Query gi|254780180|ref|YP_003064593.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 360 No_of_seqs 165 out of 1731 Neff 6.3 Searched_HMMs 33803 Date Mon May 23 02:36:20 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780180.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1wdi_A Hypothetical protein T 100.0 0 0 1017.5 24.5 341 1-357 2-345 (345) 2 >1yy3_A S-adenosylmethionine:t 100.0 0 0 769.1 17.3 238 1-357 5-243 (243) 3 >1vky_A S-adenosylmethionine:t 100.0 0 0 761.6 18.9 238 1-357 13-250 (250) 4 >1yy3_A S-adenosylmethionine:t 99.9 1.3E-23 3.9E-28 190.2 9.0 103 67-182 1-103 (103) 5 >1vky_A S-adenosylmethionine:t 99.9 1.4E-22 4.2E-27 182.8 6.5 97 68-182 1-97 (97) 6 >2wbq_A L-arginine beta-hydrox 87.0 0.78 2.3E-05 26.6 3.9 11 107-117 206-216 (265) 7 >1ds1_A Clavaminate synthase 1 85.5 0.79 2.3E-05 26.5 3.2 20 52-71 186-205 (247) 8 >2og5_A Putative oxygenase; no 83.2 1.1 3.3E-05 25.4 3.2 24 43-66 84-107 (357) 9 >3im1_A Protein SNU246, PRE-mR 66.7 2.9 8.7E-05 22.4 1.7 19 199-217 6-24 (40) 10 >2iye_A Copper-transporting AT 64.3 5.6 0.00017 20.4 2.8 80 195-279 36-118 (164) 11 >2ho4_A Haloacid dehalogenase- 60.9 5.2 0.00015 20.7 2.1 43 178-220 5-47 (140) 12 >1nx8_A CARC, carbapenem synth 60.0 9.1 0.00027 18.9 3.2 19 47-65 30-48 (217) 13 >2r6f_A Excinuclease ABC subun 56.5 4.9 0.00014 20.9 1.3 72 181-272 87-170 (204) 14 >1a3w_A Pyruvate kinase; allos 54.9 15 0.00045 17.3 3.9 57 44-120 40-96 (99) 15 >3gg8_A Pyruvate kinase; malar 53.5 16 0.00047 17.1 5.4 76 23-119 16-92 (96) 16 >2oyc_A PLP phosphatase, pyrid 52.9 9.2 0.00027 18.9 2.3 43 177-219 18-60 (166) 17 >2vf7_A UVRA2, excinuclease AB 52.1 7.7 0.00023 19.4 1.8 60 193-272 118-182 (204) 18 >3hqn_D Pyruvate kinase, PK; T 50.7 16 0.00048 17.1 3.2 55 45-119 40-94 (98) 19 >1e0t_A Pyruvate kinase, PK; p 49.1 19 0.00055 16.7 5.0 80 19-119 12-92 (96) 20 >1vjr_A 4-nitrophenylphosphata 48.0 13 0.00039 17.8 2.4 92 176-269 13-114 (145) 21 >2vf7_A UVRA2, excinuclease AB 45.0 9 0.00027 18.9 1.2 72 181-272 98-182 (201) 22 >2hx1_A Predicted sugar phosph 43.3 18 0.00054 16.7 2.6 116 177-302 11-135 (162) 23 >3hvb_A Protein FIMX; EAL phos 37.8 27 0.0008 15.5 3.0 85 198-282 321-411 (437) 24 >3khd_A Pyruvate kinase; malar 35.2 30 0.00088 15.2 5.1 54 45-119 38-91 (95) 25 >1xne_A Hypothetical protein P 33.8 29 0.00086 15.3 2.4 66 107-192 33-102 (113) 26 >3gr4_A Pyruvate kinase isozym 33.6 31 0.00093 15.0 3.8 54 45-119 43-96 (100) 27 >1vim_A Hypothetical protein A 33.6 32 0.00093 15.0 3.1 78 248-339 102-179 (200) 28 >2bo9_A Carboxypeptidase A4; m 33.5 32 0.00093 15.0 2.8 125 208-345 182-308 (308) 29 >1yv9_A Hydrolase, haloacid de 33.4 17 0.0005 17.0 1.1 99 179-281 4-109 (154) 30 >1w91_A Beta-xylosidase; MAD, 33.2 23 0.00068 16.0 1.8 31 193-223 1-32 (128) 31 >1omh_A TRWC protein; protein- 31.9 14 0.00043 17.5 0.6 25 193-217 189-213 (223) 32 >1pca_A Procarboxypeptidase A 29.8 13 0.00038 17.8 0.0 103 215-329 285-391 (403) 33 >3dnp_A Stress response protei 29.7 24 0.0007 15.9 1.3 40 180-219 6-46 (175) 34 >3i1m_B 30S ribosomal protein 29.4 26 0.00078 15.6 1.5 20 250-269 123-142 (196) 35 >2q7t_A Protein TRAI, DNA heli 29.2 37 0.0011 14.5 2.4 27 192-218 192-218 (248) 36 >2hbw_A NLP/P60 protein; YP_32 29.1 37 0.0011 14.5 2.4 13 106-118 73-85 (150) 37 >2o7i_A Oligopeptide ABC trans 27.5 23 0.00069 16.0 1.0 111 94-211 35-161 (169) 38 >2i9e_A Triosephosphate isomer 27.5 31 0.00093 15.0 1.7 132 180-348 62-206 (259) 39 >1wui_S Periplasmic [NIFE] hyd 26.5 41 0.0012 14.2 3.6 62 213-293 66-128 (180) 40 >2om6_A Probable phosphoserine 26.4 32 0.00094 15.0 1.5 74 202-281 20-109 (150) 41 >3hv8_A Protein FIMX; EAL phos 26.3 41 0.0012 14.2 4.3 83 201-283 155-243 (268) 42 >1wde_A Probable diphthine syn 26.2 21 0.00064 16.2 0.6 107 110-218 6-117 (120) 43 >1jr2_A Uroporphyrinogen-III s 26.1 42 0.0012 14.2 2.2 16 264-279 102-117 (147) 44 >3knz_A Putative sugar binding 25.9 42 0.0012 14.1 4.9 42 248-302 77-118 (149) 45 >1jmc_A Protein (replication p 25.9 42 0.0012 14.1 3.5 20 99-118 62-82 (127) 46 >2r6f_A Excinuclease ABC subun 25.5 42 0.0013 14.1 2.0 61 192-272 124-189 (212) 47 >2nlz_A Cephalosporin acylase; 24.5 44 0.0013 13.9 2.1 18 199-216 15-32 (38) 48 >1dl5_A Protein-L-isoaspartate 23.8 45 0.0013 13.9 1.9 48 180-232 201-251 (253) 49 >3epr_A Hydrolase, haloacid de 23.8 31 0.00092 15.1 1.1 100 180-281 5-108 (154) 50 >3bkw_A MLL3908 protein, S-ade 23.8 46 0.0014 13.9 3.6 79 197-278 71-162 (201) 51 >3bbo_D Ribosomal protein L1; 23.7 22 0.00064 16.2 0.2 10 149-158 50-59 (88) 52 >2e28_A Pyruvate kinase, PK; a 23.2 47 0.0014 13.8 6.5 81 19-119 11-92 (96) 53 >1yqt_A RNAse L inhibitor; ATP 22.8 35 0.001 14.7 1.2 31 193-223 184-219 (276) 54 >2qi9_C Vitamin B12 import ATP 22.6 30 0.00088 15.2 0.8 64 193-281 159-231 (249) 55 >1zcz_A Bifunctional purine bi 22.6 48 0.0014 13.7 3.0 25 190-218 106-130 (133) 56 >2pcj_A ABC transporter, lipop 22.6 36 0.0011 14.6 1.2 33 193-225 166-203 (224) 57 >2obb_A Hypothetical protein; 22.2 40 0.0012 14.3 1.4 23 246-268 24-46 (142) 58 >3krs_A Triosephosphate isomer 21.8 47 0.0014 13.7 1.7 126 180-348 86-230 (271) 59 >1wcw_A Uroporphyrinogen III s 21.5 51 0.0015 13.5 3.2 36 244-279 16-61 (114) 60 >2yz2_A Putative ABC transport 21.4 40 0.0012 14.3 1.2 55 193-272 164-223 (266) 61 2k1g_A Solution Nmr Structure 21.2 49 0.0014 13.7 1.6 14 106-119 65-78 (135) 62 >1aw2_A Triosephosphate isomer 20.6 50 0.0015 13.6 1.6 63 181-272 66-133 (256) 63 >3d8t_A Uroporphyrinogen-III s 20.3 53 0.0016 13.4 4.0 35 245-279 18-62 (116) 64 >2vpq_A Acetyl-COA carboxylase 20.1 54 0.0016 13.4 1.8 28 251-278 13-40 (104) 65 >3gfz_A Klebsiella pneumoniae 20.0 54 0.0016 13.3 2.2 86 198-283 141-233 (264) No 1 >>1wdi_A Hypothetical protein TT0907; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: CIT; 2.10A {Thermus thermophilus} (A:) Probab=100.00 E-value=0 Score=1017.51 Aligned_cols=341 Identities=44% Similarity=0.672 Sum_probs=319.9 Q ss_pred CCCCCCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCC Q ss_conf 98633588889778616998781203135663788875315310143478726988799994795688899876404677 Q gi|254780180|r 1 MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHIN 80 (360) Q Consensus 1 M~lsdfDy~LP~elIAq~P~~~Rd~SRLLV~~r~~~~~~~i~h~~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~ 80 (360) |++|||||+||+|+|||+|+++||+|||||++|+++. .|+|+.|+||++||+||||||||||||+||||+|+| T Consensus 2 m~ls~fdf~LP~elIAq~P~~~Rd~sRLLVl~r~~g~--~i~h~~F~dl~~~L~~GDlLV~NdTkVipARL~g~k----- 74 (345) T 1wdi_A 2 EGLEAYDYHLPPEQIAQEGVEPRDMARLMVVYREGPF--RVAHKRVRDLPEFLRPGDVLVFNESKVIPARLLARK----- 74 (345) T ss_dssp CGGGGGCCCCCGGGBCSSCCSSGGGSEEEEECSSSSC--CEEEEEGGGHHHHCCTTCEEEEEEEEECCEEEEEEC----- T ss_pred CCHHHCCCCCCHHHHCCCCCCCCCCCEEEEEECCCCC--EEEECCHHHHHHHCCCCCEEEEECCEEEEEEEEEEE----- T ss_conf 9756769998959976899998611138999889998--576331623676479998999989989788999770----- Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCCCCCC---CEEEEEEECCCCCCEEEEECCCCCCHHHHHHHH Q ss_conf 77650589981124866101122115643698579970578874---069999603557724999726786300025442 Q gi|254780180|r 81 RREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQS---RLEATVIDKWNTGEILLVFSISGIELERQISLV 157 (360) Q Consensus 81 ~~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~~~~~~---~l~~~vi~~~~~g~~~i~f~~~~~~~~~~L~~~ 157 (360) .+|++||++++++++++.|.|++||+||+|+|+++.|.+..... .+.++++++.+.+.++..+. .++.++|+++ T Consensus 75 ~tg~~iEilll~~l~~~~w~~lv~p~kk~k~G~~l~~~~~~~~~~~~~l~a~v~~~~~~~~~~~~~~---~~~~~~l~~~ 151 (345) T 1wdi_A 75 PTGGKVEILLVRERSPGLWEALLGPARKAPPGTRLLLLSPKDLAPVPGLQAEVVAVEEDGVRLLRFQ---GDLVAHLEEV 151 (345) T ss_dssp TTSCEEEEEECBCC------CCBCCCSCCCSCEEEEECTTTTSCEEEEEEEECCCSSCC-------------CCEEESCC T ss_pred CCCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEEECCCCEEEEEC---CCHHHHHHHH T ss_conf 6897089998414576135421210567898988996377532212673799999706872798612---3168898875 Q ss_pred HCCCCCHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC Q ss_conf 03578522212345652114331013456757400555688789999999997215530378731656657887410135 Q gi|254780180|r 158 GTIPLPPYIARKRPIDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDD 237 (360) Q Consensus 158 G~iPLPPYI~r~r~~~~~D~~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~ 237 (360) |+|||||||+| +.|.+|||||||+++|||||||||||||++||++|++|||++++||||||+|||+||+ +++++ T Consensus 152 G~~PLPpYI~r-----~~d~e~YQTVyA~~~GsVAAPTAGLHFt~~ll~~l~~kGv~~a~iTLHVG~GTF~pv~-~di~~ 225 (345) T 1wdi_A 152 GEVPLPPYIKA-----KIPMERYQTVYARRPGSVAAPTAGLHFTPELLERLREMGVELRFLTLHVGPGTFRPVK-GDPEK 225 (345) T ss_dssp CSCC------------------------------CCCCGGGGCCHHHHHHHHHTTCEEEEEEEEESGGGCCC-------- T ss_pred CCCCCCCHHCC-----CCHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCC-CCCCC T ss_conf 47998810202-----4225667778616898552566877778999999997415056799962244446533-52235 Q ss_pred CCCCCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCH Q ss_conf 66770007785999999998753798099962878998999985289846888722366574096114312552775545 Q gi|254780180|r 238 HIMHSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPK 317 (360) Q Consensus 238 h~mH~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~~~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~ 317 (360) |+||+|||+||++|+++||+||++|||||||||||||||||+++.+|.+++++|||||||+|||+|++||+||||||+|| T Consensus 226 H~mh~E~~~i~~~ta~~i~~ak~~G~RviAVGTT~vRaLEsaa~~~g~l~~~~G~T~lfI~Pgy~fkvvD~LiTNFHlP~ 305 (345) T 1wdi_A 226 HEMHAEPYAIPEEVAEAVNRAKAEGRRVVAVGTTVVRALESAYREGVGVVAGEGETRLFIRPPYTFKVVDALFTNFHLPR 305 (345) T ss_dssp --CCCEEEEECHHHHHHHHHHHHTTCCEEEESHHHHHHHHHTEETTTEECCEEEEECCCCCSSCCCSSCSEEEEECCCTT T ss_pred CCCCCEEEEECHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCEECEEECCCCCCCCCCEEEECCCCCC T ss_conf 78776599982999999999997399489984689999999997289866778302459649997748187455684780 Q ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHCCCEEECCCCHHHCC Q ss_conf 7899999987198999999999998698261101022233 Q gi|254780180|r 318 STLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLF 357 (360) Q Consensus 318 Stll~Lv~Af~G~~~~~~~Y~~Ai~~~yrF~syGDamLi~ 357 (360) ||||||||||+|+++|+++|++||+++||||||||||||+ T Consensus 306 STllmLvsAFaG~e~~~~aY~~Ai~~~YrF~SyGDamLIl 345 (345) T 1wdi_A 306 STLLMLVAAFLGRERTLEAYRLAVAEGYRFYSLGDAMLIL 345 (345) T ss_dssp CHHHHHHHHHHCHHHHHHHHHHHHHTTCCBSTTSCEEEEC T ss_pred CHHHHHHHHHCCHHHHHHHHHHHHHCCCCEECCCHHHEEC T ss_conf 2999999995896999999999998798433313320219 No 2 >>1yy3_A S-adenosylmethionine:tRNA ribosyltransferase- isomerase; beta-barrel, QUEA, quein queuosine, tRNA- modification; 2.88A {Bacillus subtilis} (A:1-67,A:171-346) Probab=100.00 E-value=0 Score=769.15 Aligned_cols=238 Identities=49% Similarity=0.815 Sum_probs=231.8 Q ss_pred CCCCCCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCC Q ss_conf 98633588889778616998781203135663788875315310143478726988799994795688899876404677 Q gi|254780180|r 1 MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHIN 80 (360) Q Consensus 1 M~lsdfDy~LP~elIAq~P~~~Rd~SRLLV~~r~~~~~~~i~h~~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~ 80 (360) |++|+|||+||+|||||+|+++||+|||||++|+++ +|+|..|+||++||+|||||||||||| T Consensus 5 m~ls~fdf~LP~elIAq~P~~~Rd~sRLlVl~r~~g---~i~h~~F~dl~~~l~~gDllV~NdTkV-------------- 67 (243) T 1yy3_A 5 SKVDLFDFELPERLIAQVPLEQRDASRLMVLDKHTG---ELTDSSFKHIISFFNEGDCLVLNNTRV-------------- 67 (243) T ss_dssp ---CCSCCCCCTTTBCSSCCTTSTTSBEEECCTTTC---CCCCCBTTGGGGGCCTTEEEEECCCCS-------------- T ss_pred CCHHHCCCCCCHHHHCCCCCCCCCCCEEEEEECCCC---CEEEEEHHHHHHHCCCCCEEEEECCEE-------------- T ss_conf 724114889994897589999975242778988999---167765633686479998999989998-------------- Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHCC Q ss_conf 77650589981124866101122115643698579970578874069999603557724999726786300025442035 Q gi|254780180|r 81 RREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQSRLEATVIDKWNTGEILLVFSISGIELERQISLVGTI 160 (360) Q Consensus 81 ~~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~~~~~~~l~~~vi~~~~~g~~~i~f~~~~~~~~~~L~~~G~i 160 (360) T Consensus 68 -------------------------------------------------------------------------------- 67 (243) T 1yy3_A 68 -------------------------------------------------------------------------------- 67 (243) T ss_dssp -------------------------------------------------------------------------------- T ss_pred -------------------------------------------------------------------------------- T ss_conf -------------------------------------------------------------------------------- Q ss_pred CCCHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC Q ss_conf 78522212345652114331013456757400555688789999999997215530378731656657887410135667 Q gi|254780180|r 161 PLPPYIARKRPIDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIM 240 (360) Q Consensus 161 PLPPYI~r~r~~~~~D~~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~m 240 (360) |||+++|||||||||||||++||++|++|||++++||||||+|||+||++|++++|+| T Consensus 68 ----------------------VyAk~~GSVAAPTAGLHFt~~ll~~l~~kGv~~a~vTLHvG~gTF~pv~~e~i~~H~m 125 (243) T 1yy3_A 68 ----------------------VYSKEIGSAAAPTAGLHFTEEILQQLKDKGVQIEFITLHVGLGTFRPVSADEVEEHNM 125 (243) T ss_dssp ------------------------------CCCCSSTTCCCHHHHHHHHHHTEEEEECEEESGGGGGC-----------C T ss_pred ----------------------HHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCC T ss_conf ----------------------9730689832885655679999999998598599999863455445655543345788 Q ss_pred CCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHC-CCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCHHH Q ss_conf 700077859999999987537980999628789989999852-8984688872236657409611431255277554578 Q gi|254780180|r 241 HSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTE-DGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPKST 319 (360) Q Consensus 241 H~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~~-~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~St 319 (360) |+|||+||++|+++||+||++|+|||||||||+|+|||+++. +|.+++++|||||||+|||+|++||+||||||+|||| T Consensus 126 h~E~~~i~~~ta~~In~ak~~g~RiiAVGTT~~RaLEsa~~~~~g~~~~~~G~T~lfI~Pgy~f~vvD~LiTNFH~P~St 205 (243) T 1yy3_A 126 HAEFYQMSEETAAALNKVRENGGRIISVGTTSTRTLETIAGEHDGQFKASSGWTSIFIYPGYEFKAIDGMITNFHLPKSS 205 (243) T ss_dssp CCEEEEECHHHHHHHHHHHHTTCCEEEECTTTHHHHHHHHHTTTSCCCCEEEEECCCCCTTCCCSSCSEEEEECCCTTSS T ss_pred CCEEEEECHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCEECCCCCCCH T ss_conf 87389964999999999997499199970368999999986249960678863196977989776808765367277029 Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHCCCEEECCCCHHHCC Q ss_conf 99999987198999999999998698261101022233 Q gi|254780180|r 320 LLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLF 357 (360) Q Consensus 320 ll~Lv~Af~G~~~~~~~Y~~Ai~~~yrF~syGDamLi~ 357 (360) ||||||||+|+++|+++|++||+++||||||||||||+ T Consensus 206 llmLvsAFaG~~~~~~aY~~Ai~~~YRF~syGDamLIl 243 (243) T 1yy3_A 206 LIMLVSALAGRENILRAYNHAVEEEYRFFSFGDAMLII 243 (243) T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHTTCCBSSSSCEEEC- T ss_pred HHHHHHHHCCHHHHHHHHHHHHHCCCCEECCCHHHEEC T ss_conf 99999995897999999999998798502523210219 No 3 >>1vky_A S-adenosylmethionine:tRNA ribosyltransferase- isomerase; TM0574, structural genomics, JCSG, protein structure initiative, PSI; 2.00A {Thermotoga maritima} (A:1-76,A:174-347) Probab=100.00 E-value=0 Score=761.60 Aligned_cols=238 Identities=47% Similarity=0.782 Sum_probs=231.5 Q ss_pred CCCCCCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCC Q ss_conf 98633588889778616998781203135663788875315310143478726988799994795688899876404677 Q gi|254780180|r 1 MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHIN 80 (360) Q Consensus 1 M~lsdfDy~LP~elIAq~P~~~Rd~SRLLV~~r~~~~~~~i~h~~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~ 80 (360) |++|+|||+||+|||||+|+++||+|||||+||+++ +|.|+.|+||++||+||||||||||||| T Consensus 13 m~ls~fdf~LP~elIAq~P~~~Rd~sRLlVldr~~g---~i~h~~F~dl~~~l~~gDllV~NdTkVi------------- 76 (250) T 1vky_A 13 MKVSEFDYELPPELIAQEPVEPRDASRLMVLHRKTQ---RIEHRIFREIIEYLEPGDLLVLNVSKVI------------- 76 (250) T ss_dssp ---CTTCCCCCGGGBCSSCCSSGGGSEEEEEETTTT---EEEEEEGGGGGGGCCTTCEEEEEEEECC------------- T ss_pred EEHHHCCCCCCHHHHCCCCCCCCCCCEEEEEECCCC---CEEEEEHHHHHHHCCCCCEEEEECCEEE------------- T ss_conf 488783989895997689999964044889988999---2787567656864799989999799998------------- Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHCC Q ss_conf 77650589981124866101122115643698579970578874069999603557724999726786300025442035 Q gi|254780180|r 81 RREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQSRLEATVIDKWNTGEILLVFSISGIELERQISLVGTI 160 (360) Q Consensus 81 ~~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~~~~~~~l~~~vi~~~~~g~~~i~f~~~~~~~~~~L~~~G~i 160 (360) T Consensus 77 -------------------------------------------------------------------------------- 76 (250) T 1vky_A 77 -------------------------------------------------------------------------------- 76 (250) T ss_dssp -------------------------------------------------------------------------------- T ss_pred -------------------------------------------------------------------------------- T ss_conf -------------------------------------------------------------------------------- Q ss_pred CCCHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC Q ss_conf 78522212345652114331013456757400555688789999999997215530378731656657887410135667 Q gi|254780180|r 161 PLPPYIARKRPIDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIM 240 (360) Q Consensus 161 PLPPYI~r~r~~~~~D~~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~m 240 (360) |||+++|||||||||||||++||++|++|||++++||||||+|||+||++|+|++|+| T Consensus 77 ----------------------VyAk~~GsvAAPTAGLHFt~~ll~~l~~kGv~~~~iTLHvG~gTF~pv~~e~i~~H~m 134 (250) T 1vky_A 77 ----------------------VYAKEEGSVAAPTAGLHFTPELIEKLKKKGVQFAEVVLHVGIGTFRPVKVEEVEKHKM 134 (250) T ss_dssp ----------------------------------CGGGGCCHHHHHHHHHHTCEEEEEEEEC------------------ T ss_pred ----------------------HHHHHCCCEECCCCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCC T ss_conf ----------------------9764258543676886778999999998499268899997355565765542356787 Q ss_pred CCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCHHHH Q ss_conf 70007785999999998753798099962878998999985289846888722366574096114312552775545789 Q gi|254780180|r 241 HSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPKSTL 320 (360) Q Consensus 241 H~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~~~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~Stl 320 (360) |+|||+||++|+++||+||++|+|||||||||+|||||+++ +|.++++.|||||||+|||+|++||+||||||+|+||| T Consensus 135 h~E~~~I~~~ta~~i~~ak~~g~riiAVGTT~~RaLEsa~~-~g~~~~~~G~T~lfI~Pgy~fkvvd~LiTNFH~P~STL 213 (250) T 1vky_A 135 HEEFYQVPKETVRKLRETRERGNRIVAVGTTTVRTLETIAR-LPEQEEYVGKTDLFIYPPFEFKLVDALVTNFHLPRSTL 213 (250) T ss_dssp CCCEEEECHHHHHHHHHHHHHTCCEEEESHHHHHHHHHHTT-SCCCSSEEECCCCCCCSSCCCSSCSEEEEECCCTTCHH T ss_pred CCEEEEECHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHH-HCCCCCCCCCCCEEECCCCCCCEECCCEECCCCCCCHH T ss_conf 77299982999999999997199589984589999999987-42577767752469899998718186554683770399 Q ss_pred HHHHHHHHCHHHHHHHHHHHHHCCCEEECCCCHHHCC Q ss_conf 9999987198999999999998698261101022233 Q gi|254780180|r 321 LMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLF 357 (360) Q Consensus 321 l~Lv~Af~G~~~~~~~Y~~Ai~~~yrF~syGDamLi~ 357 (360) |||||||+|+++++++|++||+++||||||||||||+ T Consensus 214 lmLvsAFag~~~~~~aY~~Ai~~~YrF~syGDamLIl 250 (250) T 1vky_A 214 LMLVAAFAGKDFVMEAYREAVKRRYRFFSFGDAMLIL 250 (250) T ss_dssp HHHHHHHHCHHHHHHHHHHHHHTTCCBSTTSCEEEEC T ss_pred HHHHHHHCCHHHHHHHHHHHHHCCCCEECCCHHHEEC T ss_conf 9999984896999999999998799613424120219 No 4 >>1yy3_A S-adenosylmethionine:tRNA ribosyltransferase- isomerase; beta-barrel, QUEA, quein queuosine, tRNA- modification; 2.88A {Bacillus subtilis} (A:68-170) Probab=99.90 E-value=1.3e-23 Score=190.25 Aligned_cols=103 Identities=28% Similarity=0.503 Sum_probs=92.1 Q ss_pred EEEEEEEEEECCCCCCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCEEEEECCC Q ss_conf 88899876404677776505899811248661011221156436985799705788740699996035577249997267 Q gi|254780180|r 67 ITAQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQSRLEATVIDKWNTGEILLVFSIS 146 (360) Q Consensus 67 ipARL~g~k~~~~~~~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~~~~~~~l~~~vi~~~~~g~~~i~f~~~ 146 (360) |||||+|.|. ++|++||++++++++++.|.||+||+||+|+|++|.|.+. .+.++|+++.+.|.++++|+.+ T Consensus 1 ipARL~g~k~----~tG~~iEilll~~l~~~~w~~lvrp~kklk~G~~l~~~~~----~l~a~v~~~~~~g~~~~~f~~~ 72 (103) T 1yy3_A 1 LPARLFGTKE----DTGAKVELLLLKQETGDKWETLAKPAKRVKKGTVVTFGDG----RLKAICTEELEHGGRKMEFQYD 72 (103) T ss_dssp CCEEEEEEES----SSSCCEEEEEEEECSTTEEEEEETTGGGSCTTCEEEETTS----SSEEEEEEECTTSCEEEEEECS T ss_pred EEEEEEEEEC----CCCCEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCC----CEEEEEEEEECCCCEEEEECCC T ss_conf 8568997734----7884689987402468658999604555553129995377----2489999981588379997378 Q ss_pred CCCHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHHCC Q ss_conf 863000254420357852221234565211433101 Q gi|254780180|r 147 GIELERQISLVGTIPLPPYIARKRPIDARDYVDYQT 182 (360) Q Consensus 147 ~~~~~~~L~~~G~iPLPPYI~r~r~~~~~D~~~YQT 182 (360) + ++.++|+++|+|||||||+| + ++|.+|||| T Consensus 73 ~-~~~~~l~~~G~iPLPPYI~R--~--~~D~erYQT 103 (103) T 1yy3_A 73 G-IFYEVLESLGEMPLPPYIKE--Q--LDDKERYQT 103 (103) T ss_dssp S-CHHHHHHHHHTCCCCHHHHT--T--SSSCC---- T ss_pred C-CHHHHHHHCCCCCCCCCCCC--C--CCHHHHHHH T ss_conf 8-47999997189999933155--6--114999999 No 5 >>1vky_A S-adenosylmethionine:tRNA ribosyltransferase- isomerase; TM0574, structural genomics, JCSG, protein structure initiative, PSI; 2.00A {Thermotoga maritima} (A:77-173) Probab=99.87 E-value=1.4e-22 Score=182.84 Aligned_cols=97 Identities=30% Similarity=0.442 Sum_probs=88.2 Q ss_pred EEEEEEEEECCCCCCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCEEEEECCCC Q ss_conf 88998764046777765058998112486610112211564369857997057887406999960355772499972678 Q gi|254780180|r 68 TAQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQSRLEATVIDKWNTGEILLVFSISG 147 (360) Q Consensus 68 pARL~g~k~~~~~~~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~~~~~~~l~~~vi~~~~~g~~~i~f~~~~ 147 (360) ||||+|+| .+|++||++++++++++.|.||+||+|++|+|++|.|.+ .++++|+++.++|.++++|+.+ T Consensus 1 PARL~g~k-----~tG~~vEilll~~l~~~~w~~l~k~~k~~k~G~~l~~~~-----~~~~~v~~~~~~g~~~v~f~~~- 69 (97) T 1vky_A 1 PARLYARK-----KTGASIEILLIERLEEGIWKCLVRPGQKVKKGTELVIDE-----DLSAVCLGRGEDGTRILKFQPQ- 69 (97) T ss_dssp SCEEEEBC--------CCEEEEEEEEEETTEEEEEEESCTTCCTTCEEEEET-----TEEEEEEEECTTSCEEEEEESC- T ss_pred EEEEEEEE-----CCCCCEEEEEEEECCCCEEEEEECCCCCCCCCCEEEECC-----CCCEEEEEECCCCEEEEECCCC- T ss_conf 88999981-----334642047776426876999961665677886798527-----7406999861541367731675- Q ss_pred CCHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHHCC Q ss_conf 63000254420357852221234565211433101 Q gi|254780180|r 148 IELERQISLVGTIPLPPYIARKRPIDARDYVDYQT 182 (360) Q Consensus 148 ~~~~~~L~~~G~iPLPPYI~r~r~~~~~D~~~YQT 182 (360) ++++|+++|+|||||||+| +.|.+|||| T Consensus 70 --~~~~le~~G~iPLPPYI~r-----~~D~erYQT 97 (97) T 1vky_A 70 --DDRLIFEKGRTPLPPYIKN-----EVPLERYQT 97 (97) T ss_dssp --CHHHHHHHC------------------------ T ss_pred --CHHHHHHCCCCCCCCHHCC-----CCHHHHHHH T ss_conf --3577986599888932214-----315999999 No 6 >>2wbq_A L-arginine beta-hydroxylase; oxidoreductase, non-heme Fe(II) hydroxylase, cbeta- hydroxylation, L-arginine oxygenase, NRPS, viomycin; HET: ZZU; 1.10A {Streptomyces vinaceus} PDB: 2wbp_A* 2wbo_A* (A:1-202,A:296-358) Probab=87.04 E-value=0.78 Score=26.57 Aligned_cols=11 Identities=27% Similarity=0.613 Sum_probs=6.0 Q ss_pred CCCCCCCEEEE Q ss_conf 64369857997 Q gi|254780180|r 107 KVIKKGDILHF 117 (360) Q Consensus 107 kklk~G~~l~~ 117 (360) -+|++||.+.| T Consensus 206 ~~l~~gd~~~~ 216 (265) T 2wbq_A 206 LVLDQGDVAFI 216 (265) T ss_dssp EECCTTCEEEE T ss_pred EECCCCCEEEE T ss_conf 75089958999 No 7 >>1ds1_A Clavaminate synthase 1; oxygenase, trifunctional enzyme, oxidoreductase,lyase; HET: AKG; 1.08A {Streptomyces clavuligerus} (A:1-181,A:259-324) Probab=85.45 E-value=0.79 Score=26.55 Aligned_cols=20 Identities=20% Similarity=0.476 Sum_probs=15.4 Q ss_pred HCCCCCEEEEECCCEEEEEE Q ss_conf 26988799994795688899 Q gi|254780180|r 52 FLNSNDAIVFNNTKVITAQL 71 (360) Q Consensus 52 ~L~~gDLLV~NnTKVipARL 71 (360) .|+|||+++|||-+|+.+|= T Consensus 186 ~l~pGd~~~~dN~r~lHgR~ 205 (247) T 1ds1_A 186 YLEPGDLLIVDNFRTTHART 205 (247) T ss_dssp CCCTTCEEEEETTTEEEEEC T ss_pred ECCCCCEEEEECCEEEECCC T ss_conf 42899689997881136887 No 8 >>2og5_A Putative oxygenase; non-ribosomal peptide synthesis, iron(II)/alpha- ketoglutarate dependent hydroxylase, jelly-roll fold; 1.45A {Streptomyces coelicolor} PDB: 2og6_A 2og7_A* (A:) Probab=83.21 E-value=1.1 Score=25.43 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=12.9 Q ss_pred EEEHHHHHHHCCCCCEEEEECCCE Q ss_conf 101434787269887999947956 Q gi|254780180|r 43 DHLVSDLPAFLNSNDAIVFNNTKV 66 (360) Q Consensus 43 h~~F~dl~~~L~~gDLLV~NnTKV 66 (360) +..+..+.+.|..--++||.+.-+ T Consensus 84 ~~~~~~~~~~l~~~G~viirg~p~ 107 (357) T 2og5_A 84 RRDLAGFRRDSGPDGAIVLRGLPV 107 (357) T ss_dssp HHHHHHHHHCCTTTTEEEEECCCC T ss_pred HHHHHHHHHCCCCCCEEEECCCCC T ss_conf 999999974148872799889985 No 9 >>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular modeling; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A (A:159-198) Probab=66.69 E-value=2.9 Score=22.43 Aligned_cols=19 Identities=21% Similarity=0.600 Sum_probs=17.3 Q ss_pred CCCHHHHHHHHHHCCCCEE Q ss_conf 7899999999972155303 Q gi|254780180|r 199 HFTSNLLSRLISIGIKVYF 217 (360) Q Consensus 199 HFt~~ll~~L~~kGi~~~~ 217 (360) |||++++++.+++||+..| T Consensus 6 hf~~~~ikrc~~~~VesVf 24 (40) T 3im1_A 6 HFNNKILEKCKEINVETVY 24 (40) T ss_dssp TCCHHHHHHHHHTTCCSHH T ss_pred CCCHHHHHHHHHCCCCCHH T ss_conf 3789999999864479999 No 10 >>2iye_A Copper-transporting ATPase; hydrolase, P-type ATPase, CPX-ATPase, COPB, heavy metal translocation; 2.6A {Sulfolobus solfataricus} (A:1-39,A:139-263) Probab=64.27 E-value=5.6 Score=20.41 Aligned_cols=80 Identities=16% Similarity=0.242 Sum_probs=52.0 Q ss_pred CCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHEEEC-HHHHHHHHHHHHCCCEEEEECHHH- Q ss_conf 568878999999999721553037873165665788741013566770007785-999999998753798099962878- Q gi|254780180|r 195 TAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGFID-APTAQALNSVKSRGGRIVSVGTTS- 272 (360) Q Consensus 195 TAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~i~-~~~~~~I~~ak~~g~rIiAVGTT~- 272 (360) |--|.=..+.++.|++.|+++.-+| |-....-..--.+..++.=+..++ ++-.+.|+.-+.+|++|..||--. T Consensus 36 ~~~~P~a~e~I~~L~~~Gi~v~IiT-----GD~~~~a~~ia~~lgI~~v~a~v~p~~K~~iv~~L~~~g~~Va~VGDg~N 110 (164) T 2iye_A 36 TGTLPNLKDYLEKLKNEGLKIIILS-----GDKEDKVKELSKELNIQEYYSNLSPEDKVRIIEKLKQNGNKVLMIGDGVN 110 (164) T ss_dssp TTTTSCCHHHHHHHHGGGCEEEEEC-----SSCHHHHHHHHHHHTCSEEECSCCHHHHHHHHHHHHHTTCCEEEEECSTT T ss_pred CCCCCHHHHHHHHHHHCCCCEEEEC-----CCCCCCCHHHHHHHCHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEECCCC T ss_conf 8523129999999997599279823-----87421101479985302534023578898888455225605899942310 Q ss_pred -HHHHHHH Q ss_conf -9989999 Q gi|254780180|r 273 -LRLLETA 279 (360) Q Consensus 273 -~R~LEs~ 279 (360) +-+|..| T Consensus 111 D~~aL~~A 118 (164) T 2iye_A 111 DAAALALA 118 (164) T ss_dssp THHHHHHS T ss_pred HHHHHHHC T ss_conf 46688648 No 11 >>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.20A {Mus musculus} PDB: 3hlt_A (A:1-75,A:195-259) Probab=60.88 E-value=5.2 Score=20.68 Aligned_cols=43 Identities=21% Similarity=0.284 Sum_probs=36.1 Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE Q ss_conf 3310134567574005556887899999999972155303787 Q gi|254780180|r 178 VDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTL 220 (360) Q Consensus 178 ~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTL 220 (360) ++|..+|....|-+..-+--+.-+.++|++|+++|+.+..+|= T Consensus 5 ~~~~~~~~d~d~~l~~~~~~~pg~~e~L~~L~~~G~~~~iiTN 47 (140) T 2ho4_A 5 RALKAVLVDLNGTLHIEDAAVPGAQEALKRLRATSVXVRFVTN 47 (140) T ss_dssp -CCCEEEEESSSSSCC---CCTTHHHHHHHHHTSSCEEEEEEC T ss_pred CCCCEEEEECCCCEEECCCCCCCHHHHHHHHHHCCCCEEEEEC T ss_conf 5788999938994281990680099999999986998899948 No 12 >>1nx8_A CARC, carbapenem synthase; jelly roll, unknown function; HET: AKG N7P; 2.30A {Pectobacterium carotovorum} (A:1-153,A:210-273) Probab=60.03 E-value=9.1 Score=18.91 Aligned_cols=19 Identities=16% Similarity=0.258 Sum_probs=9.8 Q ss_pred HHHHHHCCCCCEEEEECCC Q ss_conf 3478726988799994795 Q gi|254780180|r 47 SDLPAFLNSNDAIVFNNTK 65 (360) Q Consensus 47 ~dl~~~L~~gDLLV~NnTK 65 (360) .+|-+.|-.--.+|+||-+ T Consensus 30 ~~~~~~~~~~~~~~~~~~~ 48 (217) T 1nx8_A 30 ETIKNLLMRQGFVVVKNLD 48 (217) T ss_dssp HHHHHHHHHHCEEEECSCC T ss_pred HHHHHHHHHCCEEEECCCC T ss_conf 9999999976899999999 No 13 >>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, ATP-binding cassette, cytoplasm; HET: ADP; 3.20A {Geobacillus stearothermophilus 10} (A:620-714,A:864-972) Probab=56.46 E-value=4.9 Score=20.86 Aligned_cols=72 Identities=29% Similarity=0.403 Sum_probs=43.8 Q ss_pred CCCCCCCCCC-------CCCCCCCCCCC-----HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHEEEC Q ss_conf 0134567574-------00555688789-----99999999721553037873165665788741013566770007785 Q gi|254780180|r 181 QTTYAKIQGS-------VAAPTAGLHFT-----SNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGFID 248 (360) Q Consensus 181 QTVyA~~~GS-------VAAPTAGLHFt-----~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~i~ 248 (360) |+-..+++-+ .-=||||||.. .++|.+|+++|..+..||.....= .. ..+..+ T Consensus 87 Q~~ig~npRa~~p~LliLDEPTsgLD~~~~~~l~~~L~~L~~~G~TVIiVtHdl~~i--------~~------aDrIiv- 151 (204) T 2r6f_A 87 QSPIGRTPRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVI--------KT------ADYIID- 151 (204) T ss_dssp SSCSCSSTTCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH--------TT------CSEEEE- T ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHH--------HH------CCEEEE- T ss_conf 775678866899918999898768879999999999999997699999991789999--------75------999999- Q ss_pred HHHHHHHHHHHHCCCEEEEECHHH Q ss_conf 999999998753798099962878 Q gi|254780180|r 249 APTAQALNSVKSRGGRIVSVGTTS 272 (360) Q Consensus 249 ~~~~~~I~~ak~~g~rIiAVGTT~ 272 (360) .-......||++++.||.. T Consensus 152 -----L~~~~~~~~G~ii~~G~~e 170 (204) T 2r6f_A 152 -----LGPEGGDRGGQIVAVGTPE 170 (204) T ss_dssp -----ECSSSTTSCCSEEEEESHH T ss_pred -----CCCCCCCCCCEEEEEECHH T ss_conf -----6887777893899985889 No 14 >>1a3w_A Pyruvate kinase; allosteric regulation, tranferase; HET: FBP; 3.00A {Saccharomyces cerevisiae} (A:89-187) Probab=54.91 E-value=15 Score=17.30 Aligned_cols=57 Identities=11% Similarity=0.043 Sum_probs=37.9 Q ss_pred EEHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCCCCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCC Q ss_conf 01434787269887999947956888998764046777765058998112486610112211564369857997057 Q gi|254780180|r 44 HLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQ 120 (360) Q Consensus 44 ~~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~~~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~~ 120 (360) -.+.+|.+.+++||.+.+.|-++ ++...+..++..+.|.+..++.++...-+.+++. T Consensus 40 v~~~~i~~~v~~Gd~IlidDG~i--------------------~l~V~~v~~~~~v~~~v~~~G~L~s~KgvnlPg~ 96 (99) T 1a3w_A 40 VDYKNITKVISAGRIIYVDDGVL--------------------SFQVLEVVDDKTLKVKALNAGKICSHKGVNLPGT 96 (99) T ss_dssp BSCTTHHHHCCTTCEEEETTTTE--------------------EEECCBCCC--CEEEEBCSCCCCCSSCBEECTTC T ss_pred ECCCCCCCCCCCCCEEEEECCCE--------------------EEEEEEECCCEEEEEEECCCEEECCCCCCCCCCC T ss_conf 32423100036771688635611--------------------4777541474145664035244025665567886 No 15 >>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, structural genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A (A:106-201) Probab=53.47 E-value=16 Score=17.14 Aligned_cols=76 Identities=14% Similarity=0.167 Sum_probs=41.6 Q ss_pred CCCCEEEEE-CCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCCCCCCEEEEEEECCCCCCCHHH Q ss_conf 120313566-3788875315310143478726988799994795688899876404677776505899811248661011 Q gi|254780180|r 23 RDSARLMVV-HPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHINRREKEISCTLHMRVSPNSWSV 101 (360) Q Consensus 23 Rd~SRLLV~-~r~~~~~~~i~h~~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~~~g~~ieill~~~~~~~~w~~ 101 (360) +...++.+. +....+....-.-.+.+|.+.+++||.+.++|-++. +.+ ...++..+.| T Consensus 16 ~~G~~v~l~~~~~~~~~~~~i~v~~~~l~~~v~~G~~IlidDG~i~--------------------l~V-~~v~~~~i~~ 74 (96) T 3gg8_A 16 QQGATLKIVTDYNLIGDETTIACSYGALPQSVKPGNTILIADGSLS--------------------VKV-VEVGSDYVIT 74 (96) T ss_dssp CTTCEEEEESCTTCCCCSSEEEBSCTTHHHHCCTTCEEEETTTTEE--------------------EEE-EEECSSEEEE T ss_pred CCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCEE--------------------EEE-EEECCEEEEE T ss_conf 6998899966876689866798732422124788988998068404--------------------888-8402105887 Q ss_pred HHHCCCCCCCCCEEEECC Q ss_conf 221156436985799705 Q gi|254780180|r 102 YARPSKVIKKGDILHFFS 119 (360) Q Consensus 102 l~kp~kklk~G~~l~~~~ 119 (360) .+..++.++...-+.|++ T Consensus 75 ~v~~~G~L~s~KgvnlPg 92 (96) T 3gg8_A 75 QAQNTATIGERKNMNLPN 92 (96) T ss_dssp EESSCEEECSSCBEECTT T ss_pred ECCCCEEECCCCCCCCCC T ss_conf 403560443530012222 No 16 >>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural genomics, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI-2; 1.72A {Homo sapiens} PDB: 2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A* (A:1-90,A:231-306) Probab=52.93 E-value=9.2 Score=18.85 Aligned_cols=43 Identities=21% Similarity=0.189 Sum_probs=36.9 Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE Q ss_conf 4331013456757400555688789999999997215530378 Q gi|254780180|r 177 YVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVT 219 (360) Q Consensus 177 ~~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iT 219 (360) .++|..+|....|.+.-.+.-+.=..++|++|+++|+.++-+| T Consensus 18 ~~~~~~~~~d~~~~~~~~~~~~~g~~e~L~~L~~~g~~~~ivT 60 (166) T 2oyc_A 18 LGRAQGVLFDCDGVLWNGERAVPGAPELLERLARAGKAALFVS 60 (166) T ss_dssp HHHCSEEEECSBTTTEETTEECTTHHHHHHHHHHTTCEEEEEE T ss_pred HHCCCEEEEECCCCEEECCCCCCHHHHHHHHHHHCCCCEEEEE T ss_conf 9679999996988128899168109999999997799889995 No 17 >>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* (A:1-107,A:397-493) Probab=52.14 E-value=7.7 Score=19.41 Aligned_cols=60 Identities=23% Similarity=0.351 Sum_probs=39.5 Q ss_pred CCCCCCCCCH-----HHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHEEECHHHHHHHHHHHHCCCEEEE Q ss_conf 5556887899-----99999997215530378731656657887410135667700077859999999987537980999 Q gi|254780180|r 193 APTAGLHFTS-----NLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGRIVS 267 (360) Q Consensus 193 APTAGLHFt~-----~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~~g~rIiA 267 (360) =||||||.-. ++|.+|+++|..+..||.+...= ...++. ..|. ..+-..+|+|++ T Consensus 118 EPTsgLDp~~~~~l~~~l~~L~~~G~TVI~VtHdl~~i--------~~ad~i-----i~i~-------~~~~~~~G~Iv~ 177 (204) T 2vf7_A 118 EPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVI--------RRADWL-----VDVG-------PEAGEKGGEILY 177 (204) T ss_dssp CTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHH--------TTCSEE-----EEEC-------SSSGGGCCSEEE T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHH--------HHHHEE-----EECC-------CCCEEECCEEEC T ss_conf 85355899999999999999860598189997678998--------632055-----7704-------773577325415 Q ss_pred ECHHH Q ss_conf 62878 Q gi|254780180|r 268 VGTTS 272 (360) Q Consensus 268 VGTT~ 272 (360) .||.. T Consensus 178 ~Gtpe 182 (204) T 2vf7_A 178 SGPPE 182 (204) T ss_dssp EECGG T ss_pred CCCHH T ss_conf 67878 No 18 >>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, ATP-binding, glycolysis, magnesium, metal-binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3ktx_A* 3e0w_A 3e0v_A (D:89-186) Probab=50.67 E-value=16 Score=17.13 Aligned_cols=55 Identities=7% Similarity=0.064 Sum_probs=30.4 Q ss_pred EHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCCCCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECC Q ss_conf 143478726988799994795688899876404677776505899811248661011221156436985799705 Q gi|254780180|r 45 LVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFS 119 (360) Q Consensus 45 ~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~~~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~ 119 (360) .+.+|.+.+++||.+-+.|-++ ++...+......+.|.+..+++++...-+.|++ T Consensus 40 ~~~~l~~~v~~G~~IlidDG~i--------------------~l~V~~v~~~~~v~~~v~~~G~L~s~KgvNlPg 94 (98) T 3hqn_D 40 DYQNLSKVVRPGNYIYIDDGIL--------------------ILQVQSHEDEQTLECTVTNSHTISDRRGVNLPG 94 (98) T ss_dssp SCTTHHHHCCTTCEEEETTTTE--------------------EEEEEEEEETTEEEEEECSCEEEETTCBEECTT T ss_pred CCHHHHHHCCCCCEEEECCCEE--------------------EEEEEEECCCCEEEEEEECCEEEECCCCCCCCC T ss_conf 5166686467899899818868--------------------999998638864999972785822797422589 No 19 >>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} (A:71-166) Probab=49.09 E-value=19 Score=16.67 Aligned_cols=80 Identities=4% Similarity=-0.013 Sum_probs=40.2 Q ss_pred CCCCCCCCEEEEE-CCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCCCCCCEEEEEEECCCCCC Q ss_conf 9878120313566-378887531531014347872698879999479568889987640467777650589981124866 Q gi|254780180|r 19 PVFPRDSARLMVV-HPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHINRREKEISCTLHMRVSPN 97 (360) Q Consensus 19 P~~~Rd~SRLLV~-~r~~~~~~~i~h~~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~~~g~~ieill~~~~~~~ 97 (360) |..-+...++-+. ++...+....-.-.+.+|.+.+++||.+.++|-++. +.+. ..+++ T Consensus 12 ~i~l~~G~~i~l~~~~~~~~~~~~i~v~~~~l~~~v~~G~~IlidDG~i~--------------------l~V~-~v~~~ 70 (96) T 1e0t_A 12 DVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIG--------------------MEVT-AIEGN 70 (96) T ss_dssp CEEECTTCEEEEESCTTCCBBTTEEEBSCTTHHHHCCTTCEEEETTTTEE--------------------EEEE-EEETT T ss_pred EEEECCCCEEEEEECCCCCCCCCEEECCHHHHHHHCCCCCEEEEECCEEE--------------------EEEE-ECCCC T ss_conf 68961899899981776689888885347898975679988999689899--------------------9999-54599 Q ss_pred CHHHHHHCCCCCCCCCEEEECC Q ss_conf 1011221156436985799705 Q gi|254780180|r 98 SWSVYARPSKVIKKGDILHFFS 119 (360) Q Consensus 98 ~w~~l~kp~kklk~G~~l~~~~ 119 (360) ...|.+..++.++...-+.+++ T Consensus 71 ~i~~~v~~~G~L~s~KgvnlPg 92 (96) T 1e0t_A 71 KVICKVLNNGDLGENKGVNLPG 92 (96) T ss_dssp EEEEEECSCEEECSSCEEECSS T ss_pred EEEEEEEECCEEECCCCEECCC T ss_conf 7999998282970787322589 No 20 >>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.40A {Thermotoga maritima} (A:1-85,A:212-271) Probab=47.96 E-value=13 Score=17.77 Aligned_cols=92 Identities=15% Similarity=0.078 Sum_probs=51.9 Q ss_pred CHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC--------CCCCCCC--HHE Q ss_conf 143310134567574005556887899999999972155303787316566578874101--------3566770--007 Q gi|254780180|r 176 DYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDT--------DDHIMHS--EIG 245 (360) Q Consensus 176 D~~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i--------~~h~mH~--E~~ 245 (360) -.++|+.++-...|-+.-=+.-+.=..+.|++|+++|++++.+|=.-+... ....+.+ .+..+.+ |-. T Consensus 13 ~~~~~~~~l~D~dgvl~~~~~~~pga~e~l~~L~~~G~~~~~vTN~~~~~~--~~~~~~l~~~gi~~~~d~i~~sp~~~i 90 (145) T 1vjr_A 13 VLDKIELFILDXDGTFYLDDSLLPGSLEFLETLKEKNKRFVFFTNNSSLGA--QDYVRKLRNXGVDVPDDAVVTSKERXA 90 (145) T ss_dssp GGGGCCEEEECCBTTTEETTEECTTHHHHHHHHHHTTCEEEEEESCTTSCH--HHHHHHHHHTTCCCCGGGEEEHGGGEE T ss_pred HHHCCCEEEEECCCEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCH--HHHHHHHHHCCCCCCCCEECCHCHHCC T ss_conf 997499999928784687993582099999999976997899458998999--999999985155665232345811035 Q ss_pred EECHHHHHHHHHHHHCCCEEEEEC Q ss_conf 785999999998753798099962 Q gi|254780180|r 246 FIDAPTAQALNSVKSRGGRIVSVG 269 (360) Q Consensus 246 ~i~~~~~~~I~~ak~~g~rIiAVG 269 (360) .|......-|.-|++-|-+.|.|- T Consensus 91 ~VGDs~~~Di~~A~~aG~~ti~v~ 114 (145) T 1vjr_A 91 XVGDRLYTDVKLGKNAGIVSILVL 114 (145) T ss_dssp EEESCHHHHHHHHHHHTCEEEEES T ss_pred CCCCCHHHHHHHHHHCCCCEEEEC T ss_conf 117781789999998799499989 No 21 >>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* (A:494-600,A:749-842) Probab=45.05 E-value=9 Score=18.95 Aligned_cols=72 Identities=28% Similarity=0.407 Sum_probs=43.6 Q ss_pred CCCCCCCCCC-CC-------CCCCCCCCCH-----HHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHEEE Q ss_conf 0134567574-00-------5556887899-----999999972155303787316566578874101356677000778 Q gi|254780180|r 181 QTTYAKIQGS-VA-------APTAGLHFTS-----NLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGFI 247 (360) Q Consensus 181 QTVyA~~~GS-VA-------APTAGLHFt~-----~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~i 247 (360) ||--.+++=| .+ =||||||... ++|.+|+++|..+..||.+...= ...||.+ .+ T Consensus 98 QtpIGr~prs~~~~~lliLDEPtsgLD~~~~~~l~~~l~~l~~~g~TVivvtH~l~~i--------~~aD~ii-----~l 164 (201) T 2vf7_A 98 QKPIGRTPRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVV--------AASDWVL-----DI 164 (201) T ss_dssp SSCSCSSTTCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH--------TTCSEEE-----EE T ss_pred CCCCCCCCHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH--------HHCCEEE-----EC T ss_conf 5678888023889978999899778879999999999999997799899990889999--------7589999-----87 Q ss_pred CHHHHHHHHHHHHCCCEEEEECHHH Q ss_conf 5999999998753798099962878 Q gi|254780180|r 248 DAPTAQALNSVKSRGGRIVSVGTTS 272 (360) Q Consensus 248 ~~~~~~~I~~ak~~g~rIiAVGTT~ 272 (360) .. .+-.++|+|++.||.. T Consensus 165 ~~-------g~~~~~G~iv~~Gtp~ 182 (201) T 2vf7_A 165 GP-------GAGEDGGRLVAQGTPA 182 (201) T ss_dssp CS-------SSGGGCCSEEEEECHH T ss_pred CC-------CCCCCCCEEEEEECHH T ss_conf 88-------7777893899983899 No 22 >>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1, possible sugar phosphatase, structural genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii} (A:1-83,A:206-284) Probab=43.26 E-value=18 Score=16.72 Aligned_cols=116 Identities=16% Similarity=0.149 Sum_probs=59.3 Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC--HHEEE---CHHH Q ss_conf 433101345675740055568878999999999721553037873165665788741013566770--00778---5999 Q gi|254780180|r 177 YVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHS--EIGFI---DAPT 251 (360) Q Consensus 177 ~~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~--E~~~i---~~~~ 251 (360) .++|+.++-...|-+..-+.=+.-..++|++|+++|+.++.+|=.-.. +..-+ .+.+..+-+.. +...+ .+.. T Consensus 11 ~~~~~~~~~d~dg~l~~~~~~~pg~~~~L~~L~~~g~~~~i~Tn~~~~-~~~~~-~~~l~~~g~~~~f~~~~~s~~~KP~ 88 (162) T 2hx1_A 11 LPKYKCIFFDAFGVLKTYNGLLPGIENTFDYLKAQGQDYYIVTNDASR-SPEQL-ADSYHKLGLFSITADKIISSDSQXF 88 (162) T ss_dssp GGGCSEEEECSBTTTEETTEECTTHHHHHHHHHHTTCEEEEEECCCSS-CHHHH-HHHHHHTTCTTCCGGGEEEHSSHHH T ss_pred HHCCCEEEEECCCCCEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCC-CHHHH-HHHHHCCCCCCCCHHEEECCCHHHH T ss_conf 961999999187801739984831999999999869958999689998-76999-9885402444533103752262888 Q ss_pred HHHHHHHHH----CCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCC Q ss_conf 999998753----798099962878998999985289846888722366574096 Q gi|254780180|r 252 AQALNSVKS----RGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPGYR 302 (360) Q Consensus 252 ~~~I~~ak~----~g~rIiAVGTT~~R~LEs~~~~~~~~~~~~g~T~lfI~Pg~~ 302 (360) ...+..+-+ ...+++-||-..-.=++.|.. .|+..+.|.+|.. T Consensus 89 ~~~~~~~~~~~~~~~~~~l~VgD~~~~Di~~A~~--------~G~~~i~v~~~~~ 135 (162) T 2hx1_A 89 XFAYDXLRQKXEISKREILXVGDTLHTDILGGNK--------FGLDTALVLTGNT 135 (162) T ss_dssp HHHHHHHHTTSCCCGGGEEEEESCTTTHHHHHHH--------HTCEEEEESSSSS T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHH--------CCCCEEEECCCCC T ss_conf 9899887650599835499993880799999998--------7998999899999 No 23 >>3hvb_A Protein FIMX; EAL phosphodiesterase, biofilm, C-DI-GMP, hydrolase; 2.99A {Pseudomonas aeruginosa PAO1} (A:) Probab=37.81 E-value=27 Score=15.48 Aligned_cols=85 Identities=9% Similarity=-0.006 Sum_probs=62.9 Q ss_pred CCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHEE------ECHHHHHHHHHHHHCCCEEEEECHH Q ss_conf 8789999999997215530378731656657887410135667700077------8599999999875379809996287 Q gi|254780180|r 198 LHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGF------IDAPTAQALNSVKSRGGRIVSVGTT 271 (360) Q Consensus 198 LHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~------i~~~~~~~I~~ak~~g~rIiAVGTT 271 (360) ..-..+.+++|++.|+.++-=-.-.|.++|..+..-.++--|++..+.. -..-....+.-++..|-.|||=|-- T Consensus 321 ~~~~~~~~~~l~~~G~~~~iddfg~~~~~~~~l~~l~~d~iKld~~~~~~~~~~~~~~~~~~~~~~a~~~~~~viaegVe 400 (437) T 3hvb_A 321 LKQAKQLTQGLATLHCQAAISQFGCSLNPFNALKHLTVQFIKIDGSFVQDLNQVENQEILKGLIAELHEQQKLSIVPFVE 400 (437) T ss_dssp HHHHHHHHHHHHHTTCEEEEEEETCSSSHHHHHTTSCCSEEEECGGGSSCCSSHHHHHHHHHHHHHHHHTTCEEEECCCC T ss_pred HHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHCCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEECCC T ss_conf 23332345555554200120368988644999971899999989899851488637999999999999859958995689 Q ss_pred HHHHHHHHHHC Q ss_conf 89989999852 Q gi|254780180|r 272 SLRLLETATTE 282 (360) Q Consensus 272 ~~R~LEs~~~~ 282 (360) +...++.+..- T Consensus 401 ~~~~~~~l~~~ 411 (437) T 3hvb_A 401 SASVLATLWQA 411 (437) T ss_dssp SHHHHHHHHHH T ss_pred CHHHHHHHHHC T ss_conf 39999999976 No 24 >>3khd_A Pyruvate kinase; malaria, structural genomics, structural genomics consortium, SGC; 2.70A {Plasmodium falciparum 3D7} (A:116-210) Probab=35.18 E-value=30 Score=15.20 Aligned_cols=54 Identities=17% Similarity=0.226 Sum_probs=32.3 Q ss_pred EHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCCCCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECC Q ss_conf 143478726988799994795688899876404677776505899811248661011221156436985799705 Q gi|254780180|r 45 LVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFS 119 (360) Q Consensus 45 ~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~~~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~ 119 (360) .+.++.+.+++||.+.++|-++ ++.+. ..+++...|.+..++.++...-+.+++ T Consensus 38 ~~~~l~~~v~~G~~IlidDG~i--------------------~l~V~-~v~~~~i~~~v~~~G~L~s~KginlPg 91 (95) T 3khd_A 38 SYKKLPQSVKPGNIILIADGSV--------------------SCKVL-ETHEDHVITEVLNSAVIGERKNMNLPN 91 (95) T ss_dssp SCTTHHHHCCC-CEEEETTTTE--------------------EEEEE-EECSSCEEEEECC-CCCCSSCEEECTT T ss_pred ECHHHHHCCCCCCEEEEECCCC--------------------EEEEE-ECCCCEEEEEEECCCEECCCCEEECCC T ss_conf 0302342168998899837960--------------------79999-726870689992096846885585167 No 25 >>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, PSI, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus dsm 3638} (A:) Probab=33.83 E-value=29 Score=15.27 Aligned_cols=66 Identities=21% Similarity=0.263 Sum_probs=36.1 Q ss_pred CCCCCCCEEEECCCCCCCCEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHHCCCCCC Q ss_conf 64369857997057887406999960355772499972678630002544203578522212345652114331013456 Q gi|254780180|r 107 KVIKKGDILHFFSQDGQSRLEATVIDKWNTGEILLVFSISGIELERQISLVGTIPLPPYIARKRPIDARDYVDYQTTYAK 186 (360) Q Consensus 107 kklk~G~~l~~~~~~~~~~l~~~vi~~~~~g~~~i~f~~~~~~~~~~L~~~G~iPLPPYI~r~r~~~~~D~~~YQTVyA~ 186 (360) +++++||.|.|.+ .+.++|.+.. +| .++.++++..|--=+=|=. ++-+.-.+.|...|.+ T Consensus 33 ~~ik~GD~I~F~~-----~l~v~V~~i~-------~Y----~sF~~ll~~e~~~~v~p~~----~siee~~~~~~~~Y~~ 92 (113) T 1xne_A 33 KDIKRGDKIIFND-----LIPAEVVEVK-------KY----ETFRQVLREEPIDKIFPDK----PSFEKALKRFHNMYPK 92 (113) T ss_dssp TTCCTTCEEEETT-----TEEEEEEEEE-------EC----SSHHHHHHHSCHHHHCSSC----CCHHHHHHHHTTSSSS T ss_pred HHCCCCCEEEEEC-----CEEEEEEEEE-------EC----CCHHHHHHHCCHHHHCCCC----CCHHHHHHHHHHHCCH T ss_conf 6189999999930-----1899998999-------83----9999999864987618999----9899999999967899 Q ss_pred ----CCCCCC Q ss_conf ----757400 Q gi|254780180|r 187 ----IQGSVA 192 (360) Q Consensus 187 ----~~GSVA 192 (360) +.|.+| T Consensus 93 ekE~~~GVla 102 (113) T 1xne_A 93 WKEYRYGVLA 102 (113) T ss_dssp SCCCCCCCEE T ss_pred HHHHHCCEEE T ss_conf 8987548899 No 26 >>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric enzyme, alternative splicing, glycolysis, magnesium, metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo sapiens} PDB: 3gqy_A* 3h6o_A* 1zjh_A 3g2g_A 1t5a_A* 3bjt_A 3bjf_A* 1f3x_A 1f3w_A 1a49_A* 1a5u_A* 1aqf_A* 1pkm_A 2g50_A* 1pkn_A 2vgb_A* 2vgf_A* 2vgg_A* 2vgi_A* (A:137-236) Probab=33.61 E-value=31 Score=15.03 Aligned_cols=54 Identities=2% Similarity=-0.029 Sum_probs=31.1 Q ss_pred EHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCCCCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECC Q ss_conf 143478726988799994795688899876404677776505899811248661011221156436985799705 Q gi|254780180|r 45 LVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFS 119 (360) Q Consensus 45 ~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~~~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~ 119 (360) .+.++.+.+++||.+-++|-++. +.+ ...++....|.+..+++++...-+.+++ T Consensus 43 ~~~~l~~~v~~G~~IlidDG~i~--------------------l~V-~~v~~~~i~~~v~~~G~L~s~KgvnlPg 96 (100) T 3gr4_A 43 DYKNICKVVEVGSKIYVDDGLIS--------------------LQV-KQKGADFLVTEVENGGSLGSKKGVNLPG 96 (100) T ss_dssp SCTTHHHHCCTTCEEEETTTTEE--------------------EEE-EEECSSEEEEEEEECEEECSSCBEECTT T ss_pred ECCCCHHHCCCCCHHEEECCCEE--------------------EEE-EECCCCCEEEEEECCCEECCCCCCCEEE T ss_conf 00013000343102101056316--------------------887-4036771279981483746666764100 No 27 >>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} (A:) Probab=33.55 E-value=32 Score=15.02 Aligned_cols=78 Identities=9% Similarity=0.082 Sum_probs=44.0 Q ss_pred CHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCHHHHHHHHHHH Q ss_conf 59999999987537980999628789989999852898468887223665740961143125527755457899999987 Q gi|254780180|r 248 DAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPKSTLLMLVSAF 327 (360) Q Consensus 248 ~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~~~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~Stll~Lv~Af 327 (360) ++++.+.++.+|+.|.+||+|--.. -.+....+|+-|+.+..-.....-...+..+-.+++.++..+ T Consensus 102 t~~~~~~~~~ak~~g~~vi~IT~~~-------------~s~l~~~ad~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (200) T 1vim_A 102 TTSVVNISKKAKDIGSKLVAVTGKR-------------DSSLAKMADVVMVVKGKMKQERDEILSQLAPLGTMFELTAMI 168 (200) T ss_dssp CHHHHHHHHHHHHHTCEEEEEESCT-------------TSHHHHHCSEEEECCSSCTTCCHHHHHHHSGGGHHHHHHHHH T ss_pred CHHHHHHHHHHHHHCCCCEEEEECC-------------CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHH T ss_conf 0237999999986235643664035-------------544323366799966886422233223706540799999999 Q ss_pred HCHHHHHHHHHH Q ss_conf 198999999999 Q gi|254780180|r 328 CGIEETKKMYQH 339 (360) Q Consensus 328 ~G~~~~~~~Y~~ 339 (360) .+ +.+...+.. T Consensus 169 ~~-~~~~~~~~~ 179 (200) T 1vim_A 169 FL-DALVAEIMM 179 (200) T ss_dssp HH-HHHHHHHHH T ss_pred HH-HHHHHHHHH T ss_conf 99-999999999 No 28 >>2bo9_A Carboxypeptidase A4; metallocarboxypeptidase, X-RAY endogenous protein inhibitor, metalloprotease carboxypeptidase, hydrolase; HET: NAG; 1.6A {Homo sapiens} (A:) Probab=33.50 E-value=32 Score=15.02 Aligned_cols=125 Identities=21% Similarity=0.257 Sum_probs=61.5 Q ss_pred HHHHCCCCEEEEEECCCCCC-CCCCCCCCCCCCCCCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCCC Q ss_conf 99721553037873165665-78874101356677000778599999999875379809996287899899998528984 Q gi|254780180|r 208 LISIGIKVYFVTLHVGAGTF-MPVKVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGII 286 (360) Q Consensus 208 L~~kGi~~~~iTLHVG~GTF-~Pi~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~~~~~~ 286 (360) +.++.--..++++|-|.+.. -|-. ..-..+.-+.+...+....++.+....... .-+|.. -..+ +...|.. T Consensus 182 ~~~~~~~~~~i~~Hs~~~~i~yp~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~-~~~~---Y~~~G~~ 253 (308) T 2bo9_A 182 IQKHGNFKGFIDLHSYSQLLMYPYG-YSVKKAPDAEELDKVARLAAKALASVSGTE---YQVGPT-CTTV---YPASGSS 253 (308) T ss_dssp HHHHCCEEEEEEEEESSSEEEESCS-SCSSCCTTHHHHHHHHHHHHHHHHHHHCCC---CEEEEH-HHHT---CCCCSCH T ss_pred HHHCCCCEEEEEEECCCCEEEECCC-CCCCCCCCHHHHHHHHHHHHHHHHHHCCCC---CCCCCC-CCCC---CCCCCCH T ss_conf 8742780399998228855860677-886679898999999999999999851977---645657-5622---0678858 Q ss_pred CCCCCCCCEEECCCCCCEEEEEEEECCCCCHHHHHHHH-HHHHCHHHHHHHHHHHHHCCC Q ss_conf 68887223665740961143125527755457899999-987198999999999998698 Q gi|254780180|r 287 NPWSGFTNIFITPGYRFRAVDILMSNFHLPKSTLLMLV-SAFCGIEETKKMYQHAISHAY 345 (360) Q Consensus 287 ~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~Stll~Lv-~Af~G~~~~~~~Y~~Ai~~~y 345 (360) ..|. -+..+.++|-+.+-|.--.+|++|.+.+.-++ ..+.| ++..-+.+.++-| T Consensus 254 ~Dw~--y~~~~~~~~T~El~~~g~~gf~~p~~~i~~~~~e~~~~---i~~~~~~i~~~~~ 308 (308) T 2bo9_A 254 IDWA--YDNGIKFAFTFELRDTGTYGFLLPANQIIPTAEETWLG---LKTIMEHVRDNLY 308 (308) T ss_dssp HHHH--HHTTCCEEEEEEESCSSSSTTCCCGGGHHHHHHHHHHH---HHHHHHHHHTTCC T ss_pred HHHH--HHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHCCC T ss_conf 8877--54599379999968898788619989978899999999---9999999985589 No 29 >>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein, structural genomics, PSI, protein structure initiative; 2.80A {Enterococcus faecalis V583} (A:1-74,A:185-264) Probab=33.43 E-value=17 Score=16.96 Aligned_cols=99 Identities=13% Similarity=0.206 Sum_probs=47.1 Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCC--CCCCC-CCC--CCCHHEEE-CHHHH Q ss_conf 31013456757400555688789999999997215530378731656657887--41013-566--77000778-59999 Q gi|254780180|r 179 DYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVK--VEDTD-DHI--MHSEIGFI-DAPTA 252 (360) Q Consensus 179 ~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~--~~~i~-~h~--mH~E~~~i-~~~~~ 252 (360) +||.++..-.|-+.-=.--+.-+.+.|++|+++|+.+..+|=--. ..++ .+.+. +.. .....+.- ..+.. T Consensus 4 ~~~~~~~D~DGtl~~~~~~~p~~~e~l~~L~~~Gi~~~i~Tn~~~----~~~~~~~~~l~~~~~~~~~~~~~~kp~p~~~ 79 (154) T 1yv9_A 4 DYQGYLIDLDGTIYLGKEPIPAGKRFVERLQEKDLPFLFVTNNTT----KSPETVAQRLANEFDIHVPASLVYTAKAIIM 79 (154) T ss_dssp SCCEEEECCBTTTEETTEECHHHHHHHHHHHHTTCCEEEEECCCS----SCHHHHHHHHHHHSCCCCCGGGEEEHSHHHH T ss_pred CCCEEEEECCCCEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCC----CCHHHHHHHHHHHCCCCCCCCCCCCHHHHHH T ss_conf 788999918992084998381399999999977997899938999----9879999999875075533120477816778 Q ss_pred H-HHHHHHHCCCEEEEECHHHHHHHHHHHH Q ss_conf 9-9998753798099962878998999985 Q gi|254780180|r 253 Q-ALNSVKSRGGRIVSVGTTSLRLLETATT 281 (360) Q Consensus 253 ~-~I~~ak~~g~rIiAVGTT~~R~LEs~~~ 281 (360) + .+....-...+++.||-....-++.|.. T Consensus 80 ~~~~~~~~~~~~~~~~vgdd~~~Di~~A~~ 109 (154) T 1yv9_A 80 ERAIAHLGVEKEQVIMVGDNYETDIQSGIQ 109 (154) T ss_dssp HHHHHHHCSCGGGEEEEESCTTTHHHHHHH T ss_pred HHHHHHHCCCCCEEEEECCCHHHHHHHHHH T ss_conf 788998489845499989962789999998 No 30 >>1w91_A Beta-xylosidase; MAD, seMet, tetramer, hydrolase; 2.2A {Geobacillus stearothermophilus} (A:199-326) Probab=33.24 E-value=23 Score=15.99 Aligned_cols=31 Identities=23% Similarity=0.253 Sum_probs=22.4 Q ss_pred CCCCCC-CCCHHHHHHHHHHCCCCEEEEEECC Q ss_conf 555688-7899999999972155303787316 Q gi|254780180|r 193 APTAGL-HFTSNLLSRLISIGIKVYFVTLHVG 223 (360) Q Consensus 193 APTAGL-HFt~~ll~~L~~kGi~~~~iTLHVG 223 (360) |=|||- +|+++.|+-.++.++.+.||.+|.= T Consensus 1 ~~~~~~~~w~~~fl~~~~~~~~p~DFig~n~Y 32 (128) T 1w91_A 1 AICGGSDEWITDFLHFCAERRVPVDFVSRHAY 32 (128) T ss_dssp EECSSCTHHHHHHHHHHHHTTCCCCEEEEEEE T ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEC T ss_conf 46778731248999999835997777997205 No 31 >>1omh_A TRWC protein; protein-DNA complex, bacterial conjugation, relaxase, DNA replication, transferase/DNA complex; HET: DNA; 1.95A {Escherichia coli} (A:1-223) Probab=31.92 E-value=14 Score=17.45 Aligned_cols=25 Identities=16% Similarity=0.376 Sum_probs=16.6 Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCEE Q ss_conf 5556887899999999972155303 Q gi|254780180|r 193 APTAGLHFTSNLLSRLISIGIKVYF 217 (360) Q Consensus 193 APTAGLHFt~~ll~~L~~kGi~~~~ 217 (360) ++.+|-.|-.+|.+.|++.|+++.. T Consensus 189 ~~~~~~~y~~~L~~~L~~lG~~~~~ 213 (223) T 1omh_A 189 TRYLGAVYNAELAHELQKLGYQLRY 213 (223) T ss_dssp HHHHHHHHHHHHHHHHHHTTCCEEE T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEE T ss_conf 9999999999999999975858764 No 32 >>1pca_A Procarboxypeptidase A PCPA; hydrolase(C-terminal peptidase); HET: CIT; 2.00A {Sus scrofa} (A:) Probab=29.82 E-value=13 Score=17.83 Aligned_cols=103 Identities=20% Similarity=0.280 Sum_probs=59.9 Q ss_pred CEEEEEECCCCC-CCCC--CCCCCCCCCCCCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 303787316566-5788--7410135667700077859999999987537980999628789989999852898468887 Q gi|254780180|r 215 VYFVTLHVGAGT-FMPV--KVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSG 291 (360) Q Consensus 215 ~~~iTLHVG~GT-F~Pi--~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~~~~~~~~~~g 291 (360) .++|++|-+..- +-|- +.+.. .-+.|...+....+.+|.+.. +.-..+|+-+ ..| +...|....|.. T Consensus 285 ~~~i~~HSyg~~il~P~g~~~~~~---~~~~~l~~~~~~~a~ai~~~~---g~~Y~~g~~~-~~l---Y~~~G~s~Dw~y 354 (403) T 1pca_A 285 KAFISIHSYSQLLLYPYGYKTQSP---ADKSELNQIAKSAVAALKSLY---GTSYKYGSII-TVI---YQASGGVIDWTY 354 (403) T ss_dssp -------------------------------------------------------------------------------- T ss_pred EEEEEECCCCCEEEECCCCCCCCC---CCHHHHHHHHHHHHHHHHHHH---CCCCCCCCCC-CCC---CCCCCCHHHHHC T ss_conf 799995378976883677877799---899999999999999988862---9877548865-634---247766777753 Q ss_pred CCCEEECCCCCCEEEEEEEECCCCCHHHHHH-HHHHHHC Q ss_conf 2236657409611431255277554578999-9998719 Q gi|254780180|r 292 FTNIFITPGYRFRAVDILMSNFHLPKSTLLM-LVSAFCG 329 (360) Q Consensus 292 ~T~lfI~Pg~~f~~vd~LiTNFH~P~Stll~-Lv~Af~G 329 (360) . ..|...|.+.+-|.--.+|++|.|...- --..|+| T Consensus 355 ~--~~~~~s~t~EL~d~g~~gF~lP~~~I~~~~~E~~~~ 391 (403) T 1pca_A 355 N--QGIKYSFSFELRDTGRRGFLLPASQIIPTAQETWLA 391 (403) T ss_dssp --------------------------------------- T ss_pred C--CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 1--799389999975898899789999999999999999 No 33 >>3dnp_A Stress response protein YHAX; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.85A {Bacillus subtilis} (A:1-85,A:201-290) Probab=29.72 E-value=24 Score=15.92 Aligned_cols=40 Identities=23% Similarity=0.255 Sum_probs=15.3 Q ss_pred HCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHCCCCEEEE Q ss_conf 1013456757400555688-789999999997215530378 Q gi|254780180|r 180 YQTTYAKIQGSVAAPTAGL-HFTSNLLSRLISIGIKVYFVT 219 (360) Q Consensus 180 YQTVyA~~~GSVAAPTAGL-HFt~~ll~~L~~kGi~~~~iT 219 (360) |+-+|....|..-.+..-+ --+.++|++|+++|+.+..+| T Consensus 6 ik~i~~DiDgTl~~~~~~i~~~~~e~l~~l~~~Gi~~~ivT 46 (175) T 3dnp_A 6 KQLLALNIDGALLRSNGKIHQATKDAIEYVKKKGIYVTLVT 46 (175) T ss_dssp CCEEEECCCCCCSCTTSCCCHHHHHHHHHHHHTTCEEEEBC T ss_pred CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEC T ss_conf 77899988888448969419999999999997899999989 No 34 >>3i1m_B 30S ribosomal protein S2; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_B* 3e1a_B 3e1c_B 1vs5_B 3i1o_B 3i1q_B 3i1s_B 3i1z_B 3i21_B 2qal_B* 1p87_B 2aw7_B 2avy_B 2i2u_B 2i2p_B* 2qan_B* 2qb9_B* 2qbb_B* 2qbd_B 2qbf_B ... (B:46-241) Probab=29.42 E-value=26 Score=15.60 Aligned_cols=20 Identities=10% Similarity=0.122 Sum_probs=10.4 Q ss_pred HHHHHHHHHHHCCCEEEEEC Q ss_conf 99999998753798099962 Q gi|254780180|r 250 PTAQALNSVKSRGGRIVSVG 269 (360) Q Consensus 250 ~~~~~I~~ak~~g~rIiAVG 269 (360) +...+|++|..-|-+|||+- T Consensus 123 ~~~~ai~Ea~~l~IPvI~iv 142 (196) T 3i1m_B 123 HEHIAIKEANNLGIPVFAIV 142 (196) T ss_dssp GGHHHHHHHHHHTCCEEEEC T ss_pred CCHHHHHHHHHCCCCEEEEC T ss_conf 10899999997599767523 No 35 >>2q7t_A Protein TRAI, DNA helicase I; relaxase, hydrolase, conjugation; HET: TMP; 2.42A {Escherichia coli} PDB: 2q7u_A* 2a0i_A 1p4d_A (A:1-248) Probab=29.20 E-value=37 Score=14.53 Aligned_cols=27 Identities=15% Similarity=0.225 Sum_probs=22.2 Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCEEE Q ss_conf 055568878999999999721553037 Q gi|254780180|r 192 AAPTAGLHFTSNLLSRLISIGIKVYFV 218 (360) Q Consensus 192 AAPTAGLHFt~~ll~~L~~kGi~~~~i 218 (360) +++.+|..+..+|-++|++.|+++... T Consensus 192 ~~~~~g~~y~~~La~~l~~lGy~~~~~ 218 (248) T 2q7t_A 192 NQIAFGRLYREKLKEQVEALGYETEVV 218 (248) T ss_dssp THHHHHHHHHHHHHHHHHHTTCCCEEC T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEE T ss_conf 999999999999999999759764650 No 36 >>2hbw_A NLP/P60 protein; YP_323898.1, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics; HET: UNL; 1.05A {Anabaena variabilis atcc 29413} PDB: 2evr_A 2fg0_A (A:86-235) Probab=29.06 E-value=37 Score=14.51 Aligned_cols=13 Identities=23% Similarity=0.416 Sum_probs=5.9 Q ss_pred CCCCCCCCEEEEC Q ss_conf 5643698579970 Q gi|254780180|r 106 SKVIKKGDILHFF 118 (360) Q Consensus 106 ~kklk~G~~l~~~ 118 (360) ...+++||.+.|. T Consensus 73 ~~~~~pGDlif~~ 85 (150) T 2hbw_A 73 IDELAPGDLVFFG 85 (150) T ss_dssp GGGCCTTCEEEEE T ss_pred HHHCCCCCEEEEC T ss_conf 6782578888857 No 37 >>2o7i_A Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein; periplasmic binding protein, cellulose, thermophilic proteins; HET: CBI; 1.50A {Thermotoga maritima} PDB: 2o7j_A* 3i5o_A* (A:30-167,A:562-592) Probab=27.54 E-value=23 Score=15.98 Aligned_cols=111 Identities=14% Similarity=0.188 Sum_probs=57.0 Q ss_pred CCCCCHHHHHHCCCCCCCCCEEEEC----------CCCC-C--C-CEEEEEEECCCCCCEEEEECCCCCCHHHHHH-HHH Q ss_conf 4866101122115643698579970----------5788-7--4-0699996035577249997267863000254-420 Q gi|254780180|r 94 VSPNSWSVYARPSKVIKKGDILHFF----------SQDG-Q--S-RLEATVIDKWNTGEILLVFSISGIELERQIS-LVG 158 (360) Q Consensus 94 ~~~~~w~~l~kp~kklk~G~~l~~~----------~~~~-~--~-~l~~~vi~~~~~g~~~i~f~~~~~~~~~~L~-~~G 158 (360) .++..|..-+|++-+|..|..+.-. +... . . .-...-++..++..+.+.|..+...+...+. ..+ T Consensus 35 ~d~~t~tf~LR~gv~fsDG~piTAeDV~~s~~~~~~~~~~~~~~~~~~i~~ve~~dd~tv~i~l~~p~~~~~~~l~~~~~ 114 (169) T 2o7i_A 35 VDDKTLRIYIRPEARWSDGVPITADDFVYALELTKELGIGPGGGWDTYIEYVKAVDTKVVEFKAKEENLNYFQFLSYSLG 114 (169) T ss_dssp EETTEEEEEECTTCBCTTSCBCCHHHHHHHHHHHHHHTCSTTTTHHHHEEEEEEEETTEEEEEECSTTCCHHHHHHHHHT T ss_pred CCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHCEEEEECCCCEEEEEECCCCCHHHHHHHCCCC T ss_conf 59978999938959928989926999999999986058886311233025999857968999965788036555312311 Q ss_pred CCCCCHHHCCCCCCCCCCHHHHCCCCC-CCCCCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 357852221234565211433101345-67574005556887899999999972 Q gi|254780180|r 159 TIPLPPYIARKRPIDARDYVDYQTTYA-KIQGSVAAPTAGLHFTSNLLSRLISI 211 (360) Q Consensus 159 ~iPLPPYI~r~r~~~~~D~~~YQTVyA-~~~GSVAAPTAGLHFt~~ll~~L~~k 211 (360) -+|+|--+..+-. +..+...-+--.. -.+|.++.||| .+++.|.+. T Consensus 115 ~~ilpk~~~e~~~-~~~~~~~~~~P~~~~~~~~~~~~~~------~~~~~~~~~ 161 (169) T 2o7i_A 115 AQPMPKHVYERIR-AQMNIKDWINDLGTVDEGGIEIPTA------KIFEDLQKA 161 (169) T ss_dssp CCCCCHHHHHHHH-HHSCGGGCCCCCSBCC-CCSBEEHH------HHHHHHHHT T ss_pred CCCCCHHHHHHCC-CHHCCCCCCCCCCCCCCCCEEEEHH------HHHHHHHHH T ss_conf 2247187776312-1001222222315100474662078------999999887 No 38 >>2i9e_A Triosephosphate isomerase; 2.00A {Tenebrio molitor} (A:) Probab=27.51 E-value=31 Score=15.03 Aligned_cols=132 Identities=17% Similarity=0.219 Sum_probs=71.2 Q ss_pred HCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCH----HEEECHHHHHHH Q ss_conf 1013456757400555688789999999997215530378731656657887410135667700----077859999999 Q gi|254780180|r 180 YQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSE----IGFIDAPTAQAL 255 (360) Q Consensus 180 YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E----~~~i~~~~~~~I 255 (360) =|.|+....|+--- +.+.++|.. -|++.+.| | ||| +.+.++...+++ T Consensus 62 AQnv~~~~~Ga~TG-----evS~~~L~d---~G~~~vli----G-----------------HSERR~~f~Etd~~i~~Kv 112 (259) T 2i9e_A 62 AQNCYKVPKGAFTG-----EISPAMIKD---VGADWVIL----G-----------------HSERRQIFGESDELIAEKV 112 (259) T ss_dssp ESCCCSSSSBSCTT-----CCCHHHHHH---TTCCEEEE----S-----------------CHHHHHTSCCCHHHHHHHH T ss_pred EEECCCCCHHHHHH-----HHHHHHHHH---CCCCCEEC----C-----------------CHHCCCCCCCCCHHHHHHH T ss_conf 22111211034565-----654999987---08530220----2-----------------4310310004668888999 Q ss_pred HHHHHCC-CEEEEECHHHH-H----HHHHHHHCC-CCCCCCCCCCCEEE--CCCCCCEEEEEEEECCCCCHHHHHHHHHH Q ss_conf 9875379-80999628789-9----899998528-98468887223665--74096114312552775545789999998 Q gi|254780180|r 256 NSVKSRG-GRIVSVGTTSL-R----LLETATTED-GIINPWSGFTNIFI--TPGYRFRAVDILMSNFHLPKSTLLMLVSA 326 (360) Q Consensus 256 ~~ak~~g-~rIiAVGTT~~-R----~LEs~~~~~-~~~~~~~g~T~lfI--~Pg~~f~~vd~LiTNFH~P~Stll~Lv~A 326 (360) ..+.+.| ..|+|||.|.. | +.+.+..+. ..+.....+.++.| -|.+-.. |+= .|.....--+.+ T Consensus 113 ~~al~~gl~pIiCVGE~~~~r~~~~~~~~~~~q~~~~~~~~~~~~~~iIAYEPvwAIG------tg~-~as~~~i~~v~~ 185 (259) T 2i9e_A 113 CHALESGLKVIACIGETLEEREAGKTEEVVFRQTKAIAAKVNDWSNVVIAYEPVWAIG------TGK-TATPQQAQDVHK 185 (259) T ss_dssp HHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHCSCCTTEEEEECCGGGTT------SSS-CCCHHHHHHHHH T ss_pred HHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHC------CCC-CCCCHHHHHHHH T ss_conf 9998677856999457532332012221687777653022234456799856477505------676-666145677888 Q ss_pred HHCHHHHHHHHHHHHHCCCEEE Q ss_conf 7198999999999998698261 Q gi|254780180|r 327 FCGIEETKKMYQHAISHAYRFY 348 (360) Q Consensus 327 f~G~~~~~~~Y~~Ai~~~yrF~ 348 (360) ++ |+.+.+.|...+..+.|.+ T Consensus 186 ~I-r~~l~~~~~~~~~~~v~Il 206 (259) T 2i9e_A 186 AL-RQWICENIDAKVGNSIRIQ 206 (259) T ss_dssp HH-HHHHHHHTCHHHHHHCEEE T ss_pred HH-HHHHHHCCCHHHCCCCCEE T ss_conf 99-9888630145453678688 No 39 >>1wui_S Periplasmic [NIFE] hydrogenase small subunit; high resolution [NIFE]hydrogenase, oxidoreductase, NI-A state, unready state; HET: NFC; 1.04A {Desulfovibrio vulgaris str} (S:1-180) Probab=26.47 E-value=41 Score=14.20 Aligned_cols=62 Identities=13% Similarity=0.134 Sum_probs=38.7 Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHEEECH-HHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 5530378731656657887410135667700077859-999999987537980999628789989999852898468887 Q gi|254780180|r 213 IKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGFIDA-PTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSG 291 (360) Q Consensus 213 i~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~i~~-~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~~~~~~~~~~g 291 (360) -.-++|.+=-|.=| .+|+..|+.+.. ...+.+.+++.+-+-|||||| |+...|....... T Consensus 66 ~~~~diliVeG~v~-----------~~~~~~~~~~~~~~~~e~~~~~~~~ak~vVA~Gt--------CA~~GGi~a~~~~ 126 (180) T 1wui_S 66 SPHGFIAVVEGGIP-----------TAANGIYGKVANHTMLDICSRILPKAQAVIAYGT--------CATFGGVQAAKPN 126 (180) T ss_dssp CTTCEEEEEESBEE-----------CGGGGTTBEETTEEHHHHHHHHGGGSSEEEEESH--------HHHHCCGGGSTTC T ss_pred CCCCEEEEEECCCC-----------CCCCCCEEEECCCHHHHHHHHHHHCCCEEEEEEC--------CHHCCCCCCCCCC T ss_conf 56775999836776-----------7665302444780499999998404988999842--------0202796556799 Q ss_pred CC Q ss_conf 22 Q gi|254780180|r 292 FT 293 (360) Q Consensus 292 ~T 293 (360) .| T Consensus 127 ~t 128 (180) T 1wui_S 127 PT 128 (180) T ss_dssp TT T ss_pred CC T ss_conf 76 No 40 >>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural genomics, NPPSFA; 2.20A {Pyrococcus horikoshii OT3} (A:1-14,A:100-235) Probab=26.45 E-value=32 Score=15.00 Aligned_cols=74 Identities=15% Similarity=0.089 Sum_probs=38.4 Q ss_pred HHHHHHHHHHCCCCEEEEE--------------ECCCCC-CCC-CCCCCCCCCCCCCHHEEECHHHHHHHHHHHHCCCEE Q ss_conf 9999999972155303787--------------316566-578-874101356677000778599999999875379809 Q gi|254780180|r 202 SNLLSRLISIGIKVYFVTL--------------HVGAGT-FMP-VKVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGRI 265 (360) Q Consensus 202 ~~ll~~L~~kGi~~~~iTL--------------HVG~GT-F~P-i~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~~g~rI 265 (360) .++|++|+++|++++=+|= +.|+.- |.- +.++++...|-|.+.|. ..+.+..-...++ T Consensus 20 ~e~L~~L~~~G~~l~i~TN~~~~~~~~~~~~l~~~gl~~~fd~i~~~~~~~~~KP~~~~~~------~~~~~~~~~p~~~ 93 (150) T 2om6_A 20 KEALQFVKERGLKTAVIGNVXFWPGSYTRLLLERFGLXEFIDKTFFADEVLSYKPRKEXFE------KVLNSFEVKPEES 93 (150) T ss_dssp HHHHHHHHHTTCEEEEEECCCSSCHHHHHHHHHHTTCGGGCSEEEEHHHHTCCTTCHHHHH------HHHHHTTCCGGGE T ss_pred HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH------HHHHHHCCCCCCC T ss_conf 9999999871881433115776628999999876400222223334334466674157777------8999960333224 Q ss_pred EEECHHHHHHHHHHHH Q ss_conf 9962878998999985 Q gi|254780180|r 266 VSVGTTSLRLLETATT 281 (360) Q Consensus 266 iAVGTT~~R~LEs~~~ 281 (360) +.||-+...=+++|.. T Consensus 94 i~VGD~~~~Di~~A~~ 109 (150) T 2om6_A 94 LHIGDTYAEDYQGARK 109 (150) T ss_dssp EEEESCTTTTHHHHHH T ss_pred EEECCCCHHHHHHHHH T ss_conf 0443672866999998 No 41 >>3hv8_A Protein FIMX; EAL phosphodiesterase, biofilm, C-DI-GMP, hydrolase; HET: C2E; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 3hv9_A (A:) Probab=26.31 E-value=41 Score=14.18 Aligned_cols=83 Identities=8% Similarity=-0.031 Sum_probs=60.3 Q ss_pred CHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHEEEC-----HHHH-HHHHHHHHCCCEEEEECHHHHH Q ss_conf 999999999721553037873165665788741013566770007785-----9999-9999875379809996287899 Q gi|254780180|r 201 TSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGFID-----APTA-QALNSVKSRGGRIVSVGTTSLR 274 (360) Q Consensus 201 t~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~i~-----~~~~-~~I~~ak~~g~rIiAVGTT~~R 274 (360) ..+.+..|++.|+.++-=-.--|.+.|.-+..-.+.--+++..+..-- ...+ ..+.-++..|-+|||-|-.+.. T Consensus 155 ~~~~~~~l~~~G~~laldd~g~~~~~~~~l~~l~~~~ikid~~~~~~~~~~~~~~~~~~~~~~a~~~~~~via~gVe~~~ 234 (268) T 3hv8_A 155 AKQLTQGLATLHCQAAISQFGCSLNPFNALKHLTVQFIKIDGSFVQDLNQVENQEILKGLIAELHEQQKLSIVPFVESAS 234 (268) T ss_dssp HHHHHHHHHHTTCEEEEEEETCSSSTTGGGGTCCCSEEEECGGGGSSTTSHHHHHHHHHHHHHHHHTTCEEEECCCCSHH T ss_pred HHHHHHHHHHHHCEEEEECCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEECCCHH T ss_conf 88888777654200354048887663667777777786326888864300200679999999999849968999379499 Q ss_pred HHHHHHHCC Q ss_conf 899998528 Q gi|254780180|r 275 LLETATTED 283 (360) Q Consensus 275 ~LEs~~~~~ 283 (360) .++.+...+ T Consensus 235 ~~~~l~~~G 243 (268) T 3hv8_A 235 VLATLWQAG 243 (268) T ss_dssp HHHHHHHHT T ss_pred HHHHHHHCC T ss_conf 999999769 No 42 >>1wde_A Probable diphthine synthase; structural genomics, conserved hypothetical protein, riken structural genomics/proteomics initiative, RSGI; 2.00A {Aeropyrum pernix} (A:1-120) Probab=26.24 E-value=21 Score=16.22 Aligned_cols=107 Identities=14% Similarity=0.060 Sum_probs=59.0 Q ss_pred CCCCEEEECCCCCCCCEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHHCCCCC-CCC Q ss_conf 6985799705788740699996035577249997267863000254420357852221234565211433101345-675 Q gi|254780180|r 110 KKGDILHFFSQDGQSRLEATVIDKWNTGEILLVFSISGIELERQISLVGTIPLPPYIARKRPIDARDYVDYQTTYA-KIQ 188 (360) Q Consensus 110 k~G~~l~~~~~~~~~~l~~~vi~~~~~g~~~i~f~~~~~~~~~~L~~~G~iPLPPYI~r~r~~~~~D~~~YQTVyA-~~~ 188 (360) +.|......-+.+...++.+..+.......++........+.+.+....+.+-..+..+. .+....+..+-+.. ... T Consensus 6 ~~g~l~~VG~GpG~~~lT~~a~~~L~~ad~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 83 (120) T 1wde_A 6 EAVTLLLVGWGYAPGXQTLEALDAVRRADVVYVESYTXPGSSWLYKSVVEAAGEARVVEA--SRRDLEERSREIVSRALD 83 (120) T ss_dssp CCCEEEEEECBSSTTCCCHHHHHHHHHCSEEEEECSSSTTCHHHHHHHHHHHTSSSEEEC--CHHHHHTSHHHHTCCSSC T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCC--CCCCHHHHHHHHHHHHHC T ss_conf 761899999647950788999999986999999067772453332656776167623245--535599999999999737 Q ss_pred CCCCCCCCCCCC--C--HHHHHHHHHHCCCCEEE Q ss_conf 740055568878--9--99999999721553037 Q gi|254780180|r 189 GSVAAPTAGLHF--T--SNLLSRLISIGIKVYFV 218 (360) Q Consensus 189 GSVAAPTAGLHF--t--~~ll~~L~~kGi~~~~i 218 (360) |-|+.-+.|=.+ + ..+++.+++.|+++.-| T Consensus 84 ~~V~~l~~GDP~iy~~~~~l~~~~~~~g~~v~vi 117 (120) T 1wde_A 84 AVVAVVTAGDPXVATTHSSLAAEALEAGVAVRYI 117 (120) T ss_dssp CEEEEEESBCTTSSSSHHHHHHHHHHTTCEEEEE T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEC T ss_conf 9959996689864543999999998458967980 No 43 >>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} (A:1-56,A:196-286) Probab=26.10 E-value=42 Score=14.15 Aligned_cols=16 Identities=25% Similarity=0.530 Sum_probs=14.0 Q ss_pred EEEEECHHHHHHHHHH Q ss_conf 0999628789989999 Q gi|254780180|r 264 RIVSVGTTSLRLLETA 279 (360) Q Consensus 264 rIiAVGTT~~R~LEs~ 279 (360) +.+|+|-|+.|+||+. T Consensus 102 K~~aiGptt~ral~a~ 117 (147) T 1jr2_A 102 KFAAIGPTTARALAAQ 117 (147) T ss_dssp EEEESSHHHHHHHHHT T ss_pred EEEEECHHHHHHHHHC T ss_conf 9999999999999976 No 44 >>3knz_A Putative sugar binding protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.50A {Salmonella enterica subsp} (A:34-182) Probab=25.87 E-value=42 Score=14.13 Aligned_cols=42 Identities=12% Similarity=0.024 Sum_probs=25.5 Q ss_pred CHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCC Q ss_conf 5999999998753798099962878998999985289846888722366574096 Q gi|254780180|r 248 DAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPGYR 302 (360) Q Consensus 248 ~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~~~~~~~~~~g~T~lfI~Pg~~ 302 (360) ++++.+.++.+|++|-++|+|- +..-.+.....|+.|+.+.. T Consensus 77 t~~~~~~~~~ak~~g~~~i~iT-------------~~~~s~l~~~ad~~i~~~~~ 118 (149) T 3knz_A 77 SLSTLAAXERARNVGHITASXA-------------GVAPATIDRAADYILTVPCG 118 (149) T ss_dssp CHHHHHHHHHHHHTTCEEEEEE-------------SSSSCGGGGGCSEECCCCCC T ss_pred CHHHHHHHHHHHHHHHHHCCCC-------------CCCCCHHHHCCCCHHCCCCC T ss_conf 8899999987665202202578-------------87862766304500114434 No 45 >>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} (A:1-127) Probab=25.87 E-value=42 Score=14.13 Aligned_cols=20 Identities=10% Similarity=0.132 Sum_probs=11.2 Q ss_pred HHHHH-HCCCCCCCCCEEEEC Q ss_conf 01122-115643698579970 Q gi|254780180|r 99 WSVYA-RPSKVIKKGDILHFF 118 (360) Q Consensus 99 w~~l~-kp~kklk~G~~l~~~ 118 (360) |.-++ +-...+++|+.+.+. T Consensus 62 ~~~~~~~f~~~l~~G~vy~I~ 82 (127) T 1jmc_A 62 FNEQVDKFFPLIEVNKVYYFS 82 (127) T ss_dssp EHHHHHHHGGGCCTTCEEEEE T ss_pred ECCCCHHCCCCEECCCEEEEC T ss_conf 044300001113047399988 No 46 >>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, ATP-binding cassette, cytoplasm; HET: ADP; 3.20A {Geobacillus stearothermophilus 10} (A:1-115,A:523-619) Probab=25.51 E-value=42 Score=14.10 Aligned_cols=61 Identities=25% Similarity=0.288 Sum_probs=38.2 Q ss_pred CCCCCCCCC-----CHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHEEECHHHHHHHHHHHHCCCEEE Q ss_conf 055568878-----999999999721553037873165665788741013566770007785999999998753798099 Q gi|254780180|r 192 AAPTAGLHF-----TSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGRIV 266 (360) Q Consensus 192 AAPTAGLHF-----t~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~~g~rIi 266 (360) -=||+||.- -.++|.+|+++|+.+..||.....- .++.|.. .| .+.+.-++|||+ T Consensus 124 DEPtsgLDp~~~~~i~~li~~l~~~g~Tii~vTHdl~ea-------~~i~Dri------vv-------~~~ail~~G~iv 183 (212) T 2r6f_A 124 DEPSIGLHQRDNDRLIATLKSXRDLGNTLIVVEHDEDTX-------LAADYLI------DI-------GPGAGIHGGEVV 183 (212) T ss_dssp ECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHH-------HSCSEEE------EE-------CSSSGGGCCSEE T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHHH-------HHHCEEE------EE-------CCCCEEEEECCC T ss_conf 583145689999999999999997597489972428898-------6531223------32-------277168642313 Q ss_pred EECHHH Q ss_conf 962878 Q gi|254780180|r 267 SVGTTS 272 (360) Q Consensus 267 AVGTT~ 272 (360) +.||+- T Consensus 184 ~~Gt~~ 189 (212) T 2r6f_A 184 AAGTPE 189 (212) T ss_dssp EEECTT T ss_pred CCCCHH T ss_conf 148999 No 47 >>2nlz_A Cephalosporin acylase; structural genomics, protein structure initiative, PSI, nysgxrc; 2.70A {Bacillus halodurans} (A:470-507) Probab=24.46 E-value=44 Score=13.95 Aligned_cols=18 Identities=22% Similarity=0.421 Sum_probs=15.3 Q ss_pred CCCHHHHHHHHHHCCCCE Q ss_conf 789999999997215530 Q gi|254780180|r 199 HFTSNLLSRLISIGIKVY 216 (360) Q Consensus 199 HFt~~ll~~L~~kGi~~~ 216 (360) +|.+++++.|+.+|+++. T Consensus 15 ~~p~~i~~~L~~rGH~I~ 32 (38) T 2nlz_A 15 TFPVDIAQALVRRGHKIQ 32 (38) T ss_dssp TSCHHHHHHHHHTTCEEE T ss_pred CCCHHHHHHHHHCCCEEE T ss_conf 999999999998699138 No 48 >>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} (A:1-215,A:280-317) Probab=23.85 E-value=45 Score=13.91 Aligned_cols=48 Identities=29% Similarity=0.479 Sum_probs=32.3 Q ss_pred HCCCCCCCCCC--CCCCCCCCCCCHHHHHHHHHHCC-CCEEEEEECCCCCCCCCCC Q ss_conf 10134567574--00555688789999999997215-5303787316566578874 Q gi|254780180|r 180 YQTTYAKIQGS--VAAPTAGLHFTSNLLSRLISIGI-KVYFVTLHVGAGTFMPVKV 232 (360) Q Consensus 180 YQTVyA~~~GS--VAAPTAGLHFt~~ll~~L~~kGi-~~~~iTLHVG~GTF~Pi~~ 232 (360) ..+-|-...|+ .-||. -+.|+.+++.-|. .+.++-||||+..|.-|.+ T Consensus 201 ~~~rfvp~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (253) T 1dl5_A 201 LETRFITAGGNLGNLAPE-----IENLLTQWESCGYRSFEYLMLHVGYNAFSHISC 251 (253) T ss_dssp EECCCCBCCGGGSCHCHH-----HHHHHHHHHHTTTCCGGGSEEEEESSSCCEEEC T ss_pred CEEEEEECCCCCCCCCHH-----HHHHHHHHHHCCCCCHHHCCEEEECCEEEEEEE T ss_conf 307999655874544589-----999999999759987455571870573589987 No 49 >>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydrolase., PSI-2; 1.55A {Streptococcus agalactiae serogroup V} PDB: 1ys9_A 1wvi_A 1ydf_A (A:1-73,A:184-264) Probab=23.83 E-value=31 Score=15.05 Aligned_cols=100 Identities=15% Similarity=0.128 Sum_probs=51.3 Q ss_pred HCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCC-CHHEEE--CHHHHHH-H Q ss_conf 10134567574005556887899999999972155303787316566578874101356677-000778--5999999-9 Q gi|254780180|r 180 YQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMH-SEIGFI--DAPTAQA-L 255 (360) Q Consensus 180 YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH-~E~~~i--~~~~~~~-I 255 (360) |+.|+-...|-..--+--..=+.+.|++|+++|++++.+|=--|-. . +.-.+.+...-+. .....+ .++.... + T Consensus 5 ~k~i~~D~Dgtl~~~~~~~~~~~e~l~~l~~~G~~~~i~Tn~s~~~-~-~~~~~~l~~lgi~~~~~~~~~~~p~~~~~~~ 82 (154) T 3epr_A 5 YKGYLIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRT-P-ESVQEMLRGFNVETPLETIYTANAIIMNKAL 82 (154) T ss_dssp CCEEEECCBTTTEETTEECHHHHHHHHHHHHHTCCEEEEECCCSSC-H-HHHHHHHHTTTCCCCGGGEEEHSHHHHHHHH T ss_pred CCEEEECCCCCEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCC-H-HHHHHHHHHCCCCCCHHHCCCHCHHHHHHHH T ss_conf 8999993878328799828259999999998799889993899999-9-9999987531655431210235205666555 Q ss_pred HHHHHCCCEEEEECHHHHHHHHHHHH Q ss_conf 98753798099962878998999985 Q gi|254780180|r 256 NSVKSRGGRIVSVGTTSLRLLETATT 281 (360) Q Consensus 256 ~~ak~~g~rIiAVGTT~~R~LEs~~~ 281 (360) .+......+++-||=...--++.|.+ T Consensus 83 ~~~~~~~~~~~~VgD~~~~Di~~A~~ 108 (154) T 3epr_A 83 EILNIPRNQAVMVGDNYLTDIMAGIN 108 (154) T ss_dssp HHHTSCGGGEEEEESCTTTHHHHHHH T ss_pred HHHCCCCCCEEEEECCCHHHHHHHHH T ss_conf 65326866089997995799999998 No 50 >>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1, methyltransferase domain, structural genomics; HET: MSE; 1.60A {Mesorhizobium loti MAFF303099} (A:1-151,A:194-243) Probab=23.78 E-value=46 Score=13.86 Aligned_cols=79 Identities=20% Similarity=0.138 Sum_probs=52.7 Q ss_pred CCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC----CCCCCHHEEECHHHHHHHHHHHHCCCEEE------ Q ss_conf 88789999999997215530378731656657887410135----66770007785999999998753798099------ Q gi|254780180|r 197 GLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDD----HIMHSEIGFIDAPTAQALNSVKSRGGRIV------ 266 (360) Q Consensus 197 GLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~----h~mH~E~~~i~~~~~~~I~~ak~~g~rIi------ 266 (360) |.-+++++++..+++ ..-..+++.++-.+-.|...+..+= +.+ ++..=+....+.+.+.-+.||+++ T Consensus 71 gvDiS~~~i~~a~~~-~~~~~i~~~~~D~~~~~~~~~~fD~V~~~~~L--~~l~d~~~~L~ei~rvLkPGG~lils~~~p 147 (201) T 3bkw_A 71 GLDLSEKXLARARAA-GPDTGITYERADLDKLHLPQDSFDLAYSSLAL--HYVEDVARLFRTVHQALSPGGHFVFSTEHP 147 (201) T ss_dssp EEESCHHHHHHHHHT-SCSSSEEEEECCGGGCCCCTTCEEEEEEESCG--GGCSCHHHHHHHHHHHEEEEEEEEEEEECH T ss_pred CCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEE--EECCCHHHHHHHHHHHHCCCCEEEEEECCC T ss_conf 445432222222222-22222222222222222222320023554114--414799999999999719997799997478 Q ss_pred ---EECHHHHHHHHH Q ss_conf ---962878998999 Q gi|254780180|r 267 ---SVGTTSLRLLET 278 (360) Q Consensus 267 ---AVGTT~~R~LEs 278 (360) +||||.--.+-| T Consensus 148 ~~~~~~~~~~~~~~~ 162 (201) T 3bkw_A 148 IYXAVGTTLNALIRS 162 (201) T ss_dssp HHHCHHHHHHHHHHT T ss_pred CCCCHHHHHHHHHHC T ss_conf 742499999999987 No 51 >>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (D:184-271) Probab=23.66 E-value=22 Score=16.21 Aligned_cols=10 Identities=10% Similarity=0.498 Sum_probs=3.9 Q ss_pred CHHHHHHHHH Q ss_conf 3000254420 Q gi|254780180|r 149 ELERQISLVG 158 (360) Q Consensus 149 ~~~~~L~~~G 158 (360) ++...|.++| T Consensus 50 ~~m~~l~~lg 59 (88) T 3bbo_D 50 DMMAKVASLG 59 (88) T ss_dssp SSHHHHGGGG T ss_pred HHHHHHHHHH T ss_conf 4555553431 No 52 >>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus} (A:72-167) Probab=23.23 E-value=47 Score=13.79 Aligned_cols=81 Identities=7% Similarity=0.052 Sum_probs=38.2 Q ss_pred CCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCCCCCCEEEEEEE-CCCCCC Q ss_conf 9878120313566378887531531014347872698879999479568889987640467777650589981-124866 Q gi|254780180|r 19 PVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHINRREKEISCTLH-MRVSPN 97 (360) Q Consensus 19 P~~~Rd~SRLLV~~r~~~~~~~i~h~~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~~~g~~ieill~-~~~~~~ 97 (360) |..-+...++-+.-....+....-.-.+.+|.+.+++||-+-+.|-++ ++.+. ...+.. T Consensus 11 ~i~l~~G~~v~l~~~~~~~~~~~i~v~~~~l~~~v~~Gd~IlidDG~i--------------------~l~v~~v~~~~~ 70 (96) T 2e28_A 11 AIELKEGSKLVISMSEVLGTPEKISVTYPSLIDDVSVGAKILLDDGLI--------------------SLEVNAVDKQAG 70 (96) T ss_dssp CBCCCSSCEEEEESSCCCCCSSEEEBSCTTSTTTCCTTCEEEETTTTE--------------------EEEEEEEETTTT T ss_pred EEEECCCCEEEEECCCCCCCCCEEEECCHHHHHHCCCCCEEEEECCCC--------------------EEEEEEEECCCC T ss_conf 289558999999678868975689704278786557998677642653--------------------499988604420 Q ss_pred CHHHHHHCCCCCCCCCEEEECC Q ss_conf 1011221156436985799705 Q gi|254780180|r 98 SWSVYARPSKVIKKGDILHFFS 119 (360) Q Consensus 98 ~w~~l~kp~kklk~G~~l~~~~ 119 (360) .+.|.+..++.++...-+.|++ T Consensus 71 ~v~~~v~~~G~l~s~KgvnlPg 92 (96) T 2e28_A 71 EIVTTVLNGGVLKNKKGVNVPG 92 (96) T ss_dssp EEEEECCSCCCBCSSCBEECTT T ss_pred EEEEEECCCEEECCCCCEECCC T ss_conf 7999950141644998266389 No 53 >>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} (A:1-276) Probab=22.76 E-value=35 Score=14.67 Aligned_cols=31 Identities=23% Similarity=0.333 Sum_probs=25.2 Q ss_pred CCCCCCCCC-----HHHHHHHHHHCCCCEEEEEECC Q ss_conf 555688789-----9999999972155303787316 Q gi|254780180|r 193 APTAGLHFT-----SNLLSRLISIGIKVYFVTLHVG 223 (360) Q Consensus 193 APTAGLHFt-----~~ll~~L~~kGi~~~~iTLHVG 223 (360) =|||||-.. .++|.+|+++|..+..+|.+.. T Consensus 184 EPtsgLD~~~~~~i~~~l~~L~~~g~tIiiisHdl~ 219 (276) T 1yqt_A 184 EPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA 219 (276) T ss_dssp STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCHHH T ss_conf 312368999999999998876542010542120189 No 54 >>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* (C:) Probab=22.64 E-value=30 Score=15.20 Aligned_cols=64 Identities=17% Similarity=0.300 Sum_probs=41.9 Q ss_pred CCCCCCCCCH-----HHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHEEECHHHHHHHHHHHHCCCEEEE Q ss_conf 5556887899-----99999997215530378731656657887410135667700077859999999987537980999 Q gi|254780180|r 193 APTAGLHFTS-----NLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGRIVS 267 (360) Q Consensus 193 APTAGLHFt~-----~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~~g~rIiA 267 (360) =|||||--.. +++++|+++|+.+..+|.+...- ..+.|+. .+ -++|+|++ T Consensus 159 EPtsgLD~~~~~~i~~li~~l~~~g~tIi~vtHdl~~~-------~~~~drv------~v------------l~~G~ii~ 213 (249) T 2qi9_C 159 EPXNSLDVAQQSALDKILSALSQQGLAIVXSSHDLNHT-------LRHAHRA------WL------------LKGGKXLA 213 (249) T ss_dssp STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-------HHHCSEE------EE------------EETTEEEE T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH-------HHHCCEE------EE------------EECCEEEE T ss_conf 87666898999999999999997798899971899999-------9969999------99------------98998999 Q ss_pred ECHHHH----HHHHHHHH Q ss_conf 628789----98999985 Q gi|254780180|r 268 VGTTSL----RLLETATT 281 (360) Q Consensus 268 VGTT~~----R~LEs~~~ 281 (360) .|++.- ..++.++. T Consensus 214 ~g~~~ei~~~~~l~~~y~ 231 (249) T 2qi9_C 214 SGRREEVLTPPNLAQAYG 231 (249) T ss_dssp EEEHHHHSCHHHHHHHHS T ss_pred ECCHHHHHCCHHHHHHHC T ss_conf 889999808988999848 No 55 >>1zcz_A Bifunctional purine biosynthesis protein PURH; TM1249; HET: PG4; 1.88A {Thermotoga maritima} (A:183-315) Probab=22.64 E-value=48 Score=13.71 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=17.7 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCEEE Q ss_conf 40055568878999999999721553037 Q gi|254780180|r 190 SVAAPTAGLHFTSNLLSRLISIGIKVYFV 218 (360) Q Consensus 190 SVAAPTAGLHFt~~ll~~L~~kGi~~~~i 218 (360) -|.|| .||++-++-|++|.+.+-.+ T Consensus 106 viiAP----~~~~eAleiL~kKnlRil~~ 130 (133) T 1zcz_A 106 VIVAP----SFTQEAIEVLSKKKVRLLKP 130 (133) T ss_dssp EEECS----CBCHHHHHHHTTSSCEEEEE T ss_pred EEEEC----CCCHHHHHHHHHCCCHHHCC T ss_conf 99965----86567788873155201023 No 56 >>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein LOLD; structural genomics, NPPSFA; 1.70A {Aquifex aeolicus VF5} PDB: 2pcl_A (A:) Probab=22.60 E-value=36 Score=14.63 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=26.8 Q ss_pred CCCCCCCCC-----HHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 555688789-----999999997215530378731656 Q gi|254780180|r 193 APTAGLHFT-----SNLLSRLISIGIKVYFVTLHVGAG 225 (360) Q Consensus 193 APTAGLHFt-----~~ll~~L~~kGi~~~~iTLHVG~G 225 (360) -|||||.-. .+++.+++++|+.+..||.+.-.- T Consensus 166 EPTs~LD~~~~~~v~~~l~~l~~~g~tii~vtHd~e~~ 203 (224) T 2pcj_A 166 EPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA 203 (224) T ss_dssp STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH T ss_conf 88779999999999999999996299899995779999 No 57 >>2obb_A Hypothetical protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.20A {Bacteroides thetaiotaomicron vpi-5482} (A:) Probab=22.24 E-value=40 Score=14.29 Aligned_cols=23 Identities=9% Similarity=-0.010 Sum_probs=10.5 Q ss_pred EECHHHHHHHHHHHHCCCEEEEE Q ss_conf 78599999999875379809996 Q gi|254780180|r 246 FIDAPTAQALNSVKSRGGRIVSV 268 (360) Q Consensus 246 ~i~~~~~~~I~~ak~~g~rIiAV 268 (360) .+-+.+.+.+...|++|-+++-+ T Consensus 24 ~~~pgv~e~L~~Lk~~G~~i~i~ 46 (142) T 2obb_A 24 EEIPFAVETLKLLQQEKHRLILW 46 (142) T ss_dssp CBCTTHHHHHHHHHHTTCEEEEC T ss_pred CCCHHHHHHHHHHHHCCCEEEEE T ss_conf 73399999999999879939999 No 58 >>3krs_A Triosephosphate isomerase; ssgcid, SBRI, emerald biostructures, university of washington, NIH, niaid, structural genomics; 1.55A {Cryptosporidium parvum iowa II} (A:) Probab=21.83 E-value=47 Score=13.75 Aligned_cols=126 Identities=19% Similarity=0.267 Sum_probs=67.7 Q ss_pred HCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHH----EEECHHHHHHH Q ss_conf 10134567574005556887899999999972155303787316566578874101356677000----77859999999 Q gi|254780180|r 180 YQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEI----GFIDAPTAQAL 255 (360) Q Consensus 180 YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~----~~i~~~~~~~I 255 (360) -|.|++...|+--- +.++++|.+ -|+++..| | |+|. .+..+...+++ T Consensus 86 AQnv~~~~~Ga~TG-----EiS~~mL~d---~G~~~viI------G---------------HSERR~~f~E~~~~i~~Kv 136 (271) T 3krs_A 86 SQNISCTGNGAFTG-----EVSCEMLKD---MDVDCSLV------G---------------HSERRQYYSETDQIVNNKV 136 (271) T ss_dssp BSCCCSSCSBSCTT-----CCCHHHHHH---TTCCEEEE------S---------------CHHHHHHSCCCHHHHHHHH T ss_pred HHCCCCCCCCCCCC-----CCCHHHHHH---HCCCEEEE------C---------------CCCCEECCCCCCHHHHHHH T ss_conf 43142101232012-----323888887---46563454------1---------------4102101246568898899 Q ss_pred HHHHHCCC-EEEEECHHH------------HHHHHHHHHCCCCCCCCCCCCCEEEC--CCCCCEEEEEEEECCCCCHHHH Q ss_conf 98753798-099962878------------99899998528984688872236657--4096114312552775545789 Q gi|254780180|r 256 NSVKSRGG-RIVSVGTTS------------LRLLETATTEDGIINPWSGFTNIFIT--PGYRFRAVDILMSNFHLPKSTL 320 (360) Q Consensus 256 ~~ak~~g~-rIiAVGTT~------------~R~LEs~~~~~~~~~~~~g~T~lfI~--Pg~~f~~vd~LiTNFH~P~Stl 320 (360) +.|.+.|= .|+|||.|. .+-|+.+. .....+.++.|- |-+-.. |+ -.|-... T Consensus 137 ~~al~~gl~pIvCvGE~~e~re~~~~~~~v~~Ql~~~~------~~~~~~~~ivIAYEPvWAIG------tg-~~as~~~ 203 (271) T 3krs_A 137 KKGLENGLKIVLCIGESLSERETGKTNDVIQKQLTEAL------KDVSDLSNLVIAYEPIWAIG------TG-VVATPGQ 203 (271) T ss_dssp HHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHT------TTCCCCTTEEEEECCGGGSS------SS-CCCCHHH T ss_pred HHHHHHCCCEEEEECCCHHHHCCHHHHHHHHHHHHHHH------CCCCCCCEEEEEECCHHHCC------CC-CCCCCCH T ss_conf 99886257068983441665300147777777676530------35356650899965244216------78-6676310 Q ss_pred HHHHHHHHCHHHHHHHHHHHHHCCCEEE Q ss_conf 9999987198999999999998698261 Q gi|254780180|r 321 LMLVSAFCGIEETKKMYQHAISHAYRFY 348 (360) Q Consensus 321 l~Lv~Af~G~~~~~~~Y~~Ai~~~yrF~ 348 (360) .--+.+|+ |+.+.+.|...+..+.|.. T Consensus 204 i~~v~~~I-r~~l~~~~~~~~~~~v~il 230 (271) T 3krs_A 204 AQEAHAFI-REYVTRMYNPQVSSNLRII 230 (271) T ss_dssp HHHHHHHH-HHHHHHHSCHHHHHHCCEE T ss_pred HHHHHHHH-HHHHHHHCCHHHCCCCCEE T ss_conf 02468899-9999876073132676388 No 59 >>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porphyria, structural genomics, riken structural genomics/proteomics initiative; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A (A:48-161) Probab=21.48 E-value=51 Score=13.55 Aligned_cols=36 Identities=14% Similarity=0.030 Sum_probs=24.6 Q ss_pred HEEECHHHHHHHHHHH----------HCCCEEEEECHHHHHHHHHH Q ss_conf 0778599999999875----------37980999628789989999 Q gi|254780180|r 244 IGFIDAPTAQALNSVK----------SRGGRIVSVGTTSLRLLETA 279 (360) Q Consensus 244 ~~~i~~~~~~~I~~ak----------~~g~rIiAVGTT~~R~LEs~ 279 (360) -++.|..+++...+.- -.+-+|+|||-.+.++|+.. T Consensus 16 iiFTS~~~V~~~~~~~~~~~~~~~~~l~~~~i~avG~~Ta~~L~~~ 61 (114) T 1wcw_A 16 FLATTGVGVRDLLEAGKALGLDLEGPLAKAFRLARGAKAARALKEA 61 (114) T ss_dssp EEECCHHHHHHHHHHHHHTTCCCHHHHHHSEEEESSHHHHHHHHHT T ss_pred EEEECHHHHHHHHHHHHHCCCCHHHHHCCCEEEEECHHHHHHHHHC T ss_conf 9997989999999999873964767841885999978999999974 No 60 >>2yz2_A Putative ABC transporter ATP-binding protein TM_0222; cobalt transport, hydrolase, inner membrane, membrane, nucleotide- binding; 2.30A {Thermotoga maritima MSB8} (A:) Probab=21.40 E-value=40 Score=14.29 Aligned_cols=55 Identities=18% Similarity=0.271 Sum_probs=38.3 Q ss_pred CCCCCCCCC-----HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHEEECHHHHHHHHHHHHCCCEEEE Q ss_conf 555688789-----999999997215530378731656657887410135667700077859999999987537980999 Q gi|254780180|r 193 APTAGLHFT-----SNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGRIVS 267 (360) Q Consensus 193 APTAGLHFt-----~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~~g~rIiA 267 (360) =||+||--. .+++.+|+++|..+..||.++..- ..+-|+ +-| -++|++++ T Consensus 164 EPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~-------~~~adr------i~v------------l~~G~iv~ 218 (266) T 2yz2_A 164 EPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETV-------INHVDR------VVV------------LEKGKKVF 218 (266) T ss_dssp STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTT-------GGGCSE------EEE------------EETTEEEE T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHH-------HHHCCE------EEE------------EECCEEEE T ss_conf 78677787889999999986541694899994899999-------996999------999------------98998999 Q ss_pred ECHHH Q ss_conf 62878 Q gi|254780180|r 268 VGTTS 272 (360) Q Consensus 268 VGTT~ 272 (360) -||.. T Consensus 219 ~G~~~ 223 (266) T 2yz2_A 219 DGTRM 223 (266) T ss_dssp EEEHH T ss_pred ECCHH T ss_conf 88999 No 61 >2k1g_A Solution Nmr Structure Of Lipoprotein Spr {Escherichia Coli K12.} (A:) Probab=21.15 E-value=49 Score=13.67 Aligned_cols=14 Identities=21% Similarity=0.529 Sum_probs=6.5 Q ss_pred CCCCCCCCEEEECC Q ss_conf 56436985799705 Q gi|254780180|r 106 SKVIKKGDILHFFS 119 (360) Q Consensus 106 ~kklk~G~~l~~~~ 119 (360) ...+++||.|.|.. T Consensus 65 ~~~~~pGDlif~~~ 78 (135) T 2k1g_A 65 RSNLRTGDLVLFRA 78 (135) T ss_dssp GGGCCTTEEEEEEE T ss_pred CCCCCCCCEEEECC T ss_conf 35788761888679 No 62 >>1aw2_A Triosephosphate isomerase; psychrophilic; 2.65A {Vibrio marinus} (A:) Probab=20.62 E-value=50 Score=13.61 Aligned_cols=63 Identities=22% Similarity=0.328 Sum_probs=39.1 Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCH----HEEECHHHHHHHH Q ss_conf 013456757400555688789999999997215530378731656657887410135667700----0778599999999 Q gi|254780180|r 181 QTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSE----IGFIDAPTAQALN 256 (360) Q Consensus 181 QTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E----~~~i~~~~~~~I~ 256 (360) |.|+....|+-- =+.+.++|..+ |++.+.| | |+| +.+......+++. T Consensus 66 Qnv~~~~~Ga~T-----GeiS~~mL~d~---G~~~vli----G-----------------HSERR~~f~E~d~~i~~Kv~ 116 (256) T 1aw2_A 66 QNTDLNNSGAFT-----GDMSPAMLKEF---GATHIII----G-----------------HSERREYHAESDEFVAKKFA 116 (256) T ss_dssp SCCCSCSSBSCT-----TCCCHHHHHHH---TCCEEEE----S-----------------CHHHHHHSCCCHHHHHHHHH T ss_pred CCCHHHCCCCCC-----CCCCHHHHHHH---HCCEEEE----C-----------------CCCCCCCCCCCHHHHHHHHH T ss_conf 101011155411-----20139988643---0231443----1-----------------52344443532899999999 Q ss_pred HHHHCCC-EEEEECHHH Q ss_conf 8753798-099962878 Q gi|254780180|r 257 SVKSRGG-RIVSVGTTS 272 (360) Q Consensus 257 ~ak~~g~-rIiAVGTT~ 272 (360) .+++.|- .|+|||.|. T Consensus 117 ~al~~gl~pivCiGE~~ 133 (256) T 1aw2_A 117 FLKENGLTPVLCIGESD 133 (256) T ss_dssp HHHHHTCEEEEEECCCH T ss_pred HHHHHCCCEEEEECCCC T ss_conf 99872264599805643 No 63 >>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A (A:72-187) Probab=20.28 E-value=53 Score=13.38 Aligned_cols=35 Identities=14% Similarity=0.042 Sum_probs=21.6 Q ss_pred EEECHHHHHHHHHHHH----------CCCEEEEECHHHHHHHHHH Q ss_conf 7785999999998753----------7980999628789989999 Q gi|254780180|r 245 GFIDAPTAQALNSVKS----------RGGRIVSVGTTSLRLLETA 279 (360) Q Consensus 245 ~~i~~~~~~~I~~ak~----------~g~rIiAVGTT~~R~LEs~ 279 (360) ++.|...++...+.-. .+-+|+|||-.+.++|+.. T Consensus 18 ifTS~~aV~~~~~~l~~~~~~~~~~l~~~~i~avG~~Ta~~L~~~ 62 (116) T 3d8t_A 18 LATTGVGVRDLLEAGKALGLDLEGPLAKAFRLARGAKAARALKEA 62 (116) T ss_dssp EECCHHHHHHHHHHHHHTTCCCHHHHHHSEEEESSHHHHHHHHHT T ss_pred EEECHHHHHHHHHHHHHHCCCHHHHHHCCEEEEECCHHHHHHHHC T ss_conf 998879999999999980975546631786999870189999987 No 64 >>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} (A:1-104) Probab=20.14 E-value=54 Score=13.36 Aligned_cols=28 Identities=7% Similarity=0.067 Sum_probs=12.7 Q ss_pred HHHHHHHHHHCCCEEEEECHHHHHHHHH Q ss_conf 9999998753798099962878998999 Q gi|254780180|r 251 TAQALNSVKSRGGRIVSVGTTSLRLLET 278 (360) Q Consensus 251 ~~~~I~~ak~~g~rIiAVGTT~~R~LEs 278 (360) ++..++.++.-|-+.+||=|..=|.-.. T Consensus 13 A~Ri~rt~~elgi~tvav~s~~D~~~~~ 40 (104) T 2vpq_A 13 AVRIIRACRDLGIQTVAIYSEGDKDALH 40 (104) T ss_dssp HHHHHHHHHHTTCEEEEEEEGGGTTCHH T ss_pred HHHHHHHHHHCCCEEEEECCCHHHCCCC T ss_conf 9999999998799499986816746899 No 65 >>3gfz_A Klebsiella pneumoniae BLRP1; TIM-barrel, EAL domain, BLUF domain, hydrolase, signaling protein; HET: C2E FMN; 2.05A {Klebsiella pneumoniae subsp} PDB: 3gfy_A* 3gfx_A* 3gg0_A* 3gg1_A* 2kb2_A* (A:150-413) Probab=20.03 E-value=54 Score=13.34 Aligned_cols=86 Identities=15% Similarity=0.104 Sum_probs=59.0 Q ss_pred CCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHEEE---C----HHHHHHHHHHHHCCCEEEEECH Q ss_conf 87899999999972155303787316566578874101356677000778---5----9999999987537980999628 Q gi|254780180|r 198 LHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGFI---D----APTAQALNSVKSRGGRIVSVGT 270 (360) Q Consensus 198 LHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~i---~----~~~~~~I~~ak~~g~rIiAVGT 270 (360) ..--..++++|++.|+.++-=....|..+|.-+..-.+.--|++...+.. + .-.-..++-++..|-.|||=|- T Consensus 141 ~~~~~~~l~~l~~~G~~i~ldd~g~~~~~~~~l~~~~~~~iKid~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~viaegV 220 (264) T 3gfz_A 141 FDQFRKVLKALRVAGMKLAIDDFGAGYSGLSLLTRFQPDKIKVDAELVRDIHISGTKQAIVASVVRCCEDLGITVVAEGV 220 (264) T ss_dssp STTHHHHHHHHHHHTCEEEEEEETSSSCSHHHHTTCCCSEEEECHHHHTTTTTBHHHHHHHHHHHHHHHHHTCEEEEECC T ss_pred HHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHCCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC T ss_conf 68899999998853875355577887104899985899999989899841045966899999999999985998999718 Q ss_pred HHHHHHHHHHHCC Q ss_conf 7899899998528 Q gi|254780180|r 271 TSLRLLETATTED 283 (360) Q Consensus 271 T~~R~LEs~~~~~ 283 (360) -+-..++.+...+ T Consensus 221 e~~~~~~~l~~~g 233 (264) T 3gfz_A 221 ETLEEWCWLQSVG 233 (264) T ss_dssp CSHHHHHHHHHTT T ss_pred CCHHHHHHHHHCC T ss_conf 8299999999779 Done!