RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780178|ref|YP_003064591.1| queuine
tRNA-ribosyltransferase [Candidatus Liberibacter asiaticus str. psy62]
         (378 letters)



>d1r5ya_ c.1.20.1 (A:) Queosine tRNA-guanine transglycosylase
           {Zymomonas mobilis [TaxId: 542]}
          Length = 372

 Score =  339 bits (870), Expect = 2e-94
 Identities = 204/368 (55%), Positives = 262/368 (71%), Gaps = 4/368 (1%)

Query: 5   FHFNLKAVSGSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNAYH 64
           F F++ A  G AR G I   RGVI+TPAFMPVGTA TVKA+  + VR  GAD+ILGN YH
Sbjct: 4   FSFSIAAREGKARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYH 63

Query: 65  LMLRPGAERIARLGGLHKFIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLY 124
           LMLRPGAERIA+LGGLH F+ W +PILTDSGG+QVMSLS L    E+GV F+SH+DGS +
Sbjct: 64  LMLRPGAERIAKLGGLHSFMGWDRPILTDSGGYQVMSLSSLTKQSEEGVTFKSHLDGSRH 123

Query: 125 RVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQP--- 181
            +SPE S+ IQ+LLGSDI M  DEC   PA       +ME S+RWA+RS  AF ++    
Sbjct: 124 MLSPERSIEIQHLLGSDIVMAFDECTPYPATPSRAASSMERSMRWAKRSRDAFDSRKEQA 183

Query: 182 -GKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPV 240
              ALFGI QG    NLR  SA+ L E+   GYA+GGLAVGE Q+ M  +L   +P+LP 
Sbjct: 184 ENAALFGIQQGSVFENLRQQSADALAEIGFDGYAVGGLAVGEGQDEMFRVLDFSVPMLPD 243

Query: 241 ERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRP 300
           ++PHYLMGVG PDDI+ +V  G+DMFDCV+PTR+GR+G AFT  G IN+RNAR  +D++P
Sbjct: 244 DKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTRSGRNGQAFTWDGPINIRNARFSEDLKP 303

Query: 301 LDAESHCSALRDYSRAYLHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDF 360
           LD+E HC+  + +SRAY+HHL+R  E L  M+++  N+A+YQ LM++IR +I+E  F  F
Sbjct: 304 LDSECHCAVCQKWSRAYIHHLIRAGEILGAMLMTEHNIAFYQQLMQKIRDSISEGRFSQF 363

Query: 361 AMQTQENW 368
           A   +  +
Sbjct: 364 AQDFRARY 371


>d1iq8a1 c.1.20.1 (A:6-360) Archaeosine tRNA-guanine
           transglycosylase, N-terminal domain {Archaeon Pyrococcus
           horikoshii [TaxId: 53953]}
          Length = 355

 Score =  262 bits (669), Expect = 5e-71
 Identities = 77/364 (21%), Positives = 141/364 (38%), Gaps = 38/364 (10%)

Query: 3   KNFHFNLKAVSGSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNA 62
           K   F +KA  G+ R+G++      I+TPA MPV     +  +   ++  +G ++I+ N+
Sbjct: 1   KMLKFEIKARDGAGRIGKLEVNGKKIETPAIMPVVNPKQM-VVEPKELEKMGFEIIITNS 59

Query: 63  YHLMLRPGAERIARLGGLHKFIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGS 122
           Y +       R A   G+H+ + +   I  DSG FQ+M    +   + + + F+  I   
Sbjct: 60  YIIYKDEELRRKALELGIHRMLDYNGIIEVDSGSFQLMKYGSIEVSNREIIEFQHRI--- 116

Query: 123 LYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPG 182
                           G DI   LD      A  ++  + +E++L  A  +         
Sbjct: 117 ----------------GVDIGTFLDIPTPPDAPREQAVKELEITLSRAREAEEIKEIPM- 159

Query: 183 KALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPI---LP 239
                 +QG    +LR ++A RL  ++ + + IGG+           ++  V+     L 
Sbjct: 160 ---NATIQGSTYTDLRRYAARRLSSMNFEIHPIGGVVPLLESYRFRDVVDIVISSKMALR 216

Query: 240 VERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMR 299
            +RP +L G G P     +V+ GVD+FD        +     T  G   L    +     
Sbjct: 217 PDRPVHLFGAGHPIVFALAVAMGVDLFDSASYALYAKDDRYMTPEGTKRLDELDY----- 271

Query: 300 PLDAESHCSALRDYSRAYLHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVD 359
                  C     Y+   L  + +   +    +L+  NL   ++ +K ++ AI E     
Sbjct: 272 ---FPCSCPVCSKYTPQELREMPKEERT---RLLALHNLWVIKEEIKRVKQAIKEGELWR 325

Query: 360 FAMQ 363
              +
Sbjct: 326 LVDE 329


>d2ga1a1 a.4.1.16 (A:1-102) Hypothetical protein Ava_0674 (Alr1493
           orthologue) {Anabaena variabilis [TaxId: 1172]}
          Length = 102

 Score = 26.3 bits (58), Expect = 4.6
 Identities = 7/20 (35%), Positives = 11/20 (55%)

Query: 336 ANLAYYQDLMKEIRSAIAED 355
           A   YY+   ++I   IA+D
Sbjct: 83  AAWHYYEQNPEQIDREIAQD 102


>d1ra6a_ e.8.1.4 (A:) Viral RNA polymerase {Poliovirus type 1,
           strain Mahoney [TaxId: 12080]}
          Length = 461

 Score = 25.3 bits (55), Expect = 7.6
 Identities = 20/123 (16%), Positives = 41/123 (33%), Gaps = 23/123 (18%)

Query: 253 DDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDAESHCSALRD 312
           DD++ S  + VD    ++      +GL  T   K         +++  L          +
Sbjct: 328 DDVIASYPHEVDAS--LLAQSGKDYGLTMTPADKSATFETVTWENVTFL---KRFFRADE 382

Query: 313 YSRAYLHHLL---RVNESL--------------AGMILSWANL-AYYQDLMKEIRSAIAE 354
                +H ++    ++ES+              +  +L+W N    Y   + +IRS    
Sbjct: 383 KYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLLAWHNGEEEYNKFLAKIRSVPIG 442

Query: 355 DCF 357
              
Sbjct: 443 RAL 445


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.140    0.420 

Gapped
Lambda     K      H
   0.267   0.0610    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,467,736
Number of extensions: 69873
Number of successful extensions: 188
Number of sequences better than 10.0: 1
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 10
Length of query: 378
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 291
Effective length of database: 1,213,086
Effective search space: 353008026
Effective search space used: 353008026
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.8 bits)