HHsearch results for GI: 254780180 and protein with PDBid: 1yy3_A

>1yy3_A S-adenosylmethionine:tRNA ribosyltransferase- isomerase; beta-barrel, QUEA, quein queuosine, tRNA- modification; 2.88A {Bacillus subtilis}
Probab=100.00  E-value=0  Score=1020.68  Aligned_cols=341  Identities=42%  Similarity=0.722  Sum_probs=319.7

Q ss_pred             CCCCCCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCC
Q ss_conf             98633588889778616998781203135663788875315310143478726988799994795688899876404677
Q gi|254780180|r    1 MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHIN   80 (360)
Q Consensus         1 M~lsdfDy~LP~elIAq~P~~~Rd~SRLLV~~r~~~~~~~i~h~~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~   80 (360)
                      |+||+|||+||+|||||+|+++||+|||||++++++   +|+|+.|+||++||+||||||||||||+||||+|.|.    
T Consensus         5 mkl~~fDy~LP~eLIAq~P~~~Rd~SRLLV~~r~~~---~i~h~~F~dl~~~L~~gDlLV~NnTkVipARL~g~k~----   77 (346)
T 1yy3_A            5 SKVDLFDFELPERLIAQVPLEQRDASRLMVLDKHTG---ELTDSSFKHIISFFNEGDCLVLNNTRVLPARLFGTKE----   77 (346)
T ss_dssp             ---CCSCCCCCTTTBCSSCCTTSTTSBEEECCTTTC---CCCCCBTTGGGGGCCTTEEEEECCCCSCCEEEEEEES----
T ss_pred             CCHHHCCCCCCHHHHCCCCCCCCCCCEEEEEECCCC---CEEEEEHHHHHHHCCCCCEEEEECCEEEEEEEEEEEC----
T ss_conf             734114889994897689999976352878988999---0677655126764799989999899988558985744----


Q ss_pred             CCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             77650589981124866101122115643698579970578874069999603557724999726786300025442035
Q gi|254780180|r   81 RREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQSRLEATVIDKWNTGEILLVFSISGIELERQISLVGTI  160 (360)
Q Consensus        81 ~~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~~~~~~~l~~~vi~~~~~g~~~i~f~~~~~~~~~~L~~~G~i  160 (360)
                      .+|+++|+++++..+++.|.|++||+||+++|+++.|.+..    ..+.+.+..+.+.+.++|..++ ++.++|+++|+|
T Consensus        78 ~~g~~veill~~~~~~~~w~al~kp~kk~~~g~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~G~~  152 (346)
T 1yy3_A           78 DTGAKVELLLLKQETGDKWETLAKPAKRVKKGTVVTFGDGR----LKAICTEELEHGGRKMEFQYDG-IFYEVLESLGEM  152 (346)
T ss_dssp             SSSCCEEEEEEEECSTTEEEEEETTGGGSCTTCEEEETTSS----SEEEEEEECTTSCEEEEEECSS-CHHHHHHHHHTC
T ss_pred             CCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCEEEECCCC----EEEEEEEEECCCCEEEEECCCC-CHHHHHHHCCCC
T ss_conf             88866999861124687479985156666778689956983----7999999806883899962787-289999972899


Q ss_pred             CCCHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             78522212345652114331013456757400555688789999999997215530378731656657887410135667
Q gi|254780180|r  161 PLPPYIARKRPIDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIM  240 (360)
Q Consensus       161 PLPPYI~r~r~~~~~D~~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~m  240 (360)
                      ||||||+|+  +  .|.+|||||||+++|||||||||||||++||++|++|||++++||||||+|||+||++|+|++|+|
T Consensus       153 PLPPYI~r~--~--~D~~rYQTVyA~~~GSvAAPTAGLHFt~~ll~~L~~kGv~i~~iTLHVG~GTF~Pv~~e~i~~h~m  228 (346)
T 1yy3_A          153 PLPPYIKEQ--L--DDKERYQTVYSKEIGSAAAPTAGLHFTEEILQQLKDKGVQIEFITLHVGLGTFRPVSADEVEEHNM  228 (346)
T ss_dssp             CCCHHHHTT--S--SSCC------------CCCCSSTTCCCHHHHHHHHHHTEEEEECEEESGGGGGC-----------C
T ss_pred             CCCCCCCCC--C--CHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf             999550356--0--219999999721689702887888789999999998698599999961477657766554445788


Q ss_pred             CCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHC-CCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCHHH
Q ss_conf             700077859999999987537980999628789989999852-8984688872236657409611431255277554578
Q gi|254780180|r  241 HSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTE-DGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPKST  319 (360)
Q Consensus       241 H~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~~-~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~St  319 (360)
                      |+|||+||++|+++||+||++|||||||||||||||||++.. +|.+++++|||||||+|||+|++||+||||||+||||
T Consensus       229 H~E~~~i~~~t~~~I~~ak~~g~rIiAVGTT~~RaLEs~~~~~~g~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~St  308 (346)
T 1yy3_A          229 HAEFYQMSEETAAALNKVRENGGRIISVGTTSTRTLETIAGEHDGQFKASSGWTSIFIYPGYEFKAIDGMITNFHLPKSS  308 (346)
T ss_dssp             CCEEEEECHHHHHHHHHHHHTTCCEEEECTTTHHHHHHHHHTTTSCCCCEEEEECCCCCTTCCCSSCSEEEEECCCTTSS
T ss_pred             CCEEEEECHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCEECCCEECCCCCCCH
T ss_conf             76689824999999999997599099994516888898875049960688864281877999788828666357278458


Q ss_pred             HHHHHHHHHCHHHHHHHHHHHHHCCCEEECCCCHHHCC
Q ss_conf             99999987198999999999998698261101022233
Q gi|254780180|r  320 LLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLF  357 (360)
Q Consensus       320 ll~Lv~Af~G~~~~~~~Y~~Ai~~~yrF~syGDamLi~  357 (360)
                      ||||||||+|+++|+++|++||+++||||||||||||+
T Consensus       309 ll~Lv~Af~g~~~~~~~Y~~Ai~~~yrf~syGDamlil  346 (346)
T 1yy3_A          309 LIMLVSALAGRENILRAYNHAVEEEYRFFSFGDAMLII  346 (346)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHTTCCBSSSSCEEEC-
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHEEC
T ss_conf             99999995897999999999998798501502432009