HHsearch results for GI: 254780180 and protein with PDBid: 1yy3_A
>1yy3_A S-adenosylmethionine:tRNA ribosyltransferase- isomerase; beta-barrel, QUEA, quein queuosine, tRNA- modification; 2.88A {Bacillus subtilis}
Probab=100.00 E-value=0 Score=1020.68 Aligned_cols=341 Identities=42% Similarity=0.722 Sum_probs=319.7
Q ss_pred CCCCCCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCC
Q ss_conf 98633588889778616998781203135663788875315310143478726988799994795688899876404677
Q gi|254780180|r 1 MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHIN 80 (360)
Q Consensus 1 M~lsdfDy~LP~elIAq~P~~~Rd~SRLLV~~r~~~~~~~i~h~~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~ 80 (360)
|+||+|||+||+|||||+|+++||+|||||++++++ +|+|+.|+||++||+||||||||||||+||||+|.|.
T Consensus 5 mkl~~fDy~LP~eLIAq~P~~~Rd~SRLLV~~r~~~---~i~h~~F~dl~~~L~~gDlLV~NnTkVipARL~g~k~---- 77 (346)
T 1yy3_A 5 SKVDLFDFELPERLIAQVPLEQRDASRLMVLDKHTG---ELTDSSFKHIISFFNEGDCLVLNNTRVLPARLFGTKE---- 77 (346)
T ss_dssp ---CCSCCCCCTTTBCSSCCTTSTTSBEEECCTTTC---CCCCCBTTGGGGGCCTTEEEEECCCCSCCEEEEEEES----
T ss_pred CCHHHCCCCCCHHHHCCCCCCCCCCCEEEEEECCCC---CEEEEEHHHHHHHCCCCCEEEEECCEEEEEEEEEEEC----
T ss_conf 734114889994897689999976352878988999---0677655126764799989999899988558985744----
Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 77650589981124866101122115643698579970578874069999603557724999726786300025442035
Q gi|254780180|r 81 RREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQSRLEATVIDKWNTGEILLVFSISGIELERQISLVGTI 160 (360)
Q Consensus 81 ~~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~~~~~~~l~~~vi~~~~~g~~~i~f~~~~~~~~~~L~~~G~i 160 (360)
.+|+++|+++++..+++.|.|++||+||+++|+++.|.+.. ..+.+.+..+.+.+.++|..++ ++.++|+++|+|
T Consensus 78 ~~g~~veill~~~~~~~~w~al~kp~kk~~~g~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~G~~ 152 (346)
T 1yy3_A 78 DTGAKVELLLLKQETGDKWETLAKPAKRVKKGTVVTFGDGR----LKAICTEELEHGGRKMEFQYDG-IFYEVLESLGEM 152 (346)
T ss_dssp SSSCCEEEEEEEECSTTEEEEEETTGGGSCTTCEEEETTSS----SEEEEEEECTTSCEEEEEECSS-CHHHHHHHHHTC
T ss_pred CCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCEEEECCCC----EEEEEEEEECCCCEEEEECCCC-CHHHHHHHCCCC
T ss_conf 88866999861124687479985156666778689956983----7999999806883899962787-289999972899
Q ss_pred CCCHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 78522212345652114331013456757400555688789999999997215530378731656657887410135667
Q gi|254780180|r 161 PLPPYIARKRPIDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIM 240 (360)
Q Consensus 161 PLPPYI~r~r~~~~~D~~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~m 240 (360)
||||||+|+ + .|.+|||||||+++|||||||||||||++||++|++|||++++||||||+|||+||++|+|++|+|
T Consensus 153 PLPPYI~r~--~--~D~~rYQTVyA~~~GSvAAPTAGLHFt~~ll~~L~~kGv~i~~iTLHVG~GTF~Pv~~e~i~~h~m 228 (346)
T 1yy3_A 153 PLPPYIKEQ--L--DDKERYQTVYSKEIGSAAAPTAGLHFTEEILQQLKDKGVQIEFITLHVGLGTFRPVSADEVEEHNM 228 (346)
T ss_dssp CCCHHHHTT--S--SSCC------------CCCCSSTTCCCHHHHHHHHHHTEEEEECEEESGGGGGC-----------C
T ss_pred CCCCCCCCC--C--CHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 999550356--0--219999999721689702887888789999999998698599999961477657766554445788
Q ss_pred CCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHC-CCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCHHH
Q ss_conf 700077859999999987537980999628789989999852-8984688872236657409611431255277554578
Q gi|254780180|r 241 HSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTE-DGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPKST 319 (360)
Q Consensus 241 H~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~~-~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~St 319 (360)
|+|||+||++|+++||+||++|||||||||||||||||++.. +|.+++++|||||||+|||+|++||+||||||+||||
T Consensus 229 H~E~~~i~~~t~~~I~~ak~~g~rIiAVGTT~~RaLEs~~~~~~g~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~St 308 (346)
T 1yy3_A 229 HAEFYQMSEETAAALNKVRENGGRIISVGTTSTRTLETIAGEHDGQFKASSGWTSIFIYPGYEFKAIDGMITNFHLPKSS 308 (346)
T ss_dssp CCEEEEECHHHHHHHHHHHHTTCCEEEECTTTHHHHHHHHHTTTSCCCCEEEEECCCCCTTCCCSSCSEEEEECCCTTSS
T ss_pred CCEEEEECHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCEECCCEECCCCCCCH
T ss_conf 76689824999999999997599099994516888898875049960688864281877999788828666357278458
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHCCCEEECCCCHHHCC
Q ss_conf 99999987198999999999998698261101022233
Q gi|254780180|r 320 LLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLF 357 (360)
Q Consensus 320 ll~Lv~Af~G~~~~~~~Y~~Ai~~~yrF~syGDamLi~ 357 (360)
||||||||+|+++|+++|++||+++||||||||||||+
T Consensus 309 ll~Lv~Af~g~~~~~~~Y~~Ai~~~yrf~syGDamlil 346 (346)
T 1yy3_A 309 LIMLVSALAGRENILRAYNHAVEEEYRFFSFGDAMLII 346 (346)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHTTCCBSSSSCEEEC-
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHEEC
T ss_conf 99999995897999999999998798501502432009