RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780178|ref|YP_003064591.1| queuine tRNA-ribosyltransferase [Candidatus Liberibacter asiaticus str. psy62] (378 letters) >gnl|CDD|178873 PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional. Length = 366 Score = 639 bits (1650), Expect = 0.0 Identities = 202/358 (56%), Positives = 249/358 (69%), Gaps = 1/358 (0%) Query: 5 FHFNLKAVSGSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNAYH 64 F L G AR G + TP GV++TPAFMPVGT GTVK M +++++ GA +ILGN YH Sbjct: 3 MKFELIKTDGRARRGRLTTPHGVVETPAFMPVGTYGTVKGMTPEELKETGAQIILGNTYH 62 Query: 65 LMLRPGAERIARLGGLHKFIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLY 124 L LRPG E I + GGLHKF+ W PILTDSGGFQV SLS L I E+GV FRSHIDGS + Sbjct: 63 LWLRPGLEIIKKHGGLHKFMNWDGPILTDSGGFQVFSLSDLRKITEEGVTFRSHIDGSKH 122 Query: 125 RVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQP-GK 183 ++PE+S+ IQ LGSDI M DEC PA K++ME +LRWAERS A + Sbjct: 123 FLTPEKSMEIQYDLGSDIVMAFDECPPYPATYDYAKKSMERTLRWAERSRDAHDRLENDQ 182 Query: 184 ALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERP 243 ALFGIVQGG +LR SA+ L E+D GYAIGGL+VGEP+E M IL + P+LP ++P Sbjct: 183 ALFGIVQGGVYEDLRRESAKGLVEIDFDGYAIGGLSVGEPKEEMYRILEHTAPLLPEDKP 242 Query: 244 HYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDA 303 YLMGVGTP+D+++ V+ GVDMFDCVMPTR R+G FT FG++N+RNA++ +D RPLD Sbjct: 243 RYLMGVGTPEDLVEGVARGVDMFDCVMPTRNARNGTLFTSFGRLNIRNAKYKEDTRPLDP 302 Query: 304 ESHCSALRDYSRAYLHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFA 361 E C R+YSRAYLHHL R E L + + NL YYQ LM+EIR AI E F +F Sbjct: 303 ECDCYTCRNYSRAYLHHLFRAGEILGARLNTIHNLHYYQRLMEEIREAIEEGRFEEFR 360 >gnl|CDD|129522 TIGR00430, Q_tRNA_tgt, tRNA-guanine transglycosylase, queuosine-34-forming. This tRNA-guanine transglycosylase (tgt) catalyzes an exchange for the guanine base at position 34 of many tRNAs; this nucleotide is subsequently modified to queuosine. The Archaea have a closely related enzyme that catalyzes a base exchange for guanine at position 15 in some tRNAs, a site that is subsequently converted to the archaeal-specific modified base archaeosine (7-formamidino-7-deazaguanosine), while Archaeoglobus fulgidus has both enzymes. Length = 368 Score = 459 bits (1183), Expect = e-130 Identities = 192/355 (54%), Positives = 248/355 (69%), Gaps = 1/355 (0%) Query: 7 FNLKAVSGSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNAYHLM 66 F L+ AR+G++ TP G ++TP FMPVGT GTVK + +++ GA++IL N YHL Sbjct: 1 FELQKTDKHARVGKLNTPHGSVETPVFMPVGTLGTVKGLTPEELEATGAEIILANTYHLW 60 Query: 67 LRPGAERIARLGGLHKFIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLYRV 126 LRPG + + LGGLHKF++W PILTDSGGFQV SLS L I+E+GV F+S IDGS + Sbjct: 61 LRPGQKIVKELGGLHKFMQWDGPILTDSGGFQVFSLSDLRKIEEEGVHFKSPIDGSKIFL 120 Query: 127 SPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGK-AL 185 +PE+S+ IQ LGSDI M DEC PA+ +++ E +LRWAER L A + K AL Sbjct: 121 TPEKSMEIQYALGSDIIMAFDECTPYPADRDYAEKSTERTLRWAERCLEAHDRRGNKQAL 180 Query: 186 FGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHY 245 FGIVQGG +LRS SAE L ELD GYAIGGL+VGEP+E ML IL + P+LP ++P Y Sbjct: 181 FGIVQGGTYEDLRSQSAEGLIELDFPGYAIGGLSVGEPKEDMLRILEHTAPLLPKDKPRY 240 Query: 246 LMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDAES 305 LMGVGTP+D+L ++ G+DMFDCVMPTR R+G F G+IN++NA++ DD RPLD E Sbjct: 241 LMGVGTPEDLLNAIRRGIDMFDCVMPTRNARNGTLFVTEGRINIKNAKYKDDTRPLDEEC 300 Query: 306 HCSALRDYSRAYLHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDF 360 C ++YSRAYL HL+R NE L + + NL +Y LM++IR AI ED F+ F Sbjct: 301 DCYTCKNYSRAYLRHLIRCNELLGARLATLHNLHFYLRLMEKIRQAILEDRFLSF 355 >gnl|CDD|129541 TIGR00449, tgt_general, tRNA-guanine transglycosylases, various specificities. Different tRNA-guanine transglycosylases catalyze different tRNA base modifications. Two guanine base substitutions by different enzymes described by the model are involved in generating queuosine at position 34 in bacterial tRNAs and archaeosine at position 15 in archaeal tRNAs. This model is designed for fragment searching, so the superfamily is used loosely. Length = 367 Score = 439 bits (1130), Expect = e-124 Identities = 183/354 (51%), Positives = 239/354 (67%) Query: 7 FNLKAVSGSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNAYHLM 66 F +K G AR+G + TP G ++TP FMPVGT GTVK + ++++ GA +IL N YHL Sbjct: 1 FEIKKTDGHARVGRLKTPHGSVETPVFMPVGTLGTVKGLTPEELKKTGAQIILANTYHLY 60 Query: 67 LRPGAERIARLGGLHKFIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLYRV 126 LRPG + +A LGGLHKF++W PILTDSGGFQV SL L I+E+GV F+S IDGS + Sbjct: 61 LRPGQKIVALLGGLHKFMQWDGPILTDSGGFQVFSLGDLRKIEEEGVHFKSPIDGSKIFL 120 Query: 127 SPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALF 186 +PE+ + IQ LGSDI M LDEC PA+ + ++E +LRWAE SL + ALF Sbjct: 121 TPEKIMEIQYALGSDIIMALDECTPPPADYDYAEESLERTLRWAEESLEYHKRRNENALF 180 Query: 187 GIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYL 246 GIVQGG +LR SAE L ELD GYAIGG++VGEP+ ML IL +V P+LP ++P YL Sbjct: 181 GIVQGGTYPDLRRQSAEGLAELDFDGYAIGGVSVGEPKRDMLRILEHVAPLLPKDKPRYL 240 Query: 247 MGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDAESH 306 MGVGTP+ + +VS G+DMFDCV PTR R+G T G+I ++NA++ DD RPLD Sbjct: 241 MGVGTPELLANAVSLGIDMFDCVAPTRYARNGTLLTTEGRIKIKNAKYKDDTRPLDEPCD 300 Query: 307 CSALRDYSRAYLHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDF 360 C ++YSRAYL HL+R NE L + + NL + L+++IR AI ED + F Sbjct: 301 CYVCKNYSRAYLRHLIRCNELLGARLATEHNLHFSFRLIEKIRQAILEDRLLSF 354 >gnl|CDD|134464 PRK01008, PRK01008, queuine tRNA-ribosyltransferase; Provisional. Length = 372 Score = 272 bits (698), Expect = 9e-74 Identities = 134/375 (35%), Positives = 202/375 (53%), Gaps = 25/375 (6%) Query: 1 MDKNFHFNLKAVSGSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILG 60 M F ++ AR+G I T G+I TPAF+PV T G +K + + ++ Sbjct: 1 MALKFELLHQSKKSRARVGRIETAHGIIDTPAFVPVATNGALKGV----LDHSNIPLMFC 56 Query: 61 NAYHLMLRPGAERIARLGGLHKFIRWFKPILTDSGGFQVMSL------------------ 102 N YHL++ PG E IA +GGLH+FI PI+TDSGGFQ+ SL Sbjct: 57 NTYHLLVHPGTEAIAAMGGLHQFIGRNAPIITDSGGFQIFSLAYGSVAEEIKSCGKKKGG 116 Query: 103 SKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRA 162 S + I ++GV F+S+ DG +SPE SV Q LG+DI + LDE L A+ ++ Sbjct: 117 SSILKITDEGVWFKSYRDGRKLFLSPEISVQAQKDLGADIIIPLDELLPFHADPTYFLQS 176 Query: 163 MELSLRWAERSLVAFGNQPG-KALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVG 221 + + W +RSL P ++++G++ GG + + R + +++L G AIGG ++G Sbjct: 177 CQRTYVWEKRSLDYHLKNPRHQSMYGVIHGGIDPDQRKIGCKFVEDLPFDGSAIGG-SLG 235 Query: 222 EPQEVMLHILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAF 281 + + M+ ++ L ERP +L+G+G I +V +G+D FD PT+A RHGL Sbjct: 236 KNLQEMVEVVGVTTSNLSKERPVHLLGIGDLPSIWATVGFGIDSFDSSYPTKAARHGLIL 295 Query: 282 TRFGKINLRNARHIDDMRPLDAESHCSA-LRDYSRAYLHHLLRVNESLAGMILSWANLAY 340 T+ G + + N R+ D+ P++ C A SRAYL HL +V+E AG+ S NL + Sbjct: 296 TKQGPLKINNQRYSSDLNPIEPGCSCLACSSGISRAYLRHLFKVHEPNAGIWASIHNLHH 355 Query: 341 YQDLMKEIRSAIAED 355 Q +MKEIR I D Sbjct: 356 MQQVMKEIREQILND 370 >gnl|CDD|184121 PRK13534, PRK13534, 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional. Length = 639 Score = 108 bits (273), Expect = 2e-24 Identities = 73/267 (27%), Positives = 121/267 (45%), Gaps = 32/267 (11%) Query: 7 FNLKAVSGSARLGEIITPRGVIKTPAFMPVGTAG--TVKAMYFDQVRDLGADVILGNAYH 64 F +KA R+G++ T I+TP MPV TV D+++ LG D+++ N+Y Sbjct: 2 FEIKARDALGRIGKLKTNGKKIETPTIMPVINPKKQTVDP---DEIKKLGFDIVITNSYI 58 Query: 65 LMLRPGAERIARLGGLHKFIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLY 124 + P A G+H I + PI+TDSG FQ LS ++ Sbjct: 59 IYKTPELREKALEKGIHSLIGFDGPIMTDSGSFQ---LSVYGDVE--------------- 100 Query: 125 RVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKA 184 V+ E + Q +G DI LD ++ + +E +L A+ ++ A Sbjct: 101 -VTNREIIEFQEKIGVDIGTILDIPTPPDVSREKAEEDLEETLERAKEAIEIKEKL---A 156 Query: 185 LFGIVQGGDNINLRSFSAERLKELDLKGYAIGG----LAVGEPQEVMLHILSNVLPILPV 240 L G VQG +LR SAE + +++ Y IG + ++++ I+++ + LP Sbjct: 157 LNGTVQGSTYPDLRQKSAEEMSKMNFDIYPIGAVVPLMESYRYRDLVDIIINSKMH-LPT 215 Query: 241 ERPHYLMGVGTPDDILKSVSYGVDMFD 267 +P +L G G P +V+ G D+FD Sbjct: 216 NKPVHLFGAGHPMFFALAVALGCDLFD 242 >gnl|CDD|184120 PRK13533, PRK13533, 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional. Length = 487 Score = 101 bits (253), Expect = 4e-22 Identities = 75/276 (27%), Positives = 126/276 (45%), Gaps = 48/276 (17%) Query: 6 HFNLKAVSGSARLGEIITPRGVIKTPAFMPV--GTAGTVKAMYFDQVRDLGADVILGNAY 63 F ++ + R+G++ TP GV++TPA PV + D++++ GA++++ N+Y Sbjct: 4 VFEIRDKDLAGRIGKLKTPHGVVETPALFPVINPNKQEISP---DELKEFGAEILITNSY 60 Query: 64 HLMLRPGAERIARLGGLHKFIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSL 123 ++ R E+ A GLHK + + PI+TDSG +Q++ G ++ Sbjct: 61 -IIYRSLREK-ALEKGLHKLLGFDGPIMTDSGSYQLL---------VYG-----DVE--- 101 Query: 124 YRVSPEESVHIQNLLGSDIQMQLDECLALP----AEDKELKRAMELSLRWAERSLVAFGN 179 V+ EE + Q +GSDI + LD +P + +E + +E +L E + Sbjct: 102 --VTNEEILEFQRKIGSDIGVPLD----IPTPPDVDYEEAEEELEETLERLEEAAELI-- 153 Query: 180 QPGKALF-GIVQGGDNINLRSFSAERLKELDLKGYAIGGLAV-------GEPQEVMLHIL 231 Q G L+ VQGG +LR SA +L Y IG + + +V+L Sbjct: 154 QDGDMLWVAPVQGGTYPDLREESAREASKLGFDVYPIGAVVPLMERYRYDDLVDVVLAAK 213 Query: 232 SNVLPILPVERPHYLMGVGTPDDILKSVSYGVDMFD 267 L P +L G G P +V+ G D+FD Sbjct: 214 RG----LGPGAPVHLFGAGHPMMFALAVALGCDLFD 245 >gnl|CDD|161875 TIGR00432, arcsn_tRNA_tgt, tRNA-guanine transglycosylase, archaeosine-15-forming. This tRNA-guanine transglycosylase (tgt) differs from the tgt of E. coli and other Bacteria in the site of action and the modification that results. It exchanges 7-cyano-7-deazaguanine (preQ0) with guanine at position 15 of archaeal tRNA; this nucleotide is subsequently converted to archaeosine, found exclusively in the Archaea. This enzyme from Haloferax volcanii has been purified, characterized, and partially sequenced and is the basis for identifying this family. In contrast, bacterial tgt catalyzes the exchange of preQ0 or preQ1 for the guanine base at position 34; this nucleotide is subsequently modified to queuosine. Archeoglobus fulgidus has both enzymes, while some other Archaea have just this one. Length = 540 Score = 52.2 bits (125), Expect = 2e-07 Identities = 38/143 (26%), Positives = 57/143 (39%), Gaps = 8/143 (5%) Query: 130 ESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIV 189 E + Q +GSDI LD + + +E++L R + L V Sbjct: 2 EIIEFQRHIGSDIGTPLDIPTPPDVDYARAESELEITLE-RARESIELLEGAENLLNVPV 60 Query: 190 QGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEV-----MLHILSNVLPILPVERPH 244 QG + +LR F+A +L Y IG AV E + ++ LP P Sbjct: 61 QGSTHPDLRRFAAGEAAKLGGDIYPIG--AVVPLMEAYRYRDLARVILESRSALPPVEPI 118 Query: 245 YLMGVGTPDDILKSVSYGVDMFD 267 +L G G P +V+ G D+FD Sbjct: 119 HLFGCGHPMLFALAVALGCDLFD 141 >gnl|CDD|182772 PRK10841, PRK10841, hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional. Length = 924 Score = 30.3 bits (69), Expect = 0.80 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 8/46 (17%) Query: 300 PLDAESHCSALRDYSRAYLHHLLRVNESLAGMILSWA-NLAYYQDL 344 PL A+S CSA+ + R L ESLA + W N + DL Sbjct: 81 PLFADSDCSAMSNTWRGSL-------ESLAWFMRYWRDNFSAAYDL 119 Score = 28.4 bits (64), Expect = 3.2 Identities = 8/15 (53%), Positives = 12/15 (80%) Query: 223 PQEVMLHILSNVLPI 237 P+EV+ HI +N LP+ Sbjct: 522 PREVINHITANYLPL 536 >gnl|CDD|181319 PRK08246, PRK08246, threonine dehydratase; Provisional. Length = 310 Score = 30.3 bits (69), Expect = 0.85 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 5/49 (10%) Query: 33 FMPVGTAGTVKAMYFDQVRDLGADVIL-GNAYHLMLRPGAERIARLGGL 80 F+P TA K ++R LGA+V++ G Y L A G L Sbjct: 97 FVP-ETAPPAKV---ARLRALGAEVVVVGAEYADALEAAQAFAAETGAL 141 >gnl|CDD|182527 PRK10534, PRK10534, L-threonine aldolase; Provisional. Length = 333 Score = 29.3 bits (66), Expect = 1.7 Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 48 DQVRDLGADVILGNAYHLMLRPGAERIARLG 78 +Q+R+ GADV+ + L +R G E+ A LG Sbjct: 261 EQLREAGADVMRQDTNMLFVRVGEEQAAALG 291 >gnl|CDD|183680 PRK12683, PRK12683, transcriptional regulator CysB-like protein; Reviewed. Length = 309 Score = 27.7 bits (62), Expect = 4.6 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 10/72 (13%) Query: 27 VIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNAYHLMLRPGAERIA-RLGGL----- 80 VIKT + +G G V AM +D RD G + + HL R+ R G Sbjct: 229 VIKTYVELGMGV-GIVAAMAYDPQRDTGLVAL--DTDHL-FEANTTRVGLRRGAYLRGYA 284 Query: 81 HKFIRWFKPILT 92 ++FI F P L+ Sbjct: 285 YRFIELFAPHLS 296 >gnl|CDD|182450 PRK10426, PRK10426, alpha-glucosidase; Provisional. Length = 635 Score = 27.7 bits (62), Expect = 4.8 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 10/35 (28%) Query: 157 KELKRAMELSLRWAERSLVAF--------GNQPGK 183 +KR EL LRW E AF GN+PG Sbjct: 467 FGMKRTKELLLRWCE--FSAFTPVMRTHEGNRPGD 499 >gnl|CDD|165912 PLN02270, PLN02270, phospholipase D alpha. Length = 808 Score = 27.6 bits (61), Expect = 5.8 Identities = 14/42 (33%), Positives = 20/42 (47%) Query: 188 IVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLH 229 I+ G NIN RS R E+ + GY L+ +P +H Sbjct: 670 IIIGSANINQRSMDGARDSEIAMGGYQPYHLSTRQPARGQIH 711 >gnl|CDD|161796 TIGR00272, DPH2, diphthamide biosynthesis protein 2. This protein has been shown in Saccharomyces cerevisiae to be one of several required for the modification of a particular histidine residue of translation elongation factor 2 to diphthamide. This modified site can then become the target for ADP-ribosylation by diphtheria toxin. Length = 496 Score = 27.2 bits (60), Expect = 7.7 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 3/69 (4%) Query: 198 RSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGVGTPDDILK 257 R ++ G +G L V +E + + I + HYL VG P+ Sbjct: 271 RYKLVHVARDAGCIGIVVGTLGVRNTRETINEL---RKMIKTAGKKHYLFVVGKPNPAKL 327 Query: 258 SVSYGVDMF 266 + +D+F Sbjct: 328 ANFEDIDIF 336 >gnl|CDD|183432 PRK12316, PRK12316, peptide synthase; Provisional. Length = 5163 Score = 26.8 bits (59), Expect = 8.3 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 2/70 (2%) Query: 251 TPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDAESHCSAL 310 + + + S++Y D+FD R RH R + R +D++ LDAE L Sbjct: 2986 SAEGLGASLTYATDLFDARTVERLARHWQNLLR--GMVENPQRSVDELAMLDAEERGQLL 3043 Query: 311 RDYSRAYLHH 320 ++ + Sbjct: 3044 EAWNATAAEY 3053 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.323 0.140 0.420 Gapped Lambda K H 0.267 0.0683 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 6,508,463 Number of extensions: 437581 Number of successful extensions: 822 Number of sequences better than 10.0: 1 Number of HSP's gapped: 803 Number of HSP's successfully gapped: 24 Length of query: 378 Length of database: 5,994,473 Length adjustment: 95 Effective length of query: 283 Effective length of database: 3,941,713 Effective search space: 1115504779 Effective search space used: 1115504779 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 58 (26.2 bits)