HHsearch alignment of GI: 254780178 and MMDB domain: 1iq8_A_1-358

>1iq8_A (A:1-358) Archaeosine tRNA-guanine transglycosylase; (alpha/beta)8 barrel, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=100.00  E-value=0  Score=672.32  Aligned_cols=335  Identities=24%  Similarity=0.345  Sum_probs=320.0

Q ss_pred             CCCCCEEEEEEECCCCEEEEEEECCEEEECCCEEECCCCCCCCCCCHHHHHHCCCCEEEEEHHHHHHCCCHHHHHHCCCC
Q ss_conf             98870499997649932799987887540585741068685688688999860998999322665738768998652742
Q gi|254780178|r    1 MDKNFHFNLKAVSGSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNAYHLMLRPGAERIARLGGL   80 (378)
Q Consensus         1 m~~~~~F~i~~~~~~aR~G~L~t~~g~i~TP~flpv~t~g~v~~lt~~~l~~~g~~~il~Ntyhl~~~pg~~~i~~~gGl   80 (378)
                      |++||+|+|.+++++||+|+|.++||+|+||+||||+++|+++ ++|+++++++++++++|+||++++|+.+.+++.+||
T Consensus         4 ~~~~m~F~v~~~~~~aR~G~L~~~~~~i~TP~fip~t~~g~~~-lt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl   82 (358)
T 1iq8_A            4 GDKMLKFEIKARDGAGRIGKLEVNGKKIETPAIMPVVNPKQMV-VEPKELEKMGFEIIITNSYIIYKDEELRRKALELGI   82 (358)
T ss_dssp             --CCEEEEEEEEETTEEEEEEEETTEEEEESEEEEBCCSSSCS-SCHHHHHHTTCCEEEEEHHHHHHCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEEECCCCCCEEEEEECCCEEECCCEEEEECCCEEE-ECHHHHHHHCCCEEEEEHHHCCCCCCHHHHHHCCCH
T ss_conf             7861699998643862438998199236189463444385403-479999983899997102224658646665640887


Q ss_pred             HHHCCCCCCEEECCCCCCCCHHHHCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHH
Q ss_conf             01101577224114543210122102233331021014454158712999999987328977996012133221158999
Q gi|254780178|r   81 HKFIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELK  160 (378)
Q Consensus        81 h~fl~~~~~ilTDSGgfQv~sl~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~  160 (378)
                      |+|++|+++++||||+||++|+|..                   .+|||+++++|+.+||||+++||+++++++++|+++
T Consensus        83 ~~f~~~~~~iltdSg~~~~~s~G~~-------------------~lt~e~~~~~~~~~~pDi~v~ldd~~~~~~~~k~~~  143 (358)
T 1iq8_A           83 HRMLDYNGIIEVDSGSFQLMKYGSI-------------------EVSNREIIEFQHRIGVDIGTFLDIPTPPDAPREQAV  143 (358)
T ss_dssp             HHHHTCCSEEEEECSTTHHHHSSCC-------------------SSCHHHHHHHHHHTTCSBBCCCCCCCCTTCCHHHHH
T ss_pred             HHHCCCCCCEECCCCHHHHEECCCC-------------------CCCCHHHEEEHHHCCCCCEEECCCCCCCCCCHHHHH
T ss_conf             8870899973616754776166554-------------------668543266520268760677667789997799999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH---HHHHHHHHHHC
Q ss_conf             999988999999988513588860554023444366899998876422234676641356751678---99899989850
Q gi|254780178|r  161 RAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEV---MLHILSNVLPI  237 (378)
Q Consensus       161 ~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~---~~~ii~~~~~~  237 (378)
                      ++|+||.+|+++|+..+    .+++||+||||.+.|+|++|++++.+.+++||+++|++.+++.++   +.+++.++++.
T Consensus       144 k~v~rT~~w~~~~~~~~----~~~~~~~i~Gg~~~~lr~~s~~~~~~~~~~~~~i~g~~~~~~~~~~~~ll~~i~~~~~~  219 (358)
T 1iq8_A          144 KELEITLSRAREAEEIK----EIPMNATIQGSTYTDLRRYAARRLSSMNFEIHPIGGVVPLLESYRFRDVVDIVISSKMA  219 (358)
T ss_dssp             HHHHHHHHHHHHHHHHC----CSCBBCCBCCTTCHHHHHHHHHHHHHSCCSBEEECSCHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH----CCCCCCEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             99999999999876510----04544233266655799999998751899777755656554257899999998751135


Q ss_pred             CCHHHHEECCCCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHCCCCHHH
Q ss_conf             77033100254101899999985389836620000023320024562100210123223688559866981336889899
Q gi|254780178|r  238 LPVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDAESHCSALRDYSRAY  317 (378)
Q Consensus       238 LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t~~g~i~l~~~~~~~d~~pi~~~C~C~~C~~ytraY  317 (378)
                      ||++||||++|+|+|++|+.+|++|||+|||++|++.|++|+|+|++|.+||++.+|.        +|+||+|++|||||
T Consensus       220 lp~~kp~~l~g~g~P~~i~~~v~lGvD~fDs~~~~~~a~~G~~l~~~~~i~l~~~~~~--------~C~C~~C~~~tray  291 (358)
T 1iq8_A          220 LRPDRPVHLFGAGHPIVFALAVAMGVDLFDSASYALYAKDDRYMTPEGTKRLDELDYF--------PCSCPVCSKYTPQE  291 (358)
T ss_dssp             SCTTSCEEETTCCCGGGHHHHHHTTCCEEEESHHHHHHHTTEEEETTEEEEGGGCSSC--------CCCSTTTTTCCHHH
T ss_pred             CCCCCCHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCCEECCCCCCCCCCCCCC--------CCCCHHHCCCCHHH
T ss_conf             8765540004778667788998328873033117788616823678886215346789--------99981213058999


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf             98868578508999999999999999999999999859989999999998532
Q gi|254780178|r  318 LHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQENWKK  370 (378)
Q Consensus       318 l~HL~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~~~~~~~  370 (378)
                      ||||++++|+   +||++||+++|.+|+++||+||++|+|++|+++|.+.|+.
T Consensus       292 ihhL~~~~e~---~ll~~HNl~~~~~~~~~iR~~i~~~~~~~~~~~~~~~~~~  341 (358)
T 1iq8_A          292 LREMPKEERT---RLLALHNLWVIKEEIKRVKQAIKEGELWRLVDERARSHPK  341 (358)
T ss_dssp             HTTSCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHH
T ss_pred             HHHHHHCCCC---CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHH
T ss_conf             9987536740---0899999999999999999999869999999999876989