Query         gi|254780180|ref|YP_003064593.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 360
No_of_seqs    165 out of 1731
Neff          6.3 
Searched_HMMs 23785
Date          Mon May 23 08:44:52 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780180.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1vky_A S-adenosylmethionine:tR 100.0       0       0 1023.0  25.3  335    1-357    13-347 (347)
  2 1yy3_A S-adenosylmethionine:tR 100.0       0       0 1020.7  26.5  341    1-357     5-346 (346)
  3 1wdi_A Hypothetical protein TT 100.0       0       0 1021.1  24.5  341    1-357     2-345 (345)
  4 3o2g_A Gamma-butyrobetaine dio  84.8    0.62 2.6E-05   26.2   3.2   21  258-278   224-244 (388)
  5 2wbq_A L-arginine beta-hydroxy  83.6    0.75 3.2E-05   25.6   3.2   14  197-210   201-214 (358)
  6 2og5_A Putative oxygenase; non  82.6    0.87 3.6E-05   25.1   3.2   11  349-359   297-307 (357)
  7 1nx8_A CARC, carbapenem syntha  77.5     1.6 6.8E-05   23.2   3.2   26  333-358   218-246 (273)
  8 3eat_X Pyoverdine biosynthesis  76.4     1.8 7.6E-05   22.9   3.2   29  331-359   226-257 (293)
  9 2q4a_A Clavaminate synthase-li  61.4     5.8 0.00025   19.2   3.2   18  342-359   291-309 (330)
 10 2vf7_A UVRA2, excinuclease ABC  50.3     4.9 0.00021   19.7   1.3   29  193-221   407-440 (842)
 11 2r6f_A Excinuclease ABC subuni  49.8     5.1 0.00021   19.6   1.3   32  192-223   531-567 (972)
 12 1aye_A PCPA2, procarboxypeptid  47.5      11 0.00047   17.1   2.8  130  203-345   270-401 (401)
 13 1jr2_A Uroporphyrinogen-III sy  46.9      14 0.00059   16.4   4.2   76  201-279   169-256 (286)
 14 1qyi_A ZR25, hypothetical prot  46.3      10 0.00043   17.5   2.4   28  202-229   221-259 (384)
 15 3cvj_A Putative phosphoheptose  46.1      14 0.00061   16.4   6.0   96  247-347   120-218 (243)
 16 1otj_A Alpha-ketoglutarate-dep  46.0      14 0.00059   16.4   3.1   47   18-68      8-54  (283)
 17 3p9z_A Uroporphyrinogen III co  38.8      18 0.00078   15.6   4.7   86  189-279   111-202 (229)
 18 2oda_A Hypothetical protein ps  37.8      19  0.0008   15.5   2.9   78  198-281    38-123 (196)
 19 1oih_A Putative alkylsulfatase  36.3      20 0.00085   15.3   3.1   53  286-355   201-256 (301)
 20 3hv8_A Protein FIMX; EAL phosp  35.0      21 0.00089   15.2   4.8   83  200-282   154-242 (268)
 21 1xne_A Hypothetical protein PF  33.7      22 0.00093   15.0   3.6   66  106-192    32-102 (113)
 22 1kwm_A Procarboxypeptidase B;   33.4      18 0.00074   15.8   2.0  132  201-345   268-402 (402)
 23 2i2w_A Phosphoheptose isomeras  33.1      23 0.00095   15.0   2.8   22  248-269   144-165 (212)
 24 3iix_A Biotin synthetase, puta  32.3      23 0.00098   14.9   4.8   64  195-270   136-202 (348)
 25 2boa_A Carboxypeptidase A4; me  32.1      23 0.00098   14.9   2.9  130  203-345   273-404 (404)
 26 1r1m_A Outer membrane protein   31.3      23 0.00098   14.9   2.3   78  203-281    74-152 (164)
 27 3icj_A Uncharacterized metal-d  31.1      19 0.00081   15.5   1.8   22  284-306   484-505 (534)
 28 3pfm_A Ggdef domain protein; P  30.9      21 0.00088   15.2   2.0   81  202-282   139-226 (243)
 29 1dtd_A Carboxypeptidase A2; ca  30.4      25   0.001   14.7   2.7  129  203-344   172-302 (303)
 30 3kw0_A Cysteine peptidase; str  30.0      25  0.0011   14.6   2.3   24   41-64     28-51  (214)
 31 2r5f_A Transcriptional regulat  29.9      25  0.0011   14.6   4.4  110  159-281   121-245 (264)
 32 2h6r_A Triosephosphate isomera  29.8      21 0.00089   15.2   1.9   64  180-272    58-122 (219)
 33 2bo9_A Carboxypeptidase A4; me  27.5      28  0.0012   14.3   2.8  131  202-345   176-308 (308)
 34 1w0m_A TIM, triosephosphate is  27.3      28  0.0012   14.3   2.7   64  181-273    62-126 (226)
 35 1tk9_A Phosphoheptose isomeras  26.2      29  0.0012   14.2   3.2   21  248-268   123-143 (188)
 36 3gt2_A Putative uncharacterize  24.1      32  0.0013   13.9   2.3   15   51-65     88-102 (142)
 37 2vvr_A Ribose-5-phosphate isom  24.1      32  0.0013   13.9   2.4   67  190-273     5-71  (149)
 38 1jid_A Signal recognition part  23.5      33  0.0014   13.8   3.2   19  190-213    40-58  (128)
 39 1pca_A Procarboxypeptidase A P  23.4      14 0.00058   16.5   0.0  114  204-329   274-391 (403)
 40 3k7p_A Ribose 5-phosphate isom  23.0      33  0.0014   13.8   2.6   73  189-276    25-97  (179)
 41 3ijp_A DHPR, dihydrodipicolina  22.8      24   0.001   14.7   1.2  184  136-354    88-284 (288)
 42 3jyv_B 40S ribosomal protein S  22.6      34  0.0014   13.7   4.0   21  250-270   120-140 (193)
 43 1omh_A TRWC protein; protein-D  22.6      34  0.0014   13.7   2.9   31  193-227   189-219 (293)
 44 3ofo_B 30S ribosomal protein S  21.8      16 0.00068   16.0   0.1   22  250-271   160-181 (218)
 45 2jyx_A Lipoprotein SPR; soluti  21.4      36  0.0015   13.5   1.8   14   52-65     67-80  (136)
 46 3kzp_A LMO0111 protein, putati  21.3      30  0.0012   14.1   1.4   90  200-291   129-226 (235)
 47 2wm8_A MDP-1, magnesium-depend  21.3      36  0.0015   13.5   3.0   91  200-304    72-170 (187)
 48 1u02_A Trehalose-6-phosphate p  21.3      36  0.0015   13.5   2.7   10  263-272   172-181 (239)
 49 1o1x_A Ribose-5-phosphate isom  20.7      27  0.0011   14.4   1.0   65  190-272    16-81  (155)
 50 1x92_A APC5045, phosphoheptose  20.3      38  0.0016   13.4   3.2   21  248-268   126-146 (199)
 51 1j5w_A Glycyl-tRNA synthetase   20.2      13 0.00057   16.6  -0.6   24   90-113    51-75  (298)
 52 2ipc_A Preprotein translocase   20.2      35  0.0015   13.6   1.5   57  222-280   404-460 (997)

No 1  
>1vky_A S-adenosylmethionine:tRNA ribosyltransferase- isomerase; TM0574, structural genomics, JCSG, protein structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: e.53.1.1
Probab=100.00  E-value=0  Score=1022.95  Aligned_cols=335  Identities=42%  Similarity=0.683  Sum_probs=317.8

Q ss_pred             CCCCCCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCC
Q ss_conf             98633588889778616998781203135663788875315310143478726988799994795688899876404677
Q gi|254780180|r    1 MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHIN   80 (360)
Q Consensus         1 M~lsdfDy~LP~elIAq~P~~~Rd~SRLLV~~r~~~~~~~i~h~~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~   80 (360)
                      |+||||||+||+|||||+|+++||+|||||++++++   .|.|+.|+||++||+||||||||||||+||||+|+|     
T Consensus        13 Mklsdfdy~LP~elIAq~P~~~Rd~SRLLVl~~~~~---~i~h~~F~dl~~~L~~gDlLV~NdTkVipARL~g~k-----   84 (347)
T 1vky_A           13 MKVSEFDYELPPELIAQEPVEPRDASRLMVLHRKTQ---RIEHRIFREIIEYLEPGDLLVLNVSKVIPARLYARK-----   84 (347)
T ss_dssp             ---CTTCCCCCGGGBCSSCCSSGGGSEEEEEETTTT---EEEEEEGGGGGGGCCTTCEEEEEEEECCSCEEEEBC-----
T ss_pred             EEHHHCCCCCCHHHHCCCCCCCCCCCEEEEEECCCC---CEEEEEHHHHHHHCCCCCEEEEECCEEEEEEEEEEE-----
T ss_conf             588783989895996689999965144889988999---077756765686479998999979989887998774-----


Q ss_pred             CCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             77650589981124866101122115643698579970578874069999603557724999726786300025442035
Q gi|254780180|r   81 RREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQSRLEATVIDKWNTGEILLVFSISGIELERQISLVGTI  160 (360)
Q Consensus        81 ~~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~~~~~~~l~~~vi~~~~~g~~~i~f~~~~~~~~~~L~~~G~i  160 (360)
                      .+|++||++++++.+++.|.|++||+||+|+|+++.+.+     .+.++++++.+.+.+.+.|+.+   .+++|+++|+|
T Consensus        85 ~tgg~vEill~~~~~~~~w~~likp~kk~k~g~~l~~~~-----~~~~~v~~~~~~~~~~~~~~~~---~~~~l~~~G~~  156 (347)
T 1vky_A           85 KTGASIEILLIERLEEGIWKCLVRPGQKVKKGTELVIDE-----DLSAVCLGRGEDGTRILKFQPQ---DDRLIFEKGRT  156 (347)
T ss_dssp             ---CCEEEEEEEEEETTEEEEEEESCTTCCTTCEEEEET-----TEEEEEEEECTTSCEEEEEESC---CHHHHHHHC--
T ss_pred             CCCCEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEECC-----CCEEEEEEEECCCCEEEECCCC---HHHHHHHCCCC
T ss_conf             379709999977528983999974076789998899605-----6348999971476078851774---26899977999


Q ss_pred             CCCHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             78522212345652114331013456757400555688789999999997215530378731656657887410135667
Q gi|254780180|r  161 PLPPYIARKRPIDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIM  240 (360)
Q Consensus       161 PLPPYI~r~r~~~~~D~~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~m  240 (360)
                      ||||||+|  +   .|.+|||||||+++|||||||||||||++||++|++|||++++||||||+|||+||++|+|++|+|
T Consensus       157 PLPPYI~r--~---~d~erYQTVyAk~~GSVAAPTAGLHFT~~ll~~L~~kGv~~~~vTLHVG~GTF~Pv~~e~i~~H~m  231 (347)
T 1vky_A          157 PLPPYIKN--E---VPLERYQTVYAKEEGSVAAPTAGLHFTPELIEKLKKKGVQFAEVVLHVGIGTFRPVKVEEVEKHKM  231 (347)
T ss_dssp             ----------------------------------CGGGGCCHHHHHHHHHHTCEEEEEEEEC------------------
T ss_pred             CCCCEEEC--C---CCHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf             99961745--6---418878788714898553677878779999999998499267789986467546764443455788


Q ss_pred             CCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCHHHH
Q ss_conf             70007785999999998753798099962878998999985289846888722366574096114312552775545789
Q gi|254780180|r  241 HSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPKSTL  320 (360)
Q Consensus       241 H~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~~~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~Stl  320 (360)
                      |+|||+||++|+++||+||++|+|||||||||||||||++. +|.+++++|||||||+|||+|++||+||||||+|||||
T Consensus       232 H~E~~~I~~~ta~~I~~ak~~g~RIiAVGTT~~RaLEs~~~-~~~~~~~~G~T~lfI~Pgy~fkvvD~LiTNFHlPkSTL  310 (347)
T 1vky_A          232 HEEFYQVPKETVRKLRETRERGNRIVAVGTTTVRTLETIAR-LPEQEEYVGKTDLFIYPPFEFKLVDALVTNFHLPRSTL  310 (347)
T ss_dssp             CCCEEEECHHHHHHHHHHHHHTCCEEEESHHHHHHHHHHTT-SCCCSSEEECCCCCCCSSCCCSSCSEEEEECCCTTCHH
T ss_pred             CCEEEEECHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHH-HCCCCCCCCCCCEEECCCCCCCEECEEEECCCCCCCHH
T ss_conf             65589937999999999997189489995418999999875-13677778861559789998728276343573783589


Q ss_pred             HHHHHHHHCHHHHHHHHHHHHHCCCEEECCCCHHHCC
Q ss_conf             9999987198999999999998698261101022233
Q gi|254780180|r  321 LMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLF  357 (360)
Q Consensus       321 l~Lv~Af~G~~~~~~~Y~~Ai~~~yrF~syGDamLi~  357 (360)
                      |||||||+|+++++++|++||+++||||||||||||+
T Consensus       311 l~LvsAf~G~~~~~~aY~~Ai~~~YrF~SyGDamLil  347 (347)
T 1vky_A          311 LMLVAAFAGKDFVMEAYREAVKRRYRFFSFGDAMLIL  347 (347)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHTTCCBSTTSCEEEEC
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHCCCCEECCCHHHEEC
T ss_conf             9999985896999999999998799601502230109


No 2  
>1yy3_A S-adenosylmethionine:tRNA ribosyltransferase- isomerase; beta-barrel, QUEA, quein queuosine, tRNA- modification; 2.88A {Bacillus subtilis}
Probab=100.00  E-value=0  Score=1020.68  Aligned_cols=341  Identities=42%  Similarity=0.722  Sum_probs=319.7

Q ss_pred             CCCCCCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCC
Q ss_conf             98633588889778616998781203135663788875315310143478726988799994795688899876404677
Q gi|254780180|r    1 MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHIN   80 (360)
Q Consensus         1 M~lsdfDy~LP~elIAq~P~~~Rd~SRLLV~~r~~~~~~~i~h~~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~   80 (360)
                      |+||+|||+||+|||||+|+++||+|||||++++++   +|+|+.|+||++||+||||||||||||+||||+|.|.    
T Consensus         5 mkl~~fDy~LP~eLIAq~P~~~Rd~SRLLV~~r~~~---~i~h~~F~dl~~~L~~gDlLV~NnTkVipARL~g~k~----   77 (346)
T 1yy3_A            5 SKVDLFDFELPERLIAQVPLEQRDASRLMVLDKHTG---ELTDSSFKHIISFFNEGDCLVLNNTRVLPARLFGTKE----   77 (346)
T ss_dssp             ---CCSCCCCCTTTBCSSCCTTSTTSBEEECCTTTC---CCCCCBTTGGGGGCCTTEEEEECCCCSCCEEEEEEES----
T ss_pred             CCHHHCCCCCCHHHHCCCCCCCCCCCEEEEEECCCC---CEEEEEHHHHHHHCCCCCEEEEECCEEEEEEEEEEEC----
T ss_conf             734114889994897689999976352878988999---0677655126764799989999899988558985744----


Q ss_pred             CCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             77650589981124866101122115643698579970578874069999603557724999726786300025442035
Q gi|254780180|r   81 RREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQSRLEATVIDKWNTGEILLVFSISGIELERQISLVGTI  160 (360)
Q Consensus        81 ~~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~~~~~~~l~~~vi~~~~~g~~~i~f~~~~~~~~~~L~~~G~i  160 (360)
                      .+|+++|+++++..+++.|.|++||+||+++|+++.|.+..    ..+.+.+..+.+.+.++|..++ ++.++|+++|+|
T Consensus        78 ~~g~~veill~~~~~~~~w~al~kp~kk~~~g~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~G~~  152 (346)
T 1yy3_A           78 DTGAKVELLLLKQETGDKWETLAKPAKRVKKGTVVTFGDGR----LKAICTEELEHGGRKMEFQYDG-IFYEVLESLGEM  152 (346)
T ss_dssp             SSSCCEEEEEEEECSTTEEEEEETTGGGSCTTCEEEETTSS----SEEEEEEECTTSCEEEEEECSS-CHHHHHHHHHTC
T ss_pred             CCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCEEEECCCC----EEEEEEEEECCCCEEEEECCCC-CHHHHHHHCCCC
T ss_conf             88866999861124687479985156666778689956983----7999999806883899962787-289999972899


Q ss_pred             CCCHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             78522212345652114331013456757400555688789999999997215530378731656657887410135667
Q gi|254780180|r  161 PLPPYIARKRPIDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIM  240 (360)
Q Consensus       161 PLPPYI~r~r~~~~~D~~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~m  240 (360)
                      ||||||+|+  +  .|.+|||||||+++|||||||||||||++||++|++|||++++||||||+|||+||++|+|++|+|
T Consensus       153 PLPPYI~r~--~--~D~~rYQTVyA~~~GSvAAPTAGLHFt~~ll~~L~~kGv~i~~iTLHVG~GTF~Pv~~e~i~~h~m  228 (346)
T 1yy3_A          153 PLPPYIKEQ--L--DDKERYQTVYSKEIGSAAAPTAGLHFTEEILQQLKDKGVQIEFITLHVGLGTFRPVSADEVEEHNM  228 (346)
T ss_dssp             CCCHHHHTT--S--SSCC------------CCCCSSTTCCCHHHHHHHHHHTEEEEECEEESGGGGGC-----------C
T ss_pred             CCCCCCCCC--C--CHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf             999550356--0--219999999721689702887888789999999998698599999961477657766554445788


Q ss_pred             CCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHC-CCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCHHH
Q ss_conf             700077859999999987537980999628789989999852-8984688872236657409611431255277554578
Q gi|254780180|r  241 HSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTE-DGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPKST  319 (360)
Q Consensus       241 H~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~~-~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~St  319 (360)
                      |+|||+||++|+++||+||++|||||||||||||||||++.. +|.+++++|||||||+|||+|++||+||||||+||||
T Consensus       229 H~E~~~i~~~t~~~I~~ak~~g~rIiAVGTT~~RaLEs~~~~~~g~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~St  308 (346)
T 1yy3_A          229 HAEFYQMSEETAAALNKVRENGGRIISVGTTSTRTLETIAGEHDGQFKASSGWTSIFIYPGYEFKAIDGMITNFHLPKSS  308 (346)
T ss_dssp             CCEEEEECHHHHHHHHHHHHTTCCEEEECTTTHHHHHHHHHTTTSCCCCEEEEECCCCCTTCCCSSCSEEEEECCCTTSS
T ss_pred             CCEEEEECHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCEECCCEECCCCCCCH
T ss_conf             76689824999999999997599099994516888898875049960688864281877999788828666357278458


Q ss_pred             HHHHHHHHHCHHHHHHHHHHHHHCCCEEECCCCHHHCC
Q ss_conf             99999987198999999999998698261101022233
Q gi|254780180|r  320 LLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLF  357 (360)
Q Consensus       320 ll~Lv~Af~G~~~~~~~Y~~Ai~~~yrF~syGDamLi~  357 (360)
                      ||||||||+|+++|+++|++||+++||||||||||||+
T Consensus       309 ll~Lv~Af~g~~~~~~~Y~~Ai~~~yrf~syGDamlil  346 (346)
T 1yy3_A          309 LIMLVSALAGRENILRAYNHAVEEEYRFFSFGDAMLII  346 (346)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHTTCCBSSSSCEEEC-
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHEEC
T ss_conf             99999995897999999999998798501502432009


No 3  
>1wdi_A Hypothetical protein TT0907; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: CIT; 2.10A {Thermus thermophilus} SCOP: e.53.1.1
Probab=100.00  E-value=0  Score=1021.10  Aligned_cols=341  Identities=44%  Similarity=0.676  Sum_probs=319.1

Q ss_pred             CCCCCCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCC
Q ss_conf             98633588889778616998781203135663788875315310143478726988799994795688899876404677
Q gi|254780180|r    1 MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHIN   80 (360)
Q Consensus         1 M~lsdfDy~LP~elIAq~P~~~Rd~SRLLV~~r~~~~~~~i~h~~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~   80 (360)
                      |.||||||+||++||||+|+++||+|||||++++++.  +|+|+.|+||++||+||||||||||||+||||+|+|     
T Consensus         2 ~~L~~fdy~LP~elIAq~P~~~Rd~sRLLV~~r~~~~--~i~h~~F~dl~~~L~~gDlLV~NdTkVipARL~g~k-----   74 (345)
T 1wdi_A            2 EGLEAYDYHLPPEQIAQEGVEPRDMARLMVVYREGPF--RVAHKRVRDLPEFLRPGDVLVFNESKVIPARLLARK-----   74 (345)
T ss_dssp             CGGGGGCCCCCGGGBCSSCCSSGGGSEEEEECSSSSC--CEEEEEGGGHHHHCCTTCEEEEEEEEECCEEEEEEC-----
T ss_pred             CCHHHCCCCCCHHHHCCCCCCCCCCCEEEEEECCCCC--EEEECCHHHHHHHCCCCCEEEEECCEEEEEEEEEEC-----
T ss_conf             9655669998948966899999621238999889998--575331634675479998999989989788999771-----


Q ss_pred             CCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCCCCCC---CEEEEEEECCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf             77650589981124866101122115643698579970578874---069999603557724999726786300025442
Q gi|254780180|r   81 RREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQS---RLEATVIDKWNTGEILLVFSISGIELERQISLV  157 (360)
Q Consensus        81 ~~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~~~~~~---~l~~~vi~~~~~g~~~i~f~~~~~~~~~~L~~~  157 (360)
                      .+|++||+++++..+++.|.|++||+||+++|+++.+.+.....   .+.+++++..+.+.++++|+.   ++.++|+++
T Consensus        75 ~tgg~vEilll~~~~~~~w~al~k~~kk~k~G~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~l~~~  151 (345)
T 1wdi_A           75 PTGGKVEILLVRERSPGLWEALLGPARKAPPGTRLLLLSPKDLAPVPGLQAEVVAVEEDGVRLLRFQG---DLVAHLEEV  151 (345)
T ss_dssp             TTSCEEEEEECBCC------CCBCCCSCCCSCEEEEECTTTTSCEEEEEEEECCCSSCC-------------CCEEESCC
T ss_pred             CCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCEEEECCCCCCEECCCCEEEEEEEECCCCEEEEEHH---HHHHHHHHC
T ss_conf             78970799986325787304530355678989889954874200005726999998068727986103---689999975


Q ss_pred             HCCCCCHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             03578522212345652114331013456757400555688789999999997215530378731656657887410135
Q gi|254780180|r  158 GTIPLPPYIARKRPIDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDD  237 (360)
Q Consensus       158 G~iPLPPYI~r~r~~~~~D~~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~  237 (360)
                      |+|||||||+|+     .|.+|||||||+++|||||||||||||++||++|++|||++++||||||+|||+||+ +++.+
T Consensus       152 G~~PLPPYI~r~-----~d~~rYQTVyAk~~GSVAAPTAGLHFt~~ll~~l~~kgi~~~~iTLHVG~GTF~PV~-~~i~~  225 (345)
T 1wdi_A          152 GEVPLPPYIKAK-----IPMERYQTVYARRPGSVAAPTAGLHFTPELLERLREMGVELRFLTLHVGPGTFRPVK-GDPEK  225 (345)
T ss_dssp             CSCC------------------------------CCCCGGGGCCHHHHHHHHHTTCEEEEEEEEESGGGCCC--------
T ss_pred             CCCCCCHHHHCC-----CHHHHHHHHHCCCCCCEECCCCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCCCCCC-CCCCC
T ss_conf             998888677223-----257663246406898550676878779999999998698089999963677504544-54346


Q ss_pred             CCCCCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCH
Q ss_conf             66770007785999999998753798099962878998999985289846888722366574096114312552775545
Q gi|254780180|r  238 HIMHSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPK  317 (360)
Q Consensus       238 h~mH~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~~~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~  317 (360)
                      |+||+|||+||++|+++||+||++|+|||||||||||||||++..+|.+++++|||||||+|||+|++||+||||||+||
T Consensus       226 H~mH~E~~~I~~~t~~~I~~ak~~g~rIiAVGTT~~RaLEs~~~~~~~~~~~~g~T~lfI~Pgy~f~vvd~LlTNFHlPk  305 (345)
T 1wdi_A          226 HEMHAEPYAIPEEVAEAVNRAKAEGRRVVAVGTTVVRALESAYREGVGVVAGEGETRLFIRPPYTFKVVDALFTNFHLPR  305 (345)
T ss_dssp             --CCCEEEEECHHHHHHHHHHHHTTCCEEEESHHHHHHHHHTEETTTEECCEEEEECCCCCSSCCCSSCSEEEEECCCTT
T ss_pred             CCCCCEEEEECHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCEECEEECCCCCCCEECEEEECCCCCC
T ss_conf             78765389966999999999997499299992408999999996189604678605859639898758176344573784


Q ss_pred             HHHHHHHHHHHCHHHHHHHHHHHHHCCCEEECCCCHHHCC
Q ss_conf             7899999987198999999999998698261101022233
Q gi|254780180|r  318 STLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLF  357 (360)
Q Consensus       318 Stll~Lv~Af~G~~~~~~~Y~~Ai~~~yrF~syGDamLi~  357 (360)
                      ||||||||||+|+++|+++|++||+++||||||||||||+
T Consensus       306 STLl~LvsAf~G~~~~~~~Y~~Ai~~~YrF~SyGDamlil  345 (345)
T 1wdi_A          306 STLLMLVAAFLGRERTLEAYRLAVAEGYRFYSLGDAMLIL  345 (345)
T ss_dssp             CHHHHHHHHHHCHHHHHHHHHHHHHTTCCBSTTSCEEEEC
T ss_pred             CHHHHHHHHHCCHHHHHHHHHHHHHCCCCEECCCHHHEEC
T ss_conf             5899999995898999999999998698344412431109


No 4  
>3o2g_A Gamma-butyrobetaine dioxygenase; gamma-butyrobetaine hydroxylase, 2-OXOG dioxygenase 1, oxidoreductase, structural genomics; HET: OGA NM2; 1.78A {Homo sapiens} PDB: 3ms5_A* 3n6w_A
Probab=84.81  E-value=0.62  Score=26.21  Aligned_cols=21  Identities=14%  Similarity=0.143  Sum_probs=14.8

Q ss_pred             HHHCCCEEEEECHHHHHHHHH
Q ss_conf             753798099962878998999
Q gi|254780180|r  258 VKSRGGRIVSVGTTSLRLLET  278 (360)
Q Consensus       258 ak~~g~rIiAVGTT~~R~LEs  278 (360)
                      +...|.-+++=|-.+...|..
T Consensus       224 ~~~GGet~fvD~~~a~~~L~~  244 (388)
T 3o2g_A          224 TVTGGDSEIVDGFNVCQKLKK  244 (388)
T ss_dssp             CSSSCCEEEEEHHHHHHHHHH
T ss_pred             CCCCCCCEEECHHHHHHHHHH
T ss_conf             478998462637888654445


No 5  
>2wbq_A L-arginine beta-hydroxylase; oxidoreductase, non-heme Fe(II) hydroxylase, cbeta- hydroxylation, L-arginine oxygenase, NRPS, viomycin; HET: ZZU; 1.10A {Streptomyces vinaceus} PDB: 2wbp_A* 2wbo_A*
Probab=83.56  E-value=0.75  Score=25.59  Aligned_cols=14  Identities=14%  Similarity=0.024  Sum_probs=7.6

Q ss_pred             CCCCCHHHHHHHHH
Q ss_conf             88789999999997
Q gi|254780180|r  197 GLHFTSNLLSRLIS  210 (360)
Q Consensus       197 GLHFt~~ll~~L~~  210 (360)
                      --++++++..+|.+
T Consensus       201 ~~~l~~~~~~~L~~  214 (358)
T 2wbq_A          201 LDDLDERTLDVLFQ  214 (358)
T ss_dssp             TTTCCHHHHHHHTS
T ss_pred             HHHCCHHHHHHHHC
T ss_conf             45479999998746


No 6  
>2og5_A Putative oxygenase; non-ribosomal peptide synthesis, iron(II)/alpha- ketoglutarate dependent hydroxylase, jelly-roll fold; 1.45A {Streptomyces coelicolor} PDB: 2og6_A 2og7_A*
Probab=82.58  E-value=0.87  Score=25.15  Aligned_cols=11  Identities=9%  Similarity=0.226  Sum_probs=5.4

Q ss_pred             CCCCHHHCCCC
Q ss_conf             10102223367
Q gi|254780180|r  349 SYGDTSLLFQK  359 (360)
Q Consensus       349 syGDamLi~~~  359 (360)
                      .=||.+++.+.
T Consensus       297 ~pGDllivDN~  307 (357)
T 2og5_A          297 LPGELAIVDNR  307 (357)
T ss_dssp             CTTCEEEEETT
T ss_pred             CCCCEEEEECC
T ss_conf             79978999478


No 7  
>1nx8_A CARC, carbapenem synthase; jelly roll, unknown function; HET: AKG N7P; 2.30A {Pectobacterium carotovorum} SCOP: b.82.2.8 PDB: 1nx4_A*
Probab=77.47  E-value=1.6  Score=23.22  Aligned_cols=26  Identities=12%  Similarity=0.213  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHCCCEE---ECCCCHHHCCC
Q ss_conf             999999999869826---11010222336
Q gi|254780180|r  333 TKKMYQHAISHAYRF---YSYGDTSLLFQ  358 (360)
Q Consensus       333 ~~~~Y~~Ai~~~yrF---~syGDamLi~~  358 (360)
                      +..+++++.+.+|.+   ..=||.+++-+
T Consensus       218 ~~~l~~~~~~~~~~~~~~w~~GDlli~DN  246 (273)
T 1nx8_A          218 FQELGAFLKQPRYYYKHFWEDGDLLIMDN  246 (273)
T ss_dssp             HHHHHHHHTSTTTEEEECCCTTCEEEEET
T ss_pred             HHHHHHHHCCCCEEEEEEECCCCEEEEEC
T ss_conf             99999997497749998855996999926


No 8  
>3eat_X Pyoverdine biosynthesis protein PVCB; paerucumarin, Fe/alpha-ketoglutarate dependent hydroxylase, 2-isocyano-6,7-dihydroxycoumarin; 2.50A {Pseudomonas aeruginosa}
Probab=76.38  E-value=1.8  Score=22.87  Aligned_cols=29  Identities=7%  Similarity=-0.049  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHCCCE--E-ECCCCHHHCCCC
Q ss_conf             9999999999986982--6-110102223367
Q gi|254780180|r  331 EETKKMYQHAISHAYR--F-YSYGDTSLLFQK  359 (360)
Q Consensus       331 ~~~~~~Y~~Ai~~~yr--F-~syGDamLi~~~  359 (360)
                      +.+..+++++.+.+|.  | ..=||..++-+.
T Consensus       226 ~~l~~l~~~~~~~~~~~~~~w~~GDlli~DN~  257 (293)
T 3eat_X          226 ELLASLRRCLYHPQAHYAHRWRSDDLVIADNL  257 (293)
T ss_dssp             HHHHHHHHHHTSTTTEEEECCCTTCEEEEETT
T ss_pred             HHHHHHHHHHCCCCEEEEEEECCCCEEEEEHH
T ss_conf             99999999973957299998069968999214


No 9  
>2q4a_A Clavaminate synthase-like protein AT3G21360; ensemble refinement, refinement methodology development, structural genomics; 2.39A {Arabidopsis thaliana} SCOP: b.82.2.8 PDB: 1y0z_A
Probab=61.39  E-value=5.8  Score=19.19  Aligned_cols=18  Identities=17%  Similarity=0.067  Sum_probs=9.3

Q ss_pred             HCCCEEE-CCCCHHHCCCC
Q ss_conf             8698261-10102223367
Q gi|254780180|r  342 SHAYRFY-SYGDTSLLFQK  359 (360)
Q Consensus       342 ~~~yrF~-syGDamLi~~~  359 (360)
                      +.-|+|- .=||.+++-+.
T Consensus       291 ~~~~~~~Wq~GDivi~DN~  309 (330)
T 2q4a_A          291 EECVAVPWQRGDVLLIDNW  309 (330)
T ss_dssp             HHCBCCCCCTTCEEEEETT
T ss_pred             CEEEEEECCCCCEEEEECH
T ss_conf             1699815689999999111


No 10 
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=50.31  E-value=4.9  Score=19.72  Aligned_cols=29  Identities=31%  Similarity=0.455  Sum_probs=15.8

Q ss_pred             CCCCCCCCCH-----HHHHHHHHHCCCCEEEEEE
Q ss_conf             5556887899-----9999999721553037873
Q gi|254780180|r  193 APTAGLHFTS-----NLLSRLISIGIKVYFVTLH  221 (360)
Q Consensus       193 APTAGLHFt~-----~ll~~L~~kGi~~~~iTLH  221 (360)
                      =||+|||-..     ++|.+|+++|..+..|+.+
T Consensus       407 EPT~~Ldp~~~~~l~~~l~~L~~~G~TvivveHd  440 (842)
T 2vf7_A          407 EPSAGLHPADTEALLSALENLKRGGNSLFVVEHD  440 (842)
T ss_dssp             CTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             8412489899999999999997459748999578


No 11 
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, ATP-binding cassette, cytoplasm; HET: ADP; 3.20A {Geobacillus stearothermophilus 10}
Probab=49.78  E-value=5.1  Score=19.63  Aligned_cols=32  Identities=22%  Similarity=0.349  Sum_probs=24.1

Q ss_pred             CCCCCCCCCCH-----HHHHHHHHHCCCCEEEEEECC
Q ss_conf             05556887899-----999999972155303787316
Q gi|254780180|r  192 AAPTAGLHFTS-----NLLSRLISIGIKVYFVTLHVG  223 (360)
Q Consensus       192 AAPTAGLHFt~-----~ll~~L~~kGi~~~~iTLHVG  223 (360)
                      -=||||||=+.     ++|.+|+++|..+..|+.+.+
T Consensus       531 DEPTs~Ld~~~~~~ll~lLk~Lk~~GnTIIvVeHdl~  567 (972)
T 2r6f_A          531 DEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED  567 (972)
T ss_dssp             ECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf             7831459989999999999999976987999927789


No 12 
>1aye_A PCPA2, procarboxypeptidase A2; serine protease, zymogen, hydrolase; 1.80A {Homo sapiens} SCOP: c.56.5.1 d.58.3.1 PDB: 1o6x_A
Probab=47.49  E-value=11  Score=17.14  Aligned_cols=130  Identities=22%  Similarity=0.280  Sum_probs=69.5

Q ss_pred             HHHHHHHHHCCCCEEEEEECCCCCCC-CCCCCCCCCCCCCCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHH
Q ss_conf             99999997215530378731656657-88741013566770007785999999998753798099962878998999985
Q gi|254780180|r  203 NLLSRLISIGIKVYFVTLHVGAGTFM-PVKVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATT  281 (360)
Q Consensus       203 ~ll~~L~~kGi~~~~iTLHVG~GTF~-Pi~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~  281 (360)
                      .+.+-++..+--..+|++|-+.+-+. |=-. .-..-.-+.|...+....+++|.+....   ...+|+.+    +..+.
T Consensus       270 av~~~~~~~~~i~~~i~~HS~g~~ilyP~g~-~~~~~~~~~~~~~~~~~~a~ai~~~~g~---~Y~~g~~~----~~lY~  341 (401)
T 1aye_A          270 SIVDFIKSHGKVKAFIILHSYSQLLMFPYGY-KCTKLDDFDELSEVAQKAAQSLRSLHGT---KYKVGPIC----SVIYQ  341 (401)
T ss_dssp             HHHHHHHHHCCEEEEEEEEESSCEEEESCSS-SCSCCTTHHHHHHHHHHHHHHHHHHHCC---CCEEEEHH----HHTCC
T ss_pred             HHHHHHHHCCCCEEEEECCCCCCEEEECCCC-CCCCCCCHHHHHHHHHHHHHHHHHHCCC---CCCCCCCC----CCCCC
T ss_conf             9999998437604999726898568837888-8889998799999999999999985499---87458865----70521


Q ss_pred             CCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCHHHHHHHH-HHHHCHHHHHHHHHHHHHCCC
Q ss_conf             2898468887223665740961143125527755457899999-987198999999999998698
Q gi|254780180|r  282 EDGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPKSTLLMLV-SAFCGIEETKKMYQHAISHAY  345 (360)
Q Consensus       282 ~~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~Stll~Lv-~Af~G~~~~~~~Y~~Ai~~~y  345 (360)
                      ..|....|.-  +..|.+.|.+.+-|.=-..|++|.+-..-.. ..|+|   ++..-+++.++.|
T Consensus       342 ~~G~s~Dw~y--~~~~~~s~t~EL~d~g~~gF~lP~~~I~p~~~E~~~~---~~~~~~~i~~~~y  401 (401)
T 1aye_A          342 ASGGSIDWSY--DYGIKYSFAFELRDTGRYGFLLPARQILPTAEETWLG---LKAIMEHVRDHPY  401 (401)
T ss_dssp             CSSCHHHHHH--HTTCSEEEEEEESCSSSSTTSCCGGGHHHHHHHHHHH---HHHHHHHHHHSCC
T ss_pred             CCCHHHHHHC--CCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHCCC
T ss_conf             6755997754--4698299999967898899879999999999999999---9999999986699


No 13 
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=46.91  E-value=14  Score=16.44  Aligned_cols=76  Identities=16%  Similarity=0.100  Sum_probs=42.2

Q ss_pred             CHHHHHHHHHHCCCCEEEEEECCCCCCCC-CCCCCCCC----CCCCCHHEEECHHHHHHHHH-------HHHCCCEEEEE
Q ss_conf             99999999972155303787316566578-87410135----66770007785999999998-------75379809996
Q gi|254780180|r  201 TSNLLSRLISIGIKVYFVTLHVGAGTFMP-VKVEDTDD----HIMHSEIGFIDAPTAQALNS-------VKSRGGRIVSV  268 (360)
Q Consensus       201 t~~ll~~L~~kGi~~~~iTLHVG~GTF~P-i~~~~i~~----h~mH~E~~~i~~~~~~~I~~-------ak~~g~rIiAV  268 (360)
                      .+.|-+.|+++|+++..+.+--   |-.+ ...+.+.+    .....=-.+-|..+++...+       ....+-+++|+
T Consensus       169 ~~~L~~~L~~~G~~v~~~~vY~---t~~~~~~~~~~~~~l~~~~~~d~VvFtSps~v~~f~~~l~~~~~~~~~~~~i~aI  245 (286)
T 1jr2_A          169 REILPKALKDKGIAMESITVYQ---TVAHPGIQGNLNSYYSQQGVPASITFFSPSGLTYSLKHIQELSGDNIDQIKFAAI  245 (286)
T ss_dssp             GCCHHHHHHTTTCCEEEEECEE---EEECTTHHHHHHHHHHHHCSCSEEEESSHHHHHHHHHHHHHHHGGGGGGSEEEES
T ss_pred             HHHHHHHHHHCCCEEEEEEEEE---EECCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf             0789999984798556998872---2148742188999987326872999939899999999998730324368189998


Q ss_pred             CHHHHHHHHHH
Q ss_conf             28789989999
Q gi|254780180|r  269 GTTSLRLLETA  279 (360)
Q Consensus       269 GTT~~R~LEs~  279 (360)
                      |-++..+|+..
T Consensus       246 G~~Ta~~l~~~  256 (286)
T 1jr2_A          246 GPTTARALAAQ  256 (286)
T ss_dssp             SHHHHHHHHHT
T ss_pred             CHHHHHHHHHC
T ss_conf             99999999986


No 14 
>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Staphylococcus aureus subsp} SCOP: c.108.1.13
Probab=46.29  E-value=10  Score=17.47  Aligned_cols=28  Identities=21%  Similarity=0.364  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHCCCCEEEE----------E-ECCCCCCCC
Q ss_conf             999999997215530378----------7-316566578
Q gi|254780180|r  202 SNLLSRLISIGIKVYFVT----------L-HVGAGTFMP  229 (360)
Q Consensus       202 ~~ll~~L~~kGi~~~~iT----------L-HVG~GTF~P  229 (360)
                      .++|+.|+++|+.++-+|          | +.|+..|-+
T Consensus       221 ~elL~~Lk~~GiklaIvTg~~~~~a~~~L~~lgL~~~Fd  259 (384)
T 1qyi_A          221 KVLLNDLKGAGFELGIATGRPYTETVVPFENLGLLPYFE  259 (384)
T ss_dssp             HHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCGGGSC
T ss_pred             HHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCHHHCC
T ss_conf             999999998799899988984899999999849854488


No 15 
>3cvj_A Putative phosphoheptose isomerase; NP_244191.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=46.13  E-value=14  Score=16.36  Aligned_cols=96  Identities=6%  Similarity=0.123  Sum_probs=55.9

Q ss_pred             ECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCC---CHHHHHHH
Q ss_conf             859999999987537980999628789989999852898468887223665740961143125527755---45789999
Q gi|254780180|r  247 IDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPGYRFRAVDILMSNFHL---PKSTLLML  323 (360)
Q Consensus       247 i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~~~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~---P~Stll~L  323 (360)
                      -+++.+++++.||++|-++|||-..  .-=+.+...+..-+...-..|+.|.-+-+..-.---+.+++.   |-||...+
T Consensus       120 ~t~~vi~a~~~AK~~G~~vIaIT~~--~~S~~~~~~h~~g~~L~~~ad~~id~~~~~gda~~~~~~~~~~~~~tst~~~~  197 (243)
T 3cvj_A          120 RNTVPVEMAIESRNIGAKVIAMTSM--KHSQKVTSRHKSGKKLYEYADVVLDNGAPVGDAGFQIANSEIYSGATSDSIGC  197 (243)
T ss_dssp             CSHHHHHHHHHHHHHTCEEEEEECH--HHHHHSCCCSTTSCCGGGGCSEEEECCCCTTSCCEECSSSSCEECCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHCCCEEEEEECC--CCCCCCCCCCCCCCCHHHHCCCEEECCCCCCCCEEECCCCCCCCCCHHHHHHH
T ss_conf             9999999999999879949998088--76755432344446256736766766777654301114677676758899999


Q ss_pred             HHHHHCHHHHHHHHHHHHHCCCEE
Q ss_conf             998719899999999999869826
Q gi|254780180|r  324 VSAFCGIEETKKMYQHAISHAYRF  347 (360)
Q Consensus       324 v~Af~G~~~~~~~Y~~Ai~~~yrF  347 (360)
                         ++....+.++.+.-.+++...
T Consensus       198 ---~i~~~~~~~~~~~l~~~g~~~  218 (243)
T 3cvj_A          198 ---FLAQALIVETLHLLVQQGFEP  218 (243)
T ss_dssp             ---HHHHHHHHHHHHHHHHTTCCC
T ss_pred             ---HHHHHHHHHHHHHHHHCCCCC
T ss_conf             ---999999999999999769997


No 16 
>1otj_A Alpha-ketoglutarate-dependent taurine dioxygenase; jelly roll motif, alpha ketoglutarate-dependent dioxygenase, oxidoreductase; 1.90A {Escherichia coli} SCOP: b.82.2.5 PDB: 1gqw_A* 1os7_A* 1gy9_A
Probab=46.02  E-value=14  Score=16.43  Aligned_cols=47  Identities=13%  Similarity=0.159  Sum_probs=27.5

Q ss_pred             CCCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECCCEEE
Q ss_conf             998781203135663788875315310143478726988799994795688
Q gi|254780180|r   18 RPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVIT   68 (360)
Q Consensus        18 ~P~~~Rd~SRLLV~~r~~~~~~~i~h~~F~dl~~~L~~gDLLV~NnTKVip   68 (360)
                      .|+.+.=.+...=+|-+.    .+++..+.+|-+.|...-+|||.|-..=|
T Consensus         8 ~pl~~~~Ga~I~gidl~~----~ls~~~~~~i~~~l~~~gvlvfr~q~lt~   54 (283)
T 1otj_A            8 TPLGPYIGAQISGADLTR----PLSDNQFEQLYHAVLRHQVVFLRDQAITP   54 (283)
T ss_dssp             EESSSSSCEEEESCCSSS----CCCHHHHHHHHHHHHHHSEEEECSCCCCH
T ss_pred             EECCCCEEEEEECCCCCC----CCCHHHHHHHHHHHHHCCEEEECCCCCCH
T ss_conf             978897489997965698----69999999999999878999989999999


No 17 
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=38.84  E-value=18  Score=15.59  Aligned_cols=86  Identities=19%  Similarity=0.129  Sum_probs=51.6

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCC-CCCCC---CCCCCCCCHHEEECHHHHHHHHHH--HHCC
Q ss_conf             74005556887899999999972155303787316566578-87410---135667700077859999999987--5379
Q gi|254780180|r  189 GSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMP-VKVED---TDDHIMHSEIGFIDAPTAQALNSV--KSRG  262 (360)
Q Consensus       189 GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~P-i~~~~---i~~h~mH~E~~~i~~~~~~~I~~a--k~~g  262 (360)
                      ..+.-|.+. +=.+.+-+.|+++|+++..+.+--   |-.+ ...+.   +.+... .--.+-|..+++...+.  ...+
T Consensus       111 ~~il~~~g~-~~~~~l~~~L~~~g~~v~~~~~Y~---~~~~~~~~~~~~~l~~~~~-~~I~f~S~ssv~~f~~~~~~~~~  185 (229)
T 3p9z_A          111 KSVLYLRAK-EIVSSLDTILLEHGIDFKQAVVYE---NKLKHLTLSEQNALKPKEK-SILIFTAISHAKAFLHYFEFLEN  185 (229)
T ss_dssp             CEEEEEEES-SCSSCHHHHHHHTTCEEEEEEEEE---EEECCCCHHHHHHHSCCTT-CEEEECSHHHHHHHHHHSCCCTT
T ss_pred             CEEEEECCC-CCCHHHHHHHHHCCCCCCEEEEEE---ECCCCCCHHHHHHHHCCCC-CEEEECCHHHHHHHHHHHHCCCC
T ss_conf             769997476-550789999986699713577877---3288779899999855899-88995499999999997303379


Q ss_pred             CEEEEECHHHHHHHHHH
Q ss_conf             80999628789989999
Q gi|254780180|r  263 GRIVSVGTTSLRLLETA  279 (360)
Q Consensus       263 ~rIiAVGTT~~R~LEs~  279 (360)
                      .+++|+|-++..+|+..
T Consensus       186 ~~vi~IG~~ta~~l~~~  202 (229)
T 3p9z_A          186 YTAISIGNTTALYLQEQ  202 (229)
T ss_dssp             CEEEESSHHHHHHHHHT
T ss_pred             CEEEEECHHHHHHHHHC
T ss_conf             79999999999999976


No 18 
>2oda_A Hypothetical protein pspto_2114; haloacid dehalogenase, phosphonoacetaldehyde hydrolase, protein binding; HET: EPE; 1.90A {Pseudomonas syringae PV}
Probab=37.82  E-value=19  Score=15.49  Aligned_cols=78  Identities=17%  Similarity=0.074  Sum_probs=39.9

Q ss_pred             CCCCHHHHHHHHHHCCCCEEEEEE------CCCCCC--CCCCCCCCCCCCCCCHHEEECHHHHHHHHHHHHCCCEEEEEC
Q ss_conf             878999999999721553037873------165665--788741013566770007785999999998753798099962
Q gi|254780180|r  198 LHFTSNLLSRLISIGIKVYFVTLH------VGAGTF--MPVKVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGRIVSVG  269 (360)
Q Consensus       198 LHFt~~ll~~L~~kGi~~~~iTLH------VG~GTF--~Pi~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~~g~rIiAVG  269 (360)
                      ..-..++|+.|+++|+.++-+|=-      .++..|  .-|..++....|-|.+-|   ..+++.++-  .....++-||
T Consensus        38 ~PGa~e~L~~Lk~~G~~~ai~Tn~~~~~~~~~l~~l~d~vv~~~d~~~~KP~P~~~---~~a~~~lg~--~~~~~~v~Vg  112 (196)
T 2oda_A           38 TPGAQNALKALRDQGMPCAWIDELPEALSTPLAAPVNDWMIAAPRPTAGWPQPDAC---WMALMALNV--SQLEGCVLIS  112 (196)
T ss_dssp             CTTHHHHHHHHHHHTCCEEEECCSCHHHHHHHHTTTTTTCEECCCCSSCTTSTHHH---HHHHHHTTC--SCSTTCEEEE
T ss_pred             CCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCHHH---HHHHHHHCC--CCCCEEEEEE
T ss_conf             76699999999975984899548719999751104799999777467889984799---999999579--9604289894


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             878998999985
Q gi|254780180|r  270 TTSLRLLETATT  281 (360)
Q Consensus       270 TT~~R~LEs~~~  281 (360)
                      -|. .-++.+.+
T Consensus       113 D~~-~Di~aA~~  123 (196)
T 2oda_A          113 GDP-RLLQSGLN  123 (196)
T ss_dssp             SCH-HHHHHHHH
T ss_pred             CCH-HHHHHHHH
T ss_conf             988-89999997


No 19 
>1oih_A Putative alkylsulfatase ATSK; non-heme Fe(II) alphaketoglutarate dependent dioxygenase, jelly roll, oxidoreductase; 1.89A {Pseudomonas putida} SCOP: b.82.2.5 PDB: 1oii_A* 1oij_B* 1vz4_A 1vz5_A 1oik_A* 1oij_A* 1oij_C*
Probab=36.33  E-value=20  Score=15.33  Aligned_cols=53  Identities=15%  Similarity=0.274  Sum_probs=25.2

Q ss_pred             CCCCCCCCCEEECCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCCEEE---CCCCHHH
Q ss_conf             468887223665740961143125527755457899999987198999999999998698261---1010222
Q gi|254780180|r  286 INPWSGFTNIFITPGYRFRAVDILMSNFHLPKSTLLMLVSAFCGIEETKKMYQHAISHAYRFY---SYGDTSL  355 (360)
Q Consensus       286 ~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~Stll~Lv~Af~G~~~~~~~Y~~Ai~~~yrF~---syGDamL  355 (360)
                      ..+..|.-.||+.+ + ...+.    +.-.+.|           ++.+..+++++.+.+|.+-   .=||.++
T Consensus       201 ~hp~tg~k~Ly~~~-~-~~~i~----~~~~~e~-----------~~ll~~L~~~~~~~~~~y~h~W~~GDlvi  256 (301)
T 1oih_A          201 VHPISGERALQLGH-F-VKRIK----GYSLADS-----------QHLFAVLQGHVTRLENTVRWRWEAGDVAI  256 (301)
T ss_dssp             ECTTTCCEEECCST-T-EEEET----TSCHHHH-----------HHHHHHHHHHHTSGGGEEEECCCTTCEEE
T ss_pred             ECCCCCCEEEEECC-C-EEEEC----CCCHHHH-----------HHHHHHHHHHHCCCCEEEEEEEECCCEEE
T ss_conf             26897641676246-2-13423----8885899-----------99999999986787749999950899899


No 20 
>3hv8_A Protein FIMX; EAL phosphodiesterase, biofilm, C-DI-GMP, hydrolase; HET: C2E; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 3hv9_A
Probab=34.99  E-value=21  Score=15.18  Aligned_cols=83  Identities=8%  Similarity=-0.030  Sum_probs=52.1

Q ss_pred             CCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHE------EECHHHHHHHHHHHHCCCEEEEECHHHH
Q ss_conf             8999999999721553037873165665788741013566770007------7859999999987537980999628789
Q gi|254780180|r  200 FTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIG------FIDAPTAQALNSVKSRGGRIVSVGTTSL  273 (360)
Q Consensus       200 Ft~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~------~i~~~~~~~I~~ak~~g~rIiAVGTT~~  273 (360)
                      -..+.+++|++.|+.++-=-.-.|...|..++.=.++--|++..+.      ....-....|..++..|..|||-|=-+.
T Consensus       154 ~~~~~i~~L~~~G~~ialddfg~~~~~l~~L~~l~~d~VKid~~~~~~i~~~~~~~~l~~li~~~~~~~~~vIaegVE~~  233 (268)
T 3hv8_A          154 QAKQLTQGLATLHCQAAISQFGCSLNPFNALKHLTVQFIKIDGSFVQDLNQVENQEILKGLIAELHEQQKLSIVPFVESA  233 (268)
T ss_dssp             HHHHHHHHHHHTTCEEEEEEETCSSSTTGGGGTCCCSEEEECGGGGSSTTSHHHHHHHHHHHHHHHHTTCEEEECCCCSH
T ss_pred             HHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHEEEEEEEEECHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCH
T ss_conf             99998877630786266504899864323311255057878489985166433668999999999984997899947949


Q ss_pred             HHHHHHHHC
Q ss_conf             989999852
Q gi|254780180|r  274 RLLETATTE  282 (360)
Q Consensus       274 R~LEs~~~~  282 (360)
                      ..++.+..-
T Consensus       234 ~~~~~l~~l  242 (268)
T 3hv8_A          234 SVLATLWQA  242 (268)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHC
T ss_conf             999999976


No 21 
>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, PSI, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus dsm 3638} SCOP: b.122.1.6
Probab=33.67  E-value=22  Score=15.04  Aligned_cols=66  Identities=21%  Similarity=0.275  Sum_probs=35.0

Q ss_pred             CCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHCC-CCCHHHCCCCCCCCCCHHHHCCCC
Q ss_conf             5643698579970578874069999603557724999726786300025442035-785222123456521143310134
Q gi|254780180|r  106 SKVIKKGDILHFFSQDGQSRLEATVIDKWNTGEILLVFSISGIELERQISLVGTI-PLPPYIARKRPIDARDYVDYQTTY  184 (360)
Q Consensus       106 ~kklk~G~~l~~~~~~~~~~l~~~vi~~~~~g~~~i~f~~~~~~~~~~L~~~G~i-PLPPYI~r~r~~~~~D~~~YQTVy  184 (360)
                      -+++++||.|.|.+     .+.++|.+.       -+|    .++.++|+..|-- -+|. .    ++-+.-.+.|...|
T Consensus        32 ~~~ik~GD~I~F~~-----~~~~~V~~v-------~~Y----~sF~ell~~e~l~~~~p~-~----~s~ee~l~~~~~~Y   90 (113)
T 1xne_A           32 LKDIKRGDKIIFND-----LIPAEVVEV-------KKY----ETFRQVLREEPIDKIFPD-K----PSFEKALKRFHNMY   90 (113)
T ss_dssp             TTTCCTTCEEEETT-----TEEEEEEEE-------EEC----SSHHHHHHHSCHHHHCSS-C----CCHHHHHHHHTTSS
T ss_pred             HHHCCCCCEEEEEC-----EEEEEEEEE-------EEC----CCHHHHHHHCCHHHHCCC-C----CCHHHHHHHHHHHC
T ss_conf             86089999999901-----089999899-------982----989999986498761899-9----98999999999778


Q ss_pred             CC----CCCCCC
Q ss_conf             56----757400
Q gi|254780180|r  185 AK----IQGSVA  192 (360)
Q Consensus       185 A~----~~GSVA  192 (360)
                      .+    +.|-||
T Consensus        91 s~e~E~~~GVvA  102 (113)
T 1xne_A           91 PKWKEYRYGVLA  102 (113)
T ss_dssp             SSSCCCCCCCEE
T ss_pred             CHHHHHHCCEEE
T ss_conf             998987548899


No 22 
>1kwm_A Procarboxypeptidase B; hydrolase; HET: CIT; 1.60A {Homo sapiens} SCOP: c.56.5.1 d.58.3.1 PDB: 3glj_A 1nsa_A 1pba_A
Probab=33.43  E-value=18  Score=15.75  Aligned_cols=132  Identities=19%  Similarity=0.211  Sum_probs=69.9

Q ss_pred             CHHHHHHHHHHCCC-CEEEEEECCCCCC-CCCCCCCCCCCCCCCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHH
Q ss_conf             99999999972155-3037873165665-788741013566770007785999999998753798099962878998999
Q gi|254780180|r  201 TSNLLSRLISIGIK-VYFVTLHVGAGTF-MPVKVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLET  278 (360)
Q Consensus       201 t~~ll~~L~~kGi~-~~~iTLHVG~GTF-~Pi~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs  278 (360)
                      |..+.+-+.+..-+ ..+|++|-+.+-+ -|-... -....-+.+...+....+++|.+..   |...-+|+..    +.
T Consensus       268 t~al~~~~~~~~~~i~~~i~~HS~g~~i~yP~g~~-~~~~~~~~~~~~~a~~~~~ai~~~~---g~~y~~g~~~----~~  339 (402)
T 1kwm_A          268 TKALADFIRNKLSSIKAYLTIHSYSQMMIYPYSYA-YKLGENNAELNALAKATVKELASLH---GTKYTYGPGA----TT  339 (402)
T ss_dssp             HHHHHHHHHHTTTTEEEEEEEEESSCEEEESCSSS-SCCCTTHHHHHHHHHHHHHHHHHHH---CCCCEEEEHH----HH
T ss_pred             HHHHHHHHHHCCCCEEEEEEECCCCCEEEECCCCC-CCCCCCHHHHHHHHHHHHHHHHHHH---CCCCCCCCCC----CC
T ss_conf             99999999856777499998068884588277788-8899797999999999999999975---9978547760----51


Q ss_pred             HHHCCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCHHHHHHH-HHHHHCHHHHHHHHHHHHHCCC
Q ss_conf             985289846888722366574096114312552775545789999-9987198999999999998698
Q gi|254780180|r  279 ATTEDGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPKSTLLML-VSAFCGIEETKKMYQHAISHAY  345 (360)
Q Consensus       279 ~~~~~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~Stll~L-v~Af~G~~~~~~~Y~~Ai~~~y  345 (360)
                      .+...|....|.-  +..+.+.|.+.+-|.==-+|.+|.+-..-. -..|+|   ++.+-++++++.|
T Consensus       340 lY~~~G~s~Dw~y--~~~~~~s~t~EL~d~g~~GF~lP~~~I~~~~~E~~~~---~~~~~~~i~~~~~  402 (402)
T 1kwm_A          340 IYPAAGGSDDWAY--DQGIRYSFTFELRDTGRYGFLLPESQIRATCEETFLA---IKYVASYVLEHLY  402 (402)
T ss_dssp             TCCCSCCHHHHHH--HTTCSEEEEEEESCSSSSGGGCCGGGHHHHHHHHHHH---HHHHHHHHHTSCC
T ss_pred             CCCCCCHHHHHHC--CCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHCCC
T ss_conf             5147756987645--4698199999958999899889989968889999999---9999999984569


No 23 
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=33.13  E-value=23  Score=14.98  Aligned_cols=22  Identities=14%  Similarity=0.434  Sum_probs=19.2

Q ss_pred             CHHHHHHHHHHHHCCCEEEEEC
Q ss_conf             5999999998753798099962
Q gi|254780180|r  248 DAPTAQALNSVKSRGGRIVSVG  269 (360)
Q Consensus       248 ~~~~~~~I~~ak~~g~rIiAVG  269 (360)
                      +++.+++++.||+.|-++||+-
T Consensus       144 s~nvi~al~~Ak~~G~~ti~lT  165 (212)
T 2i2w_A          144 SANVIKAIAAAREKGMKVITLT  165 (212)
T ss_dssp             CHHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCHHHHHHHHHHCCCEEEEEE
T ss_conf             8328999999998599899997


No 24 
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=32.28  E-value=23  Score=14.88  Aligned_cols=64  Identities=16%  Similarity=0.124  Sum_probs=44.6

Q ss_pred             CCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHEEECHHHHHHHHHHHHCCCEEEE---ECH
Q ss_conf             5688789999999997215530378731656657887410135667700077859999999987537980999---628
Q gi|254780180|r  195 TAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGRIVS---VGT  270 (360)
Q Consensus       195 TAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~~g~rIiA---VGT  270 (360)
                      +.| .++++.+++|++.|+..    +++|+.|+.|..-+.+...  |     -.++..+.+..+++.|-++.+   ||-
T Consensus       136 ~~g-~~~~e~l~~L~~aG~~~----~~~~~et~~~~~~~~i~~~--~-----~~~~~~~~i~~~~~~Gi~v~~~~i~Gl  202 (348)
T 3iix_A          136 SLG-EWPREYYEKWKEAGADR----YLLRHETANPVLHRKLRPD--T-----SFENRLNCLLTLKELGYETGAGSMVGL  202 (348)
T ss_dssp             ECC-CCCHHHHHHHHHHTCCE----EECCCBCSCHHHHHHHSTT--S-----CHHHHHHHHHHHHHTTCEEEECBEESC
T ss_pred             CCC-CCHHHHHHHHHHHCCCE----EEECHHHCCHHHEEECCCC--C-----CCCHHHHHHHHHHHCCCEEEEEEEEEC
T ss_conf             245-43089999999828967----9856344340212201147--7-----731246776677624972788899945


No 25 
>2boa_A Carboxypeptidase A4; metalloprocarboxypeptidase, X-RAY zymogen, metalloprotease, exopropeptidase, hydrolase; HET: NAG; 2.20A {Homo sapiens} SCOP: c.56.5.1 d.58.3.1
Probab=32.09  E-value=23  Score=14.86  Aligned_cols=130  Identities=22%  Similarity=0.283  Sum_probs=65.9

Q ss_pred             HHHHHHHHHCCCCEEEEEECCCCCCC-CCCCCCCCCCCCCCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHH
Q ss_conf             99999997215530378731656657-88741013566770007785999999998753798099962878998999985
Q gi|254780180|r  203 NLLSRLISIGIKVYFVTLHVGAGTFM-PVKVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATT  281 (360)
Q Consensus       203 ~ll~~L~~kGi~~~~iTLHVG~GTF~-Pi~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~  281 (360)
                      .+.+-+.+..=-..+|++|-+.+-+. |-.. .-....=+.+...+....+++|.+..   |...-+|+.+    +..+.
T Consensus       273 al~~~~~~~~~~~~~i~~HSyg~~i~~P~g~-~~~~~p~~~~l~~~a~~~a~ai~~~~---g~~Y~~g~~~----~~lY~  344 (404)
T 2boa_A          273 SVVDFIQKHGNFKGFIDLHSYSQLLMYPYGY-SVKKAPDAEELDKVARLAAKALASVS---GTEYQVGPTC----TTVYP  344 (404)
T ss_dssp             HHHHHHHHHCCEEEEEEEEESSCEEEESCSS-CSCCCTTHHHHHHHHHHHHHHHHHHH---CCCCEEEEHH----HHSCC
T ss_pred             HHHHHHHHCCCEEEEEEEECCCCEEEECCCC-CCCCCCCHHHHHHHHHHHHHHHHHHH---CCCCCCCCCC----CEEEE
T ss_conf             9999997326458999950688478837889-75668898999999999999998824---9988517563----53041


Q ss_pred             CCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCHHHHHHHHH-HHHCHHHHHHHHHHHHHCCC
Q ss_conf             28984688872236657409611431255277554578999999-87198999999999998698
Q gi|254780180|r  282 EDGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPKSTLLMLVS-AFCGIEETKKMYQHAISHAY  345 (360)
Q Consensus       282 ~~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~Stll~Lv~-Af~G~~~~~~~Y~~Ai~~~y  345 (360)
                      ..|....|.-  ...+.+.|.+.+-|.--..|++|.+...-... .|+|   ++..-+++.+|.|
T Consensus       345 a~G~s~Dw~y--~~~~~~s~t~EL~d~g~~GF~lp~~~I~p~~~E~~~g---~~~~~~~i~~~~~  404 (404)
T 2boa_A          345 ASGSSIDWAY--DNGIKFAFTFELRDTGTYGFLLPANQIIPTAEETWLG---LKTIMEHVRDNLY  404 (404)
T ss_dssp             CCSCHHHHHH--HTTCSEEEEEEESCSSSSTTSCCGGGHHHHHHHHHHH---HHHHHHHHHHTCC
T ss_pred             CCCHHHHHHH--HCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHCCC
T ss_conf             4772775643--3699289999956898899779979808889999999---9999999986589


No 26 
>1r1m_A Outer membrane protein class 4; 1.90A {Neisseria meningitidis} SCOP: d.79.7.1
Probab=31.30  E-value=23  Score=14.88  Aligned_cols=78  Identities=18%  Similarity=0.197  Sum_probs=45.3

Q ss_pred             HHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHEEECHHHHHHHHHHHHCCCEE-EEECHHHHHHHHHHHH
Q ss_conf             999999972155303787316566578874101356677000778599999999875379809-9962878998999985
Q gi|254780180|r  203 NLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGRI-VSVGTTSLRLLETATT  281 (360)
Q Consensus       203 ~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~~g~rI-iAVGTT~~R~LEs~~~  281 (360)
                      .+.+-|.++||.-.-|+- +|+|..+|+-.++.+....-...-......-+.+..+-+.++|| |-|-++..+.+.-+.+
T Consensus        74 aV~~~L~~~Gi~~~ri~~-~g~Ge~~P~~~n~t~~~~a~~~~~~~~~~~r~~~i~~~~~NRRVEi~v~~~~~~~~~P~~~  152 (164)
T 1r1m_A           74 VVANNLVSNGVPVSRISA-VGLGESQAQMTQVCEAEVAKLGAKVSKAKKREALIACIEPDRRVDVKIRSIVTRQVVPAHN  152 (164)
T ss_dssp             HHHHHHHHTTCCGGGEEE-EECTTTTCCCHHHHHHHHHTCCSSCCSSHHHHHHHHHTGGGSEEEEEEEEEC---------
T ss_pred             HHHHHHHHCCCCHHHEEE-EEECCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCEECCCCCC
T ss_conf             999999985999899899-9976768889897978874214410000004666530378898899996146113279853


No 27 
>3icj_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structure initiative; HET: KCX; 1.95A {Pyrococcus furiosus} PDB: 3etk_A* 3igh_X*
Probab=31.08  E-value=19  Score=15.48  Aligned_cols=22  Identities=9%  Similarity=0.043  Sum_probs=9.0

Q ss_pred             CCCCCCCCCCCEEECCCCCCEEE
Q ss_conf             98468887223665740961143
Q gi|254780180|r  284 GIINPWSGFTNIFITPGYRFRAV  306 (360)
Q Consensus       284 ~~~~~~~g~T~lfI~Pg~~f~~v  306 (360)
                      |.+.++. ..||.|.-+-+++-+
T Consensus       484 GsI~~Gk-~ADlVv~D~dPLe~i  505 (534)
T 3icj_A          484 GKLERGF-RAEYIILDRDPLKEM  505 (534)
T ss_dssp             SCCSTTS-BCCEEEESSCTTC--
T ss_pred             EEECCCC-CCCEEEECCCCCCCH
T ss_conf             4868898-322899899800043


No 28 
>3pfm_A Ggdef domain protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics, EAL domain; 2.91A {Pseudomonas fluorescens}
Probab=30.93  E-value=21  Score=15.22  Aligned_cols=81  Identities=10%  Similarity=-0.024  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHEE-EC-----HHH-HHHHHHHHHCCCEEEEECHHHHH
Q ss_conf             999999997215530378731656657887410135667700077-85-----999-99999875379809996287899
Q gi|254780180|r  202 SNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGF-ID-----APT-AQALNSVKSRGGRIVSVGTTSLR  274 (360)
Q Consensus       202 ~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~-i~-----~~~-~~~I~~ak~~g~rIiAVGTT~~R  274 (360)
                      .+++++|++.|+.++-=-.-.|.+.|..+..=.++--|++.++.. ++     ..- ...+.-|+.-|-+|||-|=-+--
T Consensus       139 ~~~l~~l~~~G~~i~idd~g~~~~~~~~l~~l~~~~vKld~~~~~~~~~~~~~~~~v~~i~~~a~~~~i~via~gVe~~~  218 (243)
T 3pfm_A          139 EQLTRRLRELGFSLSLQRFGGRFSMIGNLARLGLAYLKIDGSYIRDIDQESDKRLFIEAIQRAAHSIDLPLIAERVETEG  218 (243)
T ss_dssp             HHHHHHHHHHTCEEEEEEETTTGGGGGGHHHHTCSEEEECGGGGTTTTTCTHHHHHHHHHHHHHHHTTCCEEECCCCSHH
T ss_pred             HHHHHHHHHHCCCEEEECCCCCCCCHHHHHCCCHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHH
T ss_conf             99999999728966871269985435554224401310439998453312567899999999999859989998188499


Q ss_pred             HHHHHHHC
Q ss_conf             89999852
Q gi|254780180|r  275 LLETATTE  282 (360)
Q Consensus       275 ~LEs~~~~  282 (360)
                      .++.+..-
T Consensus       219 ~~~~l~~~  226 (243)
T 3pfm_A          219 ELQVIREM  226 (243)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHC
T ss_conf             99999985


No 29 
>1dtd_A Carboxypeptidase A2; carboxypeptidase A2, leech carboxypeptidase inhibitor, hydrolase/hydrolase inhibitor complex; HET: GLU; 1.65A {Homo sapiens} SCOP: c.56.5.1
Probab=30.43  E-value=25  Score=14.67  Aligned_cols=129  Identities=21%  Similarity=0.253  Sum_probs=64.3

Q ss_pred             HHHHHHHHHCCCCEEEEEECCCCCCC-CCCCCCCCCCCCCCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHH
Q ss_conf             99999997215530378731656657-88741013566770007785999999998753798099962878998999985
Q gi|254780180|r  203 NLLSRLISIGIKVYFVTLHVGAGTFM-PVKVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATT  281 (360)
Q Consensus       203 ~ll~~L~~kGi~~~~iTLHVG~GTF~-Pi~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~  281 (360)
                      .+.+-+++..--..+|++|-+..-+. |-... -..-.-+.+...+....++++.+....   ..-+|....    ..+.
T Consensus       172 al~~~~~~~~~~~~~l~~Hs~~~~i~yP~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~----~~Y~  243 (303)
T 1dtd_A          172 SIVDFIKSHGKVKAFIILHSYSQLLMFPYGYK-CTKLDDFDELSEVAQKAAQSLSRLHGT---KYKVGPICS----VIYQ  243 (303)
T ss_dssp             HHHHHHHHHCCEEEEEEEEESSCEEEESCSSC-CSCCTTHHHHHHHHHHHHHHHHHHHCC---CCEEEEHHH----HTCC
T ss_pred             HHHHHHHHCCCCEEEEEECCCCCEEEECCCCC-CCCCCCHHHHHHHHHHHHHHHHHHCCC---CCCCCCCCC----CCCC
T ss_conf             99999985256339998328986798367788-788998799999999999999972387---665478536----0223


Q ss_pred             CCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCHHHHHHHHH-HHHCHHHHHHHHHHHHHCC
Q ss_conf             28984688872236657409611431255277554578999999-8719899999999999869
Q gi|254780180|r  282 EDGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPKSTLLMLVS-AFCGIEETKKMYQHAISHA  344 (360)
Q Consensus       282 ~~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~Stll~Lv~-Af~G~~~~~~~Y~~Ai~~~  344 (360)
                      ..|....|..  +..+.+.|.+.+-|.=-..|++|.+.+..+.. +..|   ++..-+++.+.-
T Consensus       244 ~~G~~~Dw~y--~~~~~~s~T~El~~~g~~gf~~p~~~i~~~~~e~~~~---~~~~~~~~~~~p  302 (303)
T 1dtd_A          244 ASGGSIDWSY--DYGIKYSFAFELRDTGRYGFLLPARQILPTAEETWLG---LKAIMEHVRDHP  302 (303)
T ss_dssp             CTTCHHHHHH--HHTCCEEEEEEESCSSSSTTCCCGGGHHHHHHHHHHH---HHHHHHHHHHSC
T ss_pred             CCCHHHHHHH--HCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHCC
T ss_conf             6772987862--5598189999967898899859989989999999999---999999998768


No 30 
>3kw0_A Cysteine peptidase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2, plasmid; HET: LYS; 2.50A {Bacillus cereus atcc 10987}
Probab=30.00  E-value=25  Score=14.63  Aligned_cols=24  Identities=17%  Similarity=0.217  Sum_probs=19.1

Q ss_pred             EEEEEHHHHHHHCCCCCEEEEECC
Q ss_conf             531014347872698879999479
Q gi|254780180|r   41 ISDHLVSDLPAFLNSNDAIVFNNT   64 (360)
Q Consensus        41 i~h~~F~dl~~~L~~gDLLV~NnT   64 (360)
                      +.-..|.+|.+.|++||+|.++..
T Consensus        28 ~~~~~~e~~~~~LktGDIlL~~g~   51 (214)
T 3kw0_A           28 IKIDKYENLINVLKTGDIFLCSGN   51 (214)
T ss_dssp             CCEECHHHHTTTCCTTCEEEEEEC
T ss_pred             CCHHHHHHHHHCCCCCCEEEEECC
T ss_conf             578899999961689788999689


No 31 
>2r5f_A Transcriptional regulator, putative; transcription regulator, sugar-binding domain, structural genomics, PFAM04198, PSI-2; 2.10A {Pseudomonas syringae PV} SCOP: c.124.1.8
Probab=29.93  E-value=25  Score=14.61  Aligned_cols=110  Identities=9%  Similarity=0.091  Sum_probs=62.8

Q ss_pred             CCCCCHHHCCCCCCC-CCCHHHHCCCCCCC---------CCCCCC----CCCCCCCCHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf             357852221234565-21143310134567---------574005----5568878999999999721553037873165
Q gi|254780180|r  159 TIPLPPYIARKRPID-ARDYVDYQTTYAKI---------QGSVAA----PTAGLHFTSNLLSRLISIGIKVYFVTLHVGA  224 (360)
Q Consensus       159 ~iPLPPYI~r~r~~~-~~D~~~YQTVyA~~---------~GSVAA----PTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~  224 (360)
                      .+|-|-|......-+ -.....+|.++..-         -|++..    ...|..++++.++.|+++|.- ..|     .
T Consensus       121 ~l~aP~~~~s~~~~~~l~~~~~v~~~l~~~~~~diav~gIG~~~~~s~~~~~g~~~~~~~~~~l~~~gAV-Gdi-----~  194 (264)
T 2r5f_A          121 LLPSQSIEQSVESKQRIVEMEEVKEVLHRFDSITLAIVGIGELEPSQLLRNSGNYYTEDMLRVLAERGAV-GDI-----C  194 (264)
T ss_dssp             CCCCC----------CCHHHHHHHHHHHHTTTCCEEEECCEECC-------------------CTTTTCC-EEE-----T
T ss_pred             ECCCCHHCCCHHHHHHHHHCHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHCCCCCCHHHHHHHHHCCEE-EEE-----E
T ss_conf             2057010068999999985938999999997599999954788766214550687999999999878939-996-----8


Q ss_pred             CCCCCCCCCCCCCCCCCCHHEEECHHHHHHHHHHHHCCCEE-EEECHHHHHHHHHHHH
Q ss_conf             66578874101356677000778599999999875379809-9962878998999985
Q gi|254780180|r  225 GTFMPVKVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGRI-VSVGTTSLRLLETATT  281 (360)
Q Consensus       225 GTF~Pi~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~~g~rI-iAVGTT~~R~LEs~~~  281 (360)
                      |.|--..-+- -++.++.--..|+-+...+|.      .+| ||-|..=+.++-+|..
T Consensus       195 g~f~D~~G~~-v~~~~~~r~igi~l~~Lr~i~------~~I~VA~G~~K~~AI~aALr  245 (264)
T 2r5f_A          195 LRYFDAQGKP-VLEEDEEFVVSMGLGKLRSIN------RVLGLAGGVRKVQAIKGALL  245 (264)
T ss_dssp             TEEECTTSCB-C-------CEECCHHHHHTSS------EEEEECCCGGGHHHHHHHHH
T ss_pred             EEEECCCCCC-CCCCCCCCEECCCHHHHCCCC------CEEEEECCHHHHHHHHHHHH
T ss_conf             1268568989-865440235147878956799------68999667465999999983


No 32 
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii DSM2661}
Probab=29.78  E-value=21  Score=15.17  Aligned_cols=64  Identities=25%  Similarity=0.248  Sum_probs=39.7

Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHEEECHHHHHHHHHHH
Q ss_conf             10134567574005556887899999999972155303787316566578874101356677000778599999999875
Q gi|254780180|r  180 YQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGFIDAPTAQALNSVK  259 (360)
Q Consensus       180 YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~i~~~~~~~I~~ak  259 (360)
                      =|.++....||-   |-  +.|.++|..+   |+++.-    ||                 |||.=..-.++-+.|++++
T Consensus        58 aQn~~~~~~Ga~---TG--eis~~~l~~~---G~~~vi----iG-----------------HSErR~~~~e~~~~i~~~~  108 (219)
T 2h6r_A           58 AQHIDNINPGSH---TG--HILAEAIKDC---GCKGTL----IN-----------------HSEKRMLLADIEAVINKCK  108 (219)
T ss_dssp             ESCCCSCCSBSC---TT--CCCHHHHHHH---TCCEEE----ES-----------------BTTBCCBHHHHHHHHHHHH
T ss_pred             EEECCCCCCCCC---CC--HHHHHHHHHC---CCCEEE----EC-----------------CHHHHHHHCCCHHHHHHHH
T ss_conf             403686568875---10--2039999970---997899----64-----------------3255444312116388998


Q ss_pred             HCCC-EEEEECHHH
Q ss_conf             3798-099962878
Q gi|254780180|r  260 SRGG-RIVSVGTTS  272 (360)
Q Consensus       260 ~~g~-rIiAVGTT~  272 (360)
                      +.|- .|+|||++.
T Consensus       109 ~~gl~~i~Cvge~~  122 (219)
T 2h6r_A          109 NLGLETIVCTNNIN  122 (219)
T ss_dssp             HHTCEEEEEESSSH
T ss_pred             HCCCEEEEEECCHH
T ss_conf             78993799847588


No 33 
>2bo9_A Carboxypeptidase A4; metallocarboxypeptidase, X-RAY endogenous protein inhibitor, metalloprotease carboxypeptidase, hydrolase; HET: NAG; 1.6A {Homo sapiens} SCOP: c.56.5.1 PDB: 2pcu_A*
Probab=27.51  E-value=28  Score=14.33  Aligned_cols=131  Identities=21%  Similarity=0.269  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHCCCCEEEEEECCCCCC-CCCCCCCCCCCCCCCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHH
Q ss_conf             99999999721553037873165665-78874101356677000778599999999875379809996287899899998
Q gi|254780180|r  202 SNLLSRLISIGIKVYFVTLHVGAGTF-MPVKVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETAT  280 (360)
Q Consensus       202 ~~ll~~L~~kGi~~~~iTLHVG~GTF-~Pi~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~  280 (360)
                      ..+.+-+++..=-..+|.+|-+.+-+ -|-... -....-+.+...+....+.++.+..   +.-..+|+..    +..+
T Consensus       176 ~al~~~~~~~~~~~~~i~~Hs~~~~i~yP~~~~-~~~~p~~~~~~~~~~~~a~~~~~~~---g~~y~~g~~~----~~~Y  247 (308)
T 2bo9_A          176 KSVVDFIQKHGNFKGFIDLHSYSQLLMYPYGYS-VKKAPDAEELDKVARLAAKALASVS---GTEYQVGPTC----TTVY  247 (308)
T ss_dssp             HHHHHHHHHHCCEEEEEEEEESSSEEEESCSSC-SSCCTTHHHHHHHHHHHHHHHHHHH---CCCCEEEEHH----HHTC
T ss_pred             HHHHHHHHHCCCEEEEEEECCCCCEEEECCCCC-CCCCCCHHHHHHHHHHHHHHHHHHH---CCCCCCCCCC----CCCC
T ss_conf             999999983776038887236885687268888-7779898999999999999999841---9887405576----7101


Q ss_pred             HCCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCHHHHHHHHH-HHHCHHHHHHHHHHHHHCCC
Q ss_conf             528984688872236657409611431255277554578999999-87198999999999998698
Q gi|254780180|r  281 TEDGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPKSTLLMLVS-AFCGIEETKKMYQHAISHAY  345 (360)
Q Consensus       281 ~~~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~Stll~Lv~-Af~G~~~~~~~Y~~Ai~~~y  345 (360)
                      ...|....|.-  +..+.+.+.+.+-|.=-..|++|.+...-+.. .+.|   ++..-+++.+|-|
T Consensus       248 ~~~G~~~Dw~y--~~~~~~a~t~El~~~g~~gf~~p~~~i~~~~~e~~~~---~~~~~~~i~~~~~  308 (308)
T 2bo9_A          248 PASGSSIDWAY--DNGIKFAFTFELRDTGTYGFLLPANQIIPTAEETWLG---LKTIMEHVRDNLY  308 (308)
T ss_dssp             CCCSCHHHHHH--HTTCCEEEEEEESCSSSSTTCCCGGGHHHHHHHHHHH---HHHHHHHHHTTCC
T ss_pred             CCCCCHHHHHH--HCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHCCC
T ss_conf             46883776761--2698089999957898899769989948889999999---9999999986589


No 34 
>1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1
Probab=27.29  E-value=28  Score=14.30  Aligned_cols=64  Identities=20%  Similarity=0.152  Sum_probs=37.0

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHEEECHHHHHHHHHHHH
Q ss_conf             01345675740055568878999999999721553037873165665788741013566770007785999999998753
Q gi|254780180|r  181 QTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGFIDAPTAQALNSVKS  260 (360)
Q Consensus       181 QTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~  260 (360)
                      |.++....|+-   |  =+.+.+++.   +-|+++.-|    |                 |+|.=..-.++.+.++++++
T Consensus        62 Q~~~~~~~Ga~---T--G~is~~~l~---~~g~~~vii----g-----------------HsErR~~~~e~~~~v~~a~~  112 (226)
T 1w0m_A           62 QGADVEAGGAH---T--AHVSLENIK---EAGGSGVIL----N-----------------HSEAPLKLNDLARLVAKAKS  112 (226)
T ss_dssp             SCCSBSSCSSC---T--TCCBHHHHH---HHTCCEEEE----C-----------------CTTSCCBHHHHHHHHHHHHH
T ss_pred             ECCCCCCCCCC---C--CHHHHHHHH---HCCCCEEEE----C-----------------CHHHHHHHCHHHHHHHHHHH
T ss_conf             04788789887---0--665699998---759979997----4-----------------36877651006899999998


Q ss_pred             CCCE-EEEECHHHH
Q ss_conf             7980-999628789
Q gi|254780180|r  261 RGGR-IVSVGTTSL  273 (360)
Q Consensus       261 ~g~r-IiAVGTT~~  273 (360)
                      .|-. |+|||++..
T Consensus       113 ~gl~~IvCvge~~e  126 (226)
T 1w0m_A          113 LGLDVVVCAPDPRT  126 (226)
T ss_dssp             TTCEEEEEESSHHH
T ss_pred             CCCEEEEECCCCHH
T ss_conf             89989997587199


No 35 
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=26.19  E-value=29  Score=14.17  Aligned_cols=21  Identities=14%  Similarity=0.107  Sum_probs=14.7

Q ss_pred             CHHHHHHHHHHHHCCCEEEEE
Q ss_conf             599999999875379809996
Q gi|254780180|r  248 DAPTAQALNSVKSRGGRIVSV  268 (360)
Q Consensus       248 ~~~~~~~I~~ak~~g~rIiAV  268 (360)
                      ++...++++.||+.|-++|++
T Consensus       123 s~nii~a~~~Ak~~g~~~i~l  143 (188)
T 1tk9_A          123 SPNVLEALKKAKELNMLCLGL  143 (188)
T ss_dssp             CHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCHHHHHHHHHHCCCEEEEE
T ss_conf             955778999999879989999


No 36 
>3gt2_A Putative uncharacterized protein; P60 domain, antigen, unknown function; HET: EDO; 1.75A {Mycobacterium avium subsp}
Probab=24.11  E-value=32  Score=13.90  Aligned_cols=15  Identities=13%  Similarity=0.175  Sum_probs=8.8

Q ss_pred             HHCCCCCEEEEECCC
Q ss_conf             726988799994795
Q gi|254780180|r   51 AFLNSNDAIVFNNTK   65 (360)
Q Consensus        51 ~~L~~gDLLV~NnTK   65 (360)
                      +-++||||++|+...
T Consensus        88 ~~~~pGDLvff~~~~  102 (142)
T 3gt2_A           88 QQARKGDLIFYGPEG  102 (142)
T ss_dssp             GGCCTTCEEEESGGG
T ss_pred             CCCCCCEEEEECCCC
T ss_conf             579998189956999


No 37 
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A
Probab=24.10  E-value=32  Score=13.90  Aligned_cols=67  Identities=18%  Similarity=0.285  Sum_probs=43.4

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHEEECHHHHHHHHHHHHCCCEEEEEC
Q ss_conf             40055568878999999999721553037873165665788741013566770007785999999998753798099962
Q gi|254780180|r  190 SVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGRIVSVG  269 (360)
Q Consensus       190 SVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~~g~rIiAVG  269 (360)
                      ++++--||..+-+.|.+.|+++|+++..      +||+..-.+          .|-.+....++.+.+-+.. +=|+-.|
T Consensus         5 ~igsDhaG~~lK~~l~~~L~~~g~ev~D------~G~~~~~~~----------DYpd~a~~~a~~v~~~~~~-~GIliCG   67 (149)
T 2vvr_A            5 AFGCDHVGFILKHEIVAHLVERGVEVID------KGTWSSERT----------DYPHYASQVALAVAGGEVD-GGILICG   67 (149)
T ss_dssp             EEEECTTGGGGHHHHHHHHHHTTCEEEE------CCCCSSSCC----------CHHHHHHHHHHHHHTTSSS-EEEEEES
T ss_pred             EEEECCHHHHHHHHHHHHHHHCCCEEEE------CCCCCCCCC----------CCCHHHHHHHHHHCCCCCC-EEEEECC
T ss_conf             9975870799999999999987998997------899835577----------8407899999986057754-2589558


Q ss_pred             HHHH
Q ss_conf             8789
Q gi|254780180|r  270 TTSL  273 (360)
Q Consensus       270 TT~~  273 (360)
                      |=.=
T Consensus        68 tG~G   71 (149)
T 2vvr_A           68 TGVG   71 (149)
T ss_dssp             SSHH
T ss_pred             CCCH
T ss_conf             9846


No 38 
>1jid_A Signal recognition particle 19 kDa protein; signal recognition particle (SRP), protein-RNA complex, GGAG tetraloop, signaling protein/RNA complex; HET: 5BU A23; 1.80A {Homo sapiens} SCOP: d.201.1.1 PDB: 3ktv_B* 1mfq_B* 1ry1_B* 2go5_B 2j37_B
Probab=23.51  E-value=33  Score=13.82  Aligned_cols=19  Identities=26%  Similarity=0.511  Sum_probs=8.7

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf             400555688789999999997215
Q gi|254780180|r  190 SVAAPTAGLHFTSNLLSRLISIGI  213 (360)
Q Consensus       190 SVAAPTAGLHFt~~ll~~L~~kGi  213 (360)
                      ||..||+     .++.+.++.-|+
T Consensus        40 aV~~Pt~-----~EI~~a~~~Lgl   58 (128)
T 1jid_A           40 AVENPTA-----TEIQDVCSAVGL   58 (128)
T ss_dssp             CBSSCCH-----HHHHHHHHHTTC
T ss_pred             HCCCCCH-----HHHHHHHHHCCC
T ss_conf             4679899-----999999998599


No 39 
>1pca_A Procarboxypeptidase A PCPA; hydrolase(C-terminal peptidase); HET: CIT; 2.00A {Sus scrofa} SCOP: d.58.3.1 PDB: 1pyt_A
Probab=23.45  E-value=14  Score=16.49  Aligned_cols=114  Identities=20%  Similarity=0.272  Sum_probs=61.0

Q ss_pred             HHHHHHHHCCCCEEEEEECCCCCC-CCC--CCCCCCCCCCCCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHH
Q ss_conf             999999721553037873165665-788--74101356677000778599999999875379809996287899899998
Q gi|254780180|r  204 LLSRLISIGIKVYFVTLHVGAGTF-MPV--KVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETAT  280 (360)
Q Consensus       204 ll~~L~~kGi~~~~iTLHVG~GTF-~Pi--~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~  280 (360)
                      +.+-++.++--.++|++|-+.+-+ -|-  +.+...+   +.+...+....+.+|....   |.-..+|+.. .+|   +
T Consensus       274 l~~~~~~~~~i~~~i~~HS~g~~i~yP~g~~~~~~~~---~~~l~~~~~~~a~ai~~~~---g~~y~~g~~~-~~l---Y  343 (403)
T 1pca_A          274 ITDFVKNNGNIKAFISIHSYSQLLLYPYGYKTQSPAD---KSELNQIAKSAVAALKSLY---GTSYKYGSII-TVI---Y  343 (403)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHCCCEEEEEEECCCCCEEEECCCCCCCCCCC---HHHHHHHHHHHHHHHHHHH---CCCCCCCCCC-CCC---C
T ss_conf             9999872267479999537897688367787779989---9999999999999988862---9877548865-634---2


Q ss_pred             HCCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCHHHHHHH-HHHHHC
Q ss_conf             5289846888722366574096114312552775545789999-998719
Q gi|254780180|r  281 TEDGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPKSTLLML-VSAFCG  329 (360)
Q Consensus       281 ~~~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~Stll~L-v~Af~G  329 (360)
                      ...|....|.-.  ..|.+.|.+.+-|.=-.+|++|.|-..-. -..++|
T Consensus       344 ~~~G~s~Dw~y~--~~~~~s~t~EL~~~g~~gF~lP~~~I~p~~~E~~~~  391 (403)
T 1pca_A          344 QASGGVIDWTYN--QGIKYSFSFELRDTGRRGFLLPASQIIPTAQETWLA  391 (403)
T ss_dssp             --------------------------------------------------
T ss_pred             CCCCCHHHHHCC--CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             477667777531--799389999975898899789999999999999999


No 40 
>3k7p_A Ribose 5-phosphate isomerase; pentose phosphate pathway, type B ribose 5-phosphate isomera (RPIB), R5P; 1.40A {Trypanosoma cruzi strain cl brener} PDB: 3k7s_A* 3k7o_A* 3k8c_A*
Probab=23.03  E-value=33  Score=13.76  Aligned_cols=73  Identities=11%  Similarity=0.064  Sum_probs=47.1

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHEEECHHHHHHHHHHHHCCCEEEEE
Q ss_conf             74005556887899999999972155303787316566578874101356677000778599999999875379809996
Q gi|254780180|r  189 GSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGRIVSV  268 (360)
Q Consensus       189 GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~~g~rIiAV  268 (360)
                      =++++=-||.++-+.|.+-|+++|+++..+    |.||...-.++          |-.+....++.|.+-+.. +=|+-.
T Consensus        25 I~IgsDHaG~~lK~~l~~~L~~~g~ev~D~----~~G~~~~~~~D----------Ypd~a~~va~~V~~~~~~-~GIliC   89 (179)
T 3k7p_A           25 VAIGTDHPAFAIHENLILYVKEAGDEFVPV----YCGPKTAESVD----------YPDFASRVAEMVARKEVE-FGVLAA   89 (179)
T ss_dssp             EEEEECTGGGGGHHHHHHHHHHTCTTEEEE----ECSCSSSSCCC----------HHHHHHHHHHHHHTTSSS-EEEEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHHHCCCEEEEC----CCCCCCCCCCC----------CHHHHHHHHHHHHHCCCE-EEEEEC
T ss_conf             899828628999999999999869979975----88777456678----------378999999998740440-689966


Q ss_pred             CHHHHHHH
Q ss_conf             28789989
Q gi|254780180|r  269 GTTSLRLL  276 (360)
Q Consensus       269 GTT~~R~L  276 (360)
                      ||=.==++
T Consensus        90 GtGiG~sI   97 (179)
T 3k7p_A           90 GSGIGMSI   97 (179)
T ss_dssp             SSSHHHHH
T ss_pred             CCCHHHHH
T ss_conf             99628888


No 41 
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=22.83  E-value=24  Score=14.72  Aligned_cols=184  Identities=20%  Similarity=0.152  Sum_probs=85.4

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf             77249997267863000254420357852221234565211433101345675740055568878999999999721553
Q gi|254780180|r  136 TGEILLVFSISGIELERQISLVGTIPLPPYIARKRPIDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKV  215 (360)
Q Consensus       136 ~g~~~i~f~~~~~~~~~~L~~~G~iPLPPYI~r~r~~~~~D~~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~  215 (360)
                      ....++.|+.+. ...+.++..-+...|.-|--..- ++.+.+ .-..++++.+-+-||--++=  -.+|.++.+.-...
T Consensus        88 ~~DVvIDFS~p~-~~~~~~~~~~~~~~plViGTTG~-~~~~~~-~i~~~~~~~~il~a~NfS~G--v~ll~~~~~~aa~~  162 (288)
T 3ijp_A           88 NTEGILDFSQPQ-ASVLYANYAAQKSLIHIIGTTGF-SKTEEA-QIADFAKYTTIVKSGNMSLG--VNLLANLVKRAAKA  162 (288)
T ss_dssp             SCSEEEECSCHH-HHHHHHHHHHHHTCEEEECCCCC-CHHHHH-HHHHHHTTSEEEECSCCCHH--HHHHHHHHHHHHHH
T ss_pred             CCCEEEECCCCH-HHHHHHHHHHHCCCCEEEEECCC-CHHHHH-HHHHHHHCCCEEEECCCHHH--HHHHHHHHHHHHHH
T ss_conf             488899899806-76889999987396079830554-422599-99998533988886640077--99999999999987


Q ss_pred             EEEEEECCCCCCCCCCCCCCCCCCCCCHHEEECHHHHHHHHHHHHCCCE-----EEEECHHHHHHHHHHHHCCCC-----
Q ss_conf             0378731656657887410135667700077859999999987537980-----999628789989999852898-----
Q gi|254780180|r  216 YFVTLHVGAGTFMPVKVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGR-----IVSVGTTSLRLLETATTEDGI-----  285 (360)
Q Consensus       216 ~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~~g~r-----IiAVGTT~~R~LEs~~~~~~~-----  285 (360)
                          |    +.  .-..+=++-|  |...---|.-||..+.+.-++++.     +.-.+.+..+    ..+..+.     
T Consensus       163 ----l----~~--~~dieI~E~H--H~~K~DaPSGTA~~la~~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~i~s  226 (288)
T 3ijp_A          163 ----L----DD--DFDIEIYEMH--HANKVDSPSGTALLLGQAAAEGRNIMLKNVSVNGRSGHT----GKREKGTIGFAC  226 (288)
T ss_dssp             ----S----CT--TSEEEEEEEE--CTTCCCSSCHHHHHHHHHHHHHTTSCHHHHEEECGGGCC----SCCCTTCEEEEE
T ss_pred             ----C----CC--CCCCEEEEEC--CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEECCCCCCC----CCCCCCCCCEEE
T ss_conf             ----3----52--2250888703--456888971999999999997336543322011444776----777788622467


Q ss_pred             CCCC--CCC-CCEEECCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCCEEECCCCHH
Q ss_conf             4688--872-23665740961143125527755457899999987198999999999998698261101022
Q gi|254780180|r  286 INPW--SGF-TNIFITPGYRFRAVDILMSNFHLPKSTLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTS  354 (360)
Q Consensus       286 ~~~~--~g~-T~lfI~Pg~~f~~vd~LiTNFH~P~Stll~Lv~Af~G~~~~~~~Y~~Ai~~~yrF~syGDam  354 (360)
                      ++.+  -|+ |=+|-.||=.+       +=-|.=.|--     +|+  +=...|-++...+.-.+|++-|-+
T Consensus       227 ~R~G~~vg~H~V~f~~~~E~l-------~i~H~a~~R~-----~Fa--~Gal~Aa~~l~~~~~Gly~m~DvL  284 (288)
T 3ijp_A          227 SRGGTVIGDHSITFAGENERI-------VLSHIAQERS-----IFA--NGALKAALWAKNHENGLYSMLDVL  284 (288)
T ss_dssp             EECTTCCEEEEEEEEETTEEE-------EEEEEECCTH-----HHH--HHHHHHHHHHTTCCSEEECHHHHH
T ss_pred             EECCCCCEEEEEEECCCCCEE-------EEEEEECCHH-----HHH--HHHHHHHHHHHCCCCCEECHHHHC
T ss_conf             606997678999970799279-------9999969888-----889--999999999847998786366745


No 42 
>3jyv_B 40S ribosomal protein S0(A); eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} PDB: 1s1h_B
Probab=22.60  E-value=34  Score=13.70  Aligned_cols=21  Identities=14%  Similarity=0.177  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHCCCEEEEECH
Q ss_conf             999999987537980999628
Q gi|254780180|r  250 PTAQALNSVKSRGGRIVSVGT  270 (360)
Q Consensus       250 ~~~~~I~~ak~~g~rIiAVGT  270 (360)
                      ....+|++|+.-|=+|||+--
T Consensus       120 ~~~~ai~EA~~l~IPvI~ivD  140 (193)
T 3jyv_B          120 SDAQAIKEASYVNIPVIALTD  140 (193)
T ss_dssp             TSHHHHHHHHHTTCCEEEEEC
T ss_pred             CCHHHHHHHHHCCCCEEEEEC
T ss_conf             641666778756998787506


No 43 
>1omh_A TRWC protein; protein-DNA complex, bacterial conjugation, relaxase, DNA replication, transferase/DNA complex; HET: DNA; 1.95A {Escherichia coli} SCOP: d.89.1.5 PDB: 1osb_A* 1qx0_A* 1s6m_A* 1zm5_A* 2cdm_A
Probab=22.58  E-value=34  Score=13.70  Aligned_cols=31  Identities=19%  Similarity=0.404  Sum_probs=21.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf             55568878999999999721553037873165665
Q gi|254780180|r  193 APTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTF  227 (360)
Q Consensus       193 APTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF  227 (360)
                      ++.+|-.+..+|-.+|++-|+++..    .+-|.|
T Consensus       189 ~~~~g~~y~a~La~~l~~lGy~~~~----~~~g~~  219 (293)
T 1omh_A          189 TRYLGAVYNAELAHELQKLGYQLRY----GKDGNF  219 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCEEE----CSSSCE
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEE----CCCCCE
T ss_conf             9999999999999999975857753----588833


No 44 
>3ofo_B 30S ribosomal protein S2; protein biosynthesis, ribosomes, RNA, tRNA, transfer, eryThr ketolide, macrolide, antibiotic, EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 3fih_B* 2wwl_B 3ofp_B 3i1m_B 1vs7_B* 3e1a_B 3e1c_B 1vs5_B 3i1o_B 3i1q_B 3i1s_B 3i1z_B 3i21_B 3kc4_B 3or9_B 3ora_B 2qal_B* 1p87_B 2aw7_B 2avy_B ...
Probab=21.76  E-value=16  Score=16.01  Aligned_cols=22  Identities=14%  Similarity=0.149  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHCCCEEEEECHH
Q ss_conf             9999999875379809996287
Q gi|254780180|r  250 PTAQALNSVKSRGGRIVSVGTT  271 (360)
Q Consensus       250 ~~~~~I~~ak~~g~rIiAVGTT  271 (360)
                      ....+|++|.+-|-+|||+--|
T Consensus       160 ~~~~ai~Ea~~l~IPvI~ivDT  181 (218)
T 3ofo_B          160 HEHIAIKEANNLGIPVFAIVDT  181 (218)
T ss_dssp             GGHHHHHHHHHTTCCEEEECCT
T ss_pred             HHHHHHHHHHHCCCCEEEEEEC
T ss_conf             3179999999859977998507


No 45 
>2jyx_A Lipoprotein SPR; solution structure, construct optimized, membrane, palmitate, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli K12} PDB: 2k1g_A
Probab=21.40  E-value=36  Score=13.54  Aligned_cols=14  Identities=21%  Similarity=0.418  Sum_probs=8.0

Q ss_pred             HCCCCCEEEEECCC
Q ss_conf             26988799994795
Q gi|254780180|r   52 FLNSNDAIVFNNTK   65 (360)
Q Consensus        52 ~L~~gDLLV~NnTK   65 (360)
                      -++||||++|+..+
T Consensus        67 ~~~pGDlvff~~~~   80 (136)
T 2jyx_A           67 NLRTGDLVLFRAGS   80 (136)
T ss_dssp             TCCTTEEEEEECSS
T ss_pred             CCCCCCEEEECCCC
T ss_conf             68999899979899


No 46 
>3kzp_A LMO0111 protein, putative diguanylate cyclase/phosphodiesterase; EAL-domain, structural genomics, PSI-2, protein structure initiative; 2.00A {Listeria monocytogenes}
Probab=21.34  E-value=30  Score=14.11  Aligned_cols=90  Identities=12%  Similarity=0.101  Sum_probs=52.8

Q ss_pred             CCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHEE---ECHHH----HH-HHHHHHHCCCEEEEECHH
Q ss_conf             89999999997215530378731656657887410135667700077---85999----99-999875379809996287
Q gi|254780180|r  200 FTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGF---IDAPT----AQ-ALNSVKSRGGRIVSVGTT  271 (360)
Q Consensus       200 Ft~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~---i~~~~----~~-~I~~ak~~g~rIiAVGTT  271 (360)
                      +-.+.+++|++.|+.++-=-...|..+|.-+..-.++-.|++.+...   .+.+.    ++ .+.-|+..|-+|||-|=-
T Consensus       129 ~~~~~l~~l~~~G~~ialDdfG~g~~~~~~l~~l~~d~iKid~~~~~~~~~~~~~~~~~v~~i~~~a~~~~~~vIaegVE  208 (235)
T 3kzp_A          129 FILNKIKVIHGLGYHIAIDDVSCGLNSLERVMSYLPYIIEIKFSLIHFKNIPLEDLLLFIKAWANFAQKNKLDFVVEGIE  208 (235)
T ss_dssp             HHHHHHHHHHHTTCEEEECSTTSTTCCHHHHHHHGGGCSEEEEEGGGGTTSCHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred             HHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHCCCCEECCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             99999999997699688525798741077885279867614156776530231126899999999999869989997189


Q ss_pred             HHHHHHHHHHCCCCCCCCCC
Q ss_conf             89989999852898468887
Q gi|254780180|r  272 SLRLLETATTEDGIINPWSG  291 (360)
Q Consensus       272 ~~R~LEs~~~~~~~~~~~~g  291 (360)
                      +-..++.+.. -| +.-.+|
T Consensus       209 t~~~~~~l~~-lG-vd~~QG  226 (235)
T 3kzp_A          209 TKETMTLLES-HG-VSIFQG  226 (235)
T ss_dssp             STHHHHHHHH-TT-CCSCEE
T ss_pred             CHHHHHHHHH-CC-CCEEEC
T ss_conf             5999999998-69-999644


No 47 
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, alternative splicing, hydrolase, metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Probab=21.32  E-value=36  Score=13.53  Aligned_cols=91  Identities=13%  Similarity=0.038  Sum_probs=46.6

Q ss_pred             CCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHEEE------CH--HHHHHHHHHHHCCCEEEEECHH
Q ss_conf             899999999972155303787316566578874101356677000778------59--9999999875379809996287
Q gi|254780180|r  200 FTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGFI------DA--PTAQALNSVKSRGGRIVSVGTT  271 (360)
Q Consensus       200 Ft~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~i------~~--~~~~~I~~ak~~g~rIiAVGTT  271 (360)
                      -..++|+.|+++|+.++-+|-     +-.+.-...+.++.....++..      |+  .-...+.+..-....++-||=+
T Consensus        72 gv~e~L~~Lk~~Gi~laI~S~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~pkp~~~~~~l~~l~i~p~~~l~igDs  146 (187)
T 2wm8_A           72 EVPEVLKRLQSLGVPGAAASR-----TSEIEGANQLLELFDLFRYFVHREIYPGSKITHFERLQQKTGIPFSQMIFFDDE  146 (187)
T ss_dssp             THHHHHHHHHHHTCCEEEEEC-----CSCHHHHHHHHHHTTCTTTEEEEEESSSCHHHHHHHHHHHHCCCGGGEEEEESC
T ss_pred             HHHHHHHHHHHCCCEEEEECC-----CCCHHHHHHHHHHCCCHHEEECCCCCCCCCCHHHHHHHHHHCCCHHHEEEECCC
T ss_conf             599999999988980895058-----970899998876336112121022477656368999999968987898996485


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCE
Q ss_conf             899899998528984688872236657409611
Q gi|254780180|r  272 SLRLLETATTEDGIINPWSGFTNIFITPGYRFR  304 (360)
Q Consensus       272 ~~R~LEs~~~~~~~~~~~~g~T~lfI~Pg~~f~  304 (360)
                      . +-+|+|..        .|-+-+.+.-||...
T Consensus       147 ~-~Di~aA~~--------aGi~~i~V~~G~t~~  170 (187)
T 2wm8_A          147 R-RNIVDVSK--------LGVTCIHIQNGMNLQ  170 (187)
T ss_dssp             H-HHHHHHHT--------TTCEEEECSSSCCHH
T ss_pred             H-HHHHHHHH--------CCCEEEEECCCCCHH
T ss_conf             8-78999998--------699899969999989


No 48 
>1u02_A Trehalose-6-phosphate phosphatase related protein; structural genomics, PSI, protein structure initiative; 1.92A {Thermoplasma acidophilum} SCOP: c.108.1.15
Probab=21.32  E-value=36  Score=13.52  Aligned_cols=10  Identities=10%  Similarity=0.215  Sum_probs=7.1

Q ss_pred             CEEEEECHHH
Q ss_conf             8099962878
Q gi|254780180|r  263 GRIVSVGTTS  272 (360)
Q Consensus       263 ~rIiAVGTT~  272 (360)
                      ..++|+|=..
T Consensus       172 ~~v~~~GD~~  181 (239)
T 1u02_A          172 RPAIIAGDDA  181 (239)
T ss_dssp             SCEEEEESSH
T ss_pred             CCEEEECCCC
T ss_conf             6769936987


No 49 
>1o1x_A Ribose-5-phosphate isomerase RPIB; TM1080, structural genomics, JCSG, PSI, protein structure initiative; 1.90A {Thermotoga maritima} SCOP: c.121.1.1
Probab=20.71  E-value=27  Score=14.41  Aligned_cols=65  Identities=20%  Similarity=0.222  Sum_probs=42.0

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHEEECHHHHHHHHHHHHCCCEEEE-E
Q ss_conf             400555688789999999997215530378731656657887410135667700077859999999987537980999-6
Q gi|254780180|r  190 SVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGRIVS-V  268 (360)
Q Consensus       190 SVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~~g~rIiA-V  268 (360)
                      ++++--||..+-++|.+.|+++|+++.    .+|  |+..-.+          .|-.+..+.++.+.+-+.  .|-|. .
T Consensus        16 ~igsDHaG~~lK~~l~~~L~~~g~ev~----D~G--~~~~~~~----------DYpd~a~~va~~V~~~~~--~~GIliC   77 (155)
T 1o1x_A           16 AIASDHAAFELKEKVKNYLLGKGIEVE----DHG--TYSEESV----------DYPDYAKKVVQSILSNEA--DFGILLC   77 (155)
T ss_dssp             EEEECSTTHHHHHHHHHHHHHTTCEEE----ECC--CCSSSCC----------CHHHHHHHHHHHHHTTSC--SEEEEEE
T ss_pred             EEEECCHHHHHHHHHHHHHHHCCCEEE----ECC--CCCCCCC----------CCHHHHHHHHHHHHCCCC--CEEEEEC
T ss_conf             997487179999999999998799899----789--9987777----------831789999999734776--3479964


Q ss_pred             CHHH
Q ss_conf             2878
Q gi|254780180|r  269 GTTS  272 (360)
Q Consensus       269 GTT~  272 (360)
                      ||=.
T Consensus        78 GtG~   81 (155)
T 1o1x_A           78 GTGL   81 (155)
T ss_dssp             SSSH
T ss_pred             CCCH
T ss_conf             8987


No 50 
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=20.26  E-value=38  Score=13.37  Aligned_cols=21  Identities=24%  Similarity=0.314  Sum_probs=13.4

Q ss_pred             CHHHHHHHHHHHHCCCEEEEE
Q ss_conf             599999999875379809996
Q gi|254780180|r  248 DAPTAQALNSVKSRGGRIVSV  268 (360)
Q Consensus       248 ~~~~~~~I~~ak~~g~rIiAV  268 (360)
                      ++..+.+++.||+.|-++|++
T Consensus       126 S~nii~a~~~Ak~~g~~~i~l  146 (199)
T 1x92_A          126 SANVIQAIQAAHDREMLVVAL  146 (199)
T ss_dssp             CHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCHHHHHHHHHHCCCEEEEE
T ss_conf             945789999999869969999


No 51 
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=20.21  E-value=13  Score=16.59  Aligned_cols=24  Identities=21%  Similarity=0.537  Sum_probs=12.3

Q ss_pred             EECCCCCCCHH-HHHHCCCCCCCCC
Q ss_conf             81124866101-1221156436985
Q gi|254780180|r   90 LHMRVSPNSWS-VYARPSKVIKKGD  113 (360)
Q Consensus        90 l~~~~~~~~w~-~l~kp~kklk~G~  113 (360)
                      +++-+.+..|. |.+.|++|...|.
T Consensus        51 ~lr~lgp~pw~~aYvqPsrRP~DgR   75 (298)
T 1j5w_A           51 FFGSLRKGPWKVAYVQPSRRPTDGR   75 (298)
T ss_dssp             HTGGGCSSCEEEEEEEEEECCC---
T ss_pred             HHHHCCCCCCEEEEECCCCCCCCCC
T ss_conf             9863198763266424677999887


No 52 
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer, structural genomics; 2.80A {Thermus thermophilus HB8}
Probab=20.15  E-value=35  Score=13.56  Aligned_cols=57  Identities=26%  Similarity=0.270  Sum_probs=38.4

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHH
Q ss_conf             16566578874101356677000778599999999875379809996287899899998
Q gi|254780180|r  222 VGAGTFMPVKVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETAT  280 (360)
Q Consensus       222 VG~GTF~Pi~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~  280 (360)
                      |-+-|++|+.-.+..+..-+.+.--. ...++.|....+.|++| =|||+++..-|-..
T Consensus       404 v~IPtn~p~~R~d~~d~v~~t~~~k~-~Ai~~ei~~~~~~grPV-LvgT~sIe~Se~ls  460 (997)
T 2ipc_A          404 VVVPTNRPVIRKDFPDVVYRTEKGKF-YAVVEEIAEKYERGQPV-LVGTISIEKSERLS  460 (997)
T ss_dssp             EECCCSSCCCCEEEEEEEESSHHHHH-HHHHHHHHHHHHHTCCE-EEECSSHHHHHHHH
T ss_pred             EECCCCCCCCEEECCCEEECCHHHHH-HHHHHHHHHHHHCCCCE-EEEECCHHHHHHHH
T ss_conf             96168887620327997887899999-99999999999749988-99758558889999


Done!