RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780178|ref|YP_003064591.1| queuine
tRNA-ribosyltransferase [Candidatus Liberibacter asiaticus str. psy62]
(378 letters)
>gnl|CDD|30691 COG0343, Tgt, Queuine/archaeosine tRNA-ribosyltransferase
[Translation, ribosomal structure and biogenesis].
Length = 372
Score = 495 bits (1276), Expect = e-141
Identities = 204/369 (55%), Positives = 255/369 (69%)
Query: 7 FNLKAVSGSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNAYHLM 66
F + A G AR+G + TP GVI+TPAFMPVGT GTVK M +++++LGA +IL N YHL
Sbjct: 1 FEILAKDGGARVGRLETPHGVIETPAFMPVGTNGTVKGMTPEELKELGAQIILTNTYHLY 60
Query: 67 LRPGAERIARLGGLHKFIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLYRV 126
LRPG E +A LGGLHKF+ W PILTDSGGFQV SL L I E+GV F+SHIDGS +
Sbjct: 61 LRPGLEIVALLGGLHKFMGWDGPILTDSGGFQVFSLGDLRKITEEGVTFKSHIDGSKVFL 120
Query: 127 SPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALF 186
+PEES+ IQ LGSDI M LDEC PA+ + ++++E +LRWAERSL A +ALF
Sbjct: 121 TPEESMEIQKDLGSDIIMILDECTPPPADREYAEKSVERTLRWAERSLEAHKRLNDQALF 180
Query: 187 GIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYL 246
GIVQGG +LR SAE L ELD GYAIGGL+VGEP+E M+ IL P+LP ++P YL
Sbjct: 181 GIVQGGTYEDLRRRSAEELNELDFDGYAIGGLSVGEPKEDMVRILEATKPLLPEDKPRYL 240
Query: 247 MGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDAESH 306
MGVG P+DI+++V+ GVDMFDCVMPTR R+G TR G++N+RNA+ +D RPLD
Sbjct: 241 MGVGHPEDIVEAVALGVDMFDCVMPTRYARNGRLLTRDGRVNIRNAKLAEDTRPLDEPCS 300
Query: 307 CSALRDYSRAYLHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQE 366
C R+YSRAYL HL R NE L +L+ NL +Y LMKEIR AI E F++F + E
Sbjct: 301 CPTCRNYSRAYLRHLRRANEELGARLLTIHNLYFYLRLMKEIRQAIKEGRFLEFVEEFAE 360
Query: 367 NWKKGDIPP 375
+
Sbjct: 361 KHPRLLPAY 369
>gnl|CDD|39111 KOG3908, KOG3908, KOG3908, Queuine-tRNA ribosyltransferase [RNA
processing and modification].
Length = 396
Score = 339 bits (870), Expect = 9e-94
Identities = 147/355 (41%), Positives = 214/355 (60%), Gaps = 1/355 (0%)
Query: 16 ARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNAYHLMLRPGAERIA 75
AR+G + P ++TP FMPVGT GT+K + +Q+ +LG ++LGN YHL LRPG E +
Sbjct: 21 ARVGTLELPHSSVETPVFMPVGTQGTMKGIVPEQLDELGCRILLGNTYHLGLRPGHELLK 80
Query: 76 RLGGLHKFIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQ 135
+ GGLHKF+ W + ILTDSGGFQ++SL KL ++ E GVRFRS DG ++PE+S+ IQ
Sbjct: 81 KAGGLHKFMNWNRNILTDSGGFQMVSLLKLATVTEDGVRFRSPHDGEDMLLTPEKSIEIQ 140
Query: 136 NLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNI 195
N LG+DI MQLD+ + ++ AM S+RW +R ++A + LF I+QGG +
Sbjct: 141 NALGADIMMQLDDVVHTLTTGPRVEEAMYRSIRWLDRCIMAHNRDDEQNLFPIIQGGLDE 200
Query: 196 NLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGVGTPDDI 255
LR+ + + + G AIGGL+ GE + +++ LP ++P YLMGVG +D+
Sbjct: 201 GLRAECIAEMLKRSVPGIAIGGLSGGEEKSEFWRMVAFCTSSLPPDKPRYLMGVGYAEDL 260
Query: 256 LKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDAESHCSALRDYSR 315
+ V+ G DMFDCV PTR R G A G + LR ++ D P+D C + Y+R
Sbjct: 261 VVCVALGSDMFDCVYPTRTARFGKALVDSGDLQLRQKKYKSDFGPIDETCGCPTCKKYTR 320
Query: 316 AYLHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQENWKK 370
AYLH L+ E++ +L+ N+AY LM+++R +I ED F F + K
Sbjct: 321 AYLHALVG-KETVGCHLLTIHNIAYQLQLMRDVRESIQEDRFPQFVKNFMASRFK 374
>gnl|CDD|145056 pfam01702, TGT, Queuine tRNA-ribosyltransferase. This is a family
of queuine tRNA-ribosyltransferases EC:2.4.2.29, also
known as tRNA-guanine transglycosylase and guanine
insertion enzyme. Queuine tRNA-ribosyltransferase
modifies tRNAs for asparagine, aspartic acid, histidine
and tyrosine with queuine. It catalyses the exchange of
guanine-34 at the wobble position with
7-aminomethyl-7-deazaguanine, and the addition of a
cyclopentenediol moiety to
7-aminomethyl-7-deazaguanine-34 tRNA; giving a
hypermodified base queuine in the wobble position. The
aligned region contains a zinc binding motif
C-x-C-x2-C-x29-H, and important tRNA and
7-aminomethyl-7deazaguanine binding residues.
Length = 238
Score = 321 bits (825), Expect = 2e-88
Identities = 131/233 (56%), Positives = 162/233 (69%)
Query: 129 EESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGI 188
EES+ IQN LGSDI M LDEC PA + ++++E +LRWA+R L A + G+ALFGI
Sbjct: 1 EESIEIQNKLGSDIIMPLDECTPYPASRERAEKSVERTLRWADRCLEAHKEKSGQALFGI 60
Query: 189 VQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMG 248
VQGG +LR SAE L ELD GYAIGGL+VGE +E ML ++ V P+LP ++P YLMG
Sbjct: 61 VQGGLYEDLREESAEELAELDFDGYAIGGLSVGEEKEEMLELVDAVTPLLPEDKPRYLMG 120
Query: 249 VGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDAESHCS 308
VGTP+DIL++V+ GVDMFDCV PTR R+G A T G INL+NAR+ D RPLD C
Sbjct: 121 VGTPEDILEAVALGVDMFDCVFPTRYARNGRALTFDGTINLKNARYKLDFRPLDPPCDCY 180
Query: 309 ALRDYSRAYLHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFA 361
R+YSRAYLHHLL+ E L +L+ NL YY LM+EIR AI E F +F
Sbjct: 181 TCRNYSRAYLHHLLKAKEMLGSRLLTIHNLHYYLRLMREIREAIEEGTFEEFV 233
>gnl|CDD|39112 KOG3909, KOG3909, KOG3909, Queuine-tRNA ribosyltransferase [RNA
processing and modification].
Length = 414
Score = 109 bits (273), Expect = 1e-24
Identities = 88/384 (22%), Positives = 154/384 (40%), Gaps = 50/384 (13%)
Query: 7 FNLKAVSGSARLGEIITPRG--VIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGN-AY 63
F++++ RLG+I G V+KTP F+ G++ + D V + A
Sbjct: 3 FSIESSPNGGRLGKITVGSGNKVLKTPCFLLYTKRGSIPHLTPDVVEN-----QFDIPAL 57
Query: 64 HLMLRPGAERIARL------GGLHKFIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRS 117
+ +R+ G KFI + L S G +
Sbjct: 58 YQGTLSTLDRLEESLTLTNEGTGKKFIGM-------PSVLPTLLLPDPTSPLPSGYNDQK 110
Query: 118 HIDGSLYRVSPEES------VHIQNLLGSD-IQMQLDECLALPAEDKELKRAMELSLRWA 170
+ +++ S + S + I L D ++ D + P K + ++++ S+ +
Sbjct: 111 SV--NIWTASGKVSLTVDLYMEIVLSLCPDLVEPLNDTDTSPPGAKKRVPKSVDRSVNFT 168
Query: 171 ERSLVAFGNQPG---KALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGL-AVGEPQEV 226
L+A +FG V D L A + G A G E +
Sbjct: 169 TELLLALEKVNAFNTTKIFGGVPDLDRQYLTPIFAREQENQLYGGIAFLGFSNNKETDKE 228
Query: 227 MLHILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFT---- 282
ML++L L LP ++P + G +P ++L+ + G+D+FD P +A G+A T
Sbjct: 229 MLNLLEADLVGLPEDKPRCISGFESPLEVLECIQRGIDLFDSSFPYQATEAGVALTFSFD 288
Query: 283 -----------RFGKINLRNARHIDDMRPLDAESHCSALRDYSRAYLHHLLRVNESLAGM 331
G +++ + + +D PL + C R Y+RAYLHHLL+ E LA +
Sbjct: 289 PPSKDDLNSKIELG-LDMWDEKFAEDFTPLQSGCVCYTCRKYTRAYLHHLLQTRELLAWI 347
Query: 332 ILSWANLAYYQDLMKEIRSAIAED 355
+L N+ +Y + IR ++ ED
Sbjct: 348 LLMLHNVYHYTAFFQGIRESLQED 371
>gnl|CDD|31738 COG1549, COG1549, Queuine tRNA-ribosyltransferases, contain PUA
domain [Translation, ribosomal structure and
biogenesis].
Length = 519
Score = 30.7 bits (69), Expect = 0.72
Identities = 22/83 (26%), Positives = 30/83 (36%), Gaps = 7/83 (8%)
Query: 245 YLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDAE 304
Y G+ P++I V GVD+FD + GL FT FG R D++ L
Sbjct: 99 YASGLADPENIPLLVYLGVDLFDDSLAKIYAYEGLYFTPFGISFDREDLPRDNVEFLREM 158
Query: 305 SHC-------SALRDYSRAYLHH 320
LR+ L
Sbjct: 159 LERVRRAIRNGTLRELVEKALVT 181
>gnl|CDD|153283 cd07599, BAR_Rvs167p, The Bin/Amphiphysin/Rvs (BAR) domain of
Saccharomyces cerevisiae Reduced viability upon
starvation protein 167 and similar proteins. BAR
domains are dimerization, lipid binding and curvature
sensing modules found in many different proteins with
diverse functions. This subfamily is composed of fungal
proteins with similarity to Saccharomyces cerevisiae
Reduced viability upon starvation protein 167 (Rvs167p)
and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S.
cerevisiae Rvs167p plays a role in regulation of the
actin cytoskeleton, endocytosis, and sporulation. It
forms a heterodimer with another BAR domain protein
Rvs161p. Rvs161p and Rvs167p share common functions but
are not interchangeable. Their BAR domains cannot be
replaced with each other and the overexpression of one
cannot suppress the mutant phenotypes of the other.
Rvs167p also interacts with the GTPase activating
protein (GAP) Gyp5p, which is involved in ER to Golgi
vesicle trafficking. BAR domains form dimers that bind
to membranes, induce membrane bending and curvature, and
may also be involved in protein-protein interactions.
Length = 216
Score = 30.3 bits (69), Expect = 1.0
Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 24/78 (30%)
Query: 302 DAESHCSALRDYSRAY-------LHHLLRVNESLAGMI-----------------LSWAN 337
E L + S+A+ L H + + A + + A
Sbjct: 13 SLEKSLKKLIEQSKAFRDSWRSILTHQIAFAKEFAELYDPIVGPKESVGSHPAPESTLAR 72
Query: 338 LAYYQDLMKEIRSAIAED 355
L+ Y ++E++ + E+
Sbjct: 73 LSRYVKALEELKKELLEE 90
>gnl|CDD|173756 cd08216, PK_STRAD, Pseudokinase domain of STE20-related kinase
adapter protein. Protein Kinase family, STE20-related
kinase adapter protein (STRAD) subfamily, pseudokinase
domain. The STRAD subfamily is part of a larger
superfamily that includes the catalytic domains of
serine/threonine kinases (STKs), protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
pseudokinase domain shows similarity to protein kinases
but lacks crucial residues for catalytic activity. STRAD
forms a complex with the scaffolding protein MO25, and
the STK, LKB1, resulting in the activation of the
kinase. In the complex, LKB1 phosphorylates and
activates adenosine monophosphate-activated protein
kinases (AMPKs), which regulate cell energy metabolism
and cell polarity. LKB1 is a tumor suppressor linked to
the rare inherited disease, Peutz-Jeghers syndrome,
which is characterized by a predisposition to benign
polyps and hyperpigmentation of the buccal mucosa. There
are two forms of STRAD, alpha and beta, that complex
with LKB1 and MO25. The structure of STRAD-alpha is
available and shows that this protein binds ATP, has an
ordered activation loop, and adopts a closed
conformation typical of fully active protein kinases. It
does not possess activity due to nonconservative
substitutions of essential catalytic residues. ATP
binding enhances the affinity of STRAD for MO25. The
conformation of STRAD-alpha stabilized through ATP and
MO25 may be needed to activate LKB1.
Length = 314
Score = 30.0 bits (68), Expect = 1.0
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 14/84 (16%)
Query: 70 GAERIARLGGLHKFIRWFKPILTDSGGFQVMS-LSKLCSIDEQGVRFRS------HIDGS 122
+ I G +H+ ++ IL G V+S L S+ + G R R +
Sbjct: 113 ALDYIHSKGFIHRSVK-ASHILLSGDGKVVLSGLRYSVSMIKHGKRQRVVHDFPKSSVKN 171
Query: 123 LYRVSPEESVHIQNLLG----SDI 142
L +SPE V QNL G SDI
Sbjct: 172 LPWLSPE--VLQQNLQGYNEKSDI 193
>gnl|CDD|31364 COG1171, IlvA, Threonine dehydratase [Amino acid transport and
metabolism].
Length = 347
Score = 29.8 bits (67), Expect = 1.3
Identities = 17/54 (31%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Query: 28 IKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNAYHLMLRPGAERIARLGGLH 81
IK MP T + D R GA+VIL AE +A GL
Sbjct: 98 IKATIVMPETTP----KIKVDATRGYGAEVILHGDNFDDAYAAAEELAEEEGLT 147
>gnl|CDD|39590 KOG4389, KOG4389, KOG4389,
Acetylcholinesterase/Butyrylcholinesterase [Signal
transduction mechanisms].
Length = 601
Score = 28.8 bits (64), Expect = 2.9
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 164 ELSLRWAERSLVAFGNQPGK-ALFGIVQGGDNINLRSFS 201
+L+L+W + ++ AFG P + LFG G ++ S
Sbjct: 200 QLALQWVQENIAAFGGNPSRVTLFGESAGAASVVAHLLS 238
>gnl|CDD|144346 pfam00708, Acylphosphatase, Acylphosphatase.
Length = 90
Score = 28.0 bits (63), Expect = 4.4
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 186 FGIVQGGDNINLRSFSAERLKELDLKGYA 214
G VQG + R F +EL LKGY
Sbjct: 10 TGRVQG---VGFRPFVYRLARELGLKGYV 35
>gnl|CDD|38075 KOG2864, KOG2864, KOG2864, Nuclear division RFT1 protein [Cell
cycle control, cell division, chromosome partitioning].
Length = 530
Score = 28.0 bits (62), Expect = 4.6
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 74 IARLGGLHKFIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSL---YRVSP-E 129
+ +L F + K +LT+ G VM+ ++L S +QGV GSL P E
Sbjct: 241 LLKLTKSFTFQSFLKQLLTE-GDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIE 299
Query: 130 ESVHI--QNLLGSDIQMQLDECLAL 152
ES +I LL D Q + + + +
Sbjct: 300 ESSYIYFARLLSRDNQENVKKAVDV 324
>gnl|CDD|31208 COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope
biogenesis, outer membrane].
Length = 414
Score = 27.5 bits (61), Expect = 6.4
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 2 DKNFHFNLKAVSGSAR-LGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVIL- 59
D++ +L V A+ +GEI+ + V+ + +PVGT V+A ++ +V
Sbjct: 89 DEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASN 148
Query: 60 ------GNAYHLMLRPGAERI 74
G+A + L P +RI
Sbjct: 149 PEFLREGSAVYDFLYP--DRI 167
>gnl|CDD|113282 pfam04506, Rft-1, Rft protein.
Length = 533
Score = 27.1 bits (60), Expect = 8.9
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 87 FKPILTDSGGFQVMSLSKLCSIDEQGV 113
K +LT+ G VM+ ++L S+ EQ V
Sbjct: 253 LKQLLTE-GDKYVMTFTELLSLKEQAV 278
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.323 0.140 0.420
Gapped
Lambda K H
0.267 0.0628 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,768,329
Number of extensions: 257559
Number of successful extensions: 572
Number of sequences better than 10.0: 1
Number of HSP's gapped: 570
Number of HSP's successfully gapped: 20
Length of query: 378
Length of database: 6,263,737
Length adjustment: 95
Effective length of query: 283
Effective length of database: 4,210,882
Effective search space: 1191679606
Effective search space used: 1191679606
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.3 bits)