HHSEARCH alignment of GI: 254780178 and SCOP domain: d1iq8a1

Alignment
>d1iq8a1 c.1.20.1 (A:6-360) Archaeosine tRNA-guanine transglycosylase, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=100.00  E-value=0  Score=755.05  Aligned_cols=329  Identities=24%  Similarity=0.348  Sum_probs=309.3

Q ss_pred             CCCEEEEEEECCCCEEEEEEECCEEEECCCEEECCCCCCCCCCCHHHHHHCCCCEEEEEHHHHHHCCCHHHHHHCCCCHH
Q ss_conf             87049999764993279998788754058574106868568868899986099899932266573876899865274201
Q gi|254780178|r    3 KNFHFNLKAVSGSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNAYHLMLRPGAERIARLGGLHK   82 (378)
Q Consensus         3 ~~~~F~i~~~~~~aR~G~L~t~~g~i~TP~flpv~t~g~v~~lt~~~l~~~g~~~il~Ntyhl~~~pg~~~i~~~gGlh~   82 (378)
                      +||+|+|+++|++||+|+|.|+||+|+||+||||+|+|+| +++|++|+++|+|++|+|||||+++|+.+.++..||||+
T Consensus         1 ~m~~F~i~~~d~~AR~G~l~~~~g~i~TP~fmpv~t~~~v-~~~p~~l~~~g~~iil~NtYhl~~~p~~~~~~~~gGLh~   79 (355)
T d1iq8a1           1 KMLKFEIKARDGAGRIGKLEVNGKKIETPAIMPVVNPKQM-VVEPKELEKMGFEIIITNSYIIYKDEELRRKALELGIHR   79 (355)
T ss_dssp             CCEEEEEEEEETTEEEEEEEETTEEEEESEEEEBCCSSSC-SSCHHHHHHTTCCEEEEEHHHHHHCHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEEEECCCCEEEEEECCEEEECCCEEEEECCCCC-CCCHHHHHHHCCCEEECCCCCCCCCCCCEEEECCCCHHH
T ss_conf             9568999861177224899969966608915565458740-148999998389989211130678987344312477044


Q ss_pred             HCCCCCCEEECCCCCCCCHHHHCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHH
Q ss_conf             10157722411454321012210223333102101445415871299999998732897799601213322115899999
Q gi|254780178|r   83 FIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRA  162 (378)
Q Consensus        83 fl~~~~~ilTDSGgfQv~sl~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~s  162 (378)
                      ||+|++||||||||||++|+++.                   .++||++|++|+.+||||+|+||+|+++++++++++++
T Consensus        80 F~~w~~~ilTDSGgfQv~sl~~~-------------------~~~~e~~i~~q~~lgsDI~m~lD~~~~~~~~~~~~~~s  140 (355)
T d1iq8a1          80 MLDYNGIIEVDSGSFQLMKYGSI-------------------EVSNREIIEFQHRIGVDIGTFLDIPTPPDAPREQAVKE  140 (355)
T ss_dssp             HHTCCSEEEEECSTTHHHHSSCC-------------------SSCHHHHHHHHHHTTCSBBCCCCCCCCTTCCHHHHHHH
T ss_pred             HHCCCCCEECCCCCCEEECCCHH-------------------HHHHHHHHEECCCCCCEEEEEECCCCCCCCCHHHHHHH
T ss_conf             30278962305566312112001-------------------12445662012045761798403467877779999999


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH---HHHHHHHHCCC
Q ss_conf             998899999998851358886055402344436689999887642223467664135675167899---89998985077
Q gi|254780178|r  163 MELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVML---HILSNVLPILP  239 (378)
Q Consensus       163 v~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~---~ii~~~~~~LP  239 (378)
                      ++||.+|+++|...    ..+.+|||||||.++|||++|++++.+++|+||+|||++.+++.+++.   +++..+.+.||
T Consensus       141 ~~rt~~~~~~~~~~----~~~~~~givqGG~~~dLR~~sa~~l~~~~~dG~aiGG~~~~~~~~~~~~~~~~i~~~~~~Lp  216 (355)
T d1iq8a1         141 LEITLSRAREAEEI----KEIPMNATIQGSTYTDLRRYAARRLSSMNFEIHPIGGVVPLLESYRFRDVVDIVISSKMALR  216 (355)
T ss_dssp             HHHHHHHHHHHHHH----CCSCBBCCBCCTTCHHHHHHHHHHHHHSCCSBEEECSCHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHH----HHCCCCCEECCCCCCCHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf             99999988887653----20564200012257317699986654178103201166765204789999998864101486


Q ss_pred             HHHHEECCCCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHCCCCHHHHH
Q ss_conf             03310025410189999998538983662000002332002456210021012322368855986698133688989998
Q gi|254780178|r  240 VERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDAESHCSALRDYSRAYLH  319 (378)
Q Consensus       240 ~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t~~g~i~l~~~~~~~d~~pi~~~C~C~~C~~ytraYl~  319 (378)
                      ++|||||||+|+|.+|+.+|++|||||||++|+|+||+|+++|++|.+++++..|.        +|+||+|++|||||||
T Consensus       217 ~~kPrylmGvG~P~di~~~v~~GiD~FD~~~p~r~ar~g~~~t~~g~~~l~~~d~~--------pC~C~~C~~~srayl~  288 (355)
T d1iq8a1         217 PDRPVHLFGAGHPIVFALAVAMGVDLFDSASYALYAKDDRYMTPEGTKRLDELDYF--------PCSCPVCSKYTPQELR  288 (355)
T ss_dssp             TTSCEEETTCCCGGGHHHHHHTTCCEEEESHHHHHHHTTEEEETTEEEEGGGCSSC--------CCCSTTTTTCCHHHHT
T ss_pred             CCCCEEECCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCEECCCCCCC--------CCCCCCCCCCCHHHHH
T ss_conf             33644413788756799999855896520588887640332157885235411013--------4578521405899999


Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             86857850899999999999999999999999985998999999999
Q gi|254780178|r  320 HLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQE  366 (378)
Q Consensus       320 HL~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~~~  366 (378)
                      ||++++|+   +||++|||++|.+||++||+||++|+|++|++++..
T Consensus       289 HL~~~~e~---~LltiHNl~~~~~l~~~iR~aI~~g~f~~~~e~~~~  332 (355)
T d1iq8a1         289 EMPKEERT---RLLALHNLWVIKEEIKRVKQAIKEGELWRLVDERAR  332 (355)
T ss_dssp             TSCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred             HHHHCCHH---HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             76346488---999999999999999999999985999999999998


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: tRNA-guanine transglycosylase
family: tRNA-guanine transglycosylase
domain: Archaeosine tRNA-guanine transglycosylase, N-terminal domain
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]