Query gi|254780178|ref|YP_003064591.1| queuine tRNA-ribosyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 378
No_of_seqs 151 out of 1891
Neff 6.3
Searched_HMMs 23785
Date Mon May 23 10:25:41 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780178.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ash_A Queuine tRNA-ribosyltra 100.0 0 0 899.1 33.6 370 3-374 11-380 (381)
2 3bld_A Queuine tRNA-ribosyltra 100.0 0 0 854.9 32.6 371 2-372 11-385 (386)
3 1iq8_A Archaeosine tRNA-guanin 100.0 0 0 758.7 22.3 331 2-367 5-338 (582)
4 1rqb_A Transcarboxylase 5S sub 94.3 0.3 1.3E-05 27.1 13.3 219 130-377 121-359 (539)
5 2nx9_A Oxaloacetate decarboxyl 92.9 0.51 2.1E-05 25.5 9.5 137 129-280 103-244 (464)
6 3fkr_A L-2-keto-3-deoxyarabona 92.7 0.17 7.1E-06 28.7 5.2 17 129-145 32-48 (309)
7 3m5v_A DHDPS, dihydrodipicolin 91.5 0.34 1.4E-05 26.7 5.5 22 250-271 193-214 (301)
8 1xky_A Dihydrodipicolinate syn 91.0 0.45 1.9E-05 25.9 5.8 18 129-146 36-53 (301)
9 2rfg_A Dihydrodipicolinate syn 90.2 0.41 1.7E-05 26.1 4.9 15 131-145 87-101 (297)
10 2ehh_A DHDPS, dihydrodipicolin 89.3 0.67 2.8E-05 24.7 5.5 23 249-271 185-207 (294)
11 2vc6_A MOSA, dihydrodipicolina 88.9 0.86 3.6E-05 24.0 5.8 23 249-271 185-207 (292)
12 3flu_A DHDPS, dihydrodipicolin 87.6 1.3 5.4E-05 22.8 6.0 35 235-272 180-214 (297)
13 2wkj_A N-acetylneuraminate lya 87.5 0.96 4E-05 23.7 5.3 22 248-269 194-215 (303)
14 1xxx_A DHDPS, dihydrodipicolin 87.3 0.85 3.6E-05 24.0 4.9 14 132-145 102-115 (303)
15 2v9d_A YAGE; dihydrodipicolini 87.2 1.2 5.1E-05 23.0 5.7 18 129-146 116-133 (343)
16 2r8w_A AGR_C_1641P; APC7498, d 87.2 1.2 4.9E-05 23.1 5.6 18 129-146 58-75 (332)
17 3a5f_A Dihydrodipicolinate syn 86.9 1.2 5E-05 23.0 5.5 29 244-272 180-208 (291)
18 2ftp_A Hydroxymethylglutaryl-C 86.7 1.6 6.7E-05 22.2 9.4 143 129-272 86-238 (302)
19 3noe_A DAP-A, dihydrodipicolin 86.6 1.6 6.6E-05 22.2 6.0 33 244-276 180-212 (292)
20 3bg3_A Pyruvate carboxylase, m 84.7 2 8.4E-05 21.5 11.2 90 190-280 255-348 (718)
21 3ewb_X 2-isopropylmalate synth 84.5 2 8.6E-05 21.5 10.0 100 183-282 136-242 (293)
22 3daq_A DHDPS, dihydrodipicolin 83.7 1.3 5.6E-05 22.7 4.5 29 243-271 181-209 (292)
23 2yxg_A DHDPS, dihydrodipicolin 82.6 2.1 8.7E-05 21.4 5.1 18 129-146 85-102 (289)
24 3e96_A Dihydrodipicolinate syn 81.2 2.7 0.00011 20.6 5.7 18 129-146 36-53 (316)
25 1o5k_A DHDPS, dihydrodipicolin 81.1 2.2 9.3E-05 21.2 4.9 29 243-271 194-222 (306)
26 3dz1_A Dihydrodipicolinate syn 80.9 2.8 0.00012 20.6 5.9 17 129-145 32-48 (313)
27 3cpr_A Dihydrodipicolinate syn 80.4 2.9 0.00012 20.5 6.1 18 129-146 101-118 (304)
28 3ble_A Citramalate synthase fr 79.8 3 0.00013 20.3 8.2 147 127-282 97-258 (337)
29 2hmc_A AGR_L_411P, dihydrodipi 78.6 3.3 0.00014 20.1 5.7 13 133-145 112-124 (344)
30 3h5d_A DHDPS, dihydrodipicolin 78.3 3.3 0.00014 20.0 5.3 27 245-271 187-213 (311)
31 3d0c_A Dihydrodipicolinate syn 78.3 3.3 0.00014 20.0 6.1 38 234-271 179-216 (314)
32 2ojp_A DHDPS, dihydrodipicolin 78.3 3.3 0.00014 20.0 6.1 23 249-271 185-207 (292)
33 3eb2_A Putative dihydrodipicol 76.4 3.8 0.00016 19.7 5.8 16 131-146 91-106 (300)
34 1w3i_A EDA, 2-keto-3-deoxy glu 73.9 4.3 0.00018 19.3 5.8 18 129-146 81-98 (293)
35 3b4u_A Dihydrodipicolinate syn 73.1 4.5 0.00019 19.1 6.9 23 249-271 192-214 (294)
36 2nuw_A 2-keto-3-deoxygluconate 72.8 4.6 0.00019 19.1 6.1 19 128-146 80-98 (288)
37 3eeg_A 2-isopropylmalate synth 72.2 4.7 0.0002 19.0 8.1 98 184-282 138-243 (325)
38 1f6k_A N-acetylneuraminate lya 71.8 4.9 0.0002 18.9 5.0 18 129-146 89-106 (293)
39 1ydn_A Hydroxymethylglutaryl-C 69.2 5.5 0.00023 18.6 10.0 139 125-271 78-233 (295)
40 1rd5_A Tryptophan synthase alp 68.1 5.8 0.00024 18.4 6.7 109 136-267 115-228 (262)
41 1ydo_A HMG-COA lyase; TIM-barr 66.8 6.1 0.00026 18.3 8.3 77 193-271 154-235 (307)
42 2cw6_A Hydroxymethylglutaryl-C 64.9 6.7 0.00028 18.0 9.8 74 196-271 156-234 (298)
43 2r91_A 2-keto-3-deoxy-(6-phosp 61.7 7.6 0.00032 17.6 6.1 16 131-146 82-97 (286)
44 1nvm_A HOA, 4-hydroxy-2-oxoval 58.8 8.5 0.00036 17.3 12.4 138 130-282 97-239 (345)
45 2cw2_A Superoxide dismutase 1; 56.8 9.1 0.00038 17.1 4.6 38 14-52 16-56 (226)
46 1m6j_A TIM, TPI, triosephospha 56.8 7.5 0.00031 17.7 3.1 24 209-234 234-257 (261)
47 1mo0_A TIM, triosephosphate is 54.6 9.3 0.00039 17.1 3.3 24 208-234 243-266 (275)
48 2v5b_A Triosephosphate isomera 53.5 9.2 0.00039 17.1 3.1 12 209-220 221-232 (244)
49 2pcq_A Putative dihidrodipicol 52.3 11 0.00045 16.6 4.5 17 254-270 180-196 (283)
50 2ztj_A Homocitrate synthase; ( 51.8 11 0.00046 16.6 10.6 95 184-279 132-231 (382)
51 3krs_A Triosephosphate isomera 48.2 11 0.00046 16.6 2.8 23 208-233 247-269 (271)
52 1vhc_A Putative KHG/KDPG aldol 48.1 9.2 0.00039 17.1 2.4 66 219-293 95-172 (224)
53 2cw3_A Pmsod2, iron superoxide 47.1 13 0.00054 16.1 3.7 14 261-274 238-251 (280)
54 1geq_A Tryptophan synthase alp 47.0 13 0.00054 16.1 8.3 120 125-267 94-218 (248)
55 2j27_A Triosephosphate isomera 46.5 9.5 0.0004 17.0 2.3 22 209-233 227-248 (250)
56 1o5x_A TIM, triosephosphate is 45.8 8.7 0.00037 17.2 2.0 25 206-233 222-246 (248)
57 2dp3_A Triosephosphate isomera 44.4 14 0.00059 15.8 3.0 23 208-233 229-251 (257)
58 1wbh_A KHG/KDPG aldolase; lyas 44.0 11 0.00045 16.6 2.3 46 219-273 94-139 (214)
59 2nv1_A Pyridoxal biosynthesis 43.2 15 0.00062 15.7 3.5 47 229-277 197-253 (305)
60 3gvg_A Triosephosphate isomera 42.6 15 0.00063 15.6 4.9 11 209-219 254-264 (283)
61 2hl7_A Cytochrome C-type bioge 42.3 11 0.00048 16.4 2.2 49 303-369 25-73 (84)
62 2hwg_A Phosphoenolpyruvate-pro 41.7 16 0.00065 15.6 2.8 34 241-275 496-531 (575)
63 3lab_A Putative KDPG (2-keto-3 41.7 12 0.00051 16.3 2.2 29 244-273 114-142 (217)
64 1a9x_B Carbamoyl phosphate syn 41.5 11 0.00048 16.5 2.1 69 201-274 223-291 (379)
65 2vef_A Dihydropteroate synthas 40.7 16 0.00068 15.5 5.1 105 115-234 20-128 (314)
66 1gte_A Dihydropyrimidine dehyd 40.4 16 0.00068 15.4 7.8 86 179-266 631-732 (1025)
67 1mxs_A KDPG aldolase; 2-keto-3 40.1 14 0.00058 15.9 2.3 40 229-273 110-149 (225)
68 1me8_A Inosine-5'-monophosphat 39.7 17 0.0007 15.4 5.5 81 182-267 230-310 (503)
69 1b9b_A TIM, protein (triosepho 39.6 12 0.0005 16.3 1.9 24 209-235 228-251 (255)
70 1pl4_A Superoxide dismutase [M 39.5 17 0.0007 15.3 3.6 19 34-52 7-25 (198)
71 1wa3_A 2-keto-3-deoxy-6-phosph 39.2 17 0.0007 15.4 2.6 46 219-273 89-134 (205)
72 2yw3_A 4-hydroxy-2-oxoglutarat 39.1 14 0.00059 15.8 2.2 72 183-273 62-134 (207)
73 2wqd_A Phosphoenolpyruvate-pro 38.8 13 0.00056 16.0 2.1 36 240-276 497-534 (572)
74 1yya_A Triosephosphate isomera 38.1 18 0.00074 15.2 5.4 75 150-233 173-248 (250)
75 1vbg_A Pyruvate,orthophosphate 36.1 19 0.00079 15.0 7.9 23 244-266 538-560 (876)
76 1gox_A (S)-2-hydroxy-acid oxid 35.9 19 0.0008 15.0 3.1 48 228-275 267-315 (370)
77 1vrd_A Inosine-5'-monophosphat 35.5 19 0.00081 14.9 6.0 22 341-362 437-461 (494)
78 1xm3_A Thiazole biosynthesis p 35.3 19 0.00082 14.9 4.9 218 21-302 4-252 (264)
79 2htm_A Thiazole biosynthesis p 35.2 16 0.00066 15.5 2.0 24 242-265 179-203 (268)
80 1x1o_A Nicotinate-nucleotide p 34.4 20 0.00084 14.8 2.4 31 233-264 188-218 (286)
81 2gpc_A Iron superoxide dismuta 33.8 20 0.00086 14.7 2.6 19 34-52 7-26 (194)
82 3igs_A N-acetylmannosamine-6-p 33.0 7.8 0.00033 17.6 0.1 29 239-267 179-208 (232)
83 2btm_A TIM, protein (triosepho 32.8 21 0.00089 14.6 4.5 11 209-219 226-236 (252)
84 3ks6_A Glycerophosphoryl diest 32.3 18 0.00077 15.1 1.9 36 239-274 202-237 (250)
85 1ccw_A Protein (glutamate muta 31.7 22 0.00093 14.5 2.8 21 125-145 40-60 (137)
86 1wv2_A Thiazole moeity, thiazo 31.2 18 0.00077 15.1 1.8 193 21-276 11-230 (265)
87 3l0g_A Nicotinate-nucleotide p 31.1 20 0.00084 14.8 1.9 17 248-264 213-229 (300)
88 1x38_A Beta-D-glucan exohydrol 30.1 24 0.00099 14.3 5.5 75 78-172 270-355 (602)
89 1qop_A Tryptophan synthase alp 28.9 25 0.001 14.2 7.2 120 125-267 108-232 (268)
90 2pz0_A Glycerophosphoryl diest 28.9 19 0.0008 15.0 1.5 37 240-276 210-246 (252)
91 2jbm_A Nicotinate-nucleotide p 28.5 16 0.00066 15.5 1.0 37 234-271 190-228 (299)
92 1jr8_A ERV2 protein, mitochond 27.5 11 0.00048 16.5 0.2 34 304-337 48-84 (117)
93 1o4u_A Type II quinolic acid p 27.0 9.9 0.00041 16.9 -0.2 63 229-292 181-254 (285)
94 1ad1_A DHPS, dihydropteroate s 26.8 27 0.0011 14.0 6.4 54 116-170 14-70 (266)
95 2nzl_A Hydroxyacid oxidase 1; 26.6 27 0.0011 13.9 3.0 49 223-275 293-342 (392)
96 2b7n_A Probable nicotinate-nuc 26.5 24 0.001 14.3 1.7 29 235-264 176-204 (273)
97 3nav_A Tryptophan synthase alp 26.4 27 0.0011 13.9 9.6 120 125-267 111-235 (271)
98 2vxn_A Triosephosphate isomera 26.4 27 0.0011 13.9 2.6 23 208-233 227-249 (251)
99 1ney_A TIM, triosephosphate is 26.3 27 0.0011 13.9 2.2 73 150-232 171-244 (247)
100 2yzr_A Pyridoxal biosynthesis 25.7 28 0.0012 13.8 3.5 50 226-277 227-286 (330)
101 2nyb_A Superoxide dismutase [F 25.0 29 0.0012 13.8 4.5 19 34-52 7-25 (192)
102 1uer_A SOD, superoxide dismuta 24.9 29 0.0012 13.7 4.7 19 34-52 8-26 (191)
103 1kbl_A PPDK, pyruvate phosphat 24.7 29 0.0012 13.7 9.1 23 244-266 534-556 (873)
104 2i9e_A Triosephosphate isomera 24.6 29 0.0012 13.7 2.5 28 209-240 224-251 (259)
105 1xg4_A Probable methylisocitra 24.5 30 0.0012 13.7 3.9 56 203-267 174-233 (295)
106 3gwn_A Probable FAD-linked sul 24.4 10 0.00042 16.8 -0.5 35 304-338 46-88 (114)
107 1r2r_A TIM, triosephosphate is 24.3 30 0.0012 13.7 2.5 22 208-232 224-245 (248)
108 1qpo_A Quinolinate acid phosph 24.3 30 0.0013 13.7 2.8 31 246-276 246-276 (284)
109 3gwl_A P14, FAD-linked sulfhyd 23.6 15 0.00061 15.7 0.1 34 304-337 44-80 (106)
110 1p4c_A L(+)-mandelate dehydrog 23.4 27 0.0011 13.9 1.5 74 242-320 279-355 (380)
111 1tre_A Triosephosphate isomera 23.4 31 0.0013 13.5 4.9 42 184-234 207-249 (255)
112 3c2e_A Nicotinate-nucleotide p 23.3 13 0.00055 16.1 -0.2 32 234-266 192-223 (294)
113 1tb3_A Hydroxyacid oxidase 3; 22.6 32 0.0013 13.5 2.8 45 231-275 262-307 (352)
114 2bg5_A Enzyme I, phosphoenolpy 22.3 32 0.0014 13.4 3.0 37 239-276 245-283 (324)
115 1aj0_A DHPS, dihydropteroate s 22.0 33 0.0014 13.4 4.5 51 116-167 26-79 (282)
116 1rpx_A Protein (ribulose-phosp 21.9 33 0.0014 13.4 4.9 128 124-269 76-207 (230)
117 2eja_A URO-D, UPD, uroporphyri 21.8 33 0.0014 13.3 8.8 20 250-269 240-259 (338)
118 2hj3_A Sulfhydryl oxidase ERV1 21.6 15 0.00062 15.7 -0.2 56 304-370 50-108 (125)
119 1my6_A Iron (III) superoxide d 21.4 34 0.0014 13.3 3.8 19 34-52 7-26 (199)
120 3jxp_A Coenzyme PQQ synthesis 21.1 21 0.00087 14.7 0.5 10 4-13 2-11 (321)
121 3mbg_A FAD-linked sulfhydryl o 20.9 18 0.00075 15.2 0.1 56 304-370 73-131 (139)
122 1qap_A Quinolinic acid phospho 20.9 35 0.0015 13.2 3.8 39 238-276 249-287 (296)
123 2oog_A Glycerophosphoryl diest 20.6 35 0.0015 13.2 2.1 37 239-275 239-275 (287)
124 1eye_A DHPS 1, dihydropteroate 20.2 36 0.0015 13.1 3.8 51 116-167 17-70 (280)
No 1
>2ash_A Queuine tRNA-ribosyltransferase; TM1561, tRNA-guanine, structural genomics, joint center for structural genomics, JCSG; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=0 Score=899.15 Aligned_cols=370 Identities=43% Similarity=0.746 Sum_probs=363.3
Q ss_pred CCCEEEEEEECCCCEEEEEEECCEEEECCCEEECCCCCCCCCCCHHHHHHCCCCEEEEEHHHHHHCCCHHHHHHCCCCHH
Q ss_conf 87049999764993279998788754058574106868568868899986099899932266573876899865274201
Q gi|254780178|r 3 KNFHFNLKAVSGSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNAYHLMLRPGAERIARLGGLHK 82 (378)
Q Consensus 3 ~~~~F~i~~~~~~aR~G~L~t~~g~i~TP~flpv~t~g~v~~lt~~~l~~~g~~~il~Ntyhl~~~pg~~~i~~~gGlh~ 82 (378)
..|+|+|++++++||+|+|.|+||+|+||+||||+|+|+||+|+||+|+++|++++++||||++++||.+++++.||||+
T Consensus 11 ~~m~F~i~~~~~~AR~G~L~~~~g~i~TP~fmpv~t~g~v~~ltpd~l~~~g~~~il~Ntyhl~~~pg~~~~~~~gGlh~ 90 (381)
T 2ash_A 11 HHMEFEVKKTFGKARLGVMKLHHGAVETPVFMPVGTNASVKLLTPRDLEEAGAEIILSNTFHLMLKPGVEIIKLHRGLHN 90 (381)
T ss_dssp --CEEEEEEEETTEEEEEEEETTEEEEESEEEEEESSSSCTTCCHHHHHHHTCSCEEECCHHHHHTTCHHHHHHTTSHHH
T ss_pred CCEEEEEEEEECCEEEEEEEECCEEEECCEEEEECCCCCCCCCCHHHHHHHCCCEEEECHHHHHHCCCHHHHHHHCCHHH
T ss_conf 51599998605872158999799776599577604778588469999997189889502466651886056676388555
Q ss_pred HCCCCCCEEECCCCCCCCHHHHCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHH
Q ss_conf 10157722411454321012210223333102101445415871299999998732897799601213322115899999
Q gi|254780178|r 83 FIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRA 162 (378)
Q Consensus 83 fl~~~~~ilTDSGgfQv~sl~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~s 162 (378)
||+|++++||||||||++|+++. +++++||.|+|++||+++.+|||++|++|+.|||||+|+||+|++++++++++++|
T Consensus 91 f~~~~~~iltdSggfq~~sl~~~-~~~~~gv~f~s~~~g~~~~ltpe~~~~~q~~lg~DI~~~ld~~~~~~~~~~~~~~s 169 (381)
T 2ash_A 91 FMGWKRPILTDSGGFQVFSLPKI-RIDDEGVVFRSPIDGSKVFLNPEISMEVQIALGSDICMVFDHCPVPDADYEEVKEA 169 (381)
T ss_dssp HHTCCSCEEECCCHHHHHTSTTC-EECSSCEEEECTTTCCEEEECHHHHHHHHHHHTCSEEECCCCCCC--CCHHHHHHH
T ss_pred HHHCCCCEEECCCCCCCCCCCCC-CCCCCEEEEECCCCCCEEECCHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHH
T ss_conf 76447861213576654324776-53677159843678925766899999999970998899998579997678999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 99889999999885135888605540234443668999988764222346766413567516789989998985077033
Q gi|254780178|r 163 MELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVER 242 (378)
Q Consensus 163 v~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~k 242 (378)
++||++|++||++++.+ ++|+||||||||.++|||++|++++.+++|+||+|||++++++++++.+++..+.+.||++|
T Consensus 170 ~~rT~rw~~~~~~~~~~-~~q~lfgiVqGG~~~dLR~~sa~~l~~~~~~G~aigGl~~~e~~~~~~~~v~~~~~~LP~~k 248 (381)
T 2ash_A 170 TERTYRWALRSKKAFKT-ENQALFGIVQGGIYPDLRRESALQLTSIGFDGYAIGGLSIGEERSLTLEMTEVTVEFLPEDK 248 (381)
T ss_dssp HHHHHHHHHHHHHHCCC-SSCEEEEEECCTTCHHHHHHHHHHHHTTCCSEEEECSCSSSSCHHHHHHHHHHHHTTSCTTS
T ss_pred HHHHHHHHHHHHHHCCC-CCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 99999999865543046-61227754537678899999999986179887998765567651012233100355577540
Q ss_pred HEECCCCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHHH
Q ss_conf 10025410189999998538983662000002332002456210021012322368855986698133688989998868
Q gi|254780178|r 243 PHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDAESHCSALRDYSRAYLHHLL 322 (378)
Q Consensus 243 Pr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t~~g~i~l~~~~~~~d~~pi~~~C~C~~C~~ytraYl~HL~ 322 (378)
||||||+|+|++|+.+|++|||||||++|+|+||+|+|||.+|.+||++++|++|++||+++|+||||++|||||||||+
T Consensus 249 Pr~l~GvG~P~~il~~V~~GvD~FD~~~ptr~Ar~G~alt~~g~~~l~~~~~~~D~~Pl~~~C~C~tC~~~traYlhHL~ 328 (381)
T 2ash_A 249 PRYFMGGGSPELILELVDRGVDMFDSVFPTRIARHGTALTWNGKLNLKASYNKRSLEPVDERCGCYTCKNFTRSYIHHLF 328 (381)
T ss_dssp CEEECSCCCHHHHHHHHTTTCCEEEESHHHHHHHTTEEEETTEEEETTSGGGTTCCSCSCTTCCSHHHHHCCHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHCCCCEEECCCCHHHHHCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHH
T ss_conf 15326899999999999749885430551034427845634785444441002478997989899143704999998674
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 5785089999999999999999999999998599899999999985327998
Q gi|254780178|r 323 RVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQENWKKGDIP 374 (378)
Q Consensus 323 ~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~~~~~~~~~~~ 374 (378)
+++||||++||++|||++|.+||++||+||++|+|++|+++|+++|++++++
T Consensus 329 ~~~E~l~~~LltiHNl~~~~~~~~~iR~aI~~g~f~~~~~~f~~~y~~~~~~ 380 (381)
T 2ash_A 329 DRGEVLGQILLTIHNINFMISLMKEVRRSIESGTFKELKSKVVEVYSSGGVN 380 (381)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTC-----
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
T ss_conf 1781789999999999999999999999998599999999999997528988
No 2
>3bld_A Queuine tRNA-ribosyltransferase; TGT, PREQ1, glycosyltransferase, metal-binding, queuosine biosynthesis, tRNA processing, zinc; HET: PRF; 1.19A {Zymomonas mobilis} PDB: 3bl3_A* 1ozq_A* 1ozm_A* 1r5y_A* 1enu_A* 1f3e_A* 1k4h_A* 1n2v_A* 1p0b_A* 1p0d_A 1p0e_A* 1pud_A 1q2r_A* 1q2s_A* 1q4w_A* 1q63_A* 1q65_A* 1q66_A* 1k4g_A* 1s38_A* ...
Probab=100.00 E-value=0 Score=854.86 Aligned_cols=371 Identities=55% Similarity=0.920 Sum_probs=362.4
Q ss_pred CCCCEEEEEEECCCCEEEEEEECCEEEECCCEEECCCCCCCCCCCHHHHHHCCCCEEEEEHHHHHHCCCHHHHHHCCCCH
Q ss_conf 88704999976499327999878875405857410686856886889998609989993226657387689986527420
Q gi|254780178|r 2 DKNFHFNLKAVSGSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNAYHLMLRPGAERIARLGGLH 81 (378)
Q Consensus 2 ~~~~~F~i~~~~~~aR~G~L~t~~g~i~TP~flpv~t~g~v~~lt~~~l~~~g~~~il~Ntyhl~~~pg~~~i~~~gGlh 81 (378)
+.+|+|+|.++|++||+|+|.++||+|+||+||||+++|+|||||||+|+++|++++++|+||++++||.+.+++.||+|
T Consensus 11 ~~~~~F~i~~~~~~AR~G~L~~~~g~i~TP~fmpv~t~g~v~~lt~d~l~~~~~~~~l~nty~l~~~pg~~~i~~~gglh 90 (386)
T 3bld_A 11 RPRFSFSIAAREGKARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRPGAERIAKLGGLH 90 (386)
T ss_dssp CCSCEEEEEEEETTEEEEEEEETTEEEEESEECCEESSSSBTTCCHHHHHHTTCSCEEECHHHHHHTTCHHHHHHTTCHH
T ss_pred CCCEEEEEEECCCCEEEEEEEECCEEEECCEEEECCCCCCCCCCCHHHHHHHCCCEEEHHHHHHHHCCCCHHHHHCCCHH
T ss_conf 88716999856376215999979976309907624788758858999999818999920467876378707888547757
Q ss_pred HHCCCCCCEEECCCCCCCCHHHHCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHH
Q ss_conf 11015772241145432101221022333310210144541587129999999873289779960121332211589999
Q gi|254780178|r 82 KFIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKR 161 (378)
Q Consensus 82 ~fl~~~~~ilTDSGgfQv~sl~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~ 161 (378)
+||+|++++||||||||++|+++....+++||+|+|+.+|+++.+|||++|++|+.|||||+|+||+|+++++++++.++
T Consensus 91 ~f~~~~~~iltdsg~~q~~~l~~~~~~~~~G~~f~s~~~g~~~~ltpe~~~~~q~~lg~DI~~~ldd~~~~~~~~~~~~~ 170 (386)
T 3bld_A 91 SFMGWDRPILTDSGGFQVMSLSSLTKQSEEGVTFKSHLDGSRHMLSPERSIEIQHLLGSDIVMAFDECTPYPATPSRAAS 170 (386)
T ss_dssp HHHTCCSCEEECCSHHHHHC------CBTTBCCCCC--------CCHHHHHHHHHHHTCSEEECCCCCCCSSCCHHHHHH
T ss_pred HHHCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEECHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHH
T ss_conf 76438875100356666555555655468805993455894567178999999997489888875515788850678999
Q ss_pred HHHHHHHHHHHHHHHHCCC----CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 9998899999998851358----886055402344436689999887642223467664135675167899899989850
Q gi|254780178|r 162 AMELSLRWAERSLVAFGNQ----PGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPI 237 (378)
Q Consensus 162 sv~rT~~w~~~~~~~~~~~----~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~ 237 (378)
+++||++|+++|++.+... ++|.+|||||||.++|||++|++++.+++|+||+|||++++++.+++.++++.+.+.
T Consensus 171 ~v~rt~~w~~~~~~~~~~~~~~~~~~~lfgivqGg~~~dlr~~s~~~l~~~~~~G~aIggl~~~~~~~~~~~iv~~~~~~ 250 (386)
T 3bld_A 171 SMERSMRWAKRSRDAFDSRKEQAENAALFGIQQGSVFENLRQQSADALAEIGFDGYAVGGLAGGEGQDEMFRVLDFSVPM 250 (386)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHCEEEEEECCTTCHHHHHHHHHHHHHHCCSEEEECSCSSSSCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 99999999999999876313117885276323554328999999999985799855114755576277899999762334
Q ss_pred CCHHHHEECCCCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHCCCCHHH
Q ss_conf 77033100254101899999985389836620000023320024562100210123223688559866981336889899
Q gi|254780178|r 238 LPVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDAESHCSALRDYSRAY 317 (378)
Q Consensus 238 LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t~~g~i~l~~~~~~~d~~pi~~~C~C~~C~~ytraY 317 (378)
||.+|||||||+|+|++|+.+|++|||||||++|+++||+|+|||++|.+||++++|++|++||+++|+||+|++|||||
T Consensus 251 lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p~~~Ar~G~a~t~~g~~~l~~~~~~~d~~Pl~~~C~C~~C~~~traY 330 (386)
T 3bld_A 251 LPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTRSGRNGQAFTWDGPINIRNARFSEDLKPLDSECHCAVCQKWSRAY 330 (386)
T ss_dssp SCTTSCEEETTCCCHHHHHHHHTTTCCEEC----------CEECCTTCCEETTSGGGTTCCSCSSSSCCSHHHHHCCHHH
T ss_pred CCCCCCEEECCCCCHHHHHHHHHCCCCCCCCCCHHHHHHCCCEECCCCCEEECCHHHCCCCCCCCCCCCCHHHCCCCHHH
T ss_conf 77888855258898799999998399845545344564078377048955725365435798869899991225159999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 9886857850899999999999999999999999985998999999999853279
Q gi|254780178|r 318 LHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQENWKKGD 372 (378)
Q Consensus 318 l~HL~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~~~~~~~~~ 372 (378)
||||++++|||||+||++|||++|.+||++||+||++|+|++|+++|.++|...+
T Consensus 331 l~HLl~a~Eml~~~LL~iHNl~~~~~~~~~iR~sI~~g~f~~~~~~f~~~y~~~~ 385 (386)
T 3bld_A 331 IHHLIRAGEILGAMLMTEHNIAFYQQLMQKIRDSISEGRFSQFAQDFRARYFARN 385 (386)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHC---
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC
T ss_conf 9777548846899999999999999999999999985999999999999960689
No 3
>1iq8_A Archaeosine tRNA-guanine transglycosylase; (alpha/beta)8 barrel, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} SCOP: b.122.1.1 c.1.20.1 d.17.6.1 PDB: 1it7_A* 1it8_A* 1j2b_A
Probab=100.00 E-value=0 Score=758.70 Aligned_cols=331 Identities=24% Similarity=0.355 Sum_probs=310.7
Q ss_pred CCCCEEEEEEECCCCEEEEEEECCEEEECCCEEECCCCCCCCCCCHHHHHHCCCCEEEEEHHHHHHCCCHHHHHHCCCCH
Q ss_conf 88704999976499327999878875405857410686856886889998609989993226657387689986527420
Q gi|254780178|r 2 DKNFHFNLKAVSGSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNAYHLMLRPGAERIARLGGLH 81 (378)
Q Consensus 2 ~~~~~F~i~~~~~~aR~G~L~t~~g~i~TP~flpv~t~g~v~~lt~~~l~~~g~~~il~Ntyhl~~~pg~~~i~~~gGlh 81 (378)
++||+|+|+++|++||+|+|.|+||+|+||+||||+|+|++ .++|++|+++|+|++|+||||||++||.+.+++.||||
T Consensus 5 ~~~~~Fei~~~d~~aR~G~l~t~hg~ieTP~fmPV~t~~~~-~~~~~~l~~~g~~~il~NtYhl~~~pg~~~~~~~gGlH 83 (582)
T 1iq8_A 5 DKMLKFEIKARDGAGRIGKLEVNGKKIETPAIMPVVNPKQM-VVEPKELEKMGFEIIITNSYIIYKDEELRRKALELGIH 83 (582)
T ss_dssp -CCEEEEEEEEETTEEEEEEEETTEEEEESEEEEBCCSSSC-SSCHHHHHHTTCCEEEEEHHHHHHCHHHHHHHHHHHHH
T ss_pred CCCEEEEEEECCCCCCEEEEEECCCEEECCCEEEEECCCEE-EECHHHHHHHCCCEEEEEHHHCCCCCCHHHHHHCCCHH
T ss_conf 75158999864186243899819923618956454548541-11799999819999972100146686465655408878
Q ss_pred HHCCCCCCEEECCCCCCCCHHHHCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHH
Q ss_conf 11015772241145432101221022333310210144541587129999999873289779960121332211589999
Q gi|254780178|r 82 KFIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKR 161 (378)
Q Consensus 82 ~fl~~~~~ilTDSGgfQv~sl~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~ 161 (378)
+||+|+|||||||||||++||+++ .+|||++|++|+.||+||+|+||+|++++.+++++++
T Consensus 84 ~fm~w~gpilTDSGgfQv~slg~~-------------------~~~~e~~i~~Q~~igsDI~m~lD~~t~~~~~~~~a~~ 144 (582)
T 1iq8_A 84 RMLDYNGIIEVDSGSFQLMKYGSI-------------------EVSNREIIEFQHRIGVDIGTFLDIPTPPDAPREQAVK 144 (582)
T ss_dssp HHHTCCSEEEEECSTTHHHHSSCC-------------------SSCHHHHHHHHHHTTCSBBCCCCCCCCTTCCHHHHHH
T ss_pred HHCCCCCCEECCCCHHHHEECCCC-------------------CCCCHHEEEEHHHCCCCEEEECCCCCCCCCCHHHHHH
T ss_conf 871999972616773675165545-------------------6785240665212575426765757899966999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH---HHHHHHHHHHCC
Q ss_conf 99988999999988513588860554023444366899998876422234676641356751678---998999898507
Q gi|254780178|r 162 AMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEV---MLHILSNVLPIL 238 (378)
Q Consensus 162 sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~---~~~ii~~~~~~L 238 (378)
+++||.+|++++... +.|.+|||||||.|+|||++|++++.+++|+||+|||+.++++.++ +.+++..+.+.|
T Consensus 145 ~~~~Tl~~~~~~~~~----~~~~~~giVQGG~~~dLR~~sa~~l~~~~~~gyaIGG~~~~~~~~~~~~~~~~i~~~~~~L 220 (582)
T 1iq8_A 145 ELEITLSRAREAEEI----KEIPMNATIQGSTYTDLRRYAARRLSSMNFEIHPIGGVVPLLESYRFRDVVDIVISSKMAL 220 (582)
T ss_dssp HHHHHHHHHHHHHHH----CCSCBBCCBCCTTCHHHHHHHHHHHHHSCCSBEEECSCHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHH----HHCCCCCEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 999988887776541----0045442242666467999999987417997776644456541578999999987511258
Q ss_pred CHHHHEECCCCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHCCCCHHHH
Q ss_conf 70331002541018999999853898366200000233200245621002101232236885598669813368898999
Q gi|254780178|r 239 PVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDAESHCSALRDYSRAYL 318 (378)
Q Consensus 239 P~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t~~g~i~l~~~~~~~d~~pi~~~C~C~~C~~ytraYl 318 (378)
|++|||||||+|+|++|+.+|++|||||||++|+++||+|+++|++|.++|++..|. +|+|++|++||||||
T Consensus 221 p~dkPryl~GvG~P~~i~~~v~~GvD~FD~~~~~~~Ar~g~~lt~~g~~~l~~~~~~--------pC~C~~C~~~trayL 292 (582)
T 1iq8_A 221 RPDRPVHLFGAGHPIVFALAVAMGVDLFDSASYALYAKDDRYMTPEGTKRLDELDYF--------PCSCPVCSKYTPQEL 292 (582)
T ss_dssp CTTSCEEETTCCCGGGHHHHHHTTCCEEEESHHHHHHHTTEEEETTEEEEGGGCSSC--------CCCSTTTTTCCHHHH
T ss_pred CCCCCEEEECCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCEEECCCCCEECCCCCCC--------CCCCHHHCCCCHHHH
T ss_conf 766742430778767789998418985035268888725904788884255345779--------999812130689999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 8868578508999999999999999999999999859989999999998
Q gi|254780178|r 319 HHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQEN 367 (378)
Q Consensus 319 ~HL~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~~~~ 367 (378)
|||++++|+ +||++|||++|.++|++||+||++|+|++|+++....
T Consensus 293 ~hL~~~~e~---~ll~~HNl~~~~~~~~~iR~aI~~g~l~e~ve~~~~~ 338 (582)
T 1iq8_A 293 REMPKEERT---RLLALHNLWVIKEEIKRVKQAIKEGELWRLVDERARS 338 (582)
T ss_dssp TTSCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHCCCC---CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 987545640---0899999999999999999999869999999999987
No 4
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transferase; HET: KCX; 1.90A {Propionibacterium freudenreichiisubsp} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*
Probab=94.27 E-value=0.3 Score=27.08 Aligned_cols=219 Identities=16% Similarity=0.176 Sum_probs=114.8
Q ss_pred HHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC-CCHHHHHHHHHHHHHH
Q ss_conf 999998732897799601213322115899999998899999998851358886055402344-4366899998876422
Q gi|254780178|r 130 ESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGG-DNINLRSFSAERLKEL 208 (378)
Q Consensus 130 ~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG-~~~dLR~~Sa~~l~~~ 208 (378)
..++.-..-+-|++-.+|..... ...+.++ ..+++ ... .-+..+...-++ ..+|.-...++.+.+.
T Consensus 121 ~~v~~s~~~g~~~~r~~~~~~~~----~~~~~~~----~~~~~----~g~-~~~~~~~~~~~~~~~~~~~~~~a~~l~~~ 187 (539)
T 1rqb_A 121 RFVDKSAENGMDVFRVFDAMNDP----RNMAHAM----AAVKK----AGK-HAQGTICYTISPVHTVEGYVKLAGQLLDM 187 (539)
T ss_dssp HHHHHHHHTTCCEEEECCTTCCT----HHHHHHH----HHHHH----TTC-EEEEEEECCCSTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCHHHCCCCHHHHH----HHHHHHH----HHHHH----CCC-EEEEEEEECCCCCCCHHHHHHHHHHHHHC
T ss_conf 99999998451666168679999----9889999----99997----699-56899995578877899999999998725
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCC----HHHHHHHHHHHCCCCEEEECCEEECCCCCCCCC--
Q ss_conf 23467664135675167899899989850770331002541----018999999853898366200000233200245--
Q gi|254780178|r 209 DLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGV----GTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFT-- 282 (378)
Q Consensus 209 ~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~----G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t-- 282 (378)
+.+.+.|.--.....-+...+++..+...+|.+.|.++++- --....+.|++.|+|.|||+..-.-.+-|..-+
T Consensus 188 Gad~I~l~Dt~G~~~P~~v~~lv~~lk~~~~~~~~i~~H~Hnt~Gla~An~laAieaGad~vD~ai~glGg~tgnp~~E~ 267 (539)
T 1rqb_A 188 GADSIALKDMAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLMKAIEAGVDVVDTAISSMSLGPGHNPTES 267 (539)
T ss_dssp TCSEEEEEETTCCCCHHHHHHHHHHHHHHHCTTCCEEEEEBCTTSCHHHHHHHHHHTTCSEEEEBCGGGCSTTSBCBHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHH
T ss_conf 98789955866665899999999999986586443256634887629999999998599999968656788888976999
Q ss_pred ------CCC---CHHHHH----HHHCCCCCCCCCCCCCHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ------621---002101----2322368855986698133688989998868578508999999999999999999999
Q gi|254780178|r 283 ------RFG---KINLRN----ARHIDDMRPLDAESHCSALRDYSRAYLHHLLRVNESLAGMILSWANLAYYQDLMKEIR 349 (378)
Q Consensus 283 ------~~g---~i~l~~----~~~~~d~~pi~~~C~C~~C~~ytraYl~HL~~~~E~l~~~Ll~iHNl~~~~~~~~~iR 349 (378)
..| -+|+.. +.|..+..+.-....... .--+.-|.| ++=|..+ ..+..+.+
T Consensus 268 vv~~L~~~g~~t~id~~~l~~i~~~~~~~r~~y~~~~~~~-~~~~~v~~~------~~PGG~~---------snl~~q~~ 331 (539)
T 1rqb_A 268 VAEMLEGTGYTTNLDYDRLHKIRDHFKAIRPKYKKFESKT-LVDTSIFKS------QIPGGML---------SNMESQLR 331 (539)
T ss_dssp HHHHTTTSSEECCCCHHHHHHHHHHHHHHGGGGGGGCCSC-SCCCTHHHH------CCCHHHH---------HHHHHHHH
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCEEEEC------CCCCCCC---------CCHHHHHH
T ss_conf 9999863898887689999999999999998743576544-566501333------8984503---------56688998
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 9998599899999999985327998665
Q gi|254780178|r 350 SAIAEDCFVDFAMQTQENWKKGDIPPIF 377 (378)
Q Consensus 350 ~aI~~g~f~~~~~~~~~~~~~~~~~~~~ 377 (378)
+.=..++|.+-.+++-+.++..-.|+.-
T Consensus 332 ~~g~~~~~~ev~~e~~~v~~~lG~~~~V 359 (539)
T 1rqb_A 332 AQGAEDKMDEVMAEVPRVRKAAGFPPLV 359 (539)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHTTCCCCC
T ss_pred HCCCHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 6784766999999999999976999730
No 5
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, biotin enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=92.88 E-value=0.51 Score=25.54 Aligned_cols=137 Identities=17% Similarity=0.148 Sum_probs=77.0
Q ss_pred HHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCC-CHHHHHHHHHHHHH
Q ss_conf 99999987328977996012133221158999999988999999988513588860554023444-36689999887642
Q gi|254780178|r 129 EESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGD-NINLRSFSAERLKE 207 (378)
Q Consensus 129 e~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~-~~dLR~~Sa~~l~~ 207 (378)
+..++....-+.|+.-.+|..-. .+..+.++ +.+.++ .. .-+.-+....+.. ..|.-..-++.+.+
T Consensus 103 ~~~~~~~~~~~i~~~r~~~~~~~----~~~~~~~i----~~~~~~----g~-~~~~~i~~~~~~~~~~~~~~~~~~~l~~ 169 (464)
T 2nx9_A 103 DTFVERAVKNGMDVFRVFDAMND----VRNMQQAL----QAVKKM----GA-HAQGTLCYTTSPVHNLQTWVDVAQQLAE 169 (464)
T ss_dssp HHHHHHHHHTTCCEEEECCTTCC----THHHHHHH----HHHHHT----TC-EEEEEEECCCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHH----HHHHHHHH----HHHHHH----CC-CCEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 54201887514089988668768----99999999----999973----67-5238998056888788999999998874
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCC----HHHHHHHHHHHCCCCEEEECCEEECCCCCCC
Q ss_conf 223467664135675167899899989850770331002541----0189999998538983662000002332002
Q gi|254780178|r 208 LDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGV----GTPDDILKSVSYGVDMFDCVMPTRAGRHGLA 280 (378)
Q Consensus 208 ~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~----G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~ 280 (378)
.+.+.+.|.--.....-+...+++..+....+ .|.++++- --....+.|+..|+|.||++..-.-.+-|..
T Consensus 170 ~Gad~I~l~DT~G~~~P~~v~~lv~~lk~~~~--~~i~~H~Hnt~Gla~AN~laAi~aGa~~iD~si~GlGg~~gnp 244 (464)
T 2nx9_A 170 LGVDSIALKDMAGILTPYAAEELVSTLKKQVD--VELHLHCHSTAGLADMTLLKAIEAGVDRVDTAISSMSGTYGHP 244 (464)
T ss_dssp TTCSEEEEEETTSCCCHHHHHHHHHHHHHHCC--SCEEEEECCTTSCHHHHHHHHHHTTCSEEEEBCGGGCSTTSCC
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCC
T ss_conf 69848983598775687899999999986278--7648886899862999999999849999995466789985886
No 6
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=92.74 E-value=0.17 Score=28.72 Aligned_cols=17 Identities=24% Similarity=0.063 Sum_probs=7.2
Q ss_pred HHHHHHHHHCCCCEEEE
Q ss_conf 99999987328977996
Q gi|254780178|r 129 EESVHIQNLLGSDIQMQ 145 (378)
Q Consensus 129 e~~i~~q~~lg~DI~~~ 145 (378)
++.++++..-|.|-+++
T Consensus 32 ~~~i~~l~~~Gv~gi~~ 48 (309)
T 3fkr_A 32 KRAVDFMIDAGSDGLCI 48 (309)
T ss_dssp HHHHHHHHHTTCSCEEE
T ss_pred HHHHHHHHHCCCCEEEE
T ss_conf 99999999759998997
No 7
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: MSE; 1.80A {Campylobacter jejuni} PDB: 3ler_A*
Probab=91.46 E-value=0.34 Score=26.72 Aligned_cols=22 Identities=18% Similarity=-0.012 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHCCCCEEEECCE
Q ss_conf 0189999998538983662000
Q gi|254780178|r 250 GTPDDILKSVSYGVDMFDCVMP 271 (378)
Q Consensus 250 G~P~~i~~~v~~GvDlFD~~~p 271 (378)
|.-..++....+|.+-+-|..+
T Consensus 193 ~~~~~~~~~~~~G~~G~~~~~~ 214 (301)
T 3m5v_A 193 GEDAINYPILSNGGKGVISVTS 214 (301)
T ss_dssp CCGGGHHHHHHTTCCEEEESGG
T ss_pred CCHHHHHHHHCCCCEEEEECHH
T ss_conf 8415454676289837875320
No 8
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=91.05 E-value=0.45 Score=25.87 Aligned_cols=18 Identities=11% Similarity=-0.134 Sum_probs=7.8
Q ss_pred HHHHHHHHHCCCCEEEEE
Q ss_conf 999999873289779960
Q gi|254780178|r 129 EESVHIQNLLGSDIQMQL 146 (378)
Q Consensus 129 e~~i~~q~~lg~DI~~~L 146 (378)
+..+++...-|.|-++.+
T Consensus 36 ~~~i~~l~~~Gv~Gl~~~ 53 (301)
T 1xky_A 36 TKLVNYLIDNGTTAIVVG 53 (301)
T ss_dssp HHHHHHHHHTTCCEEEES
T ss_pred HHHHHHHHHCCCCEEEEC
T ss_conf 999999997699989978
No 9
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase, lysine biosynthesis; 1.50A {Hahella chejuensis}
Probab=90.15 E-value=0.41 Score=26.13 Aligned_cols=15 Identities=13% Similarity=0.122 Sum_probs=6.2
Q ss_pred HHHHHHHCCCCEEEE
Q ss_conf 999987328977996
Q gi|254780178|r 131 SVHIQNLLGSDIQMQ 145 (378)
Q Consensus 131 ~i~~q~~lg~DI~~~ 145 (378)
..+.-+.+|.|.++.
T Consensus 87 ~a~~a~~~G~d~i~~ 101 (297)
T 2rfg_A 87 YAQHAQQAGADAVLC 101 (297)
T ss_dssp HHHHHHHHTCSEEEE
T ss_pred HHHHHHHHCCCEEEC
T ss_conf 999999809998970
No 10
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=89.29 E-value=0.67 Score=24.73 Aligned_cols=23 Identities=17% Similarity=0.109 Sum_probs=15.3
Q ss_pred CHHHHHHHHHHHCCCCEEEECCE
Q ss_conf 10189999998538983662000
Q gi|254780178|r 249 VGTPDDILKSVSYGVDMFDCVMP 271 (378)
Q Consensus 249 ~G~P~~i~~~v~~GvDlFD~~~p 271 (378)
.|....++....+|.|-+-|...
T Consensus 185 ~G~~~~~~~~~~~G~~G~~~~~~ 207 (294)
T 2ehh_A 185 SGDDSLTLPMMALGAKGVISVAN 207 (294)
T ss_dssp ESSGGGHHHHHHTTCCEEEESGG
T ss_pred ECCHHHHHHHHCCCCCEEECCHH
T ss_conf 67668766663059982222231
No 11
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=88.86 E-value=0.86 Score=24.00 Aligned_cols=23 Identities=17% Similarity=0.081 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHHCCCCEEEECCE
Q ss_conf 10189999998538983662000
Q gi|254780178|r 249 VGTPDDILKSVSYGVDMFDCVMP 271 (378)
Q Consensus 249 ~G~P~~i~~~v~~GvDlFD~~~p 271 (378)
.|.-..++.+..+|.+-+-|...
T Consensus 185 ~G~d~~~~~~l~~G~~G~i~~~~ 207 (292)
T 2vc6_A 185 TGEDGTALGYMAHGGHGCISVTA 207 (292)
T ss_dssp ESCGGGHHHHHHTTCCEEEESGG
T ss_pred CCCCHHHHHHHHCCCEEEEEHHH
T ss_conf 69719999999869849995377
No 12
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, cytoplasm; 2.00A {Neisseria meningitidis serogroup B}
Probab=87.55 E-value=1.3 Score=22.83 Aligned_cols=35 Identities=14% Similarity=0.100 Sum_probs=18.6
Q ss_pred HHCCCHHHHEECCCCHHHHHHHHHHHCCCCEEEECCEE
Q ss_conf 85077033100254101899999985389836620000
Q gi|254780178|r 235 LPILPVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPT 272 (378)
Q Consensus 235 ~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~pt 272 (378)
.+..|. ++.+-.|....++.....|.|-+-|....
T Consensus 180 ~~~~~~---~~~v~~g~~~~~~~~~~~Ga~G~~~~~~~ 214 (297)
T 3flu_A 180 INRAPE---GFVVLSGDDHTALPFMLCGGHGVITVAAN 214 (297)
T ss_dssp HHHSCT---TCEEEECCGGGHHHHHHTTCCEEEESGGG
T ss_pred HHHCCC---CEEEECCCHHHHHHHHHCCCCEEECCHHH
T ss_conf 997699---84783585043437886699753232233
No 13
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, cytoplasm, schiff base, carbohydrate metabolism; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 1hl2_A 1fdy_A 1fdz_A 1nal_1
Probab=87.55 E-value=0.96 Score=23.68 Aligned_cols=22 Identities=14% Similarity=-0.150 Sum_probs=13.4
Q ss_pred CCHHHHHHHHHHHCCCCEEEEC
Q ss_conf 4101899999985389836620
Q gi|254780178|r 248 GVGTPDDILKSVSYGVDMFDCV 269 (378)
Q Consensus 248 G~G~P~~i~~~v~~GvDlFD~~ 269 (378)
..|....++.+..+|.|-+-|.
T Consensus 194 ~~g~~~~~~~~~~~G~~G~~s~ 215 (303)
T 2wkj_A 194 YNGYDNIFASGLLAGADGGIGS 215 (303)
T ss_dssp EECCGGGHHHHHHHTCCEEEET
T ss_pred EECCHHHHHHHCCCCCCCCCCC
T ss_conf 8374788765314699863023
No 14
>1xxx_A DHDPS, dihydrodipicolinate synthase; DAPA, RV2753C, lysine biosynthesis, structural genomics, PSI protein structure initiative; 2.28A {Mycobacterium tuberculosis} SCOP: c.1.10.1
Probab=87.25 E-value=0.85 Score=24.02 Aligned_cols=14 Identities=7% Similarity=-0.080 Sum_probs=5.8
Q ss_pred HHHHHHCCCCEEEE
Q ss_conf 99987328977996
Q gi|254780178|r 132 VHIQNLLGSDIQMQ 145 (378)
Q Consensus 132 i~~q~~lg~DI~~~ 145 (378)
.+..+.+|.|.++.
T Consensus 102 a~~a~~~Gad~i~v 115 (303)
T 1xxx_A 102 AKACAAEGAHGLLV 115 (303)
T ss_dssp HHHHHHHTCSEEEE
T ss_pred HHHHHHHCCCEEEE
T ss_conf 99999716986999
No 15
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A
Probab=87.19 E-value=1.2 Score=23.00 Aligned_cols=18 Identities=17% Similarity=0.065 Sum_probs=10.2
Q ss_pred HHHHHHHHHCCCCEEEEE
Q ss_conf 999999873289779960
Q gi|254780178|r 129 EESVHIQNLLGSDIQMQL 146 (378)
Q Consensus 129 e~~i~~q~~lg~DI~~~L 146 (378)
.+.++.-+.+|.|.++..
T Consensus 116 ~~~a~~a~~~G~dav~v~ 133 (343)
T 2v9d_A 116 IELSQHAQQAGADGIVVI 133 (343)
T ss_dssp HHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHCCCCEEEEC
T ss_conf 999999985389858843
No 16
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefaciens STR. C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=87.19 E-value=1.2 Score=23.13 Aligned_cols=18 Identities=11% Similarity=-0.101 Sum_probs=8.7
Q ss_pred HHHHHHHHHCCCCEEEEE
Q ss_conf 999999873289779960
Q gi|254780178|r 129 EESVHIQNLLGSDIQMQL 146 (378)
Q Consensus 129 e~~i~~q~~lg~DI~~~L 146 (378)
+..++++-.-|.|-++.+
T Consensus 58 ~~~i~~li~~Gv~Gi~v~ 75 (332)
T 2r8w_A 58 SALIARLDAAEVDSVGIL 75 (332)
T ss_dssp HHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHCCCCEEEEC
T ss_conf 999999997799999978
No 17
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=86.92 E-value=1.2 Score=23.05 Aligned_cols=29 Identities=17% Similarity=0.149 Sum_probs=18.1
Q ss_pred EECCCCHHHHHHHHHHHCCCCEEEECCEE
Q ss_conf 00254101899999985389836620000
Q gi|254780178|r 244 HYLMGVGTPDDILKSVSYGVDMFDCVMPT 272 (378)
Q Consensus 244 r~l~G~G~P~~i~~~v~~GvDlFD~~~pt 272 (378)
......|....++....+|.+-+-|..+.
T Consensus 180 ~~~~~~G~~~~~~~~l~~G~~G~~~~~~n 208 (291)
T 3a5f_A 180 KLDIYSGNDDQIIPILALGGIGVISVLAN 208 (291)
T ss_dssp GSEEEESCGGGHHHHHHTTCCEEEESGGG
T ss_pred CCEEECCCHHHHHHHHHCCCCEEECCCCC
T ss_conf 81571682787634764699834204232
No 18
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa PAO1}
Probab=86.74 E-value=1.6 Score=22.18 Aligned_cols=143 Identities=12% Similarity=0.032 Sum_probs=73.9
Q ss_pred HHHHHHHHHCCCCEEEEEHHHCCCCCC---HHHHHHHHHHHHHHHHHHHHHHCCCCCC---EEEEECCCCCCHHHHHHHH
Q ss_conf 999999873289779960121332211---5899999998899999998851358886---0554023444366899998
Q gi|254780178|r 129 EESVHIQNLLGSDIQMQLDECLALPAE---DKELKRAMELSLRWAERSLVAFGNQPGK---ALFGIVQGGDNINLRSFSA 202 (378)
Q Consensus 129 e~~i~~q~~lg~DI~~~LD~~~~~~~~---~k~~~~sv~rT~~w~~~~~~~~~~~~~~---~lfgiVqGG~~~dLR~~Sa 202 (378)
...++.....+.+.+..+..+.+...- .......+++...+.+.+.+........ ....+..+-..++-..+.+
T Consensus 86 ~~~~~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (302)
T 2ftp_A 86 LKGFEAALESGVKEVAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVRGYISCVLGCPYDGDVDPRQVAWVA 165 (302)
T ss_dssp HHHHHHHHHTTCCEEEEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHHHH
T ss_pred CHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCEEHHHHHHHH
T ss_conf 14799998369988999730549999887630088899878899999986200110333102577755531089999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCC----HHHHHHHHHHHCCCCEEEECCEE
Q ss_conf 87642223467664135675167899899989850770331002541----01899999985389836620000
Q gi|254780178|r 203 ERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGV----GTPDDILKSVSYGVDMFDCVMPT 272 (378)
Q Consensus 203 ~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~----G~P~~i~~~v~~GvDlFD~~~pt 272 (378)
+++.+.+.+.+.|.--.....-+.+.+++..+...+|. .|..+++- --+...+.|+..|+|.+||+..-
T Consensus 166 ~~~~~~g~d~i~l~Dt~G~~~P~~v~~li~~l~~~~~~-~~ig~H~Hnn~GlA~an~l~Ai~aG~~~iD~si~G 238 (302)
T 2ftp_A 166 RELQQMGCYEVSLGDTIGVGTAGATRRLIEAVASEVPR-ERLAGHFHDTYGQALANIYASLLEGIAVFDSSVAG 238 (302)
T ss_dssp HHHHHTTCSEEEEEESSSCCCHHHHHHHHHHHTTTSCG-GGEEEEEBCTTSCHHHHHHHHHHTTCCEEEEBGGG
T ss_pred HHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCC-CEEEEEECCCCCHHHHHHHHHHHHCCCEEECCCCC
T ss_conf 99996597364257744668899999999999973899-74788716980459999999999688962054667
No 19
>3noe_A DAP-A, dihydrodipicolinate synthase; Lys biosynthesis pathway, lyase; 2.95A {Pseudomonas aeruginosa}
Probab=86.60 E-value=1.6 Score=22.24 Aligned_cols=33 Identities=18% Similarity=0.122 Sum_probs=20.9
Q ss_pred EECCCCHHHHHHHHHHHCCCCEEEECCEEECCC
Q ss_conf 002541018999999853898366200000233
Q gi|254780178|r 244 HYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGR 276 (378)
Q Consensus 244 r~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar 276 (378)
++....|....++....+|.|-+-|..+....+
T Consensus 180 ~~~v~~g~~~~~~~~~~~Ga~G~~~~~~~~~p~ 212 (292)
T 3noe_A 180 DFLVYSGDDATAVELMLLGGKGNISVTANVAPR 212 (292)
T ss_dssp TSEEEECCTTTHHHHHHTTCCEEEESGGGTCHH
T ss_pred CCEEEECCHHHHCHHHHCCCCCCCCCHHHHCCH
T ss_conf 959985741311248765997633220431628
No 20
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=84.68 E-value=2 Score=21.53 Aligned_cols=90 Identities=14% Similarity=0.097 Sum_probs=64.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCC----HHHHHHHHHHHCCCCE
Q ss_conf 344436689999887642223467664135675167899899989850770331002541----0189999998538983
Q gi|254780178|r 190 QGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGV----GTPDDILKSVSYGVDM 265 (378)
Q Consensus 190 qGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~----G~P~~i~~~v~~GvDl 265 (378)
.+-..+|--.+-++.+.+.+.+.+.|.-.+....-+...++|..+...+| +.|.++++- --....+.|++.|+|.
T Consensus 255 ~~~~~~d~~~~~a~~~~~~Gad~I~ikDt~G~l~P~~v~~lV~alr~~~p-~ipI~~H~Hnd~GlAvAn~laAveAGad~ 333 (718)
T 3bg3_A 255 RTKYSLQYYMGLAEELVRAGTHILCIKDMAGLLKPTACTMLVSSLRDRFP-DLPLHIHTHDTSGAGVAAMLACAQAGADV 333 (718)
T ss_dssp CCTTCHHHHHHHHHHHHHHTCSEEEEECTTSCCCHHHHHHHHHHHHHHST-TCCEEEECCCTTSCHHHHHHHHHHTTCSE
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCCCCHHHHHHHHHHHHCCCE
T ss_conf 77567999999999999749988994477646689999999999997288-70799950797363999999999839998
Q ss_pred EEECCEEECCCCCCC
Q ss_conf 662000002332002
Q gi|254780178|r 266 FDCVMPTRAGRHGLA 280 (378)
Q Consensus 266 FD~~~ptr~Ar~G~~ 280 (378)
+||+.--.-.|-|.+
T Consensus 334 VD~ti~glGertGnp 348 (718)
T 3bg3_A 334 VDVAADSMSGMTSQP 348 (718)
T ss_dssp EEEBCGGGCSTTSCC
T ss_pred EEECCCCCCCCCCCC
T ss_conf 842135666866887
No 21
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}
Probab=84.50 E-value=2 Score=21.48 Aligned_cols=100 Identities=6% Similarity=-0.052 Sum_probs=61.4
Q ss_pred CEEEEECCCC-CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCH--HHHEECCCC----HHHHHH
Q ss_conf 6055402344-436689999887642223467664135675167899899989850770--331002541----018999
Q gi|254780178|r 183 KALFGIVQGG-DNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPV--ERPHYLMGV----GTPDDI 255 (378)
Q Consensus 183 ~~lfgiVqGG-~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~--~kPr~l~G~----G~P~~i 255 (378)
...+.....+ ...+.-...++.+.+.+.+.+.|.--.....-+...+++..+...++. +.|..+++- --....
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~i~l~DT~G~~~P~~v~~~i~~~~~~l~~~~~i~l~~H~Hn~~GlA~aN~ 215 (293)
T 3ewb_X 136 VVQFSPEDATRSDRAFLIEAVQTAIDAGATVINIPDTVGYTNPTEFGQLFQDLRREIKQFDDIIFASHCHDDLGMATANA 215 (293)
T ss_dssp CEEEEEETGGGSCHHHHHHHHHHHHHTTCCEEEEECSSSCCCHHHHHHHHHHHHHHCTTGGGSEEEEECBCTTSCHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHH
T ss_conf 79981133667634568999999998699799833522335837899999999997232027057761688443699999
Q ss_pred HHHHHCCCCEEEECCEEECCCCCCCCC
Q ss_conf 999853898366200000233200245
Q gi|254780178|r 256 LKSVSYGVDMFDCVMPTRAGRHGLAFT 282 (378)
Q Consensus 256 ~~~v~~GvDlFD~~~ptr~Ar~G~~~t 282 (378)
+.|+..|||.||++..=.-.+.|.+=|
T Consensus 216 laA~~~Gv~~iD~si~GlG~~aGN~~t 242 (293)
T 3ewb_X 216 LAAIENGARRVEGTINGIGERAGNTAL 242 (293)
T ss_dssp HHHHHTTCCEEEEBGGGCCTTTCBCBH
T ss_pred HHHHHHCCCEEEEECCCCCCCCCCCCH
T ss_conf 999983988895512444654468309
No 22
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino- acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; 1.45A {Staphylococcus aureus} PDB: 3di1_A 3di0_A
Probab=83.71 E-value=1.3 Score=22.69 Aligned_cols=29 Identities=14% Similarity=0.217 Sum_probs=17.0
Q ss_pred HEECCCCHHHHHHHHHHHCCCCEEEECCE
Q ss_conf 10025410189999998538983662000
Q gi|254780178|r 243 PHYLMGVGTPDDILKSVSYGVDMFDCVMP 271 (378)
Q Consensus 243 Pr~l~G~G~P~~i~~~v~~GvDlFD~~~p 271 (378)
+...+..|.-..++....+|.|-|-+...
T Consensus 181 ~~~~v~~g~d~~~~~~l~~G~~G~is~~~ 209 (292)
T 3daq_A 181 NSFALYSGNDDNVVEYYQRGGQGVISVIA 209 (292)
T ss_dssp TTSEEEESCGGGHHHHHHTTCCEEEESGG
T ss_pred CEEEEECCCHHHHHHHHHCCCCEEECCCC
T ss_conf 70699417567768998379976761413
No 23
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=82.63 E-value=2.1 Score=21.44 Aligned_cols=18 Identities=17% Similarity=0.209 Sum_probs=10.4
Q ss_pred HHHHHHHHHCCCCEEEEE
Q ss_conf 999999873289779960
Q gi|254780178|r 129 EESVHIQNLLGSDIQMQL 146 (378)
Q Consensus 129 e~~i~~q~~lg~DI~~~L 146 (378)
.+.++.-+.+|.|.++..
T Consensus 85 i~~a~~a~~~Gad~v~v~ 102 (289)
T 2yxg_A 85 IELSVFAEDVGADAVLSI 102 (289)
T ss_dssp HHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHCCCCEEEEC
T ss_conf 999999997799999988
No 24
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, , PSI-2, protein structure initiative; 1.80A {Bacillus clausii ksm-k16}
Probab=81.16 E-value=2.7 Score=20.63 Aligned_cols=18 Identities=22% Similarity=0.135 Sum_probs=9.0
Q ss_pred HHHHHHHHHCCCCEEEEE
Q ss_conf 999999873289779960
Q gi|254780178|r 129 EESVHIQNLLGSDIQMQL 146 (378)
Q Consensus 129 e~~i~~q~~lg~DI~~~L 146 (378)
+..++++..-|.|-++++
T Consensus 36 ~~~i~~l~~~Gv~Gi~~~ 53 (316)
T 3e96_A 36 KETVDRIVDNGIDVIVPC 53 (316)
T ss_dssp HHHHHHHHTTTCCEECTT
T ss_pred HHHHHHHHHCCCCEEEEC
T ss_conf 999999997599989968
No 25
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, JCSG, PSI, protein structure initiative; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1
Probab=81.15 E-value=2.2 Score=21.23 Aligned_cols=29 Identities=17% Similarity=0.224 Sum_probs=16.3
Q ss_pred HEECCCCHHHHHHHHHHHCCCCEEEECCE
Q ss_conf 10025410189999998538983662000
Q gi|254780178|r 243 PHYLMGVGTPDDILKSVSYGVDMFDCVMP 271 (378)
Q Consensus 243 Pr~l~G~G~P~~i~~~v~~GvDlFD~~~p 271 (378)
+......|....++....+|.|-+-+..+
T Consensus 194 ~~~~v~~g~~~~~~~~~~~G~~G~i~~~~ 222 (306)
T 1o5k_A 194 SDFMVWSGNDDRTFYLLCAGGDGVISVVS 222 (306)
T ss_dssp TTCEEEESSGGGHHHHHHHTCCEEEESGG
T ss_pred CCEEEECCCHHHHHHHHHCCCCEEECCCC
T ss_conf 86367347517888887549970565302
No 26
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris}
Probab=80.87 E-value=2.8 Score=20.57 Aligned_cols=17 Identities=6% Similarity=0.016 Sum_probs=7.7
Q ss_pred HHHHHHHHHCCCCEEEE
Q ss_conf 99999987328977996
Q gi|254780178|r 129 EESVHIQNLLGSDIQMQ 145 (378)
Q Consensus 129 e~~i~~q~~lg~DI~~~ 145 (378)
+..++++..-|.|-++.
T Consensus 32 ~~~i~~li~~Gv~Gi~v 48 (313)
T 3dz1_A 32 DRLTDFYAEVGCEGVTV 48 (313)
T ss_dssp HHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHCCCCEEEE
T ss_conf 99999999759998997
No 27
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=80.43 E-value=2.9 Score=20.47 Aligned_cols=18 Identities=17% Similarity=0.093 Sum_probs=11.3
Q ss_pred HHHHHHHHHCCCCEEEEE
Q ss_conf 999999873289779960
Q gi|254780178|r 129 EESVHIQNLLGSDIQMQL 146 (378)
Q Consensus 129 e~~i~~q~~lg~DI~~~L 146 (378)
.+..+.-+.+|.|.++.+
T Consensus 101 i~~a~~a~~~Gad~i~v~ 118 (304)
T 3cpr_A 101 VELAEAAASAGADGLLVV 118 (304)
T ss_dssp HHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHCCCCEEEEC
T ss_conf 999999997399999988
No 28
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=79.75 E-value=3 Score=20.33 Aligned_cols=147 Identities=12% Similarity=0.063 Sum_probs=74.7
Q ss_pred CHHHHHHHHHHCCCCEEEEEHHHCCCC------CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC--CCC--CHH
Q ss_conf 299999998732897799601213322------1158999999988999999988513588860554023--444--366
Q gi|254780178|r 127 SPEESVHIQNLLGSDIQMQLDECLALP------AEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQ--GGD--NIN 196 (378)
Q Consensus 127 tpe~~i~~q~~lg~DI~~~LD~~~~~~------~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVq--GG~--~~d 196 (378)
.....++.....+.+.+..+....+.. .+.++.-+.+.+..+.+. .......+...+ .+. ..+
T Consensus 97 ~~~~~i~~~~~~g~~~i~~~~~~s~~~~~~~~~~~~~~~l~~~~~~~~~a~-------~~g~~v~~~~~~~~~~~~~~~~ 169 (337)
T 3ble_A 97 DGNKTVDWIKDSGAKVLNLLTKGSLHHLEKQLGKTPKEFFTDVSFVIEYAI-------KSGLKINVYLEDWSNGFRNSPD 169 (337)
T ss_dssp STTHHHHHHHHHTCCEEEEEEECSHHHHHHHTCCCHHHHHHHHHHHHHHHH-------HTTCEEEEEEETHHHHHHHCHH
T ss_pred CCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH-------HCCCEEEEECCCCCCCCCCCHH
T ss_conf 133789999856998786425667999999974999999999999999998-------6397576520235666667789
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECC-----CCHHHHHHHHHHHCCCCEEEECCE
Q ss_conf 899998876422234676641356751678998999898507703310025-----410189999998538983662000
Q gi|254780178|r 197 LRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLM-----GVGTPDDILKSVSYGVDMFDCVMP 271 (378)
Q Consensus 197 LR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~-----G~G~P~~i~~~v~~GvDlFD~~~p 271 (378)
--.+.++.+.+.+.+.+.|.--.-...-++..+++......+| +.|..++ |.+ ....+.|++.|+|.+|++.-
T Consensus 170 ~~~~~~~~~~~~Gad~I~l~DT~G~~~P~~v~~lv~~l~~~~~-~~~i~~H~Hnd~GlA-~AN~laAi~aGa~~id~tl~ 247 (337)
T 3ble_A 170 YVKSLVEHLSKEHIERIFLPDTLGVLSPEETFQGVDSLIQKYP-DIHFEFHGHNDYDLS-VANSLQAIRAGVKGLHASIN 247 (337)
T ss_dssp HHHHHHHHHHTSCCSEEEEECTTCCCCHHHHHHHHHHHHHHCT-TSCEEEECBCTTSCH-HHHHHHHHHTTCSEEEEBGG
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCCCCCH-HHHHHHHHHHCCCEEEEECC
T ss_conf 9988999998751135203651134786899999999998589-974898527996729-99999999819819995023
Q ss_pred EECCCCCCCCC
Q ss_conf 00233200245
Q gi|254780178|r 272 TRAGRHGLAFT 282 (378)
Q Consensus 272 tr~Ar~G~~~t 282 (378)
-.--|-|.+-+
T Consensus 248 G~G~~aGN~~~ 258 (337)
T 3ble_A 248 GLGERAGNTPL 258 (337)
T ss_dssp GCSSTTCBCBH
T ss_pred CCCCCCCCCCH
T ss_conf 44787668769
No 29
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=78.59 E-value=3.3 Score=20.10 Aligned_cols=13 Identities=15% Similarity=0.026 Sum_probs=5.8
Q ss_pred HHHHHCCCCEEEE
Q ss_conf 9987328977996
Q gi|254780178|r 133 HIQNLLGSDIQMQ 145 (378)
Q Consensus 133 ~~q~~lg~DI~~~ 145 (378)
+..+.+|.|.++.
T Consensus 112 ~~a~~~Gad~vlv 124 (344)
T 2hmc_A 112 VHAQKVGAKGLMV 124 (344)
T ss_dssp HHHHHHTCSEEEE
T ss_pred HHHHHCCCCEEEC
T ss_conf 9999839974541
No 30
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=78.32 E-value=3.3 Score=20.04 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=15.8
Q ss_pred ECCCCHHHHHHHHHHHCCCCEEEECCE
Q ss_conf 025410189999998538983662000
Q gi|254780178|r 245 YLMGVGTPDDILKSVSYGVDMFDCVMP 271 (378)
Q Consensus 245 ~l~G~G~P~~i~~~v~~GvDlFD~~~p 271 (378)
...-.|.-..++....+|.|-+-+...
T Consensus 187 ~~v~~G~d~~~~~~~~~G~~G~i~~~~ 213 (311)
T 3h5d_A 187 FLIYTGEDGDAFHAMNLGADGVISVAS 213 (311)
T ss_dssp CEEEECCGGGHHHHHHHTCCEEEESTH
T ss_pred EEEEECCHHHHHHHHHCCCEEEEECCC
T ss_conf 268407357676888549537886302
No 31
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=78.31 E-value=3.3 Score=20.04 Aligned_cols=38 Identities=11% Similarity=-0.059 Sum_probs=18.5
Q ss_pred HHHCCCHHHHEECCCCHHHHHHHHHHHCCCCEEEECCE
Q ss_conf 98507703310025410189999998538983662000
Q gi|254780178|r 234 VLPILPVERPHYLMGVGTPDDILKSVSYGVDMFDCVMP 271 (378)
Q Consensus 234 ~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~p 271 (378)
....+|.....-++..+.-..+.....+|.|-+-|...
T Consensus 179 ~~~~~~~~~~~~v~~G~~~~~l~~~~~~G~~G~i~~~~ 216 (314)
T 3d0c_A 179 VMRAVPKSSNVAFICGTAEKWAPFFYHAGAVGFTSGLV 216 (314)
T ss_dssp HHHHSCGGGCCEEEETTHHHHHHHHHHHTCCEEEESGG
T ss_pred HHHHCCCCCEEEEECCCHHHHHHHHHHCCCEEEECCCH
T ss_conf 99966356716886185789999998369838953505
No 32
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthesis, lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=78.31 E-value=3.3 Score=20.04 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=14.2
Q ss_pred CHHHHHHHHHHHCCCCEEEECCE
Q ss_conf 10189999998538983662000
Q gi|254780178|r 249 VGTPDDILKSVSYGVDMFDCVMP 271 (378)
Q Consensus 249 ~G~P~~i~~~v~~GvDlFD~~~p 271 (378)
.|....++....+|.|-+-|...
T Consensus 185 ~G~~~~~~~~~~~Ga~G~~~~~~ 207 (292)
T 2ojp_A 185 SGDDASALDFMQYGGHGVISVTA 207 (292)
T ss_dssp ESCGGGHHHHHHTTCCEEEESGG
T ss_pred ECCHHHHHHHHHCCCEEEEECCC
T ss_conf 53578654787579659983333
No 33
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris}
Probab=76.38 E-value=3.8 Score=19.69 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=9.7
Q ss_pred HHHHHHHCCCCEEEEE
Q ss_conf 9999873289779960
Q gi|254780178|r 131 SVHIQNLLGSDIQMQL 146 (378)
Q Consensus 131 ~i~~q~~lg~DI~~~L 146 (378)
..+.-+.+|.|.++..
T Consensus 91 ~a~~a~~~Gad~i~v~ 106 (300)
T 3eb2_A 91 QAKLYEKLGADGILAI 106 (300)
T ss_dssp HHHHHHHHTCSEEEEE
T ss_pred HHHHHHHCCCCEEEEC
T ss_conf 9977764498179852
No 34
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A*
Probab=73.88 E-value=4.3 Score=19.27 Aligned_cols=18 Identities=0% Similarity=-0.245 Sum_probs=13.2
Q ss_pred HHHHHHHHHCCCCEEEEE
Q ss_conf 999999873289779960
Q gi|254780178|r 129 EESVHIQNLLGSDIQMQL 146 (378)
Q Consensus 129 e~~i~~q~~lg~DI~~~L 146 (378)
.+.++..+.+|.|-++.+
T Consensus 81 i~~a~~a~~~Gad~~~~~ 98 (293)
T 1w3i_A 81 IRLAKLSKDFDIVGIASY 98 (293)
T ss_dssp HHHHHHGGGSCCSEEEEE
T ss_pred HHHHHHHHHCCCCEEECC
T ss_conf 888777774496555046
No 35
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MCSG, protein structure initiative; 1.20A {Agrobacterium tumefaciens str}
Probab=73.10 E-value=4.5 Score=19.15 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHCCCCEEEECCE
Q ss_conf 10189999998538983662000
Q gi|254780178|r 249 VGTPDDILKSVSYGVDMFDCVMP 271 (378)
Q Consensus 249 ~G~P~~i~~~v~~GvDlFD~~~p 271 (378)
.|....++....+|.|-+-|...
T Consensus 192 ~G~d~~~~~~~~~G~~G~is~~~ 214 (294)
T 3b4u_A 192 IGDERDLARGVRLGGQGAISGVA 214 (294)
T ss_dssp ECCHHHHHHHHHTTCCEEEESGG
T ss_pred CCCHHHHHHHHHCCCCEEECCHH
T ss_conf 68336540776248972410388
No 36
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho gluconate aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=72.82 E-value=4.6 Score=19.11 Aligned_cols=19 Identities=16% Similarity=-0.139 Sum_probs=12.8
Q ss_pred HHHHHHHHHHCCCCEEEEE
Q ss_conf 9999999873289779960
Q gi|254780178|r 128 PEESVHIQNLLGSDIQMQL 146 (378)
Q Consensus 128 pe~~i~~q~~lg~DI~~~L 146 (378)
..+.++..+.+|.|-++.+
T Consensus 80 ~~~~~~~a~~~G~d~~~~~ 98 (288)
T 2nuw_A 80 VMELVKFSNEMDILGVSSH 98 (288)
T ss_dssp HHHHHHHHHTSCCSEEEEC
T ss_pred HHHHHHHHHHHHHCCCCCC
T ss_conf 9999998877540213104
No 37
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}
Probab=72.19 E-value=4.7 Score=19.01 Aligned_cols=98 Identities=11% Similarity=0.022 Sum_probs=61.8
Q ss_pred EEEEEC-CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCH--HHHEECC-----CCHHHHHH
Q ss_conf 055402-344436689999887642223467664135675167899899989850770--3310025-----41018999
Q gi|254780178|r 184 ALFGIV-QGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPV--ERPHYLM-----GVGTPDDI 255 (378)
Q Consensus 184 ~lfgiV-qGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~--~kPr~l~-----G~G~P~~i 255 (378)
.-|+.. .|-...|.-.+.++.+.+.+.+.+.|.--.....-++..+++..+...+|. +.|..+. |. -....
T Consensus 138 v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~I~l~DT~G~~~P~~v~~l~~~~~~~~~~~~~~~l~~H~Hn~~Gl-a~aN~ 216 (325)
T 3eeg_A 138 VEFFCEDAGRADQAFLARMVEAVIEAGADVVNIPDTTGYMLPWQYGERIKYLMDNVSNIDKAILSAHCHNDLGL-ATANS 216 (325)
T ss_dssp EEEEEETGGGSCHHHHHHHHHHHHHHTCSEEECCBSSSCCCHHHHHHHHHHHHHHCSCGGGSEEEECBCCTTSC-HHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCH-HHHHH
T ss_conf 67730455420799999999999985999999546656617506789999998751699873378885487461-99999
Q ss_pred HHHHHCCCCEEEECCEEECCCCCCCCC
Q ss_conf 999853898366200000233200245
Q gi|254780178|r 256 LKSVSYGVDMFDCVMPTRAGRHGLAFT 282 (378)
Q Consensus 256 ~~~v~~GvDlFD~~~ptr~Ar~G~~~t 282 (378)
+.|+..|+|.||++..=.-.+-|.+=|
T Consensus 217 l~A~~aG~~~iD~si~GlG~~aGN~~t 243 (325)
T 3eeg_A 217 LAALQNGARQVECTINGIGERAGNTAL 243 (325)
T ss_dssp HHHHHHTCCEEEEBGGGCCSTTCCCBH
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 999983978105564444777787018
No 38
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=71.75 E-value=4.9 Score=18.95 Aligned_cols=18 Identities=22% Similarity=0.088 Sum_probs=10.9
Q ss_pred HHHHHHHHHCCCCEEEEE
Q ss_conf 999999873289779960
Q gi|254780178|r 129 EESVHIQNLLGSDIQMQL 146 (378)
Q Consensus 129 e~~i~~q~~lg~DI~~~L 146 (378)
.+..+..+.+|.|.++.+
T Consensus 89 i~la~~a~~~Gad~v~~~ 106 (293)
T 1f6k_A 89 VELGKYATELGYDCLSAV 106 (293)
T ss_dssp HHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHCCCCEEEEC
T ss_conf 999999997599977725
No 39
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein structure initiative; 2.30A {Brucella melitensis 16M}
Probab=69.18 E-value=5.5 Score=18.58 Aligned_cols=139 Identities=15% Similarity=0.040 Sum_probs=74.3
Q ss_pred EECHHHHHHHHHHCCCCEEEEEHHHCCC------CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE------EE-ECCC
Q ss_conf 7129999999873289779960121332------211589999999889999999885135888605------54-0234
Q gi|254780178|r 125 RVSPEESVHIQNLLGSDIQMQLDECLAL------PAEDKELKRAMELSLRWAERSLVAFGNQPGKAL------FG-IVQG 191 (378)
Q Consensus 125 ~ltpe~~i~~q~~lg~DI~~~LD~~~~~------~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~l------fg-iVqG 191 (378)
...+...++.....+.++...+-..... ..+.++..........++. ......- +. ...+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 150 (295)
T 1ydn_A 78 LVPNMKGYEAAAAAHADEIAVFISASEGFSKANINCTIAESIERLSPVIGAAI-------NDGLAIRGYVSCVVECPYDG 150 (295)
T ss_dssp ECSSHHHHHHHHHTTCSEEEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHH-------HTTCEEEEEEECSSEETTTE
T ss_pred HCCCCCHHHHHCCCCCCEEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHH-------HCCCEEEEEEEEEECCCCCC
T ss_conf 31343102321025887899987426799999971557877777666666553-------03524776655552255331
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCC----HHHHHHHHHHHCCCCEEE
Q ss_conf 4436689999887642223467664135675167899899989850770331002541----018999999853898366
Q gi|254780178|r 192 GDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGV----GTPDDILKSVSYGVDMFD 267 (378)
Q Consensus 192 G~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~----G~P~~i~~~v~~GvDlFD 267 (378)
....+.-..-++.+.+.+.+.+.+..-.....-+...+++......+|. .|..+.+- --....+.++..|+|.+|
T Consensus 151 ~~~~~~~~~~~~~~~~~g~~~I~l~Dt~G~~~P~~v~~~i~~~~~~~~~-~~l~~H~Hnn~GlA~aN~l~A~~aGa~~iD 229 (295)
T 1ydn_A 151 PVTPQAVASVTEQLFSLGCHEVSLGDTIGRGTPDTVAAMLDAVLAIAPA-HSLAGHYHDTGGRALDNIRVSLEKGLRVFD 229 (295)
T ss_dssp ECCHHHHHHHHHHHHHHTCSEEEEEETTSCCCHHHHHHHHHHHHTTSCG-GGEEEEEBCTTSCHHHHHHHHHHHTCCEEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCC-CCEEEEECCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 0335566655554422696499713535565878878899887505776-422577669803899999999980999999
Q ss_pred ECCE
Q ss_conf 2000
Q gi|254780178|r 268 CVMP 271 (378)
Q Consensus 268 ~~~p 271 (378)
|+..
T Consensus 230 ~ti~ 233 (295)
T 1ydn_A 230 ASVG 233 (295)
T ss_dssp EBTT
T ss_pred ECCC
T ss_conf 6255
No 40
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol- phosphate, lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=68.15 E-value=5.8 Score=18.44 Aligned_cols=109 Identities=14% Similarity=0.100 Sum_probs=57.5
Q ss_pred HHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 73289779960121332211589999999889999999885135888605540234443668999988764222346766
Q gi|254780178|r 136 NLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKELDLKGYAI 215 (378)
Q Consensus 136 ~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aI 215 (378)
..-|.|=++..|.+.. . ...|...|.+. .- ..-.+..+ ...+-|.+.+.+.+. +| -|.+
T Consensus 115 ~~~GvdGviipDlp~e--e-----------~~~~~~~~~~~-~l-~~I~lvaP----tt~~~ri~~i~~~a~-gf-IY~v 173 (262)
T 1rd5_A 115 KEAGVHGLIVPDLPYV--A-----------AHSLWSEAKNN-NL-ELVLLTTP----AIPEDRMKEITKASE-GF-VYLV 173 (262)
T ss_dssp HHTTCCEEECTTCBTT--T-----------HHHHHHHHHHT-TC-EECEEECT----TSCHHHHHHHHHHCC-SC-EEEE
T ss_pred HHCCCEEEECCCCHHH--H-----------HHHHHHHHHHH-CC-CEEEECCC----CCCHHHHHHHHCCCC-CE-EEEE
T ss_conf 6258204422576056--6-----------77888887510-43-40010167----771878887632698-62-7863
Q ss_pred HCCCC-C---CCHHHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEEE
Q ss_conf 41356-7---5167899899989850770331002-541018999999853898366
Q gi|254780178|r 216 GGLAV-G---EPQEVMLHILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMFD 267 (378)
Q Consensus 216 gGl~~-g---e~~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlFD 267 (378)
+-.++ | .......+.+..+... .++|..+ ||+.+|+++-.....|.|-.-
T Consensus 174 s~~GvTG~~~~~~~~~~~~i~~ir~~--t~~Pi~vGFGI~~~e~v~~~~~~gADGvV 228 (262)
T 1rd5_A 174 SVNGVTGPRANVNPRVESLIQEVKKV--TNKPVAVGFGISKPEHVKQIAQWGADGVI 228 (262)
T ss_dssp CSSCCBCTTSCBCTHHHHHHHHHHHH--CSSCEEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHC--CCCCEEEEECCCCHHHHHHHHHCCCCEEE
T ss_conf 03464221221210278899987513--68877999278999999999854999999
No 41
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 2.71A {Bacillus subtilis subsp}
Probab=66.84 E-value=6.1 Score=18.27 Aligned_cols=77 Identities=17% Similarity=0.241 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECC-----CCHHHHHHHHHHHCCCCEEE
Q ss_conf 4366899998876422234676641356751678998999898507703310025-----41018999999853898366
Q gi|254780178|r 193 DNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLM-----GVGTPDDILKSVSYGVDMFD 267 (378)
Q Consensus 193 ~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~-----G~G~P~~i~~~v~~GvDlFD 267 (378)
...+.-..-++.+.+.+.+.+.|..-.....-++..+++.......|. .|..+. |. -...-+.|+..|+|.+|
T Consensus 154 ~~~~~~~~~~~~~~~~g~d~i~l~Dt~G~~~P~~v~~~v~~~~~~~~~-~~i~~H~Hn~~Gl-a~an~laAi~aG~~~id 231 (307)
T 1ydo_A 154 VPIEQVIRLSEALFEFGISELSLGDTIGAANPAQVETVLEALLARFPA-NQIALHFHDTRGT-ALANMVTALQMGITVFD 231 (307)
T ss_dssp CCHHHHHHHHHHHHHHTCSCEEEECSSCCCCHHHHHHHHHHHHTTSCG-GGEEEECBGGGSC-HHHHHHHHHHHTCCEEE
T ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCC-CCCCEEECCCCCH-HHHHHHHHHHHCCCEEE
T ss_conf 316579999999997298067604756677879999999999984668-6450554588356-99999999991999999
Q ss_pred ECCE
Q ss_conf 2000
Q gi|254780178|r 268 CVMP 271 (378)
Q Consensus 268 ~~~p 271 (378)
|+.-
T Consensus 232 ~tl~ 235 (307)
T 1ydo_A 232 GSAG 235 (307)
T ss_dssp EBGG
T ss_pred ECCC
T ss_conf 6674
No 42
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=64.87 E-value=6.7 Score=18.02 Aligned_cols=74 Identities=15% Similarity=0.214 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECC-----CCHHHHHHHHHHHCCCCEEEECC
Q ss_conf 6899998876422234676641356751678998999898507703310025-----41018999999853898366200
Q gi|254780178|r 196 NLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLM-----GVGTPDDILKSVSYGVDMFDCVM 270 (378)
Q Consensus 196 dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~-----G~G~P~~i~~~v~~GvDlFD~~~ 270 (378)
+--.+-++.+.+.+++-+.|..-.....-+++.+++..+...+|. .|..++ |.+ ....+.|+..|+|.+||+.
T Consensus 156 ~~~~~~~~~~~~~g~d~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~-~~i~~H~Hn~~GlA-~an~laAi~aGa~~vd~ti 233 (298)
T 2cw6_A 156 AKVAEVTKKFYSMGCYEISLGDTIGVGTPGIMKDMLSAVMQEVPL-AALAVHCHDTYGQA-LANTLMALQMGVSVVDSSV 233 (298)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEETTSCCCHHHHHHHHHHHHHHSCG-GGEEEEEBCTTSCH-HHHHHHHHHTTCCEEEEBT
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CCEEEEECCCCCHH-HHHHHHHHHHCCCEEEECC
T ss_conf 999999999997288634668853237889999999999984899-84588967983289-9999999991999999535
Q ss_pred E
Q ss_conf 0
Q gi|254780178|r 271 P 271 (378)
Q Consensus 271 p 271 (378)
-
T Consensus 234 ~ 234 (298)
T 2cw6_A 234 A 234 (298)
T ss_dssp T
T ss_pred C
T ss_conf 1
No 43
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=61.72 E-value=7.6 Score=17.65 Aligned_cols=16 Identities=13% Similarity=0.125 Sum_probs=7.5
Q ss_pred HHHHHHHCCCCEEEEE
Q ss_conf 9999873289779960
Q gi|254780178|r 131 SVHIQNLLGSDIQMQL 146 (378)
Q Consensus 131 ~i~~q~~lg~DI~~~L 146 (378)
..+.-+.+|.|-++..
T Consensus 82 ~a~~a~~~G~d~i~~~ 97 (286)
T 2r91_A 82 LAKYAESRGAEAVASL 97 (286)
T ss_dssp HHHHHHHTTCSEEEEC
T ss_pred HHHHHHHCCCCEEEEC
T ss_conf 9999998699989866
No 44
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling, bifunctional enzyme; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=58.76 E-value=8.5 Score=17.32 Aligned_cols=138 Identities=9% Similarity=0.055 Sum_probs=81.9
Q ss_pred HHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999873289779960121332211589999999889999999885135888605540234443668999988764222
Q gi|254780178|r 130 ESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKELD 209 (378)
Q Consensus 130 ~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~ 209 (378)
..+......+.|++.............+ . .+++++ . --....+...-+....|.-.+.++.+.+.+
T Consensus 97 ~~~~~a~~~~~~~~r~~~~~~~~~~~~~----~----~~~a~~---~---g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g 162 (345)
T 1nvm_A 97 HDLKNAYQAGARVVRVATHCTEADVSKQ----H----IEYARN---L---GMDTVGFLMMSHMIPAEKLAEQGKLMESYG 162 (345)
T ss_dssp HHHHHHHHHTCCEEEEEEETTCGGGGHH----H----HHHHHH---H---TCEEEEEEESTTSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCEEEEEEEHHHHHHHHH----H----HHHHHH---H---CCCCCEEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf 8999998749886888400347776889----9----999998---2---663000220255676356778999998439
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECC-----CCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCC
Q ss_conf 34676641356751678998999898507703310025-----41018999999853898366200000233200245
Q gi|254780178|r 210 LKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLM-----GVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFT 282 (378)
Q Consensus 210 ~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~-----G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t 282 (378)
.+.+.|.--.....-+++.+++..+...++++.|..++ |.+ ....+.|+..|+|.+||+.-=.-.|-|.+=|
T Consensus 163 ~~~i~l~DT~G~~~P~~v~~~v~~l~~~~~~~i~ig~H~Hnd~GlA-~AN~laA~~aGa~~id~ti~G~G~~~GN~~t 239 (345)
T 1nvm_A 163 ATCIYMADSGGAMSMNDIRDRMRAFKAVLKPETQVGMHAHHNLSLG-VANSIVAVEEGCDRVDASLAGMGAGAGNAPL 239 (345)
T ss_dssp CSEEEEECTTCCCCHHHHHHHHHHHHHHSCTTSEEEEECBCTTSCH-HHHHHHHHHTTCCEEEEBGGGCSSTTCBCBH
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCH-HHHHHHHHHHCCCEEEEECCCCCCCCCCHHH
T ss_conf 7046623533466879999999999986277544215745886829-9999999992988898633558997886209
No 45
>2cw2_A Superoxide dismutase 1; SOD, oxidoreductase; 1.86A {Perkinsus marinus}
Probab=56.82 E-value=9.1 Score=17.10 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=21.6
Q ss_pred CCCEEEEEEE---CCEEEECCCEEECCCCCCCCCCCHHHHHH
Q ss_conf 9932799987---88754058574106868568868899986
Q gi|254780178|r 14 GSARLGEIIT---PRGVIKTPAFMPVGTAGTVKAMYFDQVRD 52 (378)
Q Consensus 14 ~~aR~G~L~t---~~g~i~TP~flpv~t~g~v~~lt~~~l~~ 52 (378)
...|.|.-.. ..|.++.|- +|+.-.+--|+|+.+.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~Lp~-LpY~~~aLeP~IS~~t~~~ 56 (226)
T 2cw2_A 16 PVLRMGLARCFSSVTGPFQCPP-LPYVKNALEPHMSAETLTY 56 (226)
T ss_dssp ------------CCCCSSCCCC-CSSCTTTTTTTSCHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCEECCC-CCCCCCCCCCCCCHHHHHH
T ss_conf 7888788764013577304899-9898564643069999999
No 46
>1m6j_A TIM, TPI, triosephosphate isomerase; asymmetry, monomer stability; 1.50A {Entamoeba histolytica} SCOP: c.1.1.1
Probab=56.77 E-value=7.5 Score=17.68 Aligned_cols=24 Identities=25% Similarity=0.627 Sum_probs=10.6
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 23467664135675167899899989
Q gi|254780178|r 209 DLKGYAIGGLAVGEPQEVMLHILSNV 234 (378)
Q Consensus 209 ~~~G~aIgGl~~ge~~~~~~~ii~~~ 234 (378)
++||+.|||.++ +.+.+.+|++.+
T Consensus 234 ~vDG~LVGgASl--~~~~F~~Ii~~~ 257 (261)
T 1m6j_A 234 DIDGFLVGGASL--DAAKFKTIINSV 257 (261)
T ss_dssp TCCEEEESGGGG--SHHHHHHHHGGG
T ss_pred CCCEEEEEHHHC--CHHHHHHHHHHH
T ss_conf 988588305756--878999999999
No 47
>1mo0_A TIM, triosephosphate isomerase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.70A {Caenorhabditis elegans} SCOP: c.1.1.1
Probab=54.60 E-value=9.3 Score=17.06 Aligned_cols=24 Identities=25% Similarity=0.733 Sum_probs=11.3
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 223467664135675167899899989
Q gi|254780178|r 208 LDLKGYAIGGLAVGEPQEVMLHILSNV 234 (378)
Q Consensus 208 ~~~~G~aIgGl~~ge~~~~~~~ii~~~ 234 (378)
-++||+.|||.++. + + +.+|++..
T Consensus 243 ~~vDG~LVGgASLd-~-e-F~~Ii~~~ 266 (275)
T 1mo0_A 243 PDIDGFLVGGASLK-P-D-FVKIINAR 266 (275)
T ss_dssp TTCCEEEESGGGGS-T-H-HHHHHHHH
T ss_pred CCCCEEEEEHHHCC-H-H-HHHHHHHH
T ss_conf 89886994047568-6-6-99999999
No 48
>2v5b_A Triosephosphate isomerase; TIM, unfolding, monotctim, glycosome, gluconeogenesis, lipid synthesis, monomeric mutant, glycolysis, pentose shunt; 2.00A {Trypanosoma cruzi}
Probab=53.50 E-value=9.2 Score=17.07 Aligned_cols=12 Identities=33% Similarity=1.021 Sum_probs=5.8
Q ss_pred HHHHHHHHCCCC
Q ss_conf 234676641356
Q gi|254780178|r 209 DLKGYAIGGLAV 220 (378)
Q Consensus 209 ~~~G~aIgGl~~ 220 (378)
++||+.|||.++
T Consensus 221 ~vDG~LVGgASL 232 (244)
T 2v5b_A 221 DINGFLVGGASL 232 (244)
T ss_dssp TCCEEEESGGGS
T ss_pred CCCEEEECHHHC
T ss_conf 989689521645
No 49
>2pcq_A Putative dihidrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, structural genomics, NPPSFA; 2.10A {Thermus thermophilus HB8}
Probab=52.26 E-value=11 Score=16.62 Aligned_cols=17 Identities=12% Similarity=0.055 Sum_probs=10.9
Q ss_pred HHHHHHHCCCCEEEECC
Q ss_conf 99999853898366200
Q gi|254780178|r 254 DILKSVSYGVDMFDCVM 270 (378)
Q Consensus 254 ~i~~~v~~GvDlFD~~~ 270 (378)
.++....+|.+-|-|..
T Consensus 180 ~~~~~l~~Ga~G~is~~ 196 (283)
T 2pcq_A 180 TFLGALALGAEGGILAA 196 (283)
T ss_dssp GHHHHHHTTCCEEECGG
T ss_pred HHHHHHCCCCCEEECCC
T ss_conf 77898707975560750
No 50
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid biosynthesis, cytoplasm, lysine biosynthesis; HET: AKG; 1.80A {Thermus thermophilus HB27} PDB: 2ztk_A* 2zyf_A* 3a9i_A*
Probab=51.77 E-value=11 Score=16.57 Aligned_cols=95 Identities=7% Similarity=0.046 Sum_probs=51.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEEC-----CCCHHHHHHHHH
Q ss_conf 055402344436689999887642223467664135675167899899989850770331002-----541018999999
Q gi|254780178|r 184 ALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYL-----MGVGTPDDILKS 258 (378)
Q Consensus 184 ~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l-----~G~G~P~~i~~~ 258 (378)
.-|...-+....+.-...+....+...+.+.|.--.....-++..+++..+...++++.|..+ +|.+ ....+.|
T Consensus 132 v~~~~~~~~~~~~~~l~~~~~~~~~gad~I~l~DT~G~~~P~~v~~~v~~l~~~~~~~~~i~~H~HNd~GlA-~ANalaA 210 (382)
T 2ztj_A 132 VRFSAEDTFRSEEQDLLAVYEAVAPYVDRVGLADTVGVATPRQVYALVREVRRVVGPRVDIEFHGHNDTGCA-IANAYEA 210 (382)
T ss_dssp EEEEETTTTTSCHHHHHHHHHHHGGGCSEEEEEETTSCCCHHHHHHHHHHHHHHHTTTSEEEEEEBCTTSCH-HHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCHH-HHHHHHH
T ss_conf 886125566753889999999875005279986788678836669999999985488877257307864669-9999999
Q ss_pred HHCCCCEEEECCEEECCCCCC
Q ss_conf 853898366200000233200
Q gi|254780178|r 259 VSYGVDMFDCVMPTRAGRHGL 279 (378)
Q Consensus 259 v~~GvDlFD~~~ptr~Ar~G~ 279 (378)
+..|+|.|||+.-=.-.|.|.
T Consensus 211 ~~aGa~~vd~tv~GlGeraGn 231 (382)
T 2ztj_A 211 IEAGATHVDTTILGIGERNGI 231 (382)
T ss_dssp HHTTCCEEEEBGGGCSSTTCB
T ss_pred HHHCCCEEEEECCCCCCCCCC
T ss_conf 981999999833443576567
No 51
>3krs_A Triosephosphate isomerase; ssgcid, SBRI, emerald biostructures, university of washington, NIH, niaid, structural genomics; 1.55A {Cryptosporidium parvum iowa II}
Probab=48.25 E-value=11 Score=16.57 Aligned_cols=23 Identities=26% Similarity=0.735 Sum_probs=11.9
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 22346766413567516789989998
Q gi|254780178|r 208 LDLKGYAIGGLAVGEPQEVMLHILSN 233 (378)
Q Consensus 208 ~~~~G~aIgGl~~ge~~~~~~~ii~~ 233 (378)
-++||..|||-++. + ++.+|++.
T Consensus 247 ~~vDG~LVGgASL~-~--~F~~Ii~~ 269 (271)
T 3krs_A 247 ADIDGFLVGGASLK-P--TFAKIIES 269 (271)
T ss_dssp TTCCEEEESGGGGS-T--THHHHHHH
T ss_pred CCCCEEEEEHHHCC-H--HHHHHHHH
T ss_conf 89897885105479-8--99999995
No 52
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=48.05 E-value=9.2 Score=17.09 Aligned_cols=66 Identities=23% Similarity=0.285 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCEEEECCEEECC------CC------CCCCCCCCC
Q ss_conf 567516789989998985077033100254101899999985389836620000023------32------002456210
Q gi|254780178|r 219 AVGEPQEVMLHILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAG------RH------GLAFTRFGK 286 (378)
Q Consensus 219 ~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~A------r~------G~~~t~~g~ 286 (378)
+.+-+.+ ++..+.. ..--++.|+.+|.++..+.++|.|+.- .+|.... +. +.-|-+.|=
T Consensus 95 SP~~~~~----v~~~a~~----~~i~~iPG~~TpsEi~~A~~~G~~~vK-lFPA~~~gG~~~lkal~~p~p~~~f~ptGG 165 (224)
T 1vhc_A 95 TPGLNPK----IVKLCQD----LNFPITPGVNNPMAIEIALEMGISAVK-FFPAEASGGVKMIKALLGPYAQLQIMPTGG 165 (224)
T ss_dssp CSSCCHH----HHHHHHH----TTCCEECEECSHHHHHHHHHTTCCEEE-ETTTTTTTHHHHHHHHHTTTTTCEEEEBSS
T ss_pred CCCCCHH----HHHHHHH----CCCCCCCCCCCHHHHHHHHHCCCCEEE-ECCCCCCCCHHHHHHHHCCCCCCEEEEECC
T ss_conf 2789999----9999985----699845885887999999985999688-765211258999985653456871885179
Q ss_pred HHHHHHH
Q ss_conf 0210123
Q gi|254780178|r 287 INLRNAR 293 (378)
Q Consensus 287 i~l~~~~ 293 (378)
+++.|..
T Consensus 166 V~~~N~~ 172 (224)
T 1vhc_A 166 IGLHNIR 172 (224)
T ss_dssp CCTTTHH
T ss_pred CCHHHHH
T ss_conf 8988999
No 53
>2cw3_A Pmsod2, iron superoxide dismutase; oxidoreductase; 2.50A {Perkinsus marinus}
Probab=47.06 E-value=13 Score=16.09 Aligned_cols=14 Identities=7% Similarity=0.199 Sum_probs=6.7
Q ss_pred CCCCEEEECCEEEC
Q ss_conf 38983662000002
Q gi|254780178|r 261 YGVDMFDCVMPTRA 274 (378)
Q Consensus 261 ~GvDlFD~~~ptr~ 274 (378)
+++|+.+=+|+..+
T Consensus 238 L~iDvWEHAYYlDY 251 (280)
T 2cw3_A 238 FTCDVWEHAYYLDY 251 (280)
T ss_dssp EEEECSGGGTHHHH
T ss_pred EEEEHHHHHHHHHH
T ss_conf 99626886608876
No 54
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, X-RAY analysis, stability, calorimetry lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=46.96 E-value=13 Score=16.08 Aligned_cols=120 Identities=12% Similarity=0.104 Sum_probs=70.8
Q ss_pred EECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 71299999998732897799601213322115899999998899999998851358886055402344436689999887
Q gi|254780178|r 125 RVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAER 204 (378)
Q Consensus 125 ~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~ 204 (378)
....+++++--...|.|-....|.+.. ....|...|.+. . -.+...|.- ...+.|.+.+..
T Consensus 94 ~~G~~~f~~~~~~~Gv~g~iipDlp~e-------------e~~~~~~~~~~~-g----l~~i~lvsp-tt~~~ri~~i~~ 154 (248)
T 1geq_A 94 RAGVRNFLAEAKASGVDGILVVDLPVF-------------HAKEFTEIAREE-G----IKTVFLAAP-NTPDERLKVIDD 154 (248)
T ss_dssp HHCHHHHHHHHHHHTCCEEEETTCCGG-------------GHHHHHHHHHHH-T----CEEEEEECT-TCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCCCEEEECCCCHH-------------HHHHHHHHHHCC-C----CCEEEEECC-CCHHHHHHHHHH
T ss_conf 357999999998679857860578866-------------766676565216-9----515898578-881999987763
Q ss_pred HHHHHHHHHHHHCCCC-CC---CHHHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEEE
Q ss_conf 6422234676641356-75---167899899989850770331002-541018999999853898366
Q gi|254780178|r 205 LKELDLKGYAIGGLAV-GE---PQEVMLHILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMFD 267 (378)
Q Consensus 205 l~~~~~~G~aIgGl~~-ge---~~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlFD 267 (378)
.+. +| -|.++-.++ |. ..+...+.+..+.... ++|..+ ||+.+|+++......|.|-.-
T Consensus 155 ~s~-gf-iY~vs~~GvTG~~~~~~~~~~~~i~~iK~~t--~~Pv~vGFGI~t~e~v~~~~~~~ADGVI 218 (248)
T 1geq_A 155 MTT-GF-VYLVSLYGTTGAREEIPKTAYDLLRRAKRIC--RNKVAVGFGVSKREHVVSLLKEGANGVV 218 (248)
T ss_dssp HCS-SE-EEEECCC-------CCCHHHHHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred CCC-CE-EEEECCCCCCCCCCCCCHHHHHHHHHHHCCC--CCCEEEEECCCCHHHHHHHHHCCCCEEE
T ss_conf 489-71-7984145557877543202577888751046--7863798246999999999874899999
No 55
>2j27_A Triosephosphate isomerase glycosomal; TIM, 2PG, LOOP7, glycosome, TIM-barrel, gluconeogenesis, lipid synthesis, atomic resolution; 1.15A {Trypanosoma brucei brucei} PDB: 2j24_A 1kv5_A 1tpe_A 1tsi_A* 3tim_A 2v2c_A 2v0t_A 1tri_A 1tti_A 1mss_A 1ttj_A* 2wsq_A 1ml1_A 2wsr_A 2v2h_A 2v2d_A 1dkw_A 2vei_A 2vek_A* 2vel_A ...
Probab=46.49 E-value=9.5 Score=17.00 Aligned_cols=22 Identities=32% Similarity=0.853 Sum_probs=11.1
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 2346766413567516789989998
Q gi|254780178|r 209 DLKGYAIGGLAVGEPQEVMLHILSN 233 (378)
Q Consensus 209 ~~~G~aIgGl~~ge~~~~~~~ii~~ 233 (378)
++||+.|||.++. + + +.+|+..
T Consensus 227 ~vDG~LVGgASl~-~-e-F~~Ii~~ 248 (250)
T 2j27_A 227 DVNGFLVGGASLK-P-E-FVDIIKA 248 (250)
T ss_dssp TCCEEEESGGGGS-T-T-HHHHHHT
T ss_pred CCCEEEECHHHCC-H-H-HHHHHHH
T ss_conf 9996884336468-7-9-9999985
No 56
>1o5x_A TIM, triosephosphate isomerase; 2- phosphoglycerate, META-phosphate, catalytic LOOP6; HET: 2PG; 1.10A {Plasmodium falciparum} SCOP: c.1.1.1 PDB: 1lzo_A 1m7o_A* 1m7p_A* 1lyx_A* 1ydv_A 2vfi_A* 2vfh_A* 2vff_A 2vfg_A* 1vga_A 1woa_A* 1wob_A 2vfd_A 2vfe_A*
Probab=45.83 E-value=8.7 Score=17.25 Aligned_cols=25 Identities=20% Similarity=0.585 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 4222346766413567516789989998
Q gi|254780178|r 206 KELDLKGYAIGGLAVGEPQEVMLHILSN 233 (378)
Q Consensus 206 ~~~~~~G~aIgGl~~ge~~~~~~~ii~~ 233 (378)
...++||+.|||-++. +.+.+|+..
T Consensus 222 ~~~~iDG~LVGgASL~---~~F~~Ii~~ 246 (248)
T 1o5x_A 222 QQEDIDGFLVGNASLK---ESFVDIIKS 246 (248)
T ss_dssp TSTTCCEEEECGGGGS---TTHHHHHHH
T ss_pred CCCCCCEEEEECHHCC---HHHHHHHHH
T ss_conf 6889896896023088---899999998
No 57
>2dp3_A Triosephosphate isomerase; enzyme, alpha/beta barrel; 2.10A {Giardia intestinalis}
Probab=44.40 E-value=14 Score=15.83 Aligned_cols=23 Identities=17% Similarity=0.592 Sum_probs=12.7
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 22346766413567516789989998
Q gi|254780178|r 208 LDLKGYAIGGLAVGEPQEVMLHILSN 233 (378)
Q Consensus 208 ~~~~G~aIgGl~~ge~~~~~~~ii~~ 233 (378)
-++||+.|||.++.. | +.++++.
T Consensus 229 ~~vDG~LVGgASL~~--e-f~~ii~i 251 (257)
T 2dp3_A 229 PNIDGFLVGGASLKP--E-FMTMIDI 251 (257)
T ss_dssp TTCCEEEESGGGGST--H-HHHHHHH
T ss_pred CCCCEEEEEHHHCCH--H-HHHHHHH
T ss_conf 898869950153596--6-9999999
No 58
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=44.05 E-value=11 Score=16.63 Aligned_cols=46 Identities=17% Similarity=0.418 Sum_probs=30.7
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCEEEECCEEE
Q ss_conf 5675167899899989850770331002541018999999853898366200000
Q gi|254780178|r 219 AVGEPQEVMLHILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTR 273 (378)
Q Consensus 219 ~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr 273 (378)
+.+-+.+ +++.+.. ..--|+.|+.+|.++..+.++|.|+.- .+|..
T Consensus 94 sP~~~~~----v~~~a~~----~~i~~iPGv~TpsEi~~A~~~G~~~vK-~FPA~ 139 (214)
T 1wbh_A 94 SPGLTEP----LLKAATE----GTIPLIPGISTVSELMLGMDYGLKEFK-FFPAE 139 (214)
T ss_dssp ESSCCHH----HHHHHHH----SSSCEEEEESSHHHHHHHHHTTCCEEE-ETTTT
T ss_pred CCCCCHH----HHHHHHH----CCCCCCCCCCCHHHHHHHHHCCCCEEE-ECHHH
T ss_conf 5899999----9999985----499753784988999999985999599-76024
No 59
>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A
Probab=43.17 E-value=15 Score=15.70 Aligned_cols=47 Identities=28% Similarity=0.480 Sum_probs=31.0
Q ss_pred HHHHHHHH--CCCHHHHEEC-CCCHHHHHHHHHHHCCCC-------EEEECCEEECCCC
Q ss_conf 89998985--0770331002-541018999999853898-------3662000002332
Q gi|254780178|r 229 HILSNVLP--ILPVERPHYL-MGVGTPDDILKSVSYGVD-------MFDCVMPTRAGRH 277 (378)
Q Consensus 229 ~ii~~~~~--~LP~~kPr~l-~G~G~P~~i~~~v~~GvD-------lFD~~~ptr~Ar~ 277 (378)
+++..+.. .||. |.+- =|+.+|-|-.....||+| +|.|.-|.+-|+.
T Consensus 197 eLv~~v~~~GrLPV--vnFAAGGIATPADAALMMqLG~DGVFVGSGIFKS~dP~~rA~A 253 (305)
T 2nv1_A 197 ELLLQIKKDGKLPV--VNFAAGGVATPADAALMMQLGADGVFVGSGIFKSDNPAKFAKA 253 (305)
T ss_dssp HHHHHHHHHTSCSS--CEEBCSCCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHH
T ss_pred HHHHHHHHHCCCCE--EEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHH
T ss_conf 99999999789873--6750478798888999997399879977651367998999999
No 60
>3gvg_A Triosephosphate isomerase; cytoplasm, gluconeogenesis, glycolysis, pentose shunt, structural genomics; 1.55A {Mycobacterium tuberculosis}
Probab=42.61 E-value=15 Score=15.65 Aligned_cols=11 Identities=36% Similarity=0.746 Sum_probs=4.7
Q ss_pred HHHHHHHHCCC
Q ss_conf 23467664135
Q gi|254780178|r 209 DLKGYAIGGLA 219 (378)
Q Consensus 209 ~~~G~aIgGl~ 219 (378)
++||+.|||.+
T Consensus 254 ~vDG~LVGgAS 264 (283)
T 3gvg_A 254 DVDGGLVGGAS 264 (283)
T ss_dssp TCCEEEECGGG
T ss_pred CCCEEEECHHH
T ss_conf 98858831565
No 61
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=42.34 E-value=11 Score=16.43 Aligned_cols=49 Identities=16% Similarity=0.125 Sum_probs=32.8
Q ss_pred CCCCCHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 8669813368898999886857850899999999999999999999999985998999999999853
Q gi|254780178|r 303 AESHCSALRDYSRAYLHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQENWK 369 (378)
Q Consensus 303 ~~C~C~~C~~ytraYl~HL~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~~~~~~ 369 (378)
..-.|++|++-|- ..++-.+| ..+-..||+-|.+|.=++-+..|+...+
T Consensus 25 ~~lrCpvC~~qsI------~~S~s~~A------------~dmr~~I~~~i~~G~sd~eI~~~l~~rY 73 (84)
T 2hl7_A 25 QELRCPKCQNQDI------ADSNAPIA------------ADLRKQIYGQLQQGKSDGEIVDYMVARY 73 (84)
T ss_dssp HHEECTTSSSCBT------TTCCSHHH------------HHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHCCCCCCCCCCH------HCCCCHHH------------HHHHHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf 9567988799755------00787899------------9999999999996999999999999862
No 62
>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I, phosphoenolpyruvate:sugar phosphotransferase system, PTS; HET: NEP; 2.70A {Escherichia coli} PDB: 2kx9_A 2xdf_A
Probab=41.69 E-value=16 Score=15.55 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=25.0
Q ss_pred HHHEECCC--CHHHHHHHHHHHCCCCEEEECCEEECC
Q ss_conf 33100254--101899999985389836620000023
Q gi|254780178|r 241 ERPHYLMG--VGTPDDILKSVSYGVDMFDCVMPTRAG 275 (378)
Q Consensus 241 ~kPr~l~G--~G~P~~i~~~v~~GvDlFD~~~ptr~A 275 (378)
++|..+.| +|+|..++.++.+|+|-| |+.|....
T Consensus 496 g~~v~iCGe~a~dp~~~~~L~~lGi~~l-S~~p~~i~ 531 (575)
T 2hwg_A 496 GKWTGMCGELAGDERATLLLLGMGLDEF-SMSAISIP 531 (575)
T ss_dssp TCEEEECSTTTTCTTTHHHHHHTTCCEE-EECGGGHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEE-EECHHHHH
T ss_conf 9989995886679899999997799989-98857699
No 63
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica}
Probab=41.69 E-value=12 Score=16.27 Aligned_cols=29 Identities=21% Similarity=0.518 Sum_probs=23.9
Q ss_pred EECCCCHHHHHHHHHHHCCCCEEEECCEEE
Q ss_conf 002541018999999853898366200000
Q gi|254780178|r 244 HYLMGVGTPDDILKSVSYGVDMFDCVMPTR 273 (378)
Q Consensus 244 r~l~G~G~P~~i~~~v~~GvDlFD~~~ptr 273 (378)
.++.|+.+|.++..+.++|+|..- .+|..
T Consensus 114 ~~iPG~~TptEi~~A~~~G~~~vK-~FPA~ 142 (217)
T 3lab_A 114 VFLPGVATASEVMIAAQAGITQLK-CFPAS 142 (217)
T ss_dssp EEEEEECSHHHHHHHHHTTCCEEE-ETTTT
T ss_pred CCCCCCCCHHHHHHHHHCCCCEEE-ECCCC
T ss_conf 452785886799999976999599-64011
No 64
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=41.48 E-value=11 Score=16.46 Aligned_cols=69 Identities=16% Similarity=0.327 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCEEEECCEEEC
Q ss_conf 98876422234676641356751678998999898507703310025410189999998538983662000002
Q gi|254780178|r 201 SAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRA 274 (378)
Q Consensus 201 Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~ 274 (378)
+++++.+.+.||..|+. ..|.|.+ ....++.+...+..+.| ++|+.-=++++ +.++|..+.-..++.|-
T Consensus 223 ~~~eI~~~~pDgi~lS~-GPG~P~~-~~~~i~~i~~~~~~~~P--ilGICLGhQll-~~a~G~~~~k~~~gh~G 291 (379)
T 1a9x_B 223 SAEDVLKMNPDGIFLSN-GPGDPAP-CDYAITAIQKFLETDIP--VFGICLGHQLL-ALASGAKTVKMKFGHHG 291 (379)
T ss_dssp CHHHHHTTCCSEEEECC-CSBCSTT-CHHHHHHHHHHTTSCCC--EEEETHHHHHH-HHHTTCCEEEEEEEEEE
T ss_pred CHHHHHHCCCCEEEECC-CCCCCCH-HHHHHHHHHHHHHCCCC--EEEEEHHHHHH-HHHHCCEEEECCCCCCC
T ss_conf 99999841999899669-9999515-56899999999816998--89974778999-99839739978988889
No 65
>2vef_A Dihydropteroate synthase; antibiotic resistance, folic acid, transferase, biosynthesis, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A*
Probab=40.69 E-value=16 Score=15.45 Aligned_cols=105 Identities=18% Similarity=0.133 Sum_probs=51.8
Q ss_pred EECCCCCCEEEECHHHHHHHHHHC---CCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf 101445415871299999998732---89779960121332211589999999889999999885135888605540234
Q gi|254780178|r 115 FRSHIDGSLYRVSPEESVHIQNLL---GSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQG 191 (378)
Q Consensus 115 f~s~~dG~~~~ltpe~~i~~q~~l---g~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqG 191 (378)
=-|..||++ +++++..++-.+.+ |+||+=.=-+-|.+.+..-..++-.+|..--.+...+ .. ..++-|=
T Consensus 20 pDSFsdgg~-~~~~~~a~~~~~~mi~~GAdIIDIGgeSTrPga~~is~~eE~~Rl~pvi~~l~~----~~-~~~iSID-- 91 (314)
T 2vef_A 20 PDSFSDGGQ-FFALEQALQQARKLIAEGASMLDIGGESTRPGSSYVEIEEEIQRVVPVIKAIRK----ES-DVLISID-- 91 (314)
T ss_dssp C----------CHHHHHHHHHHHHHHTTCSEEEEECCC-----CHHHHHHHHHHHHHHHHHHHH----HC-CCEEEEE--
T ss_pred CCCCCCCCC-CCCHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCCHHHHHHHHHHHHHHHHC----CC-CCEEEEE--
T ss_conf 999999976-889999999999999879979998984179999747999999987679999841----68-9649995--
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH-HHCCCCCCCHHHHHHHHHHH
Q ss_conf 44366899998876422234676-64135675167899899989
Q gi|254780178|r 192 GDNINLRSFSAERLKELDLKGYA-IGGLAVGEPQEVMLHILSNV 234 (378)
Q Consensus 192 G~~~dLR~~Sa~~l~~~~~~G~a-IgGl~~ge~~~~~~~ii~~~ 234 (378)
--|-+-+++..+.+++-.- |.|+. ..+.|.+++...
T Consensus 92 ----T~~~~Va~~al~~Ga~iINDVsg~~---~d~~m~~vva~~ 128 (314)
T 2vef_A 92 ----TWKSQVAEAALAAGADLVNDITGLM---GDEKMPHVVAEA 128 (314)
T ss_dssp ----CSCHHHHHHHHHTTCCEEEETTTTC---SCTTHHHHHHHH
T ss_pred ----CCCHHHHHHHHHCCCCEEECCCCCC---CCCHHHHHHHHC
T ss_conf ----8973889999975973898464243---441268899863
No 66
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=40.44 E-value=16 Score=15.43 Aligned_cols=86 Identities=17% Similarity=0.209 Sum_probs=38.0
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH------------CCCCCCCHHHHHHHHHHHHHCCCHHHHEEC
Q ss_conf 58886055402344436689999887642223467664------------135675167899899989850770331002
Q gi|254780178|r 179 NQPGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIG------------GLAVGEPQEVMLHILSNVLPILPVERPHYL 246 (378)
Q Consensus 179 ~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIg------------Gl~~ge~~~~~~~ii~~~~~~LP~~kPr~l 246 (378)
+.+...+.+.+.+|...|-=...++.+.+...|++-|. |...+...+...+++.++.... ++|..+
T Consensus 631 ~~p~~~~Iasi~~~~~~ed~~~la~~~e~~gaD~iElNiScPn~~~~r~~g~~~g~~p~~~~~i~~~Vr~~~--~iPv~v 708 (1025)
T 1gte_A 631 DFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAV--QIPFFA 708 (1025)
T ss_dssp HCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHHC--SSCEEE
T ss_pred HCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC--CCCEEE
T ss_conf 178882697707999999999999998754999899979999998843223101469999999999997578--997899
Q ss_pred -C--CCHHHHHHHHHH-HCCCCEE
Q ss_conf -5--410189999998-5389836
Q gi|254780178|r 247 -M--GVGTPDDILKSV-SYGVDMF 266 (378)
Q Consensus 247 -~--G~G~P~~i~~~v-~~GvDlF 266 (378)
+ .+.++.++..++ +.|+|-+
T Consensus 709 KLsP~~tdi~~ia~aa~~~Gadgv 732 (1025)
T 1gte_A 709 KLTPNVTDIVSIARAAKEGGADGV 732 (1025)
T ss_dssp EECSCSSCHHHHHHHHHHHTCSEE
T ss_pred ECCCCCHHHHHHHHHHHHCCCCEE
T ss_conf 828881629999999998499899
No 67
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta- barrel, lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=40.15 E-value=14 Score=15.92 Aligned_cols=40 Identities=25% Similarity=0.474 Sum_probs=28.4
Q ss_pred HHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCEEEECCEEE
Q ss_conf 899989850770331002541018999999853898366200000
Q gi|254780178|r 229 HILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTR 273 (378)
Q Consensus 229 ~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr 273 (378)
++++.+.. ..--++.|+-+|.++..+.++|.|+.- .+|..
T Consensus 110 ~v~~~a~~----~~i~~iPGv~TpsEi~~A~~~G~~~vK-~FPA~ 149 (225)
T 1mxs_A 110 DILEAGVD----SEIPLLPGISTPSEIMMGYALGYRRFK-LFPAE 149 (225)
T ss_dssp HHHHHHHH----CSSCEECEECSHHHHHHHHTTTCCEEE-ETTHH
T ss_pred HHHHHHHH----CCCCCCCCCCCHHHHHHHHHCCCCEEE-ECCCC
T ss_conf 99999986----599725786998999999986998187-76401
No 68
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=39.69 E-value=17 Score=15.35 Aligned_cols=81 Identities=11% Similarity=-0.020 Sum_probs=44.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHC
Q ss_conf 86055402344436689999887642223467664135675167899899989850770331002541018999999853
Q gi|254780178|r 182 GKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGVGTPDDILKSVSY 261 (378)
Q Consensus 182 ~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~ 261 (378)
...+.|.+.|.. |- .+-++.|.+-+.+-+.|.. +.|.. +.+.+.+..+....|.+-+...=.+.+++....++..
T Consensus 230 grL~vaAAv~~~--d~-~eRa~aLveAGvD~lvID~-AhG~s-~~~~~~i~~ik~~~~~~~~viaGNv~T~~~a~~L~~~ 304 (503)
T 1me8_A 230 KRYLVGAGINTR--DF-RERVPALVEAGADVLCIDS-SDGFS-EWQKITIGWIREKYGDKVKVGAGNIVDGEGFRYLADA 304 (503)
T ss_dssp SCBCCEEEECSS--SH-HHHHHHHHHHTCSEEEECC-SCCCS-HHHHHHHHHHHHHHGGGSCEEEEEECSHHHHHHHHHH
T ss_pred HCEEEEEEECCC--CH-HHHHHHHHHCCCCEEEEEC-HHHHH-HHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHH
T ss_conf 015677862364--58-9999999974998799610-23456-8899999999975788604735854588999999981
Q ss_pred CCCEEE
Q ss_conf 898366
Q gi|254780178|r 262 GVDMFD 267 (378)
Q Consensus 262 GvDlFD 267 (378)
|+|.+-
T Consensus 305 gad~ik 310 (503)
T 1me8_A 305 GADFIK 310 (503)
T ss_dssp TCSEEE
T ss_pred CCCEEE
T ss_conf 878688
No 69
>1b9b_A TIM, protein (triosephosphate isomerase); thermophilic; 2.85A {Thermotoga maritima} SCOP: c.1.1.1
Probab=39.55 E-value=12 Score=16.32 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=13.1
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 234676641356751678998999898
Q gi|254780178|r 209 DLKGYAIGGLAVGEPQEVMLHILSNVL 235 (378)
Q Consensus 209 ~~~G~aIgGl~~ge~~~~~~~ii~~~~ 235 (378)
++||..|||-++. +++.+++..+.
T Consensus 228 ~iDG~LVG~ASL~---~~F~~I~~~~~ 251 (255)
T 1b9b_A 228 DIDGGLVGGASLK---ESFIELARIMR 251 (255)
T ss_dssp TCCEEEESGGGTS---THHHHHHHHHT
T ss_pred CCCEEEECCHHCC---HHHHHHHHHHH
T ss_conf 9997886222078---78999999999
No 70
>1pl4_A Superoxide dismutase [MN], mitochondrial; oxidoreductase; 1.47A {Homo sapiens} SCOP: a.2.11.1 d.44.1.1 PDB: 1n0j_A 1luv_A 1msd_A 2adq_B 1pm9_A 3c3t_A 1ap6_A 1ap5_A 1var_A 3c3s_A 1em1_A 1qnm_A 1zte_A 1luw_A 2gds_A 1zuq_A 2adp_A* 1zsp_A 1n0n_A 2p4k_A ...
Probab=39.53 E-value=17 Score=15.34 Aligned_cols=19 Identities=5% Similarity=0.017 Sum_probs=12.4
Q ss_pred EECCCCCCCCCCCHHHHHH
Q ss_conf 4106868568868899986
Q gi|254780178|r 34 MPVGTAGTVKAMYFDQVRD 52 (378)
Q Consensus 34 lpv~t~g~v~~lt~~~l~~ 52 (378)
+|+.-.+--|.|+.+.|+.
T Consensus 7 LpY~~~aLeP~is~~t~~~ 25 (198)
T 1pl4_A 7 LPYDYGALEPHINAQIMQL 25 (198)
T ss_dssp CSSCTTTTTTTSCHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHH
T ss_conf 9988453666279999999
No 71
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=39.20 E-value=17 Score=15.35 Aligned_cols=46 Identities=22% Similarity=0.371 Sum_probs=31.7
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCEEEECCEEE
Q ss_conf 5675167899899989850770331002541018999999853898366200000
Q gi|254780178|r 219 AVGEPQEVMLHILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTR 273 (378)
Q Consensus 219 ~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr 273 (378)
+.+-+.+ ++..+. ....-++.|+-+|.++..+.++|+|+.- .+|..
T Consensus 89 sP~~~~~----v~~~~~----~~~~~~iPGv~TptEi~~A~~~G~~~vK-~FPa~ 134 (205)
T 1wa3_A 89 SPHLDEE----ISQFCK----EKGVFYMPGVMTPTELVKAMKLGHTILK-LFPGE 134 (205)
T ss_dssp CSSCCHH----HHHHHH----HHTCEEECEECSHHHHHHHHHTTCCEEE-ETTHH
T ss_pred CCCCCHH----HHHHHH----HCCCCCCCCCCCCHHHHHHHHCCCCEEE-ECCHH
T ss_conf 7999999----999999----8399822774871589999976999797-45121
No 72
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus HB8} PDB: 2yw4_A
Probab=39.10 E-value=14 Score=15.84 Aligned_cols=72 Identities=19% Similarity=0.308 Sum_probs=40.6
Q ss_pred CEEEEECCCCC-CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHC
Q ss_conf 60554023444-36689999887642223467664135675167899899989850770331002541018999999853
Q gi|254780178|r 183 KALFGIVQGGD-NINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGVGTPDDILKSVSY 261 (378)
Q Consensus 183 ~~lfgiVqGG~-~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~ 261 (378)
+.++|+ |.. ..|.-++ ..+.+.+ |. ++.+-+.+ +++.+.. ..--++.|+.+|.++..+.++
T Consensus 62 ~~~iGa--GTV~~~~~~~~----a~~aGa~-Fi---vSP~~~~~----v~~~a~~----~~i~~iPGv~TpsEi~~A~~~ 123 (207)
T 2yw3_A 62 GLLLGA--GTVRSPKEAEA----ALEAGAA-FL---VSPGLLEE----VAALAQA----RGVPYLPGVLTPTEVERALAL 123 (207)
T ss_dssp SCEEEE--ESCCSHHHHHH----HHHHTCS-EE---EESSCCHH----HHHHHHH----HTCCEEEEECSHHHHHHHHHT
T ss_pred CCEEEE--HHCCCHHHHHH----HHHCCCC-EE---ECCCCCHH----HHHHHHH----CCCCEECCCCCHHHHHHHHHC
T ss_conf 858931--12057789999----9980999-89---85888699----9999996----299751787999999999976
Q ss_pred CCCEEEECCEEE
Q ss_conf 898366200000
Q gi|254780178|r 262 GVDMFDCVMPTR 273 (378)
Q Consensus 262 GvDlFD~~~ptr 273 (378)
|.|+.- .+|..
T Consensus 124 G~~~vK-~FPA~ 134 (207)
T 2yw3_A 124 GLSALK-FFPAE 134 (207)
T ss_dssp TCCEEE-ETTTT
T ss_pred CCCEEE-ECHHH
T ss_conf 999798-66033
No 73
>2wqd_A Phosphoenolpyruvate-protein phosphotransferase; kinase, cytoplasm, transport, magnesium, PEP- utilising enzyme, phosphotransferase system; 2.40A {Staphylococcus aureus} PDB: 2hro_A
Probab=38.80 E-value=13 Score=15.99 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=26.2
Q ss_pred HHHHEECCC--CHHHHHHHHHHHCCCCEEEECCEEECCC
Q ss_conf 033100254--1018999999853898366200000233
Q gi|254780178|r 240 VERPHYLMG--VGTPDDILKSVSYGVDMFDCVMPTRAGR 276 (378)
Q Consensus 240 ~~kPr~l~G--~G~P~~i~~~v~~GvDlFD~~~ptr~Ar 276 (378)
.++|..+.| +|+|..++.++.+|+|-| |+.|....+
T Consensus 497 ~~~~v~vCGe~a~dp~~~~~L~~lGi~~l-Sv~p~~i~~ 534 (572)
T 2wqd_A 497 EGKWTGMCGEMAGDETAIPLLLGLGLDEF-SMSATSILK 534 (572)
T ss_dssp TTCEEEECSGGGGCTTTHHHHHHHTCCEE-EECHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCEE-EECHHHHHH
T ss_conf 69989981898689799999997699989-988788999
No 74
>1yya_A Triosephosphate isomerase; riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.60A {Thermus thermophilus HB8}
Probab=38.08 E-value=18 Score=15.19 Aligned_cols=75 Identities=16% Similarity=0.134 Sum_probs=33.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHH-HHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf 33221158999999988999999988513588860554023444366899998876-42223467664135675167899
Q gi|254780178|r 150 LALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERL-KELDLKGYAIGGLAVGEPQEVML 228 (378)
Q Consensus 150 ~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l-~~~~~~G~aIgGl~~ge~~~~~~ 228 (378)
|...++.+.++++...-.+++.+.........-..|+| |.+.++- ++++ ..-++||+.|||.++ +.+.+.
T Consensus 173 tg~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~~v~ilYG---GSV~~~N----~~~i~~~~~vDG~LVG~ASl--~~~~F~ 243 (250)
T 1yya_A 173 TGKNATPEDAEAMHQAIRKALSERYGEAFASRVRILYG---GSVNPKN----FADLLSMPNVDGGLVGGASL--ELESFL 243 (250)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHHHHCHHHHTTCEEEEE---SSCCTTT----HHHHHTSTTCCEEEESGGGS--SHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEC---CCCCHHH----HHHHHCCCCCCEEEECHHHC--CHHHHH
T ss_conf 89889868999999999999998511422377638962---8889869----99985678998688425657--889999
Q ss_pred HHHHH
Q ss_conf 89998
Q gi|254780178|r 229 HILSN 233 (378)
Q Consensus 229 ~ii~~ 233 (378)
+|+..
T Consensus 244 ~Ii~~ 248 (250)
T 1yya_A 244 ALLRI 248 (250)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99996
No 75
>1vbg_A Pyruvate,orthophosphate dikinase; transferase, maize, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Zea mays} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1vbh_A*
Probab=36.10 E-value=19 Score=14.98 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=18.5
Q ss_pred EECCCCHHHHHHHHHHHCCCCEE
Q ss_conf 00254101899999985389836
Q gi|254780178|r 244 HYLMGVGTPDDILKSVSYGVDMF 266 (378)
Q Consensus 244 r~l~G~G~P~~i~~~v~~GvDlF 266 (378)
..+..++.|.++..+...|+|-+
T Consensus 538 ~~~aNi~~~~~~~~~~~~gadGi 560 (876)
T 1vbg_A 538 KVLANADTPDDALTARNNGAQGI 560 (876)
T ss_dssp EEEEECSSHHHHHHHHHTTCCSE
T ss_pred EEEECCCCHHHHHHHHHCCCCCC
T ss_conf 98625798678999984899888
No 76
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=35.90 E-value=19 Score=14.96 Aligned_cols=48 Identities=21% Similarity=0.244 Sum_probs=34.9
Q ss_pred HHHHHHHHHCCCHHHHEECC-CCHHHHHHHHHHHCCCCEEEECCEEECC
Q ss_conf 98999898507703310025-4101899999985389836620000023
Q gi|254780178|r 228 LHILSNVLPILPVERPHYLM-GVGTPDDILKSVSYGVDMFDCVMPTRAG 275 (378)
Q Consensus 228 ~~ii~~~~~~LP~~kPr~l~-G~G~P~~i~~~v~~GvDlFD~~~ptr~A 275 (378)
.+.+..+...++.+-|...- |+-++.|++.+++||.|+.=-+-|...|
T Consensus 267 ~~~L~~~~~~~~~~~~viasGGIR~G~DvaKALALGAd~Vgiarp~L~a 315 (370)
T 1gox_A 267 IMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFS 315 (370)
T ss_dssp HHHHHHHHHHTTTSSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECHHHHHH
T ss_conf 8888998755167712785387574789999998499989876899999
No 77
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural genomics, joint center for structural genomics, JCSG; 2.18A {Thermotoga maritima MSB8} SCOP: c.1.5.1
Probab=35.54 E-value=19 Score=14.93 Aligned_cols=22 Identities=14% Similarity=0.288 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHH---CCCHHHHHH
Q ss_conf 9999999999998---599899999
Q gi|254780178|r 341 YQDLMKEIRSAIA---EDCFVDFAM 362 (378)
Q Consensus 341 ~~~~~~~iR~aI~---~g~f~~~~~ 362 (378)
..+++..+|.++- ..++.+|.+
T Consensus 437 ~~~l~gglrs~m~y~G~~~l~el~~ 461 (494)
T 1vrd_A 437 VHQLVGGLRSGMGYIGARTIKELQE 461 (494)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHC
T ss_conf 9999999999876428763989844
No 78
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=35.28 E-value=19 Score=14.90 Aligned_cols=218 Identities=19% Similarity=0.200 Sum_probs=99.9
Q ss_pred EEECCEEEECCCEEECCCCCCCCCCCHH----HHHHCCCCEEEEEHHHHHHCCCHHHHHHCCCCHHHCCCCCCE-E-ECC
Q ss_conf 9878875405857410686856886889----998609989993226657387689986527420110157722-4-114
Q gi|254780178|r 21 IITPRGVIKTPAFMPVGTAGTVKAMYFD----QVRDLGADVILGNAYHLMLRPGAERIARLGGLHKFIRWFKPI-L-TDS 94 (378)
Q Consensus 21 L~t~~g~i~TP~flpv~t~g~v~~lt~~----~l~~~g~~~il~Ntyhl~~~pg~~~i~~~gGlh~fl~~~~~i-l-TDS 94 (378)
|..+...+.-- +.++|. |.-+++ -++..|++++-.- ..|-.... .....+-.++.|.+.. | ..+
T Consensus 4 L~I~g~~f~SR--LilGTg---ky~s~~~~~~ai~aSgaeivTvA----lRR~~~~~-~~~~~~l~~i~~~~~~~LPNTA 73 (264)
T 1xm3_A 4 LTIGGKSFQSR--LLLGTG---KYPSFDIQKEAVAVSESDILTFA----VRRMNIFE-ASQPNFLEQLDLSKYTLLPNTA 73 (264)
T ss_dssp EEETTEEESCC--EEEECS---CSSCHHHHHHHHHHHTCSEEEEE----TTSSTTC--------CTTCCGGGSEEEEECT
T ss_pred EEECCEEEECC--EEEECC---CCCCHHHHHHHHHHHCCCEEEEE----EEEECCCC-CCCHHHHHHHHCCCEEECCCCC
T ss_conf 79999997843--278738---99999999999998699879999----97653777-7735789875006848746442
Q ss_pred CCCCCCHHHHCCCCCCCCEEEECCCCCCEEEECHHHHHHHH----HHCCCCEEE---EEHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 54321012210223333102101445415871299999998----732897799---60121332211589999999889
Q gi|254780178|r 95 GGFQVMSLSKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQ----NLLGSDIQM---QLDECLALPAEDKELKRAMELSL 167 (378)
Q Consensus 95 GgfQv~sl~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q----~~lg~DI~~---~LD~~~~~~~~~k~~~~sv~rT~ 167 (378)
|. .|.++.++.- +..+.|++= .-|+-+-.+++.+ |.
T Consensus 74 Gc-----------------------------~tA~EAVr~A~lARE~~~t~wIKLEVi~D~~~LlPD~~e--------tl 116 (264)
T 1xm3_A 74 GA-----------------------------STAEEAVRIARLAKASGLCDMIKVEVIGCSRSLLPDPVE--------TL 116 (264)
T ss_dssp TC-----------------------------SSHHHHHHHHHHHHHTTCCSSEEECCBCCTTTCCBCHHH--------HH
T ss_pred CC-----------------------------CCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHH--------HH
T ss_conf 55-----------------------------789999999999997449976899954898775988478--------99
Q ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH-----HHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 9999998851358886055402344436689999887642223-----46766413567516789989998985077033
Q gi|254780178|r 168 RWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKELDL-----KGYAIGGLAVGEPQEVMLHILSNVLPILPVER 242 (378)
Q Consensus 168 ~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~-----~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~k 242 (378)
+-++...+ ++=..++-+ ..|+.. ++.+.+.+. -|=.||. ..|-......+++-. . .+-
T Consensus 117 ~Aae~Lv~-----eGF~VlpY~----~~D~v~--akrLed~Gc~avMPlgsPIGS-g~Gl~n~~~l~~i~e---~--~~v 179 (264)
T 1xm3_A 117 KASEQLLE-----EGFIVLPYT----SDDVVL--ARKLEELGVHAIMPGASPIGS-GQGILNPLNLSFIIE---Q--AKV 179 (264)
T ss_dssp HHHHHHHH-----TTCCEEEEE----CSCHHH--HHHHHHHTCSCBEECSSSTTC-CCCCSCHHHHHHHHH---H--CSS
T ss_pred HHHHHHHH-----CCCEEEEEE----CCCHHH--HHHHHHCCCEEEEEECCCCCC-CCCCCCHHHHHHHHH---C--CCC
T ss_conf 99999997-----898799960----789899--999997699199851340136-877679899999996---6--898
Q ss_pred HEEC-CCCHHHHHHHHHHHCCCCEE--EE-----CCEEECCCCCCCCCCCCCH-----HHHHHHHCCCCCCCC
Q ss_conf 1002-54101899999985389836--62-----0000023320024562100-----210123223688559
Q gi|254780178|r 243 PHYL-MGVGTPDDILKSVSYGVDMF--DC-----VMPTRAGRHGLAFTRFGKI-----NLRNARHIDDMRPLD 302 (378)
Q Consensus 243 Pr~l-~G~G~P~~i~~~v~~GvDlF--D~-----~~ptr~Ar~G~~~t~~g~i-----~l~~~~~~~d~~pi~ 302 (378)
|..+ -|+|+|-+...+.++|+|-. .+ .-|.+.|+.=..-..-|+. .+....|..-.+|+.
T Consensus 180 PvIVDAGIG~pSdAa~AMElG~DaVLvNTAIA~A~dPv~MA~A~~~AV~AGR~a~~AG~~~~~~~A~aSSP~~ 252 (264)
T 1xm3_A 180 PVIVDAGIGSPKDAAYAMELGADGVLLNTAVSGADDPVKMARAMKLAVEAGRLSYEAGRIPLKQYGTASSPGE 252 (264)
T ss_dssp CBEEESCCCSHHHHHHHHHTTCSEEEESHHHHTSSSHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCTTSTTC
T ss_pred CEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 8898479898889999997458899855465628998999999999999999999768987677400899977
No 79
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=35.19 E-value=16 Score=15.52 Aligned_cols=24 Identities=25% Similarity=0.547 Sum_probs=20.7
Q ss_pred HHEEC-CCCHHHHHHHHHHHCCCCE
Q ss_conf 31002-5410189999998538983
Q gi|254780178|r 242 RPHYL-MGVGTPDDILKSVSYGVDM 265 (378)
Q Consensus 242 kPr~l-~G~G~P~~i~~~v~~GvDl 265 (378)
-|..+ -|+|+|.+...+.++|+|-
T Consensus 179 vPvivDAGIG~pSdAa~aMElG~Da 203 (268)
T 2htm_A 179 PPVVVDAGLGLPSHAAEVMELGLDA 203 (268)
T ss_dssp SCBEEESCCCSHHHHHHHHHTTCCE
T ss_pred CCEEEECCCCCHHHHHHHHHCCCCE
T ss_conf 8768635889989999999747989
No 80
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus HB8}
Probab=34.42 E-value=20 Score=14.81 Aligned_cols=31 Identities=13% Similarity=0.130 Sum_probs=13.5
Q ss_pred HHHHCCCHHHHEECCCCHHHHHHHHHHHCCCC
Q ss_conf 89850770331002541018999999853898
Q gi|254780178|r 233 NVLPILPVERPHYLMGVGTPDDILKSVSYGVD 264 (378)
Q Consensus 233 ~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvD 264 (378)
......|+.+|+-+ -+-+..+...+++.|+|
T Consensus 188 ~~k~~~~~~~~IeV-Ev~~~~e~~~a~~~gad 218 (286)
T 1x1o_A 188 RAKARAPHYLKVEV-EVRSLEELEEALEAGAD 218 (286)
T ss_dssp HHHHHSCTTSCEEE-EESSHHHHHHHHHHTCS
T ss_pred HHHHHHCCCCEEEE-EECCHHHHHHHHHCCCC
T ss_conf 99987257751899-95879999999865998
No 81
>2gpc_A Iron superoxide dismutase; alpha+beta structure, oxidoreductase; 1.90A {Trypanosoma cruzi} PDB: 3esf_A
Probab=33.84 E-value=20 Score=14.75 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=10.6
Q ss_pred EECCCCCCCC-CCCHHHHHH
Q ss_conf 4106868568-868899986
Q gi|254780178|r 34 MPVGTAGTVK-AMYFDQVRD 52 (378)
Q Consensus 34 lpv~t~g~v~-~lt~~~l~~ 52 (378)
+|+...+-.| .++.++|+.
T Consensus 7 Lpy~~~~LeP~~iS~~tl~~ 26 (194)
T 2gpc_A 7 LPWGYDGLAAKGLSKQQVTL 26 (194)
T ss_dssp CSSCTTTTGGGTCCHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHH
T ss_conf 99883457857739999999
No 82
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp}
Probab=32.97 E-value=7.8 Score=17.57 Aligned_cols=29 Identities=10% Similarity=0.038 Sum_probs=23.5
Q ss_pred CHHHHEEC-CCCHHHHHHHHHHHCCCCEEE
Q ss_conf 70331002-541018999999853898366
Q gi|254780178|r 239 PVERPHYL-MGVGTPDDILKSVSYGVDMFD 267 (378)
Q Consensus 239 P~~kPr~l-~G~G~P~~i~~~v~~GvDlFD 267 (378)
+.+.|... -|+.+|.++..+.++|.|-+=
T Consensus 179 ~~~ipvia~GGI~t~~d~~~~~~~GAd~V~ 208 (232)
T 3igs_A 179 DAGCRVIAEGRYNSPALAAEAIRYGAWAVT 208 (232)
T ss_dssp HTTCCEEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 378239985898999999999986999999
No 83
>2btm_A TIM, protein (triosephosphate isomerase); thermophilic triose-phosphate, glycolysis; 2.40A {Geobacillus stearothermophilus} SCOP: c.1.1.1 PDB: 1btm_A
Probab=32.81 E-value=21 Score=14.64 Aligned_cols=11 Identities=27% Similarity=0.715 Sum_probs=4.7
Q ss_pred HHHHHHHHCCC
Q ss_conf 23467664135
Q gi|254780178|r 209 DLKGYAIGGLA 219 (378)
Q Consensus 209 ~~~G~aIgGl~ 219 (378)
++||+.|||.+
T Consensus 226 ~vDG~LVG~AS 236 (252)
T 2btm_A 226 QIDGALVGGAS 236 (252)
T ss_dssp TCCEEEESGGG
T ss_pred CCCEEEECHHH
T ss_conf 98858843565
No 84
>3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A*
Probab=32.35 E-value=18 Score=15.09 Aligned_cols=36 Identities=28% Similarity=0.320 Sum_probs=30.8
Q ss_pred CHHHHEECCCCHHHHHHHHHHHCCCCEEEECCEEEC
Q ss_conf 703310025410189999998538983662000002
Q gi|254780178|r 239 PVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRA 274 (378)
Q Consensus 239 P~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~ 274 (378)
-.+.+.++..+-+|.++..++.+|||..-+.+|.+.
T Consensus 202 ~~g~~v~~wTvn~~~~~~~~~~~GvdgIiTD~P~~a 237 (250)
T 3ks6_A 202 AAGLDFGCWAAHTPSQITKALDLGVKVFTTDRPTLA 237 (250)
T ss_dssp HTTCEEEEECCCSHHHHHHHHHHTCSEEEESCHHHH
T ss_pred HCCCEEEEECCCCHHHHHHHHHCCCCEEEECCHHHH
T ss_conf 869999998899599999999769999998969999
No 85
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM- barrel, rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=31.71 E-value=22 Score=14.52 Aligned_cols=21 Identities=10% Similarity=-0.091 Sum_probs=18.6
Q ss_pred EECHHHHHHHHHHCCCCEEEE
Q ss_conf 712999999987328977996
Q gi|254780178|r 125 RVSPEESVHIQNLLGSDIQMQ 145 (378)
Q Consensus 125 ~ltpe~~i~~q~~lg~DI~~~ 145 (378)
..++++.++....-+||++..
T Consensus 40 ~~p~e~iv~~~~~~~~d~V~i 60 (137)
T 1ccw_A 40 LSPQELFIKAAIETKADAILV 60 (137)
T ss_dssp EECHHHHHHHHHHHTCSEEEE
T ss_pred CCCHHHHHHHHHHHCCCEEEE
T ss_conf 669999999999839987887
No 86
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=31.24 E-value=18 Score=15.08 Aligned_cols=193 Identities=22% Similarity=0.244 Sum_probs=86.8
Q ss_pred EEECCEEEECCCEEECCCCCCCCCCCHHH----HHHCCCCEEEEEHHHHHHCCCHHHHHHCCCCHHHCCCCCC--EEECC
Q ss_conf 98788754058574106868568868899----9860998999322665738768998652742011015772--24114
Q gi|254780178|r 21 IITPRGVIKTPAFMPVGTAGTVKAMYFDQ----VRDLGADVILGNAYHLMLRPGAERIARLGGLHKFIRWFKP--ILTDS 94 (378)
Q Consensus 21 L~t~~g~i~TP~flpv~t~g~v~~lt~~~----l~~~g~~~il~Ntyhl~~~pg~~~i~~~gGlh~fl~~~~~--ilTDS 94 (378)
|..+...+.-- +.++|. |.-+++. ++..|++++-.. ..|-....-....++-.++.|.+. +-..+
T Consensus 11 l~I~g~~f~SR--L~lGTg---ky~s~~~~~~ai~aSgaeivTvA----lRR~~~~~~~~~~~l~d~l~~~~~~~LPNTA 81 (265)
T 1wv2_A 11 FVIAGRTYGSR--LLVGTG---KYKDLDETRRAIEASGAEIVTVA----VRRTNIGQNPDEPNLLDVIPPDRYTILPNTA 81 (265)
T ss_dssp EEETTEEESCC--EEECCS---CSSSHHHHHHHHHHSCCSEEEEE----GGGCCC-------------CTTTSEEEEECT
T ss_pred EEECCEEEECC--EEEECC---CCCCHHHHHHHHHHHCCCEEEEE----EEECCCCCCCCCHHHHHHHCCCCEEECCCHH
T ss_conf 69999997852--688738---99999999999998599879999----7402566788712477763657838886668
Q ss_pred CCCCCCHHHHCCCCCCCCEEEECCCCCCEEEECHHHHHHHHH----HCCCCEEEEE----HHHCCCCCCHHHHHHHHHHH
Q ss_conf 543210122102233331021014454158712999999987----3289779960----12133221158999999988
Q gi|254780178|r 95 GGFQVMSLSKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQN----LLGSDIQMQL----DECLALPAEDKELKRAMELS 166 (378)
Q Consensus 95 GgfQv~sl~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~----~lg~DI~~~L----D~~~~~~~~~k~~~~sv~rT 166 (378)
|.+ |.|+.+..-+ .++.+..+.| |+.+-.+++.+-++ |
T Consensus 82 Gc~-----------------------------tAeEAv~~A~lARE~~~~~~~iKLEVi~d~~~L~Pd~~etl~-A---- 127 (265)
T 1wv2_A 82 GCY-----------------------------DAVEAVRTCRLARELLDGHNLVKLEVLADQKTLFPNVVETLK-A---- 127 (265)
T ss_dssp TCC-----------------------------SHHHHHHHHHHHHTTTTSCCEEEECCBSCTTTCCBCHHHHHH-H----
T ss_pred HHC-----------------------------CHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHH-H----
T ss_conf 854-----------------------------699999999999986489856999874698778977889999-9----
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH-----HHHHHHCCCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 99999998851358886055402344436689999887642223-----4676641356751678998999898507703
Q gi|254780178|r 167 LRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKELDL-----KGYAIGGLAVGEPQEVMLHILSNVLPILPVE 241 (378)
Q Consensus 167 ~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~-----~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~ 241 (378)
++.- . .++=..|+-+. .|+. -++.+.+.+. -|=.||. ..|-......++ +...+|
T Consensus 128 ---a~~L-v----k~gF~VlpY~~----dD~~--~ak~L~d~Gc~avMPlgsPIGS-g~Gi~n~~~l~~---i~~~~~-- 187 (265)
T 1wv2_A 128 ---AEQL-V----KDGFDVMVYTS----DDPI--IARQLAEIGCIAVMPLAGLIGS-GLGICNPYNLRI---ILEEAK-- 187 (265)
T ss_dssp ---HHHH-H----TTTCEEEEEEC----SCHH--HHHHHHHSCCSEEEECSSSTTC-CCCCSCHHHHHH---HHHHCS--
T ss_pred ---HHHH-H----HCCCEEEECCC----CCHH--HHHHHHHCCCEEECCCCCCCCC-CCCCCCHHHHHH---HHHCCC--
T ss_conf ---9999-9----78977962478----4699--9999875496375448321011-246367789999---985389--
Q ss_pred HHEEC-CCCHHHHHHHHHHHCCCCE-------EEECCEEECCC
Q ss_conf 31002-5410189999998538983-------66200000233
Q gi|254780178|r 242 RPHYL-MGVGTPDDILKSVSYGVDM-------FDCVMPTRAGR 276 (378)
Q Consensus 242 kPr~l-~G~G~P~~i~~~v~~GvDl-------FD~~~ptr~Ar 276 (378)
-|..+ -|+|+|-+-..+.++|+|- +.+--|.+.|+
T Consensus 188 vpviVDAGIG~pSdAa~aMElG~DaVLvNTAIa~a~dP~~MA~ 230 (265)
T 1wv2_A 188 VPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAHAKDPVMMAE 230 (265)
T ss_dssp SCBEEESCCCSHHHHHHHHHHTCSEEEESHHHHTSSSHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHH
T ss_conf 5299746889788999999714888985327563899899999
No 87
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=31.09 E-value=20 Score=14.82 Aligned_cols=17 Identities=24% Similarity=0.265 Sum_probs=8.7
Q ss_pred CCHHHHHHHHHHHCCCC
Q ss_conf 41018999999853898
Q gi|254780178|r 248 GVGTPDDILKSVSYGVD 264 (378)
Q Consensus 248 G~G~P~~i~~~v~~GvD 264 (378)
-+-+.++...++..|+|
T Consensus 213 Ev~~~~~~~~a~~~gad 229 (300)
T 3l0g_A 213 ECDNISQVEESLSNNVD 229 (300)
T ss_dssp EESSHHHHHHHHHTTCS
T ss_pred EECCHHHHHHHHHCCCE
T ss_conf 93769998876414864
No 88
>1x38_A Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domain fold, ligand-protein complex; HET: NAG BMA FUC MAN IDD GOL; 1.70A {Hordeum vulgare} SCOP: c.1.8.7 c.23.11.1 PDB: 1lq2_A* 1x39_A* 1ex1_A* 1ieq_A* 1iev_A* 1iew_A* 1iex_A* 1j8v_A*
Probab=30.07 E-value=24 Score=14.34 Aligned_cols=75 Identities=17% Similarity=0.124 Sum_probs=42.9
Q ss_pred CCCHHHCCCCCCEEECCCCCCCCHHHHCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCC------
Q ss_conf 74201101577224114543210122102233331021014454158712999999987328977996012133------
Q gi|254780178|r 78 GGLHKFIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLA------ 151 (378)
Q Consensus 78 gGlh~fl~~~~~ilTDSGgfQv~sl~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~------ 151 (378)
+-|++-++|+|.|+||.++-...+ . +. ..+.+.....--.-|.|+.|..++...
T Consensus 270 ~lLR~~~gF~G~VvSD~~~m~~~~--~-------------~~-----~~~~~~~~~~a~~aG~d~~~~~~~~~~~~~~l~ 329 (602)
T 1x38_A 270 GYLKDTLKFKGFVISDWEGIDRIT--T-------------PA-----GSDYSYSVKASILAGLDMIMVPNKYQQFISILT 329 (602)
T ss_dssp CCCCTTSCCCSEEECCTTTTGGGS--S-------------ST-----TTTHHHHHHHHHHHTCCBEECCSCHHHHHHHHH
T ss_pred HHHHHHCCCCCEECCCCHHHHCCC--C-------------CC-----CCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHC
T ss_conf 999986589855615513764333--4-------------55-----565046678998726873457754002221100
Q ss_pred -----CCCCHHHHHHHHHHHHHHHHH
Q ss_conf -----221158999999988999999
Q gi|254780178|r 152 -----LPAEDKELKRAMELSLRWAER 172 (378)
Q Consensus 152 -----~~~~~k~~~~sv~rT~~w~~~ 172 (378)
-..+.+|+.+||.|-++...+
T Consensus 330 ~av~~g~i~~~~id~av~RiL~~k~~ 355 (602)
T 1x38_A 330 GHVNGGVIPMSRIDDAVTRILRVKFT 355 (602)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 23448962899987899999999998
No 89
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=28.93 E-value=25 Score=14.21 Aligned_cols=120 Identities=12% Similarity=0.089 Sum_probs=67.1
Q ss_pred EECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 71299999998732897799601213322115899999998899999998851358886055402344436689999887
Q gi|254780178|r 125 RVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAER 204 (378)
Q Consensus 125 ~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~ 204 (378)
....+.+++--...|.|-....|.+.. . ...|.+.|.+. .- ..-.+..+ ...+.|.+.+..
T Consensus 108 ~~G~~~f~~~~~~~Gv~GliipDlp~e--e-----------~~~~~~~~~~~-~l-~~I~lvaP----tt~~~ri~~i~~ 168 (268)
T 1qop_A 108 NNGIDAFYARCEQVGVDSVLVADVPVE--E-----------SAPFRQAALRH-NI-APIFICPP----NADDDLLRQVAS 168 (268)
T ss_dssp TTCHHHHHHHHHHHTCCEEEETTCCGG--G-----------CHHHHHHHHHT-TC-EEECEECT----TCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCCCEEECCCCCHH--H-----------HHHHHHHHHHC-CC-CEEEEEEC----CCCHHHHHHHHH
T ss_conf 378789999999749866651588856--6-----------69999999735-98-26999826----897788999872
Q ss_pred HHHHHHHHHHHHCCCC-CCC---HHHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEEE
Q ss_conf 6422234676641356-751---67899899989850770331002-541018999999853898366
Q gi|254780178|r 205 LKELDLKGYAIGGLAV-GEP---QEVMLHILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMFD 267 (378)
Q Consensus 205 l~~~~~~G~aIgGl~~-ge~---~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlFD 267 (378)
.+ .+|- |.++-.++ |+. .....+.+..+...- ++|..+ ||+.+|+++..++..|.|..-
T Consensus 169 ~s-~gFi-Y~vs~~GvTG~~~~~~~~~~~~i~~ik~~t--~~Pv~vGFGI~~~e~v~~~~~~~ADGvV 232 (268)
T 1qop_A 169 YG-RGYT-YLLSRSGVTGAENRGALPLHHLIEKLKEYH--AAPALQGFGISSPEQVSAAVRAGAAGAI 232 (268)
T ss_dssp HC-CSCE-EEESSSSCCCSSSCC--CCHHHHHHHHHTT--CCCEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred CC-CCEE-EEEECCCCCCCCCCCCHHHHHHHHHHHHCC--CCCCEEEECCCCHHHHHHHHHCCCCEEE
T ss_conf 59-8647-871034678765431056899999997546--8883576156999999999863899899
No 90
>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis, hydrolase; 1.91A {Thermoanaerobacter tengcongensis MB4}
Probab=28.86 E-value=19 Score=14.97 Aligned_cols=37 Identities=16% Similarity=0.085 Sum_probs=31.7
Q ss_pred HHHHEECCCCHHHHHHHHHHHCCCCEEEECCEEECCC
Q ss_conf 0331002541018999999853898366200000233
Q gi|254780178|r 240 VERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGR 276 (378)
Q Consensus 240 ~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar 276 (378)
.+++.|+.++-+|.++..+.++|||.+-+.+|.+..+
T Consensus 210 ~g~~v~~wTvn~~~~~~~l~~~GvdgI~TD~P~~l~~ 246 (252)
T 2pz0_A 210 NGVKLFPWTVDRKEDMERMIKAGVDGIITDDPETLIN 246 (252)
T ss_dssp TTCEECCBCCCSHHHHHHHHHHTCSEEEESCHHHHHH
T ss_pred CCCEEEEEECCCHHHHHHHHHCCCCEEEECCHHHHHH
T ss_conf 7999999808999999999985999999794999999
No 91
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens}
Probab=28.49 E-value=16 Score=15.52 Aligned_cols=37 Identities=11% Similarity=0.172 Sum_probs=19.1
Q ss_pred HHHCCCHHHHEECCCCHHHHHHHHHHHCCCC--EEEECCE
Q ss_conf 9850770331002541018999999853898--3662000
Q gi|254780178|r 234 VLPILPVERPHYLMGVGTPDDILKSVSYGVD--MFDCVMP 271 (378)
Q Consensus 234 ~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvD--lFD~~~p 271 (378)
.....|+.+|..+ -+-+.++...++..|+| |+|-..|
T Consensus 190 ~~~~~~~~~~Iev-Ev~~~~ea~~a~~~g~d~I~LDn~s~ 228 (299)
T 2jbm_A 190 ARQAADFALKVEV-ECSSLQEAVQAAEAGADLVLLDNFKP 228 (299)
T ss_dssp HHHHHTTTSCEEE-EESSHHHHHHHHHTTCSEEEEESCCH
T ss_pred HHHHCCCCEEEEE-ECCCHHHHHHHHHCCCCEEEEECCCH
T ss_conf 9863167437897-04889999999972999999808899
No 92
>1jr8_A ERV2 protein, mitochondrial; FAD, sulfhydryl oxidase, helical bundle, CXXC, oxidoreductase; HET: FAD; 1.50A {Saccharomyces cerevisiae} SCOP: a.24.15.1 PDB: 1jra_A*
Probab=27.52 E-value=11 Score=16.45 Aligned_cols=34 Identities=9% Similarity=-0.110 Sum_probs=18.2
Q ss_pred CCCCHHHCCCCHHHHHHH---HHCCCHHHHHHHHHHH
Q ss_conf 669813368898999886---8578508999999999
Q gi|254780178|r 304 ESHCSALRDYSRAYLHHL---LRVNESLAGMILSWAN 337 (378)
Q Consensus 304 ~C~C~~C~~ytraYl~HL---~~~~E~l~~~Ll~iHN 337 (378)
-..|..|++|-..|+.-. +.+++.+..-|..+||
T Consensus 48 ~lPC~~Cr~hf~~~l~~~p~~~~sr~~l~~wl~~~HN 84 (117)
T 1jr8_A 48 LYPCGECSYHFVKLIEKYPVQTSSRTAAAMWGCHIHN 84 (117)
T ss_dssp HCSSHHHHHHHHHHHHHSCCCCSSHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 5894889978999998685324788999999999999
No 93
>1o4u_A Type II quinolic acid phosphoribosyltransferase; TM1645, structural genomics, JCSG, PSI, protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=27.04 E-value=9.9 Score=16.88 Aligned_cols=63 Identities=24% Similarity=0.341 Sum_probs=38.1
Q ss_pred HHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCC--EEEECCEEECCC---------CCCCCCCCCCHHHHHH
Q ss_conf 899989850770331002541018999999853898--366200000233---------2002456210021012
Q gi|254780178|r 229 HILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVD--MFDCVMPTRAGR---------HGLAFTRFGKINLRNA 292 (378)
Q Consensus 229 ~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvD--lFD~~~ptr~Ar---------~G~~~t~~g~i~l~~~ 292 (378)
+.+.......|.+++..+ -+-+..+...++..|+| |+|-..|....+ ....+--.|-||+.|.
T Consensus 181 ~~~~~~~~~~~~~~~i~v-Ev~~l~ea~~a~~~g~d~I~LDn~~~~~i~~~v~~l~~~~~~v~ieaSGGI~~~ni 254 (285)
T 1o4u_A 181 RAVQEVRKIIPFTTKIEV-EVENLEDALRAVEAGADIVMLDNLSPEEVKDISRRIKDINPNVIVEVSGGITEENV 254 (285)
T ss_dssp HHHHHHHTTSCTTSCEEE-EESSHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHHHHHCTTSEEEEEECCCTTTG
T ss_pred HHHHHHHHHCCCCCEEEE-EECHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHH
T ss_conf 899988875688862799-73329999999976999994289987889999999997589779999899979999
No 94
>1ad1_A DHPS, dihydropteroate synthetase; transferase, APO form, complex with OH-CH2-pterin-pyrophosphate; 2.20A {Staphylococcus aureus} SCOP: c.1.21.1 PDB: 1ad4_A*
Probab=26.81 E-value=27 Score=13.97 Aligned_cols=54 Identities=19% Similarity=0.030 Sum_probs=28.3
Q ss_pred ECCCCCCEEEECHHHHHHHHHH---CCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 0144541587129999999873---289779960121332211589999999889999
Q gi|254780178|r 116 RSHIDGSLYRVSPEESVHIQNL---LGSDIQMQLDECLALPAEDKELKRAMELSLRWA 170 (378)
Q Consensus 116 ~s~~dG~~~~ltpe~~i~~q~~---lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~ 170 (378)
-|..||++ +.+++..++-.+. -|+||+=.=.+-|.+.+..-..++-.+|-.--.
T Consensus 14 DSFsdgg~-~~~~~~a~~~~~~~i~~GAdiIDIGaeSTrPga~~i~~eeE~~Rl~pvl 70 (266)
T 1ad1_A 14 DSFSDGGK-FNNVESAVTRVKAMMDEGADIIDVGGVSTRPGHEMITVEEELNRVLPVV 70 (266)
T ss_dssp GGCSSTTT-TCSHHHHHHHHHHHHHTTCSEEEEESCCCSTTCCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCC-CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99998876-8899999999999998799899979861899998669999998840245
No 95
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Probab=26.63 E-value=27 Score=13.95 Aligned_cols=49 Identities=22% Similarity=0.296 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHHCCCHHHHEECC-CCHHHHHHHHHHHCCCCEEEECCEEECC
Q ss_conf 1678998999898507703310025-4101899999985389836620000023
Q gi|254780178|r 223 PQEVMLHILSNVLPILPVERPHYLM-GVGTPDDILKSVSYGVDMFDCVMPTRAG 275 (378)
Q Consensus 223 ~~~~~~~ii~~~~~~LP~~kPr~l~-G~G~P~~i~~~v~~GvDlFD~~~ptr~A 275 (378)
+.+...++... ...+-|.++- |+-++.||+.+++||.|..=-.-|..+|
T Consensus 293 ~~~~l~ei~~~----~~~~~~viadGGIR~G~DV~KALALGA~aV~iGRp~L~a 342 (392)
T 2nzl_A 293 TIDVLPEIVEA----VEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWG 342 (392)
T ss_dssp HHHHHHHHHHH----HTTSSEEEECSSCCSHHHHHHHHHTTCSEEEECHHHHHH
T ss_pred HHHHHHHHHHH----HCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECHHHHHH
T ss_conf 17775999997----447704996487475789999998599989887999999
No 96
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=26.52 E-value=24 Score=14.26 Aligned_cols=29 Identities=14% Similarity=0.170 Sum_probs=12.9
Q ss_pred HHCCCHHHHEECCCCHHHHHHHHHHHCCCC
Q ss_conf 850770331002541018999999853898
Q gi|254780178|r 235 LPILPVERPHYLMGVGTPDDILKSVSYGVD 264 (378)
Q Consensus 235 ~~~LP~~kPr~l~G~G~P~~i~~~v~~GvD 264 (378)
....|..++.- .-+-+.++...++..|+|
T Consensus 176 ~~~~~~~~~I~-vEv~~~~ea~~a~~~g~d 204 (273)
T 2b7n_A 176 RKNLPFTAKIE-IECESFEEAKNAMNAGAD 204 (273)
T ss_dssp GGGSCTTCCEE-EEESSHHHHHHHHHHTCS
T ss_pred HHHCCCCCEEE-EEECCHHHHHHHHHCCCC
T ss_conf 87479871599-997689999999874885
No 97
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor}
Probab=26.36 E-value=27 Score=13.91 Aligned_cols=120 Identities=13% Similarity=0.094 Sum_probs=69.9
Q ss_pred EECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 71299999998732897799601213322115899999998899999998851358886055402344436689999887
Q gi|254780178|r 125 RVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAER 204 (378)
Q Consensus 125 ~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~ 204 (378)
....+++++--...|.|=++..|.+. ... ..|...|.+. . -.+...|-.. ..+.|.+.+.+
T Consensus 111 ~~G~e~F~~~~~~~Gv~GviipDLp~--ee~-----------~~~~~~~~~~-g----l~~I~lvspt-t~~~Ri~~i~~ 171 (271)
T 3nav_A 111 ARGIDDFYQRCQKAGVDSVLIADVPT--NES-----------QPFVAAAEKF-G----IQPIFIAPPT-ASDETLRAVAQ 171 (271)
T ss_dssp HTCHHHHHHHHHHHTCCEEEETTSCG--GGC-----------HHHHHHHHHT-T----CEEEEEECTT-CCHHHHHHHHH
T ss_pred HCCHHHHHHHHHHCCCCEEEECCCCH--HHH-----------HHHHHHHHHC-C----CCEEEEECCC-CHHHHHHHHHH
T ss_conf 52899999999876994899458981--565-----------9999998767-9----7179994467-55889999986
Q ss_pred HHHHHHHHHHHHCCCC-CCC---HHHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEEE
Q ss_conf 6422234676641356-751---67899899989850770331002-541018999999853898366
Q gi|254780178|r 205 LKELDLKGYAIGGLAV-GEP---QEVMLHILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMFD 267 (378)
Q Consensus 205 l~~~~~~G~aIgGl~~-ge~---~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlFD 267 (378)
.+ .+| -|.++-.++ |.. .+...+.+..+... .++|..+ ||+.+|+++..+++.|.|-.-
T Consensus 172 ~a-~gf-iY~vs~~GvTG~~~~~~~~~~~~i~~ik~~--t~~Pv~vGFGI~~~e~v~~~~~~~ADGvV 235 (271)
T 3nav_A 172 LG-KGY-TYLLSRAGVTGAETKANMPVHALLERLQQF--DAPPALLGFGISEPAQVKQAIEAGAAGAI 235 (271)
T ss_dssp HC-CSC-EEECCCC--------CCHHHHHHHHHHHHT--TCCCEEECSSCCSHHHHHHHHHTTCSEEE
T ss_pred CC-CCC-EEEEECCCCCCCCCCCCCHHHHHHHHHHHC--CCCCEEEEEEECCHHHHHHHHHCCCCEEE
T ss_conf 18-873-898505556787766650289999987533--68972898301889999999873899999
No 98
>2vxn_A Triosephosphate isomerase; fatty acid biosynthesis, transition state analogue, glycolysis, pentose shunt, gluconeogenesis, TIM, PGH; HET: PGH PGA; 0.82A {Leishmania mexicana} PDB: 1if2_A* 1qds_A 1n55_A* 1amk_A 1tpf_A 1iig_A 1ag1_O* 1iih_A 1tpd_A 1trd_A* 2v5l_A 4tim_A* 5tim_A 6tim_A*
Probab=26.35 E-value=27 Score=13.91 Aligned_cols=23 Identities=30% Similarity=0.745 Sum_probs=13.4
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 22346766413567516789989998
Q gi|254780178|r 208 LDLKGYAIGGLAVGEPQEVMLHILSN 233 (378)
Q Consensus 208 ~~~~G~aIgGl~~ge~~~~~~~ii~~ 233 (378)
-++||+.|||.++. + + +.+|+..
T Consensus 227 ~~vDG~LVGgASl~-~-e-F~~Ii~~ 249 (251)
T 2vxn_A 227 PDINGFLVGGASLK-P-E-FRDIIDA 249 (251)
T ss_dssp TTCCEEEESGGGGS-T-T-HHHHHHT
T ss_pred CCCCEEEECHHHCC-H-H-HHHHHHH
T ss_conf 89896885215458-7-8-9999996
No 99
>1ney_A TIM, triosephosphate isomerase; yeast, DHAP, dihydroxyacetone phosphate, michaelis complex; HET: FTR 13P; 1.20A {Saccharomyces cerevisiae} SCOP: c.1.1.1 PDB: 1nf0_A* 1i45_A* 1ypi_A 2ypi_A 7tim_A* 3ypi_A*
Probab=26.30 E-value=27 Score=13.91 Aligned_cols=73 Identities=22% Similarity=0.403 Sum_probs=30.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-HHHHHHHHHCCCCCCCHHHHH
Q ss_conf 3322115899999998899999998851358886055402344436689999887642-223467664135675167899
Q gi|254780178|r 150 LALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKE-LDLKGYAIGGLAVGEPQEVML 228 (378)
Q Consensus 150 ~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~-~~~~G~aIgGl~~ge~~~~~~ 228 (378)
|...++.+.+++...--.+++.++........-..|+| |.+.++ -++++.+ .++||+.|||.++. + | +.
T Consensus 171 tG~~as~~~i~e~~~~Ir~~l~~~~~~~~~~~i~iLYG---GSV~~~----N~~~i~~~~~iDG~LVG~ASl~-~-e-F~ 240 (247)
T 1ney_A 171 TGLAATPEDAQDIHASIRKFLASKLGDKAASELRILYG---GSANGS----NAVTFKDKADVDGFLVGGASLK-P-E-FV 240 (247)
T ss_dssp TSCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCCEEEE---SSCCTT----TGGGGTTCTTCCEEEESGGGGS-T-H-HH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCCEEEC---CCCCHH----HHHHHHCCCCCCEEEECHHHCC-H-H-HH
T ss_conf 89889989999999999999987404101477618877---888977----9999956889995894037578-5-8-99
Q ss_pred HHHH
Q ss_conf 8999
Q gi|254780178|r 229 HILS 232 (378)
Q Consensus 229 ~ii~ 232 (378)
+|+.
T Consensus 241 ~Ii~ 244 (247)
T 1ney_A 241 DIIN 244 (247)
T ss_dssp HHHT
T ss_pred HHHH
T ss_conf 9984
No 100
>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomics, NPPSFA; 2.30A {Methanocaldococcus jannaschii DSM2661}
Probab=25.67 E-value=28 Score=13.83 Aligned_cols=50 Identities=30% Similarity=0.482 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHC--CCHHHHEEC-CCCHHHHHHHHHHHCCCC-------EEEECCEEECCCC
Q ss_conf 899899989850--770331002-541018999999853898-------3662000002332
Q gi|254780178|r 226 VMLHILSNVLPI--LPVERPHYL-MGVGTPDDILKSVSYGVD-------MFDCVMPTRAGRH 277 (378)
Q Consensus 226 ~~~~ii~~~~~~--LP~~kPr~l-~G~G~P~~i~~~v~~GvD-------lFD~~~ptr~Ar~ 277 (378)
..++++..+..+ ||. +.+- =|+.+|-|-.....+|+| +|.|.-|.+.|+.
T Consensus 227 ap~eLv~~v~~~GrLPV--VnFAAGGIATPADAALMMqLG~DGVFVGSGIFKS~dP~krA~A 286 (330)
T 2yzr_A 227 GLYEVLLEVKKLGRLPV--VNFAAGGVATPADAALMMQLGSDGVFVGSGIFKSENPLERARA 286 (330)
T ss_dssp HHHHHHHHHHHHTSCSS--EEEECSCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCE--EEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHH
T ss_conf 35899999998198753--6532578688788999985489859977541357998999999
No 101
>2nyb_A Superoxide dismutase [FE]; iron superoxide dismutase Q69E, fesod, oxidoreductase; 1.10A {Escherichia coli} SCOP: a.2.11.1 d.44.1.1 PDB: 2bkb_A 1isa_A 1isb_A 1isc_A 1za5_A 2w7w_A
Probab=25.03 E-value=29 Score=13.75 Aligned_cols=19 Identities=5% Similarity=0.163 Sum_probs=12.1
Q ss_pred EECCCCCCCCCCCHHHHHH
Q ss_conf 4106868568868899986
Q gi|254780178|r 34 MPVGTAGTVKAMYFDQVRD 52 (378)
Q Consensus 34 lpv~t~g~v~~lt~~~l~~ 52 (378)
+|+.-.+--|.++..+++.
T Consensus 7 LpY~~~~LeP~iS~~~~~~ 25 (192)
T 2nyb_A 7 LPYAKDALAPHISAETIEY 25 (192)
T ss_dssp CSSCTTTTTTTSCHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHH
T ss_conf 9898564667379999999
No 102
>1uer_A SOD, superoxide dismutase; metal-specific, cambialistic, oxidoreductase; 1.60A {Porphyromonas gingivalis} SCOP: a.2.11.1 d.44.1.1 PDB: 1qnn_A 1ues_A
Probab=24.87 E-value=29 Score=13.73 Aligned_cols=19 Identities=11% Similarity=0.135 Sum_probs=12.6
Q ss_pred EECCCCCCCCCCCHHHHHH
Q ss_conf 4106868568868899986
Q gi|254780178|r 34 MPVGTAGTVKAMYFDQVRD 52 (378)
Q Consensus 34 lpv~t~g~v~~lt~~~l~~ 52 (378)
+|+...+--|+++.++++.
T Consensus 8 LpY~~~~LeP~iS~~~l~~ 26 (191)
T 1uer_A 8 LPYAVDALAPVISKETVEF 26 (191)
T ss_dssp CSSCTTTTTTTTCHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHH
T ss_conf 9888452635059999999
No 103
>1kbl_A PPDK, pyruvate phosphate dikinase; transferase, phosphotransferase; 1.94A {Clostridium symbiosum} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1kc7_A* 1dik_A 1ggo_A 1jde_A 2dik_A 2r82_A 2fm4_A
Probab=24.71 E-value=29 Score=13.72 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=18.7
Q ss_pred EECCCCHHHHHHHHHHHCCCCEE
Q ss_conf 00254101899999985389836
Q gi|254780178|r 244 HYLMGVGTPDDILKSVSYGVDMF 266 (378)
Q Consensus 244 r~l~G~G~P~~i~~~v~~GvDlF 266 (378)
...+.+|+|+++..+.++|+|-+
T Consensus 534 ~i~~N~~~p~~a~~~~~~g~dGI 556 (873)
T 1kbl_A 534 KVRTNADTPEDTLNAVKLGAEGI 556 (873)
T ss_dssp EEEEECCSHHHHHHHHHTTCCSE
T ss_pred EEEECCCCHHHHHHHHHCCCCCC
T ss_conf 99985799999999986799743
No 104
>2i9e_A Triosephosphate isomerase; 2.00A {Tenebrio molitor}
Probab=24.62 E-value=29 Score=13.70 Aligned_cols=28 Identities=29% Similarity=0.786 Sum_probs=13.2
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCH
Q ss_conf 23467664135675167899899989850770
Q gi|254780178|r 209 DLKGYAIGGLAVGEPQEVMLHILSNVLPILPV 240 (378)
Q Consensus 209 ~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~ 240 (378)
++||+.|||-++. + + +.+|++ ....+|.
T Consensus 224 ~vDG~LVG~ASL~-~-e-F~~Ii~-~~~~~~~ 251 (259)
T 2i9e_A 224 DIDGFLVGGASLK-P-E-FVDIIN-ARQLVPR 251 (259)
T ss_dssp TCCEEEESGGGGS-T-H-HHHHHT-TTC----
T ss_pred CCCEEEEEHHHCC-H-H-HHHHHH-HHHHHHC
T ss_conf 9886896026579-8-9-999999-9986545
No 105
>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A
Probab=24.46 E-value=30 Score=13.68 Aligned_cols=56 Identities=14% Similarity=-0.077 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEE---CCCCHHH-HHHHHHHHCCCCEEE
Q ss_conf 8764222346766413567516789989998985077033100---2541018-999999853898366
Q gi|254780178|r 203 ERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHY---LMGVGTP-DDILKSVSYGVDMFD 267 (378)
Q Consensus 203 ~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~---l~G~G~P-~~i~~~v~~GvDlFD 267 (378)
+.-.+.+.|+.-+.|+. +.+++.++...+. .|.. +.|-.+| ...-.+.++|+.+.-
T Consensus 174 ~aY~~AGAD~if~~~~~---~~~~i~~~~~~~~------~Pl~~~~~~~~~~p~~s~~eL~~lGv~~v~ 233 (295)
T 1xg4_A 174 QAYVEAGAEMLFPEAIT---ELAMYRQFADAVQ------VPILANITEFGATPLFTTDELRSAHVAMAL 233 (295)
T ss_dssp HHHHHTTCSEEEETTCC---SHHHHHHHHHHHC------SCBEEECCSSSSSCCCCHHHHHHTTCSEEE
T ss_pred HHHHHHCCCEEEECCCC---CHHHHHHHHHHCC------CCEEEEECCCCCCCCCCHHHHHHCCCEEEE
T ss_conf 99998189589844788---6999999998559------986644568899876417799867901999
No 106
>3gwn_A Probable FAD-linked sulfhydryl oxidase R596; five helix bundle, homodimer, disulfide bond, flavoprotein, oxidoreductase; HET: FAD; 1.78A {Acanthamoeba polyphaga mimivirus}
Probab=24.40 E-value=10 Score=16.81 Aligned_cols=35 Identities=17% Similarity=0.232 Sum_probs=20.1
Q ss_pred CCCCHHHCCCCHHHHHHH--------HHCCCHHHHHHHHHHHH
Q ss_conf 669813368898999886--------85785089999999999
Q gi|254780178|r 304 ESHCSALRDYSRAYLHHL--------LRVNESLAGMILSWANL 338 (378)
Q Consensus 304 ~C~C~~C~~ytraYl~HL--------~~~~E~l~~~Ll~iHNl 338 (378)
-..|..|+.|-..|+.-. +.+++-+..=|..+||.
T Consensus 46 ~lPC~~C~~hf~~~l~~~~~~~~~~~~~sr~~l~~wl~~~HN~ 88 (114)
T 3gwn_A 46 VLPCRLCRESYKKFITTGKTALTNEVLRNRHTLTKWFYDVHNA 88 (114)
T ss_dssp HCSSHHHHHHHHHHTTSGGGCCCGGGGSSHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 8686999999999999753334775568899999999999999
No 107
>1r2r_A TIM, triosephosphate isomerase; closed loop conformation in the ligand-free state, conformational heterogeneity, TIM-barrel; 1.50A {Oryctolagus cuniculus} SCOP: c.1.1.1 PDB: 1r2s_A 1r2t_A 2jk2_A 1wyi_A 1hti_A 2vom_A 1tph_1* 8tim_A 1sw3_A 1spq_A 1tpb_1* 1tpw_A* 1sw7_A 1tpu_A* 1tpc_1* 1ssd_A 1ssg_A 1sw0_A 1sq7_A 1tpv_A* ...
Probab=24.28 E-value=30 Score=13.66 Aligned_cols=22 Identities=32% Similarity=0.830 Sum_probs=10.5
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 2234676641356751678998999
Q gi|254780178|r 208 LDLKGYAIGGLAVGEPQEVMLHILS 232 (378)
Q Consensus 208 ~~~~G~aIgGl~~ge~~~~~~~ii~ 232 (378)
.++||..|||.++. + + +.+|+.
T Consensus 224 ~~iDG~LVG~ASl~-~-e-F~~Ii~ 245 (248)
T 1r2r_A 224 PDVDGFLVGGASLK-P-E-FVDIIN 245 (248)
T ss_dssp TTCCEEEESGGGGS-T-H-HHHHHT
T ss_pred CCCCEEEEEHHHCC-H-H-HHHHHH
T ss_conf 89897981078678-6-8-999997
No 108
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, quinolinic acid; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=24.25 E-value=30 Score=13.66 Aligned_cols=31 Identities=19% Similarity=0.063 Sum_probs=18.3
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEECCEEECCC
Q ss_conf 2541018999999853898366200000233
Q gi|254780178|r 246 LMGVGTPDDILKSVSYGVDMFDCVMPTRAGR 276 (378)
Q Consensus 246 l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar 276 (378)
..|-=++..|..-...|||.|....+|..|+
T Consensus 246 aSGGI~~~ni~~ya~~GVD~Is~g~lt~~a~ 276 (284)
T 1qpo_A 246 SSGGLSLQTAATYAETGVDYLAVGALTHSVR 276 (284)
T ss_dssp EESSCCTTTHHHHHHTTCSEEECGGGTSSBC
T ss_pred EECCCCHHHHHHHHHCCCCEEECCHHHCCCC
T ss_conf 9899989999999866989998396755998
No 109
>3gwl_A P14, FAD-linked sulfhydryl oxidase; homodimer, five-helix bundle, cytoplasm, disulfide bond, flavoprotein, late protein; HET: FAD; 2.10A {African swine fever virus BA71V}
Probab=23.60 E-value=15 Score=15.74 Aligned_cols=34 Identities=15% Similarity=0.221 Sum_probs=18.6
Q ss_pred CCCCHHHCCCCHHHHHHHH---HCCCHHHHHHHHHHH
Q ss_conf 6698133688989998868---578508999999999
Q gi|254780178|r 304 ESHCSALRDYSRAYLHHLL---RVNESLAGMILSWAN 337 (378)
Q Consensus 304 ~C~C~~C~~ytraYl~HL~---~~~E~l~~~Ll~iHN 337 (378)
-..|..|+.|-..|+.... .+++.+..=+..+||
T Consensus 44 ~lPC~~C~~h~~~~l~~~p~~l~sr~~l~~wl~~~HN 80 (106)
T 3gwl_A 44 SLPCTRCQHHAFSYLTKNPLTLNNSEDFQYWTFAFHN 80 (106)
T ss_dssp HCSCHHHHHHHHHHHHHSCCCCSSHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 4881999999999998788667889999999999999
No 110
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*
Probab=23.41 E-value=27 Score=13.92 Aligned_cols=74 Identities=22% Similarity=0.282 Sum_probs=42.8
Q ss_pred HHEECC-CCHHHHHHHHHHHCCCCEEEECCEEECC--CCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHCCCCHHHH
Q ss_conf 310025-4101899999985389836620000023--3200245621002101232236885598669813368898999
Q gi|254780178|r 242 RPHYLM-GVGTPDDILKSVSYGVDMFDCVMPTRAG--RHGLAFTRFGKINLRNARHIDDMRPLDAESHCSALRDYSRAYL 318 (378)
Q Consensus 242 kPr~l~-G~G~P~~i~~~v~~GvDlFD~~~ptr~A--r~G~~~t~~g~i~l~~~~~~~d~~pi~~~C~C~~C~~ytraYl 318 (378)
.|...- |+-++.||+.|++||.|..=-.-|...| -.|. .|...+= ..+..+++-...-|.|...+.-++.+|
T Consensus 279 ~~iiadGGIR~G~DI~KALALGAd~Vgigrp~L~al~~~G~----egv~~~i-~~l~~EL~~~M~l~G~~~i~dL~~~~l 353 (380)
T 1p4c_A 279 KPVLIDSGFRRGSDIVKALALGAEAVLLGRATLYGLAARGE----TGVDEVL-TLLKADIDRTLAQIGCPDITSLSPDYL 353 (380)
T ss_dssp SCEEECSSCCSHHHHHHHHHTTCSCEEESHHHHHHHHHHHH----HHHHHHH-HHHHHHHHHHHHHHTCCBGGGCCGGGE
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCH----HHHHHHH-HHHHHHHHHHHHHHCCCCHHHCCHHHE
T ss_conf 61664587564889999998599989887899999884559----9999999-999999999999968899678599884
Q ss_pred HH
Q ss_conf 88
Q gi|254780178|r 319 HH 320 (378)
Q Consensus 319 ~H 320 (378)
++
T Consensus 354 ~~ 355 (380)
T 1p4c_A 354 QN 355 (380)
T ss_dssp EE
T ss_pred EC
T ss_conf 15
No 111
>1tre_A Triosephosphate isomerase; intramolecular oxidoreductase; 2.60A {Escherichia coli} SCOP: c.1.1.1 PDB: 1tmh_A
Probab=23.38 E-value=31 Score=13.55 Aligned_cols=42 Identities=24% Similarity=0.441 Sum_probs=23.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHH-HHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 0554023444366899998876-42223467664135675167899899989
Q gi|254780178|r 184 ALFGIVQGGDNINLRSFSAERL-KELDLKGYAIGGLAVGEPQEVMLHILSNV 234 (378)
Q Consensus 184 ~lfgiVqGG~~~dLR~~Sa~~l-~~~~~~G~aIgGl~~ge~~~~~~~ii~~~ 234 (378)
.|+| |++.++- +.++ ...++||+.|||-++ +.+.+.+|+..+
T Consensus 207 ilYG---GSV~~~N----~~~i~~~~~vDG~LVG~ASL--~~~~F~~Ii~~~ 249 (255)
T 1tre_A 207 IQYG---GSVNASN----AAELFAQPDIDGALVGGASL--KADAFAVIVKAA 249 (255)
T ss_dssp EEEC---SCCCTTT----HHHHHTSTTCCEEEESGGGG--CHHHHHHHHHHH
T ss_pred EEEC---CCCCHHH----HHHHHCCCCCCEEEECHHHC--CHHHHHHHHHHH
T ss_conf 9974---8678869----99996677998699535446--888999999999
No 112
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*
Probab=23.26 E-value=13 Score=16.07 Aligned_cols=32 Identities=9% Similarity=0.116 Sum_probs=15.9
Q ss_pred HHHCCCHHHHEECCCCHHHHHHHHHHHCCCCEE
Q ss_conf 985077033100254101899999985389836
Q gi|254780178|r 234 VLPILPVERPHYLMGVGTPDDILKSVSYGVDMF 266 (378)
Q Consensus 234 ~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlF 266 (378)
.....|+.++.. .-+-++++...++..|+|+.
T Consensus 192 ~~~~~~~~~~ie-VEv~~~~ea~~a~~~g~d~i 223 (294)
T 3c2e_A 192 ARAVCGFAVKIE-VECLSEDEATEAIEAGADVI 223 (294)
T ss_dssp HHHHHCTTSCEE-EECSSSHHHHHHHHHTCSEE
T ss_pred HHHHCCCCEEEE-ECCCCHHHHHHHHHCCCCEE
T ss_conf 977414764999-62545888999997599966
No 113
>1tb3_A Hydroxyacid oxidase 3; flavoprotein, oxidoreductase; HET: FMN; 2.30A {Rattus norvegicus} SCOP: c.1.4.1
Probab=22.62 E-value=32 Score=13.45 Aligned_cols=45 Identities=27% Similarity=0.323 Sum_probs=28.9
Q ss_pred HHHHHHCCCHHHHEECC-CCHHHHHHHHHHHCCCCEEEECCEEECC
Q ss_conf 99898507703310025-4101899999985389836620000023
Q gi|254780178|r 231 LSNVLPILPVERPHYLM-GVGTPDDILKSVSYGVDMFDCVMPTRAG 275 (378)
Q Consensus 231 i~~~~~~LP~~kPr~l~-G~G~P~~i~~~v~~GvDlFD~~~ptr~A 275 (378)
+..+.+....+-|.++- |+-+..||+.+++||.|..=..-|..+|
T Consensus 262 L~ei~~~~~~~~~ii~dGGIR~G~Dv~KALALGA~aV~igrp~L~a 307 (352)
T 1tb3_A 262 LREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILWG 307 (352)
T ss_dssp HHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSCEEESHHHHHH
T ss_pred HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECHHHHHH
T ss_conf 7999865179846885487585789999998589988876899999
No 114
>2bg5_A Enzyme I, phosphoenolpyruvate-protein kinase; phosphotransferase system, thermophilic, bacteria, PEP-utilising enzyme; 1.82A {Thermoanaerobacter tengcongensis}
Probab=22.34 E-value=32 Score=13.41 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=28.6
Q ss_pred CHHHHEECCC--CHHHHHHHHHHHCCCCEEEECCEEECCC
Q ss_conf 7033100254--1018999999853898366200000233
Q gi|254780178|r 239 PVERPHYLMG--VGTPDDILKSVSYGVDMFDCVMPTRAGR 276 (378)
Q Consensus 239 P~~kPr~l~G--~G~P~~i~~~v~~GvDlFD~~~ptr~Ar 276 (378)
..++|.-+.| +|+|..+..++.+|+|-|= +.|.+...
T Consensus 245 ~~~~~v~iCGE~a~dp~~~~~L~~lGi~~lS-~sp~~i~~ 283 (324)
T 2bg5_A 245 KEGKFAAMCGEMAGDPLAAVILLGLGLDEFS-MSATSIPE 283 (324)
T ss_dssp HTTCEEEECSGGGGCHHHHHHHHHHTCCEEE-ECGGGHHH
T ss_pred HCCCCEEECCCCCCCHHHHHHHHHCCCCEEE-ECHHHHHH
T ss_conf 2588558446765786899999984998899-88799999
No 115
>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A
Probab=22.02 E-value=33 Score=13.37 Aligned_cols=51 Identities=22% Similarity=0.211 Sum_probs=26.4
Q ss_pred ECCCCCCEEEECHHHHHHHHHHC---CCCEEEEEHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 01445415871299999998732---89779960121332211589999999889
Q gi|254780178|r 116 RSHIDGSLYRVSPEESVHIQNLL---GSDIQMQLDECLALPAEDKELKRAMELSL 167 (378)
Q Consensus 116 ~s~~dG~~~~ltpe~~i~~q~~l---g~DI~~~LD~~~~~~~~~k~~~~sv~rT~ 167 (378)
-|..||++ +++++..++-.+.+ |+||+=.=.+-|.+.+..--.++-.+|..
T Consensus 26 DSFsdgg~-~~~~~~a~~~a~~mi~~GAdiIDIGgeSTrPga~~is~eeE~~Rl~ 79 (282)
T 1aj0_A 26 DSFSDGGT-HNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELQRVI 79 (282)
T ss_dssp TTSCCCCC-CTHHHHHHHHHHHHHHHTCSEEEEESSCCSTTCCCCCHHHHHHHHH
T ss_pred CCCCCCCC-CCCHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCCHHHHHHHHH
T ss_conf 98988875-7899999999999998799699879734799891278899998878
No 116
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose phosphate pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=21.89 E-value=33 Score=13.35 Aligned_cols=128 Identities=14% Similarity=0.097 Sum_probs=67.6
Q ss_pred EEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE-CCCCCCHHHHHHHH
Q ss_conf 87129999999873289779960121332211589999999889999999885135888605540-23444366899998
Q gi|254780178|r 124 YRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGI-VQGGDNINLRSFSA 202 (378)
Q Consensus 124 ~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgi-VqGG~~~dLR~~Sa 202 (378)
..-.|+.+++--...|+|++..--++..... ..++.++.++ . ...+|+ +..+...+.-....
T Consensus 76 Mv~~P~~~i~~~~~~g~d~i~~H~E~~~~~~--------~~~~i~~ik~-------~--g~k~Glal~p~T~~~~i~~~l 138 (230)
T 1rpx_A 76 MIVEPDQRVPDFIKAGADIVSVHCEQSSTIH--------LHRTINQIKS-------L--GAKAGVVLNPGTPLTAIEYVL 138 (230)
T ss_dssp ESSSHHHHHHHHHHTTCSEEEEECSTTTCSC--------HHHHHHHHHH-------T--TSEEEEEECTTCCGGGGTTTT
T ss_pred EEECHHHHHHHHHHHCCCEEEEECCCCCCCC--------HHHHHHHHHH-------C--CCEEEEEECCCCCHHHHHHHH
T ss_conf 9965787699998718953675133344226--------9999999998-------7--986999968999989999998
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHH---EECCCCHHHHHHHHHHHCCCCEEEEC
Q ss_conf 87642223467664135675167899899989850770331---00254101899999985389836620
Q gi|254780178|r 203 ERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERP---HYLMGVGTPDDILKSVSYGVDMFDCV 269 (378)
Q Consensus 203 ~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kP---r~l~G~G~P~~i~~~v~~GvDlFD~~ 269 (378)
+.+-..-+.+.- -|++...-.+...+-+......++...+ ..+=|.=+.+.+..+.+.|+|.|-+-
T Consensus 139 ~~vD~VlvMtV~-PGf~GQ~f~~~~l~kI~~~~~~~~~~~~~~~I~VDGGIn~~~i~~l~~~Gad~~V~G 207 (230)
T 1rpx_A 139 DAVDLVLIMSVN-PGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPKNAYKVIEAGANALVAG 207 (230)
T ss_dssp TTCSEEEEESSC-TTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCCTTTHHHHHHHTCCEEEES
T ss_pred HHCCEEEEEEEC-CCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEEC
T ss_conf 657989998876-898754446889999999999998659935899988878899999998699999978
No 117
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus}
Probab=21.81 E-value=33 Score=13.35 Aligned_cols=20 Identities=25% Similarity=0.300 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHCCCCEEEEC
Q ss_conf 01899999985389836620
Q gi|254780178|r 250 GTPDDILKSVSYGVDMFDCV 269 (378)
Q Consensus 250 G~P~~i~~~v~~GvDlFD~~ 269 (378)
++...+-.....|+|.+...
T Consensus 240 ~~~~~~~~~~~~~~d~~s~d 259 (338)
T 2eja_A 240 GSSSFIDLAVDYRADALSVD 259 (338)
T ss_dssp SHHHHHHHHTTSCCSEEECC
T ss_pred CCHHHHHHHHCCCCCCCCCC
T ss_conf 60234444302676630456
No 118
>2hj3_A Sulfhydryl oxidase ERV1P; four-helix bundle, flavin adenine dinucleotide, oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana}
Probab=21.58 E-value=15 Score=15.68 Aligned_cols=56 Identities=14% Similarity=0.225 Sum_probs=26.4
Q ss_pred CCCCHHHCCCCHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 6698133688989998868---578508999999999999999999999999859989999999998532
Q gi|254780178|r 304 ESHCSALRDYSRAYLHHLL---RVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQENWKK 370 (378)
Q Consensus 304 ~C~C~~C~~ytraYl~HL~---~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~~~~~~~ 370 (378)
-+.|..|+.|-..|+.... ++++.+..-|..+|| .+.+....-.|. .+++.++|.+
T Consensus 50 ~lPC~~Cr~hf~~~l~~~p~~~~sr~~l~~wl~~~HN---------~VN~rLgKp~~~--~~~~~~~y~~ 108 (125)
T 2hj3_A 50 MYPCRECADHFKEILRSNPAQAGSQEEFSQWLCHVHN---------TVNRSLGKLVFP--CERVDARWGK 108 (125)
T ss_dssp HCSSHHHHHHHHHHHHHSCCCCSSHHHHHHHHHHHHH---------HHHHHTTCCCCC--TTSHHHHCC-
T ss_pred HCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH---------HHHHHCCCCCCC--HHHHHHHHCC
T ss_conf 8774889999999998785436899999999999999---------999985999878--8999988655
No 119
>1my6_A Iron (III) superoxide dismutase; iron speroxide dismutase, thermophIle, reactive oxygen species, cyanobacteria, SOD, fesod; 1.60A {Thermosynechococcus elongatus} SCOP: a.2.11.1 d.44.1.1
Probab=21.41 E-value=34 Score=13.29 Aligned_cols=19 Identities=11% Similarity=0.072 Sum_probs=11.1
Q ss_pred EECCCCCCCCC-CCHHHHHH
Q ss_conf 41068685688-68899986
Q gi|254780178|r 34 MPVGTAGTVKA-MYFDQVRD 52 (378)
Q Consensus 34 lpv~t~g~v~~-lt~~~l~~ 52 (378)
||+.-.+--|. ++.++|+.
T Consensus 7 Lpy~y~aLeP~~iS~~t~~~ 26 (199)
T 1my6_A 7 LPFDPGALEPYGMSAKTLEF 26 (199)
T ss_dssp CSSCTTTTGGGTCCHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHH
T ss_conf 99883437856719999999
No 120
>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida KT2440} PDB: 1xto_A
Probab=21.12 E-value=21 Score=14.73 Aligned_cols=10 Identities=0% Similarity=-0.024 Sum_probs=6.7
Q ss_pred CCEEEEEEEC
Q ss_conf 7049999764
Q gi|254780178|r 4 NFHFNLKAVS 13 (378)
Q Consensus 4 ~~~F~i~~~~ 13 (378)
||+.+|+-+-
T Consensus 2 ~M~i~~LGtg 11 (321)
T 3jxp_A 2 MMYIQVLGSA 11 (321)
T ss_dssp CEEEEEEECB
T ss_pred EEEEEEEEEE
T ss_conf 6999999880
No 121
>3mbg_A FAD-linked sulfhydryl oxidase ALR; flavin, flavoprotein, GFER; HET: FAD; 1.85A {Homo sapiens}
Probab=20.92 E-value=18 Score=15.16 Aligned_cols=56 Identities=16% Similarity=0.256 Sum_probs=26.4
Q ss_pred CCCCHHHCCCCHHHHHHH---HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 669813368898999886---8578508999999999999999999999999859989999999998532
Q gi|254780178|r 304 ESHCSALRDYSRAYLHHL---LRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQENWKK 370 (378)
Q Consensus 304 ~C~C~~C~~ytraYl~HL---~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~~~~~~~ 370 (378)
-+.|..|+.|-..||.-. +.+++.+..-|..+|| .+.+.+..-.|.- ++..++|+.
T Consensus 73 ~LPC~~Cr~Hf~~~l~~~p~~l~SR~~l~~Wl~~~HN---------~VN~rLgKp~fs~--~~~~~~Y~~ 131 (139)
T 3mbg_A 73 FYPCEECAEDLRKRLARNHPDTRTRAAFTQWLCHLHN---------EVNRKLGKPDFDC--SKVDERWRD 131 (139)
T ss_dssp HCSCHHHHHHHHHHHHHSCCCCSSHHHHHHHHHHHHH---------HHHHHTTCCCCCG--GGHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH---------HHHHHCCCCCCCH--HHHHHHHHC
T ss_conf 0898668888999997389777999999999999999---------9999839998789--999999963
No 122
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=20.89 E-value=35 Score=13.22 Aligned_cols=39 Identities=18% Similarity=0.130 Sum_probs=21.1
Q ss_pred CCHHHHEECCCCHHHHHHHHHHHCCCCEEEECCEEECCC
Q ss_conf 770331002541018999999853898366200000233
Q gi|254780178|r 238 LPVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGR 276 (378)
Q Consensus 238 LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar 276 (378)
+.+.-..-..|-=++.+|....+.|||.+.....|..|+
T Consensus 249 ~~~~v~ieaSGGI~~~ni~~ya~~GVD~Is~g~lt~~a~ 287 (296)
T 1qap_A 249 VNGQARLEVSGNVTAETLREFAETGVDFISVGALTKHVR 287 (296)
T ss_dssp TCTTCCEEECCCSCHHHHHHHHHTTCSEEECSHHHHEEE
T ss_pred HCCCEEEEEECCCCHHHHHHHHHCCCCEEECCHHHCCCC
T ss_conf 579679999799999999999976989998285546996
No 123
>2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, structural genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A
Probab=20.58 E-value=35 Score=13.18 Aligned_cols=37 Identities=19% Similarity=0.114 Sum_probs=30.9
Q ss_pred CHHHHEECCCCHHHHHHHHHHHCCCCEEEECCEEECC
Q ss_conf 7033100254101899999985389836620000023
Q gi|254780178|r 239 PVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAG 275 (378)
Q Consensus 239 P~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~A 275 (378)
....+.|+..+-+|.++..++.+|||.+-+.+|.+..
T Consensus 239 ~~G~~V~vwTVn~~~~~~~l~~~GVdgIiTD~P~~~~ 275 (287)
T 2oog_A 239 DLGFIVHPYTVNEKADMLRLNKYGVDGVFTNFADKYK 275 (287)
T ss_dssp HTTCEECCBCCCSHHHHHHHHHHTCSEEEESCHHHHH
T ss_pred HCCCEEEEECCCCHHHHHHHHHCCCCEEEECCHHHHH
T ss_conf 8799999980899999999986699999988699999
No 124
>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1
Probab=20.22 E-value=36 Score=13.13 Aligned_cols=51 Identities=16% Similarity=0.044 Sum_probs=28.4
Q ss_pred ECCCCCCEEEECHHHHHHHHH---HCCCCEEEEEHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 014454158712999999987---3289779960121332211589999999889
Q gi|254780178|r 116 RSHIDGSLYRVSPEESVHIQN---LLGSDIQMQLDECLALPAEDKELKRAMELSL 167 (378)
Q Consensus 116 ~s~~dG~~~~ltpe~~i~~q~---~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~ 167 (378)
-|.+||++ +++++..++-.+ .-|+||+=.=.+-|.+.+..-..++-.+|..
T Consensus 17 DSFsdgg~-~~~~~~a~~~a~~~i~~GAdiIDIG~eSTrPg~~~i~~eeE~~Rl~ 70 (280)
T 1eye_A 17 DSFSDGGC-YLDLDDAVKHGLAMAAAGAGIVDVGGESSRPGATRVDPAVETSRVI 70 (280)
T ss_dssp CTTCSSCC-CCSHHHHHHHHHHHHHTTCSEEEEECC--------------HHHHH
T ss_pred CCCCCCCC-CCCHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCCHHHHHHCCC
T ss_conf 99998883-8899999999999998899499989620799895269999863246
Done!