q~~~~vA~~La~~~~~~sklPG~--Fe~~s~g~~sienDsaPksvkDYWehP  406 (493)
T TIGR01788       336 QVIAQYYNFLRLGREGYRKIMQNLLDVAQYLAEEIAKLSKLPGP--FEILSDGRESIENDSAPKSVKDYWEHP  406 (493)
T ss_pred             CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--EEEEECCCCCCCCCCCCCCHHHHHCCC
T ss_conf             11364466885040134899998999999999999986069984--588717875433456774012331364


No 149
>TIGR01125 TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125; InterPro: IPR005840   This is a family of mainly hypothetical proteins of unknown function. .
Probab=25.58  E-value=46  Score=13.82  Aligned_cols=18  Identities=11%  Similarity=0.154  Sum_probs=9.4

Q ss_pred             CCCCCCHHHHHHHHHHHH
Q ss_conf             332211589999999889
Q gi|254780178|r  150 LALPAEDKELKRAMELSL  167 (378)
Q Consensus       150 ~~~~~~~k~~~~sv~rT~  167 (378)
                      +|......++-|.|.||.
T Consensus       289 iPLQH~sd~ILK~M~R~~  306 (475)
T TIGR01125       289 IPLQHASDRILKLMRRPG  306 (475)
T ss_pred             CCCCCCCHHHHHCCCCCC
T ss_conf             431238737874278996


No 150
>PRK06267 hypothetical protein; Provisional
Probab=25.25  E-value=47  Score=13.78  Aligned_cols=51  Identities=20%  Similarity=0.254  Sum_probs=27.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHH---HHHHHCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             0554023444366899998876422234---67664135675167899899989850
Q gi|254780178|r  184 ALFGIVQGGDNINLRSFSAERLKELDLK---GYAIGGLAVGEPQEVMLHILSNVLPI  237 (378)
Q Consensus       184 ~lfgiVqGG~~~dLR~~Sa~~l~~~~~~---G~aIgGl~~ge~~~~~~~ii~~~~~~  237 (378)
                      .+|.-|.-+...+-|.++.+.+.+.++.   |+.   +++||+.+.+.+.+....++
T Consensus       141 ~ly~~i~p~~s~e~Ri~~l~~lk~~G~e~gsG~i---vGlGET~ed~~~~~~~lkel  194 (324)
T PRK06267        141 KLHEELCPGKPLDKIKEMLKKAKDLGLKTGITII---LGLGETEDDIELLLNLIEEL  194 (324)
T ss_pred             HHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE---EECCCCHHHHHHHHHHHHHC
T ss_conf             8870279999889999999999983983200468---73798899999999999976


No 151
>cd00517 ATPS ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS).  This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS).  In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions.  In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies.  In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate.  ATP sulfurylase can be a monomer, a hom
Probab=24.48  E-value=49  Score=13.69  Aligned_cols=105  Identities=20%  Similarity=0.183  Sum_probs=59.8

Q ss_pred             CCCHHHCCCCCCEEECCCCCCCCHHHHCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHH
Q ss_conf             74201101577224114543210122102233331021014454158712999999987328977996012133221158
Q gi|254780178|r   78 GGLHKFIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDK  157 (378)
Q Consensus        78 gGlh~fl~~~~~ilTDSGgfQv~sl~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k  157 (378)
                      .|+.+|++. |..+ -+|-+.+.....             +.|=....+||++.-+..+..|-+-++++----|.+...+
T Consensus       109 Pgv~~~~~~-g~~~-vgG~i~~~~~~~-------------~~~f~~~~~tP~e~r~~~~~~gw~~VvaFqTRNp~HraHe  173 (356)
T cd00517         109 PGVKMVLES-GDFL-VGGKLEVLERPK-------------FNGFDQYRLTPAELREEFKEKGWDTVVAFQTRNPMHRAHE  173 (356)
T ss_pred             HHHHHHHHC-CCEE-ECCEEEEECCCC-------------CCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHHH
T ss_conf             068999725-9969-814379943666-------------5667000379999999998568865888731899974799


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCEEE-EEC----CCCCCHHHHHHHHHHHHHH
Q ss_conf             99999998899999998851358886055-402----3444366899998876422
Q gi|254780178|r  158 ELKRAMELSLRWAERSLVAFGNQPGKALF-GIV----QGGDNINLRSFSAERLKEL  208 (378)
Q Consensus       158 ~~~~sv~rT~~w~~~~~~~~~~~~~~~lf-giV----qGG~~~dLR~~Sa~~l~~~  208 (378)
                      ++.       ++|.+   ..... ...|. ++|    .|....+.|.+|-+.+.+.
T Consensus       174 ~l~-------~~Ale---~~~~~-~~lli~P~vG~~k~gD~~~~~r~~~y~~l~~~  218 (356)
T cd00517         174 ELM-------KRALE---RLLEN-DGLLLHPLVGWTKPGDVPDEVRMRAYEALLEE  218 (356)
T ss_pred             HHH-------HHHHH---HHCCC-CEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             999-------99999---71438-71899733367888898989999999999970


No 152
>pfam11876 DUF3396 Protein of unknown function (DUF3396). This family of proteins are functionally uncharacterized. This protein is found in bacteria and viruses. Proteins in this family are typically between 302 to 382 amino acids in length.
Probab=24.36  E-value=49  Score=13.67  Aligned_cols=21  Identities=24%  Similarity=0.205  Sum_probs=11.7

Q ss_pred             EECHHHHHHHHHHCCCCEEEE
Q ss_conf             712999999987328977996
Q gi|254780178|r  125 RVSPEESVHIQNLLGSDIQMQ  145 (378)
Q Consensus       125 ~ltpe~~i~~q~~lg~DI~~~  145 (378)
                      .-.|.+|--.|+-.|-||.-+
T Consensus        72 ~~~~~Ey~la~r~pGlDV~~~   92 (208)
T pfam11876        72 PNEPSEYFLAQRYPGLDVGDP   92 (208)
T ss_pred             CCCHHHHHHHHHCCCCCCCCC
T ss_conf             565899999987779877984


No 153
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; InterPro: IPR006276   This group represents cobalamin-independent methionine synthase. A family of uncharacterised archaeal proteins having substantial homology to the C-terminal region of this family, are not included in this group, though they are contained in a larger family of vitamin-B12 independent methionine synthase.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process.
Probab=24.24  E-value=49  Score=13.66  Aligned_cols=14  Identities=36%  Similarity=0.586  Sum_probs=5.1

Q ss_pred             CCCCEEEEEHHHHH
Q ss_conf             09989993226657
Q gi|254780178|r   53 LGADVILGNAYHLM   66 (378)
Q Consensus        53 ~g~~~il~Ntyhl~   66 (378)
                      .|.+.|=+|.|-+|
T Consensus        47 ~G~D~iP~nDFs~Y   60 (778)
T TIGR01371        47 AGVDFIPSNDFSLY   60 (778)
T ss_pred             CCCCEEECCCHHHH
T ss_conf             09827733612366


No 154
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain.  DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=24.23  E-value=49  Score=13.65  Aligned_cols=43  Identities=16%  Similarity=0.292  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEEE
Q ss_conf             7899899989850770331002-541018999999853898366
Q gi|254780178|r  225 EVMLHILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMFD  267 (378)
Q Consensus       225 ~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlFD  267 (378)
                      ..-.+.|..+...++.+.|..= =|+.+++|.++.+..|.|+.-
T Consensus       227 ~~al~~v~~~~~~~~~~i~Iig~GGI~~~~da~e~i~aGA~~Vq  270 (289)
T cd02810         227 PLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQ  270 (289)
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCHHH
T ss_conf             89999999999974999609998993999999999984997999


No 155
>pfam05853 DUF849 Prokaryotic protein of unknown function (DUF849). This family consists of several hypothetical prokaryotic proteins with no known function.
Probab=24.02  E-value=50  Score=13.63  Aligned_cols=132  Identities=17%  Similarity=0.158  Sum_probs=61.3

Q ss_pred             EECHHHHHHHHHHCCCCEEEEEHHHC-CCCCCHHHHHHHHHHHHHHHHHHHHHH---CCCCCCEEEEECCCCCCHHHHHH
Q ss_conf             71299999998732897799601213-322115899999998899999998851---35888605540234443668999
Q gi|254780178|r  125 RVSPEESVHIQNLLGSDIQMQLDECL-ALPAEDKELKRAMELSLRWAERSLVAF---GNQPGKALFGIVQGGDNINLRSF  200 (378)
Q Consensus       125 ~ltpe~~i~~q~~lg~DI~~~LD~~~-~~~~~~k~~~~sv~rT~~w~~~~~~~~---~~~~~~~lfgiVqGG~~~dLR~~  200 (378)
                      ..++|+=++....++||++. ||-.+ ......  -......|..++.++.+..   .-.+.-.+|-+  | .-.-++..
T Consensus        87 ~~~~eeR~~~v~~~~Pd~aS-l~~gs~nf~~~~--~d~v~~n~~~~~~~~~~~~~~~gi~pe~e~yd~--g-~l~~~~~l  160 (274)
T pfam05853        87 GMTVEERLAPVEALRPEMAS-LNMGSMNFGLYS--RDMVFPNTPADVEEFAARMQEAGVKPEFECFDV--G-HLRNAARL  160 (274)
T ss_pred             CCCHHHHHHHHHHCCCCEEE-ECCCCCCCCCCC--CCCEECCCHHHHHHHHHHHHHCCCCEEEEEECH--H-HHHHHHHH
T ss_conf             89888999999860988577-446664356567--772013999999999999998599149999779--9-99999999


Q ss_pred             HHHHHHHHHH-HHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCCHH--HHHHHHHHHCCCCE
Q ss_conf             9887642223-46766413567516789989998985077033100254101--89999998538983
Q gi|254780178|r  201 SAERLKELDL-KGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGVGT--PDDILKSVSYGVDM  265 (378)
Q Consensus       201 Sa~~l~~~~~-~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~G~--P~~i~~~v~~GvDl  265 (378)
                      ..+.+.+-+. .-|.+|- ..|-+..  .+.+...++.||++-+-.+.|+|.  -.-+..++.+|-++
T Consensus       161 ~~~G~l~~p~~~~~vlG~-~~g~~~~--p~~L~~~l~~lp~~~~w~v~~~G~~~~~~~~~A~~~GGhv  225 (274)
T pfam05853       161 LKRGLLKGPLFVQFVLGV-LGGMPAD--PENLLHMLRTLPRGATWSVAGIGRNQLPLAAAAAALGGHV  225 (274)
T ss_pred             HHHCCCCCCCEEEEEECC-CCCCCCC--HHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCE
T ss_conf             970888999579999626-8789999--9999999963878971899951754449999999809964


No 156
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=23.90  E-value=50  Score=13.61  Aligned_cols=30  Identities=23%  Similarity=0.171  Sum_probs=15.3

Q ss_pred             CCCHHHHHHHHHHHCCCCEEEECCEEECCC
Q ss_conf             541018999999853898366200000233
Q gi|254780178|r  247 MGVGTPDDILKSVSYGVDMFDCVMPTRAGR  276 (378)
Q Consensus       247 ~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar  276 (378)
                      .|-=++..+..-...|||.+-..++|..|+
T Consensus       233 SGgI~~~ni~~ya~~GvD~Is~g~lt~s~~  262 (269)
T cd01568         233 SGGITLENIRAYAETGVDVISTGALTHSAP  262 (269)
T ss_pred             ECCCCHHHHHHHHHCCCCEEEECHHHCCCC
T ss_conf             899999999999975999999084005997


No 157
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=23.71  E-value=40  Score=14.26  Aligned_cols=94  Identities=16%  Similarity=0.209  Sum_probs=42.3

Q ss_pred             HHHHHHCCCCCCEEEEECCCCCCHHHHHHHH-----HHHHHHHHHHHHHHC-CCCCCCHHH---HHHHHHHHHH-CCCHH
Q ss_conf             9988513588860554023444366899998-----876422234676641-356751678---9989998985-07703
Q gi|254780178|r  172 RSLVAFGNQPGKALFGIVQGGDNINLRSFSA-----ERLKELDLKGYAIGG-LAVGEPQEV---MLHILSNVLP-ILPVE  241 (378)
Q Consensus       172 ~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa-----~~l~~~~~~G~aIgG-l~~ge~~~~---~~~ii~~~~~-~LP~~  241 (378)
                      +|+.... ..=..++-.--||-+.+.-....     ++..+.|.  +-.|. .++. +...   -+|++++..- .+|.+
T Consensus       153 q~l~~~~-~~i~~i~lTASGGpF~~~~~~~l~~vt~~~al~HP~--W~MG~KIsID-SATmmNK~lEvIEA~~LF~l~~~  228 (379)
T PRK05447        153 QCLPGEN-EGVEKIILTASGGPFRDWPLEELANVTPEQALKHPN--WSMGRKITID-SATMMNKGLEVIEAHWLFGLPYE  228 (379)
T ss_pred             HHHHCCC-CCEEEEEEECCCCHHHHHHHHHHHCCCHHHHHCCCC--CCCCCCCCCH-HHHHHHHHHHHHHHHHHHCCCHH
T ss_conf             9972675-400168995367307665799871879898813989--8788964000-58788889999999998199889


Q ss_pred             HHEECCCCHHHHHHHHHHHCCCCEEEECCEEECC
Q ss_conf             3100254101899999985389836620000023
Q gi|254780178|r  242 RPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAG  275 (378)
Q Consensus       242 kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~A  275 (378)
                      |-..+   =||+.+++++   |..-|-+.-+..+
T Consensus       229 kI~v~---IHpqSiIHs~---V~f~DGs~~a~~~  256 (379)
T PRK05447        229 QIEVV---IHPQSIIHSM---VEYVDGSVLAQLG  256 (379)
T ss_pred             HEEEE---ECCCHHHHEE---EEECCCCCHHHCC
T ss_conf             96667---7721312135---7956974003159


No 158
>pfam01729 QRPTase_C Quinolinate phosphoribosyl transferase, C-terminal domain. Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase EC:2.4.2.19 is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide. The QA substrate is bound between the C-terminal domain of one subunit, and the N-terminal domain of the other. The C-terminal domain has a 7 beta-stranded TIM barrel-like fold.
Probab=23.53  E-value=51  Score=13.57  Aligned_cols=64  Identities=16%  Similarity=0.116  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEE---CCCCHHHHHHHHHHHCCCCEEEECCEEECCC
Q ss_conf             64222346766413567516789989998985077033100---2541018999999853898366200000233
Q gi|254780178|r  205 LKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHY---LMGVGTPDDILKSVSYGVDMFDCVMPTRAGR  276 (378)
Q Consensus       205 l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~---l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar  276 (378)
                      ..+.+++..-++.++    -+++.+.+..+    ....|+.   ..|-=++..|..-.+.|||.+-..+.|..|+
T Consensus        96 a~~~~~d~I~LDn~s----pe~l~~~v~~l----~~~~~~v~iEaSGgI~~~ni~~yA~tGvD~IS~galt~sa~  162 (169)
T pfam01729        96 ALEAGADIIMLDNFS----PEEVREAVEEL----DERAGRVLLEVSGGITLDNVLEYAKTGVDVISVGALTHSVP  162 (169)
T ss_pred             HHHCCCCEEEECCCC----HHHHHHHHHHH----HHHCCCEEEEECCCCCHHHHHHHHHCCCCEEECCHHHCCCC
T ss_conf             984699899977999----99999999999----97589679996189999999999976999998586446997


No 159
>PRK07107 inositol-5-monophosphate dehydrogenase; Validated
Probab=23.46  E-value=51  Score=13.56  Aligned_cols=83  Identities=14%  Similarity=0.032  Sum_probs=51.1

Q ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHHHH
Q ss_conf             58886055402344436689999887642223467664135675167899899989850770331002541018999999
Q gi|254780178|r  179 NQPGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGVGTPDDILKS  258 (378)
Q Consensus       179 ~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~  258 (378)
                      +..++.+.|.--|..  |.. +-++.|.+.++|-..|+- +-|.+ ..+.+.+.++....|..-+...=.+.+++....+
T Consensus       227 D~~grL~VgAAIg~~--d~~-eRa~~Lv~aGvD~lviD~-AhGhs-~~v~~~ik~ik~~~~~~~~i~aGNVaT~~~~~~L  301 (497)
T PRK07107        227 DSSKRYVVGAGINTR--DYE-ERVPALVEAGADVLCIDS-SDGYS-EWQKRTLDYIKEKYGDTVKVGAGNVVDRDGFLYL  301 (497)
T ss_pred             CCCCCEEEEEECCCC--CHH-HHHHHHHHCCCCEEEECC-CCCCH-HHHHHHHHHHHHHCCCCCCCCCCCHHCHHHHHHH
T ss_conf             767888899963777--899-999999985999998034-35352-9999999999986698763414521269999999


Q ss_pred             HHCCCCEE
Q ss_conf             85389836
Q gi|254780178|r  259 VSYGVDMF  266 (378)
Q Consensus       259 v~~GvDlF  266 (378)
                      +..|+|-+
T Consensus       302 ~~aGad~v  309 (497)
T PRK07107        302 AEAGADFV  309 (497)
T ss_pred             HHCCCCEE
T ss_conf             98089868


No 160
>TIGR01464 hemE uroporphyrinogen decarboxylase; InterPro: IPR006361   This entry represents uroporphyrinogen decarboxylase (HemE), which catalyzes the fifth step in the heme biosynthetic pathway, converting uroporphyrinogen III to coproporphyrinogen III by decarboxylating the four acetate side chains of the substrate . This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.   This activity is essential in all organisms, and subnormal activity of URO-D leads to the most common form of porphyria in humans, porphyria cutanea tarda (PCT).; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin biosynthetic process.
Probab=23.07  E-value=52  Score=13.51  Aligned_cols=39  Identities=10%  Similarity=-0.045  Sum_probs=16.2

Q ss_pred             HHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHH
Q ss_conf             999999873289779960121332211589999999889
Q gi|254780178|r  129 EESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSL  167 (378)
Q Consensus       129 e~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~  167 (378)
                      -+|+..|=.-|+|+++.||-+...=++....+=++.=+.
T Consensus       184 ~~YL~~Qv~AGA~avQiFDSWag~Ls~~df~~fv~py~~  222 (351)
T TIGR01464       184 IEYLSEQVKAGAQAVQIFDSWAGALSPEDFEEFVLPYLA  222 (351)
T ss_pred             HHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf             999999886188489996334644798788885088999


No 161
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2.  This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=22.96  E-value=52  Score=13.49  Aligned_cols=24  Identities=25%  Similarity=0.454  Sum_probs=11.4

Q ss_pred             HHEECCCCHHHHHHHHHHHCCCCE
Q ss_conf             310025410189999998538983
Q gi|254780178|r  242 RPHYLMGVGTPDDILKSVSYGVDM  265 (378)
Q Consensus       242 kPr~l~G~G~P~~i~~~v~~GvDl  265 (378)
                      .|..+-|+-+|+|-..|++.|+|-
T Consensus       222 lplilKGI~~~eDA~~A~~~G~dg  245 (351)
T cd04737         222 LPVIVKGIQSPEDADVAINAGADG  245 (351)
T ss_pred             CCEEECCCCCHHHHHHHHHCCCCE
T ss_conf             985323667799999998749988


No 162
>cd00924 Cyt_c_Oxidase_Vb Cytochrome c oxidase subunit Vb.  Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes.  It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane.  The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome.  Found only in eukaryotes, subunit Vb is one of three mammalian subunits that lacks a transmembrane region.  Subunit Vb is located on the matrix side of the membrane and binds the regulatory subunit of protein kinase A.  The abnormally extended conformation is stable only in the CcO assembly.
Probab=22.89  E-value=47  Score=13.79  Aligned_cols=29  Identities=28%  Similarity=0.334  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHCCCCEEEECCEEECCCCCCC
Q ss_conf             0189999998538983662000002332002
Q gi|254780178|r  250 GTPDDILKSVSYGVDMFDCVMPTRAGRHGLA  280 (378)
Q Consensus       250 G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~  280 (378)
                      |.=..-+.+...|+|.||-- |.+..+ |+.
T Consensus        15 GlEr~Ella~~~G~D~fd~~-~~~~~~-GTk   43 (97)
T cd00924          15 GLERKELLAKLEGIDDFDMK-PLKGPF-GTK   43 (97)
T ss_pred             CHHHHHHHHHHCCCCCCCCC-CCCCCC-CCC
T ss_conf             68899999987299822366-663899-976


No 163
>pfam01680 SOR_SNZ SOR/SNZ family. Members of this family are enzymes involved in a new pathway of pyridoxine/pyridoxal 5-phosphate biosynthesis. This family was formerly known as UPF0019.
Probab=22.78  E-value=52  Score=13.47  Aligned_cols=135  Identities=16%  Similarity=0.213  Sum_probs=64.9

Q ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCH-HHHEECCCCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCC-CC
Q ss_conf             23467664135675167899899989850770-33100254101899999985389836620000023320024562-10
Q gi|254780178|r  209 DLKGYAIGGLAVGEPQEVMLHILSNVLPILPV-ERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRF-GK  286 (378)
Q Consensus       209 ~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~-~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t~~-g~  286 (378)
                      |.|.-+=||++-..+-..+.+|...+.  +|. .|.|    +||-.+-.-+=++|||+.|-+         -.||+- ..
T Consensus        46 PadIR~~GGVaRMsdp~~I~eI~~aVs--IPVMAK~R----IGHfvEAqiLEalgVD~IDES---------EVLTpAD~~  110 (209)
T pfam01680        46 PADIRAAGGVARMSDPKMIKEIMNAVS--IPVMAKVR----IGHFVEAQILEAIGVDYIDES---------EVLTPADEF  110 (209)
T ss_pred             CHHHHHCCCEEECCCHHHHHHHHHHEE--CHHEEECC----CCHHHHHHHHHHHCCCCCCCC---------CCCCCCCHH
T ss_conf             976862589233489899999998601--01112013----431899999999588822522---------257777542


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCH--HHCCCCHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf             0210123223688559866981--33688989998868578--5089999999999999999999999998599899999
Q gi|254780178|r  287 INLRNARHIDDMRPLDAESHCS--ALRDYSRAYLHHLLRVN--ESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAM  362 (378)
Q Consensus       287 i~l~~~~~~~d~~pi~~~C~C~--~C~~ytraYl~HL~~~~--E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~  362 (378)
                      .+|+...|+   .|..++|...  +.++-.-  =.-+++++  --.|.+.-+..++...+..++.++. ..+..+..|.+
T Consensus       111 ~HI~K~~F~---vPFVCGarnLGEAlRRI~E--GAaMIRTKGEaGTGnVvEAVrH~R~i~~eI~~l~~-~~~~el~~~Ak  184 (209)
T pfam01680       111 FHIDKKKFT---VPFVCGARNLGEALRRIWE--GAAMIRTKGEAGTGNVVEAVRHMRLMNGEIRRLQN-MSEDELYTVAK  184 (209)
T ss_pred             CCCCCCCCC---CCEEECCCCHHHHHHHHHC--CHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHH
T ss_conf             055410167---7643068873899998870--14213467878987599999999999999999976-99999999999


Q ss_pred             HH
Q ss_conf             99
Q gi|254780178|r  363 QT  364 (378)
Q Consensus       363 ~~  364 (378)
                      ++
T Consensus       185 ~~  186 (209)
T pfam01680       185 EL  186 (209)
T ss_pred             HH
T ss_conf             87


No 164
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria.; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0016021 integral to membrane.
Probab=22.59  E-value=42  Score=14.12  Aligned_cols=33  Identities=24%  Similarity=0.504  Sum_probs=26.2

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHH-HHHHHHHHC
Q ss_conf             554023444366899998876422-234676641
Q gi|254780178|r  185 LFGIVQGGDNINLRSFSAERLKEL-DLKGYAIGG  217 (378)
Q Consensus       185 lfgiVqGG~~~dLR~~Sa~~l~~~-~~~G~aIgG  217 (378)
                      |.|-+-|-+++|||..-.|.+-.. ||.-|++|.
T Consensus       179 L~G~~LGNLD~~LRd~FSk~V~~lIPFFAF~LGN  212 (314)
T TIGR00793       179 LVGFILGNLDPELRDLFSKAVQTLIPFFAFALGN  212 (314)
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9998751688779999988865654578876323


No 165
>pfam00218 IGPS Indole-3-glycerol phosphate synthase.
Probab=22.47  E-value=53  Score=13.43  Aligned_cols=37  Identities=24%  Similarity=0.433  Sum_probs=29.5

Q ss_pred             HHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEEE
Q ss_conf             9989850770331002-541018999999853898366
Q gi|254780178|r  231 LSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMFD  267 (378)
Q Consensus       231 i~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlFD  267 (378)
                      .....+.+|.+....- .|+.+|.++......|+|-|=
T Consensus       199 t~~L~~~ip~~~~~VsESGI~~~~di~~l~~~G~~~~L  236 (254)
T pfam00218       199 TRRLAPMVPEDVLLVAESGISTPEDVEKLAKHGANAFL  236 (254)
T ss_pred             HHHHHHHCCCCCEEEECCCCCCHHHHHHHHHCCCCEEE
T ss_conf             99999558989879983899999999999987999999


No 166
>COG3303 NrfA Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit [Inorganic ion transport and metabolism]
Probab=22.30  E-value=42  Score=14.09  Aligned_cols=67  Identities=25%  Similarity=0.390  Sum_probs=44.0

Q ss_pred             CHHHHHHHHH----HHCCCCEEEECCEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHHHHC
Q ss_conf             1018999999----853898366200000233200245621002101232236885598669813368898999886857
Q gi|254780178|r  249 VGTPDDILKS----VSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDAESHCSALRDYSRAYLHHLLRV  324 (378)
Q Consensus       249 ~G~P~~i~~~----v~~GvDlFD~~~ptr~Ar~G~~~t~~g~i~l~~~~~~~d~~pi~~~C~C~~C~~ytraYl~HL~~~  324 (378)
                      +-||+.=+..    -..||--.||-+|.--...|..+|..-   |.|.  .++|     .-.|--|-.-|++||+-....
T Consensus       281 aQHPe~E~ws~GvHgkNgVtCiDCHMPkVq~a~gK~yTdH~---I~nP--f~~f-----~stCanCH~Qsk~~Lq~~V~~  350 (501)
T COG3303         281 AQHPEYETWSAGVHGKNGVTCIDCHMPKVQNAEGKLYTDHK---IGNP--FDNF-----ASTCANCHTQSKAKLQAVVAE  350 (501)
T ss_pred             CCCCCHHHHHCCCCCCCCCEEEECCCCCCCCCCCCEEECCC---CCCH--HHHH-----HHHHHHHHHHHHHHHHHHHHH
T ss_conf             25862554412333568844674577101477870652133---5786--6789-----988766655349999999999


Q ss_pred             C
Q ss_conf             8
Q gi|254780178|r  325 N  325 (378)
Q Consensus       325 ~  325 (378)
                      .
T Consensus       351 r  351 (501)
T COG3303         351 R  351 (501)
T ss_pred             H
T ss_conf             9


No 167
>PRK00719 alkanesulfonate monooxygenase; Provisional
Probab=22.01  E-value=54  Score=13.37  Aligned_cols=23  Identities=30%  Similarity=0.600  Sum_probs=16.7

Q ss_pred             CHHHHHHHHHH----HCCCCEEEE-CCE
Q ss_conf             10189999998----538983662-000
Q gi|254780178|r  249 VGTPDDILKSV----SYGVDMFDC-VMP  271 (378)
Q Consensus       249 ~G~P~~i~~~v----~~GvDlFD~-~~p  271 (378)
                      ||+|++|...+    ++|||.|-- -+|
T Consensus       304 VGspeqVAd~i~~y~~~Gvd~fiLsg~p  331 (377)
T PRK00719        304 VGDPPTVAARIREYADLGIDTFILSGYP  331 (377)
T ss_pred             ECCHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf             5898999999999997499789973899


No 168
>PRK04180 pyridoxine biosynthesis protein; Provisional
Probab=21.84  E-value=55  Score=13.35  Aligned_cols=31  Identities=26%  Similarity=0.490  Sum_probs=25.9

Q ss_pred             CCCHHHHHHHHHHHCCCC-------EEEECCEEECCCC
Q ss_conf             541018999999853898-------3662000002332
Q gi|254780178|r  247 MGVGTPDDILKSVSYGVD-------MFDCVMPTRAGRH  277 (378)
Q Consensus       247 ~G~G~P~~i~~~v~~GvD-------lFD~~~ptr~Ar~  277 (378)
                      =|+.+|-|-.....+|+|       +|.|.-|.+-|+.
T Consensus       212 GGiATPADAALmMqLG~dGVFVGSGIFKS~dP~~rA~A  249 (293)
T PRK04180        212 GGIATPADAALMMQLGADGVFVGSGIFKSGNPEKRAKA  249 (293)
T ss_pred             CCCCCCHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHH
T ss_conf             77578056999987178746754543467998899999


No 169
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=21.67  E-value=55  Score=13.33  Aligned_cols=120  Identities=14%  Similarity=0.080  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf             99999998732897799601213322115899999998899999998851358886055402344436689999887642
Q gi|254780178|r  128 PEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKE  207 (378)
Q Consensus       128 pe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~  207 (378)
                      ++...+.....|.|++..-+.++......       ....+++++      ...+..++-.+ ......++.+    ..+
T Consensus        73 ~~~~~~~~~~~g~d~v~i~~~~~~~~~~~-------~~~~~~~~~------~~~~~~vi~~~-~~~~~~~~~~----a~~  134 (200)
T cd04722          73 VDIAAAAARAAGADGVEIHGAVGYLARED-------LELIRELRE------AVPDVKVVVKL-SPTGELAAAA----AEE  134 (200)
T ss_pred             CHHHHHHHHHCCCCEEEECCCCCCCCCCH-------HHHHHHHHH------HCCCCEEEEEC-CCCCHHHHHH----HHH
T ss_conf             75999999983999899789996543006-------899999998------44896499968-9999999999----998


Q ss_pred             HHHHHHHHHCCCC-C---CCHHHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEEE
Q ss_conf             2234676641356-7---5167899899989850770331002-541018999999853898366
Q gi|254780178|r  208 LDLKGYAIGGLAV-G---EPQEVMLHILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMFD  267 (378)
Q Consensus       208 ~~~~G~aIgGl~~-g---e~~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlFD  267 (378)
                      .+.+.+.+.+... +   +....-...+..+..  -.+.|... .|+++|+++..+.++|.|.+.
T Consensus       135 ~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ipvi~~gGi~~~~~~~~~~~~gAdgv~  197 (200)
T cd04722         135 AGVDEVGLGNGGGGGGGRDAVPIADLLLILAKR--GSKVPVIAGGGINDPEDAAEALALGADGVI  197 (200)
T ss_pred             CCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHH--HCCCCEEEECCCCCHHHHHHHHHCCCCEEE
T ss_conf             099799970874678887666116899999998--579998997587999999999985998898


No 170
>KOG4175 consensus
Probab=21.13  E-value=56  Score=13.25  Aligned_cols=113  Identities=17%  Similarity=0.160  Sum_probs=55.9

Q ss_pred             ECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             12999999987328977996012133221158999999988999999988513588860554023444366899998876
Q gi|254780178|r  126 VSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERL  205 (378)
Q Consensus       126 ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l  205 (378)
                      ..-|.+|+..+.-|..=++..|.++      +       .+...-.+|.+     ..-++.+.| -..-.|.|..-.-+.
T Consensus       110 yG~e~~iq~ak~aGanGfiivDlPp------E-------Ea~~~Rne~~k-----~gislvpLv-aPsTtdeRmell~~~  170 (268)
T KOG4175         110 YGVENYIQVAKNAGANGFIIVDLPP------E-------EAETLRNEARK-----HGISLVPLV-APSTTDERMELLVEA  170 (268)
T ss_pred             HHHHHHHHHHHHCCCCCEEECCCCH------H-------HHHHHHHHHHH-----CCCEEEEEE-CCCCHHHHHHHHHHH
T ss_conf             4078999999965877458506886------8-------98999999986-----492489741-799808999999986


Q ss_pred             HHHHHHHHHHHCCCCCCCHH----HHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHH
Q ss_conf             42223467664135675167----899899989850770331002-54101899999985
Q gi|254780178|r  206 KELDLKGYAIGGLAVGEPQE----VMLHILSNVLPILPVERPHYL-MGVGTPDDILKSVS  260 (378)
Q Consensus       206 ~~~~~~G~aIgGl~~ge~~~----~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~  260 (378)
                      +  +-+-|.++...+-...+    ....++..+.. --.++|.-+ ||+.+|+.+-..-+
T Consensus       171 a--dsFiYvVSrmG~TG~~~svn~~l~~L~qrvrk-~t~dtPlAVGFGvst~EHf~qVgs  227 (268)
T KOG4175         171 A--DSFIYVVSRMGVTGTRESVNEKLQSLLQRVRK-ATGDTPLAVGFGVSTPEHFKQVGS  227 (268)
T ss_pred             H--CCEEEEEEECCCCCCHHHHHHHHHHHHHHHHH-HCCCCCEEEEECCCCHHHHHHHHH
T ss_conf             3--25599987145666177788889999999998-648986267506687899876520


No 171
>KOG3985 consensus
Probab=21.00  E-value=31  Score=14.98  Aligned_cols=19  Identities=16%  Similarity=0.324  Sum_probs=8.9

Q ss_pred             HHHHHHCCCCEEEEEHHHC
Q ss_conf             9998732897799601213
Q gi|254780178|r  132 VHIQNLLGSDIQMQLDECL  150 (378)
Q Consensus       132 i~~q~~lg~DI~~~LD~~~  150 (378)
                      |-..+.+|.+.++.+.-|-
T Consensus        78 iwALk~~gc~~ii~~tAcG   96 (283)
T KOG3985          78 IWALKSLGCTAIISFTACG   96 (283)
T ss_pred             HHHHHHCCCCEEEEEECCC
T ss_conf             8999857974899850124


No 172
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=20.98  E-value=52  Score=13.47  Aligned_cols=35  Identities=23%  Similarity=0.317  Sum_probs=24.5

Q ss_pred             HHHEECCC--CHHHHHHHHHHHCCCCEEEECCEEECCC
Q ss_conf             33100254--1018999999853898366200000233
Q gi|254780178|r  241 ERPHYLMG--VGTPDDILKSVSYGVDMFDCVMPTRAGR  276 (378)
Q Consensus       241 ~kPr~l~G--~G~P~~i~~~v~~GvDlFD~~~ptr~Ar  276 (378)
                      ++|.-+.|  +|+|...+.++.+|+|-| |..|....+
T Consensus       662 g~~VsvCGEmAgdp~~~~lL~glG~~~l-Sm~~~~i~~  698 (748)
T PRK11061        662 GLPVRLCGEMAGDPMGALLLIGLGYRHL-SMNGRSVAR  698 (748)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCEE-EECHHHHHH
T ss_conf             9959981333569757999996699826-567877899


No 173
>KOG2833 consensus
Probab=20.82  E-value=57  Score=13.21  Aligned_cols=49  Identities=18%  Similarity=0.238  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHH
Q ss_conf             88764222346766413567516789989998985077033100254101899999985
Q gi|254780178|r  202 AERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGVGTPDDILKSVS  260 (378)
Q Consensus       202 a~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~  260 (378)
                      .+.+.++||.+||=   -...+.+++..+..   +..|+=  +|+--.++  .|+..|+
T Consensus       240 ~eaI~~rDF~~FA~---lTm~DSNqFHAvcl---DT~PPI--~YmNd~S~--~iI~~vh  288 (395)
T KOG2833         240 REAIRERDFESFAK---LTMKDSNQFHAVCL---DTFPPI--FYLNDTSW--RIISLVH  288 (395)
T ss_pred             HHHHHHCCHHHHHH---HHHHCCHHHHHHHH---CCCCCE--EEECCCCH--HHHHHHH
T ss_conf             99998657788777---77613124564423---158974--78536407--9999999


No 174
>pfam00478 IMPDH IMP dehydrogenase / GMP reductase domain. This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family.
Probab=20.73  E-value=57  Score=13.20  Aligned_cols=17  Identities=29%  Similarity=0.530  Sum_probs=9.8

Q ss_pred             CCHHHHHHHHHHHCCCC
Q ss_conf             41018999999853898
Q gi|254780178|r  248 GVGTPDDILKSVSYGVD  264 (378)
Q Consensus       248 G~G~P~~i~~~v~~GvD  264 (378)
                      |+-+|=||..|++.|.|
T Consensus       334 Gi~~sGDi~KAlaaGAd  350 (467)
T pfam00478       334 GIRYSGDIAKALAAGAS  350 (467)
T ss_pred             CCCCHHHHHHHHHCCCC
T ss_conf             62330489999872898


No 175
>KOG1606 consensus
Probab=20.60  E-value=37  Score=14.46  Aligned_cols=31  Identities=32%  Similarity=0.506  Sum_probs=25.9

Q ss_pred             CCCHHHHHHHHHHHCCCC-------EEEECCEEECCCC
Q ss_conf             541018999999853898-------3662000002332
Q gi|254780178|r  247 MGVGTPDDILKSVSYGVD-------MFDCVMPTRAGRH  277 (378)
Q Consensus       247 ~G~G~P~~i~~~v~~GvD-------lFD~~~ptr~Ar~  277 (378)
                      =|+.+|.|-.....||+|       +|+|.-|.+.||.
T Consensus       216 GGvaTPADAALmMQLGCdGVFVGSgiFks~dP~k~a~a  253 (296)
T KOG1606         216 GGVATPADAALMMQLGCDGVFVGSGIFKSGDPVKRARA  253 (296)
T ss_pred             CCCCCHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHH
T ss_conf             67588167999998089848865542368988999999


No 176
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP,  present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=20.57  E-value=58  Score=13.18  Aligned_cols=31  Identities=32%  Similarity=0.530  Sum_probs=26.0

Q ss_pred             CCCHHHHHHHHHHHCCCC-------EEEECCEEECCCC
Q ss_conf             541018999999853898-------3662000002332
Q gi|254780178|r  247 MGVGTPDDILKSVSYGVD-------MFDCVMPTRAGRH  277 (378)
Q Consensus       247 ~G~G~P~~i~~~v~~GvD-------lFD~~~ptr~Ar~  277 (378)
                      =|+.+|-|-.....+|+|       +|.|.-|.+-|+.
T Consensus       203 GGiATPADAALmMqLG~dGVFVGSGIFKS~dP~krA~A  240 (283)
T cd04727         203 GGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARA  240 (283)
T ss_pred             CCCCCHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHH
T ss_conf             78588377999997289878877654578999999999


No 177
>PTZ00134 40S ribosomal protein S18; Provisional
Probab=20.44  E-value=58  Score=13.16  Aligned_cols=18  Identities=28%  Similarity=0.364  Sum_probs=6.0

Q ss_pred             CCCHHHHHHHHHHHCCCC
Q ss_conf             541018999999853898
Q gi|254780178|r  247 MGVGTPDDILKSVSYGVD  264 (378)
Q Consensus       247 ~G~G~P~~i~~~v~~GvD  264 (378)
                      .|+|...-..-|-.+|||
T Consensus        36 ~GIG~~~A~~Ic~~~gid   53 (154)
T PTZ00134         36 KGIGRRFATVVCKQAGVD   53 (154)
T ss_pred             CCCCHHHHHHHHHHCCCC
T ss_conf             064899999999980989


No 178
>TIGR01718 Uridine-psphlse uridine phosphorylase; InterPro: IPR010058   This entry represents a family of bacterial and archaeal uridine phosphorylases unrelated to the mammalian enzymes of the same name. The Escherichia coli , Salmonella  and Klebsiella  genes have been characterised. Sequences from Clostridium, Streptomyces, Treponema, Aeropyrum and Pyrobaculum are also included in this family, but it does not include related sequences from Halobacterium, which are more distantly related and represent enzymes with a slightly different substrate specificity. Also distantly related is a clade of archaeal sequences which are related to the DeoD family of inosine phosphorylases (IPR004402 from INTERPRO) as they are to these uridine phosphorylases. This clade includes a characterised protein from Sulfolobus solfataricus which has been miss-named as a methylthioadenosine phosphorylase, but which acts on inosine and guanosine - it is unclear whether uridine has been evaluated as a substrate .; GO: 0004850 uridine phosphorylase activity, 0009166 nucleotide catabolic process, 0005737 cytoplasm.
Probab=20.41  E-value=54  Score=13.36  Aligned_cols=11  Identities=27%  Similarity=0.425  Sum_probs=4.1

Q ss_pred             HHHHHCCCCEE
Q ss_conf             99985389836
Q gi|254780178|r  256 LKSVSYGVDMF  266 (378)
Q Consensus       256 ~~~v~~GvDlF  266 (378)
                      =+++.+|+|+|
T Consensus        74 EEL~~lGa~TF   84 (248)
T TIGR01718        74 EELLYLGADTF   84 (248)
T ss_pred             HHHHHHCCCEE
T ss_conf             99997340125


No 179
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=20.41  E-value=58  Score=13.15  Aligned_cols=101  Identities=14%  Similarity=0.217  Sum_probs=45.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCC---HH-----HHHHHHHHHHHHHHH--HHHHHCCCCCC--
Q ss_conf             1589999999889999999885135888605540234443---66-----899998876422234--67664135675--
Q gi|254780178|r  155 EDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDN---IN-----LRSFSAERLKELDLK--GYAIGGLAVGE--  222 (378)
Q Consensus       155 ~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~---~d-----LR~~Sa~~l~~~~~~--G~aIgGl~~ge--  222 (378)
                      |..-.++-+.+|.+-.+.|...--..  -.-.|.|.|..+   .+     --.+..+.+.+.++|  ..+||-.+.-.  
T Consensus       117 S~lp~eeNI~~Tk~vv~~Ah~~gv~V--EaElG~igG~ed~~~~~~~~yT~Peea~~Fv~~TgvD~LAvaiGt~HG~Yk~  194 (321)
T PRK07084        117 SHLPYEENVALTKKVVEYAHQFDVTV--EGELGVLAGIEDEVSAEHHTYTQPEEVEDFVTKTGVDSLAISIGTSHGAFKF  194 (321)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCEE--EEEEECCCCCCCCCCCCCHHCCCHHHHHHHHHHHCCCEEEEECCHHCCCCCC
T ss_conf             97999999999999999972639969--9975034675667666402059999999999986998586420100367667


Q ss_pred             -----CHHHHHHHHHHHHHCCCHHHHEECCCCH-HHHHHHHH
Q ss_conf             -----1678998999898507703310025410-18999999
Q gi|254780178|r  223 -----PQEVMLHILSNVLPILPVERPHYLMGVG-TPDDILKS  258 (378)
Q Consensus       223 -----~~~~~~~ii~~~~~~LP~~kPr~l~G~G-~P~~i~~~  258 (378)
                           .....++.+..+...+| +-|..|.|.. .|.+++..
T Consensus       195 ~~~~~~p~L~~d~L~~I~~~v~-~vPLVLHGgS~~p~~~v~~  235 (321)
T PRK07084        195 KPGECPPPLRFDILAEIEKRIP-GFPIVLHGASSVPQELVET  235 (321)
T ss_pred             CCCCCCCCCCHHHHHHHHHHCC-CCCEEEECCCCCCHHHHHH
T ss_conf             8888874436999999998577-9986852899882788777


No 180
>TIGR01762 chlorin-enz chlorinating enzymes; InterPro: IPR010092   This entry represents a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula . SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae , . CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in P. syringae ..
Probab=20.34  E-value=59  Score=13.15  Aligned_cols=31  Identities=16%  Similarity=0.216  Sum_probs=22.3

Q ss_pred             EECHHHHHHHHHHCCCCEEEEEHHHCCCCCC
Q ss_conf             7129999999873289779960121332211
Q gi|254780178|r  125 RVSPEESVHIQNLLGSDIQMQLDECLALPAE  155 (378)
Q Consensus       125 ~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~  155 (378)
                      ..-||.+=++.-.||||++.=-.+..|-..+
T Consensus        75 i~rp~I~hRV~SiLGpnVlCWRteffPKYPG  105 (293)
T TIGR01762        75 ISRPEIAHRVSSILGPNVLCWRTEFFPKYPG  105 (293)
T ss_pred             CCCCCHHCCHHHCCCCCHHEECCCCCCCCCC
T ss_conf             1475110100101388600000257788753


No 181
>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]
Probab=20.33  E-value=58  Score=13.18  Aligned_cols=17  Identities=29%  Similarity=0.540  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHHHHHCCC
Q ss_conf             87642223467664135
Q gi|254780178|r  203 ERLKELDLKGYAIGGLA  219 (378)
Q Consensus       203 ~~l~~~~~~G~aIgGl~  219 (378)
                      +++..+.|||+.|-|-+
T Consensus        93 eeVk~~~FDG~IiTGAP  109 (307)
T COG1897          93 EEVKDQKFDGLIITGAP  109 (307)
T ss_pred             HHHHHCCCCCEEEECCC
T ss_conf             98864546715983885


No 182
>KOG0604 consensus
Probab=20.23  E-value=46  Score=13.86  Aligned_cols=69  Identities=19%  Similarity=0.209  Sum_probs=46.1

Q ss_pred             EECCEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             620000023320024562100210123223688559866981336889899988685785089999999999999
Q gi|254780178|r  267 DCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDAESHCSALRDYSRAYLHHLLRVNESLAGMILSWANLAYY  341 (378)
Q Consensus       267 D~~~ptr~Ar~G~~~t~~g~i~l~~~~~~~d~~pi~~~C~C~~C~~ytraYl~HL~~~~E~l~~~Ll~iHNl~~~  341 (378)
                      =|-||--|..||.++++.=+-.|++..|..-.    +..+|-  +.-.+--|+-|++++.....++-..-|.-|.
T Consensus       257 LCGyPPFYS~hg~aispgMk~rI~~gqy~FP~----pEWs~V--Se~aKdlIR~LLkt~PteRlTI~~~m~hpwi  325 (400)
T KOG0604         257 LCGYPPFYSNHGLAISPGMKRRIRTGQYEFPE----PEWSCV--SEAAKDLIRKLLKTEPTERLTIEEVMDHPWI  325 (400)
T ss_pred             HCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC----HHHHHH--HHHHHHHHHHHHCCCCHHCEEHHHHHCCCHH
T ss_conf             51798501367865780077776506777998----046677--7999999999862890330258876448201


No 183
>COG3411 Ferredoxin [Energy production and conversion]
Probab=20.12  E-value=59  Score=13.11  Aligned_cols=40  Identities=25%  Similarity=0.373  Sum_probs=28.8

Q ss_pred             EEECCCCCCCCHHHHCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHH
Q ss_conf             241145432101221022333310210144541587129999999873
Q gi|254780178|r   90 ILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNL  137 (378)
Q Consensus        90 ilTDSGgfQv~sl~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~  137 (378)
                      -.|+||=+-+..++...-+-.+||||+        .++|+..=++.+.
T Consensus         4 ~~t~tgCl~~C~~gPvl~vYpegvWY~--------~V~p~~a~rIv~~   43 (64)
T COG3411           4 RVTRTGCLGVCQDGPVLVVYPEGVWYT--------RVDPEDARRIVQS   43 (64)
T ss_pred             EEEECCHHHHHCCCCEEEEECCCEEEE--------CCCHHHHHHHHHH
T ss_conf             884132055655598799935874682--------1698999999999


No 184
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=20.11  E-value=22  Score=15.96  Aligned_cols=34  Identities=18%  Similarity=0.419  Sum_probs=26.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHH-HHHHHHHHHC
Q ss_conf             055402344436689999887642-2234676641
Q gi|254780178|r  184 ALFGIVQGGDNINLRSFSAERLKE-LDLKGYAIGG  217 (378)
Q Consensus       184 ~lfgiVqGG~~~dLR~~Sa~~l~~-~~~~G~aIgG  217 (378)
                      .+.|.+-|-.++|+|+.......- .+|.+|++|.
T Consensus       170 lliG~ilGNLD~~~r~fl~~~~~~lIpF~~FaLGa  204 (308)
T PRK12460        170 LVLGMILGNLDPDMRDFLTKGGPLLIPFFAFALGA  204 (308)
T ss_pred             HHHHHHHHCCCHHHHHHHCCCCCEEEEHHHHHHCC
T ss_conf             99999663688899998725787352041564027


No 185
>PRK05665 amidotransferase; Provisional
Probab=20.05  E-value=59  Score=13.10  Aligned_cols=159  Identities=14%  Similarity=0.217  Sum_probs=71.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCHHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHC
Q ss_conf             0554023444366899998876422234676641--35675167899899989850770331002541018999999853
Q gi|254780178|r  184 ALFGIVQGGDNINLRSFSAERLKELDLKGYAIGG--LAVGEPQEVMLHILSNVLPILPVERPHYLMGVGTPDDILKSVSY  261 (378)
Q Consensus       184 ~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgG--l~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~  261 (378)
                      ..|-+++|-...++          .+++||.|.|  .++.++..=+.+..+++.......+|  ++|+=-=++++ |-++
T Consensus        42 ~~~~v~~ge~P~~~----------~~~dg~vITGS~~~vyd~~pWi~~L~~~i~~~~~~~~p--ilGICfGHQli-A~AL  108 (240)
T PRK05665         42 VVYNVVQGDYPADD----------EKFDAYLVTGSKADSFGTDPWIQTLKTYLLKLYERGDK--LLGVCFGHQLL-ALLL  108 (240)
T ss_pred             EEEEEECCCCCCCH----------HHCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCC--EEEEEHHHHHH-HHHH
T ss_conf             99970068799897----------78789999589874689967699999999999876999--89994436888-8860


Q ss_pred             CCCEEEECC-------EEECCCCCCCCCCC-CCHHHHHHHHCCCCCCCCCC---------C---------CCHHHC---C
Q ss_conf             898366200-------00023320024562-10021012322368855986---------6---------981336---8
Q gi|254780178|r  262 GVDMFDCVM-------PTRAGRHGLAFTRF-GKINLRNARHIDDMRPLDAE---------S---------HCSALR---D  312 (378)
Q Consensus       262 GvDlFD~~~-------ptr~Ar~G~~~t~~-g~i~l~~~~~~~d~~pi~~~---------C---------~C~~C~---~  312 (378)
                      |-.+--+..       ++.....+..+... ..+++. ..+.+...-+-++         |         ..++.+   .
T Consensus       109 GG~V~~~~~Gw~vG~~~~~~~~~~~~~~~~~~~~~l~-~~H~D~V~~lP~ga~~Lass~~cp~q~~~~~~~~~~~Q~HPE  187 (240)
T PRK05665        109 GGKAERASQGWGVGIHRYQLAAHAPWMSPAVTELTLL-ISHQDQVTALPEGATVIASSDFCPNAAYHIRDQVLCFQGHPE  187 (240)
T ss_pred             CCEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCEEE-EEECCEEEECCCCEEEEEECCCCCHHHEECCCCEEEEECCCC
T ss_conf             9836127997366679988758774335875640799-772242785799848998679983334262786899916968


Q ss_pred             CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHH
Q ss_conf             8989998868578508999999999999999999999999859----989999999998
Q gi|254780178|r  313 YSRAYLHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAED----CFVDFAMQTQEN  367 (378)
Q Consensus       313 ytraYl~HL~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g----~f~~~~~~~~~~  367 (378)
                      ||+.|.+.|+....-    .       +=.+..+..++++.+.    .+.+|..+|+++
T Consensus       188 f~~~~~~~ll~~R~~----~-------i~~~~~~~a~~sl~~~~D~~~~a~~i~~Fl~~  235 (240)
T PRK05665        188 FVHDYSRALLDLRQE----H-------LGEEVYSKGVASLAHDHQGTLVAEWMMRFVAQ  235 (240)
T ss_pred             CCHHHHHHHHHHHHH----H-------CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf             799999999999776----3-------69999999999706887589999999999842


Done!