Query gi|254780180|ref|YP_003064593.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 360 No_of_seqs 165 out of 1731 Neff 6.3 Searched_HMMs 23785 Date Mon May 23 08:44:52 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780180.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1vky_A S-adenosylmethionine:tR 100.0 0 0 1023.0 25.3 335 1-357 13-347 (347) 2 1yy3_A S-adenosylmethionine:tR 100.0 0 0 1020.7 26.5 341 1-357 5-346 (346) 3 1wdi_A Hypothetical protein TT 100.0 0 0 1021.1 24.5 341 1-357 2-345 (345) 4 3o2g_A Gamma-butyrobetaine dio 84.8 0.62 2.6E-05 26.2 3.2 21 258-278 224-244 (388) 5 2wbq_A L-arginine beta-hydroxy 83.6 0.75 3.2E-05 25.6 3.2 14 197-210 201-214 (358) 6 2og5_A Putative oxygenase; non 82.6 0.87 3.6E-05 25.1 3.2 11 349-359 297-307 (357) 7 1nx8_A CARC, carbapenem syntha 77.5 1.6 6.8E-05 23.2 3.2 26 333-358 218-246 (273) 8 3eat_X Pyoverdine biosynthesis 76.4 1.8 7.6E-05 22.9 3.2 29 331-359 226-257 (293) 9 2q4a_A Clavaminate synthase-li 61.4 5.8 0.00025 19.2 3.2 18 342-359 291-309 (330) 10 2vf7_A UVRA2, excinuclease ABC 50.3 4.9 0.00021 19.7 1.3 29 193-221 407-440 (842) 11 2r6f_A Excinuclease ABC subuni 49.8 5.1 0.00021 19.6 1.3 32 192-223 531-567 (972) 12 1aye_A PCPA2, procarboxypeptid 47.5 11 0.00047 17.1 2.8 130 203-345 270-401 (401) 13 1jr2_A Uroporphyrinogen-III sy 46.9 14 0.00059 16.4 4.2 76 201-279 169-256 (286) 14 1qyi_A ZR25, hypothetical prot 46.3 10 0.00043 17.5 2.4 28 202-229 221-259 (384) 15 3cvj_A Putative phosphoheptose 46.1 14 0.00061 16.4 6.0 96 247-347 120-218 (243) 16 1otj_A Alpha-ketoglutarate-dep 46.0 14 0.00059 16.4 3.1 47 18-68 8-54 (283) 17 3p9z_A Uroporphyrinogen III co 38.8 18 0.00078 15.6 4.7 86 189-279 111-202 (229) 18 2oda_A Hypothetical protein ps 37.8 19 0.0008 15.5 2.9 78 198-281 38-123 (196) 19 1oih_A Putative alkylsulfatase 36.3 20 0.00085 15.3 3.1 53 286-355 201-256 (301) 20 3hv8_A Protein FIMX; EAL phosp 35.0 21 0.00089 15.2 4.8 83 200-282 154-242 (268) 21 1xne_A Hypothetical protein PF 33.7 22 0.00093 15.0 3.6 66 106-192 32-102 (113) 22 1kwm_A Procarboxypeptidase B; 33.4 18 0.00074 15.8 2.0 132 201-345 268-402 (402) 23 2i2w_A Phosphoheptose isomeras 33.1 23 0.00095 15.0 2.8 22 248-269 144-165 (212) 24 3iix_A Biotin synthetase, puta 32.3 23 0.00098 14.9 4.8 64 195-270 136-202 (348) 25 2boa_A Carboxypeptidase A4; me 32.1 23 0.00098 14.9 2.9 130 203-345 273-404 (404) 26 1r1m_A Outer membrane protein 31.3 23 0.00098 14.9 2.3 78 203-281 74-152 (164) 27 3icj_A Uncharacterized metal-d 31.1 19 0.00081 15.5 1.8 22 284-306 484-505 (534) 28 3pfm_A Ggdef domain protein; P 30.9 21 0.00088 15.2 2.0 81 202-282 139-226 (243) 29 1dtd_A Carboxypeptidase A2; ca 30.4 25 0.001 14.7 2.7 129 203-344 172-302 (303) 30 3kw0_A Cysteine peptidase; str 30.0 25 0.0011 14.6 2.3 24 41-64 28-51 (214) 31 2r5f_A Transcriptional regulat 29.9 25 0.0011 14.6 4.4 110 159-281 121-245 (264) 32 2h6r_A Triosephosphate isomera 29.8 21 0.00089 15.2 1.9 64 180-272 58-122 (219) 33 2bo9_A Carboxypeptidase A4; me 27.5 28 0.0012 14.3 2.8 131 202-345 176-308 (308) 34 1w0m_A TIM, triosephosphate is 27.3 28 0.0012 14.3 2.7 64 181-273 62-126 (226) 35 1tk9_A Phosphoheptose isomeras 26.2 29 0.0012 14.2 3.2 21 248-268 123-143 (188) 36 3gt2_A Putative uncharacterize 24.1 32 0.0013 13.9 2.3 15 51-65 88-102 (142) 37 2vvr_A Ribose-5-phosphate isom 24.1 32 0.0013 13.9 2.4 67 190-273 5-71 (149) 38 1jid_A Signal recognition part 23.5 33 0.0014 13.8 3.2 19 190-213 40-58 (128) 39 1pca_A Procarboxypeptidase A P 23.4 14 0.00058 16.5 0.0 114 204-329 274-391 (403) 40 3k7p_A Ribose 5-phosphate isom 23.0 33 0.0014 13.8 2.6 73 189-276 25-97 (179) 41 3ijp_A DHPR, dihydrodipicolina 22.8 24 0.001 14.7 1.2 184 136-354 88-284 (288) 42 3jyv_B 40S ribosomal protein S 22.6 34 0.0014 13.7 4.0 21 250-270 120-140 (193) 43 1omh_A TRWC protein; protein-D 22.6 34 0.0014 13.7 2.9 31 193-227 189-219 (293) 44 3ofo_B 30S ribosomal protein S 21.8 16 0.00068 16.0 0.1 22 250-271 160-181 (218) 45 2jyx_A Lipoprotein SPR; soluti 21.4 36 0.0015 13.5 1.8 14 52-65 67-80 (136) 46 3kzp_A LMO0111 protein, putati 21.3 30 0.0012 14.1 1.4 90 200-291 129-226 (235) 47 2wm8_A MDP-1, magnesium-depend 21.3 36 0.0015 13.5 3.0 91 200-304 72-170 (187) 48 1u02_A Trehalose-6-phosphate p 21.3 36 0.0015 13.5 2.7 10 263-272 172-181 (239) 49 1o1x_A Ribose-5-phosphate isom 20.7 27 0.0011 14.4 1.0 65 190-272 16-81 (155) 50 1x92_A APC5045, phosphoheptose 20.3 38 0.0016 13.4 3.2 21 248-268 126-146 (199) 51 1j5w_A Glycyl-tRNA synthetase 20.2 13 0.00057 16.6 -0.6 24 90-113 51-75 (298) 52 2ipc_A Preprotein translocase 20.2 35 0.0015 13.6 1.5 57 222-280 404-460 (997) No 1 >1vky_A S-adenosylmethionine:tRNA ribosyltransferase- isomerase; TM0574, structural genomics, JCSG, protein structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: e.53.1.1 Probab=100.00 E-value=0 Score=1022.95 Aligned_cols=335 Identities=42% Similarity=0.683 Sum_probs=317.8 Q ss_pred CCCCCCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCC Q ss_conf 98633588889778616998781203135663788875315310143478726988799994795688899876404677 Q gi|254780180|r 1 MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHIN 80 (360) Q Consensus 1 M~lsdfDy~LP~elIAq~P~~~Rd~SRLLV~~r~~~~~~~i~h~~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~ 80 (360) |+||||||+||+|||||+|+++||+|||||++++++ .|.|+.|+||++||+||||||||||||+||||+|+| T Consensus 13 Mklsdfdy~LP~elIAq~P~~~Rd~SRLLVl~~~~~---~i~h~~F~dl~~~L~~gDlLV~NdTkVipARL~g~k----- 84 (347) T 1vky_A 13 MKVSEFDYELPPELIAQEPVEPRDASRLMVLHRKTQ---RIEHRIFREIIEYLEPGDLLVLNVSKVIPARLYARK----- 84 (347) T ss_dssp ---CTTCCCCCGGGBCSSCCSSGGGSEEEEEETTTT---EEEEEEGGGGGGGCCTTCEEEEEEEECCSCEEEEBC----- T ss_pred EEHHHCCCCCCHHHHCCCCCCCCCCCEEEEEECCCC---CEEEEEHHHHHHHCCCCCEEEEECCEEEEEEEEEEE----- T ss_conf 588783989895996689999965144889988999---077756765686479998999979989887998774----- Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHCC Q ss_conf 77650589981124866101122115643698579970578874069999603557724999726786300025442035 Q gi|254780180|r 81 RREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQSRLEATVIDKWNTGEILLVFSISGIELERQISLVGTI 160 (360) Q Consensus 81 ~~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~~~~~~~l~~~vi~~~~~g~~~i~f~~~~~~~~~~L~~~G~i 160 (360) .+|++||++++++.+++.|.|++||+||+|+|+++.+.+ .+.++++++.+.+.+.+.|+.+ .+++|+++|+| T Consensus 85 ~tgg~vEill~~~~~~~~w~~likp~kk~k~g~~l~~~~-----~~~~~v~~~~~~~~~~~~~~~~---~~~~l~~~G~~ 156 (347) T 1vky_A 85 KTGASIEILLIERLEEGIWKCLVRPGQKVKKGTELVIDE-----DLSAVCLGRGEDGTRILKFQPQ---DDRLIFEKGRT 156 (347) T ss_dssp ---CCEEEEEEEEEETTEEEEEEESCTTCCTTCEEEEET-----TEEEEEEEECTTSCEEEEEESC---CHHHHHHHC-- T ss_pred CCCCEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEECC-----CCEEEEEEEECCCCEEEECCCC---HHHHHHHCCCC T ss_conf 379709999977528983999974076789998899605-----6348999971476078851774---26899977999 Q ss_pred CCCHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC Q ss_conf 78522212345652114331013456757400555688789999999997215530378731656657887410135667 Q gi|254780180|r 161 PLPPYIARKRPIDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIM 240 (360) Q Consensus 161 PLPPYI~r~r~~~~~D~~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~m 240 (360) ||||||+| + .|.+|||||||+++|||||||||||||++||++|++|||++++||||||+|||+||++|+|++|+| T Consensus 157 PLPPYI~r--~---~d~erYQTVyAk~~GSVAAPTAGLHFT~~ll~~L~~kGv~~~~vTLHVG~GTF~Pv~~e~i~~H~m 231 (347) T 1vky_A 157 PLPPYIKN--E---VPLERYQTVYAKEEGSVAAPTAGLHFTPELIEKLKKKGVQFAEVVLHVGIGTFRPVKVEEVEKHKM 231 (347) T ss_dssp ----------------------------------CGGGGCCHHHHHHHHHHTCEEEEEEEEC------------------ T ss_pred CCCCEEEC--C---CCHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCC T ss_conf 99961745--6---418878788714898553677878779999999998499267789986467546764443455788 Q ss_pred CCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCHHHH Q ss_conf 70007785999999998753798099962878998999985289846888722366574096114312552775545789 Q gi|254780180|r 241 HSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPKSTL 320 (360) Q Consensus 241 H~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~~~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~Stl 320 (360) |+|||+||++|+++||+||++|+|||||||||||||||++. +|.+++++|||||||+|||+|++||+||||||+||||| T Consensus 232 H~E~~~I~~~ta~~I~~ak~~g~RIiAVGTT~~RaLEs~~~-~~~~~~~~G~T~lfI~Pgy~fkvvD~LiTNFHlPkSTL 310 (347) T 1vky_A 232 HEEFYQVPKETVRKLRETRERGNRIVAVGTTTVRTLETIAR-LPEQEEYVGKTDLFIYPPFEFKLVDALVTNFHLPRSTL 310 (347) T ss_dssp CCCEEEECHHHHHHHHHHHHHTCCEEEESHHHHHHHHHHTT-SCCCSSEEECCCCCCCSSCCCSSCSEEEEECCCTTCHH T ss_pred CCEEEEECHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHH-HCCCCCCCCCCCEEECCCCCCCEECEEEECCCCCCCHH T ss_conf 65589937999999999997189489995418999999875-13677778861559789998728276343573783589 Q ss_pred HHHHHHHHCHHHHHHHHHHHHHCCCEEECCCCHHHCC Q ss_conf 9999987198999999999998698261101022233 Q gi|254780180|r 321 LMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLF 357 (360) Q Consensus 321 l~Lv~Af~G~~~~~~~Y~~Ai~~~yrF~syGDamLi~ 357 (360) |||||||+|+++++++|++||+++||||||||||||+ T Consensus 311 l~LvsAf~G~~~~~~aY~~Ai~~~YrF~SyGDamLil 347 (347) T 1vky_A 311 LMLVAAFAGKDFVMEAYREAVKRRYRFFSFGDAMLIL 347 (347) T ss_dssp HHHHHHHHCHHHHHHHHHHHHHTTCCBSTTSCEEEEC T ss_pred HHHHHHHCCHHHHHHHHHHHHHCCCCEECCCHHHEEC T ss_conf 9999985896999999999998799601502230109 No 2 >1yy3_A S-adenosylmethionine:tRNA ribosyltransferase- isomerase; beta-barrel, QUEA, quein queuosine, tRNA- modification; 2.88A {Bacillus subtilis} Probab=100.00 E-value=0 Score=1020.68 Aligned_cols=341 Identities=42% Similarity=0.722 Sum_probs=319.7 Q ss_pred CCCCCCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCC Q ss_conf 98633588889778616998781203135663788875315310143478726988799994795688899876404677 Q gi|254780180|r 1 MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHIN 80 (360) Q Consensus 1 M~lsdfDy~LP~elIAq~P~~~Rd~SRLLV~~r~~~~~~~i~h~~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~ 80 (360) |+||+|||+||+|||||+|+++||+|||||++++++ +|+|+.|+||++||+||||||||||||+||||+|.|. T Consensus 5 mkl~~fDy~LP~eLIAq~P~~~Rd~SRLLV~~r~~~---~i~h~~F~dl~~~L~~gDlLV~NnTkVipARL~g~k~---- 77 (346) T 1yy3_A 5 SKVDLFDFELPERLIAQVPLEQRDASRLMVLDKHTG---ELTDSSFKHIISFFNEGDCLVLNNTRVLPARLFGTKE---- 77 (346) T ss_dssp ---CCSCCCCCTTTBCSSCCTTSTTSBEEECCTTTC---CCCCCBTTGGGGGCCTTEEEEECCCCSCCEEEEEEES---- T ss_pred CCHHHCCCCCCHHHHCCCCCCCCCCCEEEEEECCCC---CEEEEEHHHHHHHCCCCCEEEEECCEEEEEEEEEEEC---- T ss_conf 734114889994897689999976352878988999---0677655126764799989999899988558985744---- Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHCC Q ss_conf 77650589981124866101122115643698579970578874069999603557724999726786300025442035 Q gi|254780180|r 81 RREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQSRLEATVIDKWNTGEILLVFSISGIELERQISLVGTI 160 (360) Q Consensus 81 ~~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~~~~~~~l~~~vi~~~~~g~~~i~f~~~~~~~~~~L~~~G~i 160 (360) .+|+++|+++++..+++.|.|++||+||+++|+++.|.+.. ..+.+.+..+.+.+.++|..++ ++.++|+++|+| T Consensus 78 ~~g~~veill~~~~~~~~w~al~kp~kk~~~g~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~G~~ 152 (346) T 1yy3_A 78 DTGAKVELLLLKQETGDKWETLAKPAKRVKKGTVVTFGDGR----LKAICTEELEHGGRKMEFQYDG-IFYEVLESLGEM 152 (346) T ss_dssp SSSCCEEEEEEEECSTTEEEEEETTGGGSCTTCEEEETTSS----SEEEEEEECTTSCEEEEEECSS-CHHHHHHHHHTC T ss_pred CCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCEEEECCCC----EEEEEEEEECCCCEEEEECCCC-CHHHHHHHCCCC T ss_conf 88866999861124687479985156666778689956983----7999999806883899962787-289999972899 Q ss_pred CCCHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC Q ss_conf 78522212345652114331013456757400555688789999999997215530378731656657887410135667 Q gi|254780180|r 161 PLPPYIARKRPIDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIM 240 (360) Q Consensus 161 PLPPYI~r~r~~~~~D~~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~m 240 (360) ||||||+|+ + .|.+|||||||+++|||||||||||||++||++|++|||++++||||||+|||+||++|+|++|+| T Consensus 153 PLPPYI~r~--~--~D~~rYQTVyA~~~GSvAAPTAGLHFt~~ll~~L~~kGv~i~~iTLHVG~GTF~Pv~~e~i~~h~m 228 (346) T 1yy3_A 153 PLPPYIKEQ--L--DDKERYQTVYSKEIGSAAAPTAGLHFTEEILQQLKDKGVQIEFITLHVGLGTFRPVSADEVEEHNM 228 (346) T ss_dssp CCCHHHHTT--S--SSCC------------CCCCSSTTCCCHHHHHHHHHHTEEEEECEEESGGGGGC-----------C T ss_pred CCCCCCCCC--C--CHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCC T ss_conf 999550356--0--219999999721689702887888789999999998698599999961477657766554445788 Q ss_pred CCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHC-CCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCHHH Q ss_conf 700077859999999987537980999628789989999852-8984688872236657409611431255277554578 Q gi|254780180|r 241 HSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTE-DGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPKST 319 (360) Q Consensus 241 H~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~~-~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~St 319 (360) |+|||+||++|+++||+||++|||||||||||||||||++.. +|.+++++|||||||+|||+|++||+||||||+|||| T Consensus 229 H~E~~~i~~~t~~~I~~ak~~g~rIiAVGTT~~RaLEs~~~~~~g~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~St 308 (346) T 1yy3_A 229 HAEFYQMSEETAAALNKVRENGGRIISVGTTSTRTLETIAGEHDGQFKASSGWTSIFIYPGYEFKAIDGMITNFHLPKSS 308 (346) T ss_dssp CCEEEEECHHHHHHHHHHHHTTCCEEEECTTTHHHHHHHHHTTTSCCCCEEEEECCCCCTTCCCSSCSEEEEECCCTTSS T ss_pred CCEEEEECHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCEECCCEECCCCCCCH T ss_conf 76689824999999999997599099994516888898875049960688864281877999788828666357278458 Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHCCCEEECCCCHHHCC Q ss_conf 99999987198999999999998698261101022233 Q gi|254780180|r 320 LLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLF 357 (360) Q Consensus 320 ll~Lv~Af~G~~~~~~~Y~~Ai~~~yrF~syGDamLi~ 357 (360) ||||||||+|+++|+++|++||+++||||||||||||+ T Consensus 309 ll~Lv~Af~g~~~~~~~Y~~Ai~~~yrf~syGDamlil 346 (346) T 1yy3_A 309 LIMLVSALAGRENILRAYNHAVEEEYRFFSFGDAMLII 346 (346) T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHTTCCBSSSSCEEEC- T ss_pred HHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHEEC T ss_conf 99999995897999999999998798501502432009 No 3 >1wdi_A Hypothetical protein TT0907; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: CIT; 2.10A {Thermus thermophilus} SCOP: e.53.1.1 Probab=100.00 E-value=0 Score=1021.10 Aligned_cols=341 Identities=44% Similarity=0.676 Sum_probs=319.1 Q ss_pred CCCCCCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCC Q ss_conf 98633588889778616998781203135663788875315310143478726988799994795688899876404677 Q gi|254780180|r 1 MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHIN 80 (360) Q Consensus 1 M~lsdfDy~LP~elIAq~P~~~Rd~SRLLV~~r~~~~~~~i~h~~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~ 80 (360) |.||||||+||++||||+|+++||+|||||++++++. +|+|+.|+||++||+||||||||||||+||||+|+| T Consensus 2 ~~L~~fdy~LP~elIAq~P~~~Rd~sRLLV~~r~~~~--~i~h~~F~dl~~~L~~gDlLV~NdTkVipARL~g~k----- 74 (345) T 1wdi_A 2 EGLEAYDYHLPPEQIAQEGVEPRDMARLMVVYREGPF--RVAHKRVRDLPEFLRPGDVLVFNESKVIPARLLARK----- 74 (345) T ss_dssp CGGGGGCCCCCGGGBCSSCCSSGGGSEEEEECSSSSC--CEEEEEGGGHHHHCCTTCEEEEEEEEECCEEEEEEC----- T ss_pred CCHHHCCCCCCHHHHCCCCCCCCCCCEEEEEECCCCC--EEEECCHHHHHHHCCCCCEEEEECCEEEEEEEEEEC----- T ss_conf 9655669998948966899999621238999889998--575331634675479998999989989788999771----- Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCCCCCC---CEEEEEEECCCCCCEEEEECCCCCCHHHHHHHH Q ss_conf 77650589981124866101122115643698579970578874---069999603557724999726786300025442 Q gi|254780180|r 81 RREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQS---RLEATVIDKWNTGEILLVFSISGIELERQISLV 157 (360) Q Consensus 81 ~~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~~~~~~---~l~~~vi~~~~~g~~~i~f~~~~~~~~~~L~~~ 157 (360) .+|++||+++++..+++.|.|++||+||+++|+++.+.+..... .+.+++++..+.+.++++|+. ++.++|+++ T Consensus 75 ~tgg~vEilll~~~~~~~w~al~k~~kk~k~G~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~l~~~ 151 (345) T 1wdi_A 75 PTGGKVEILLVRERSPGLWEALLGPARKAPPGTRLLLLSPKDLAPVPGLQAEVVAVEEDGVRLLRFQG---DLVAHLEEV 151 (345) T ss_dssp TTSCEEEEEECBCC------CCBCCCSCCCSCEEEEECTTTTSCEEEEEEEECCCSSCC-------------CCEEESCC T ss_pred CCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCEEEECCCCCCEECCCCEEEEEEEECCCCEEEEEHH---HHHHHHHHC T ss_conf 78970799986325787304530355678989889954874200005726999998068727986103---689999975 Q ss_pred HCCCCCHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC Q ss_conf 03578522212345652114331013456757400555688789999999997215530378731656657887410135 Q gi|254780180|r 158 GTIPLPPYIARKRPIDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDD 237 (360) Q Consensus 158 G~iPLPPYI~r~r~~~~~D~~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~ 237 (360) |+|||||||+|+ .|.+|||||||+++|||||||||||||++||++|++|||++++||||||+|||+||+ +++.+ T Consensus 152 G~~PLPPYI~r~-----~d~~rYQTVyAk~~GSVAAPTAGLHFt~~ll~~l~~kgi~~~~iTLHVG~GTF~PV~-~~i~~ 225 (345) T 1wdi_A 152 GEVPLPPYIKAK-----IPMERYQTVYARRPGSVAAPTAGLHFTPELLERLREMGVELRFLTLHVGPGTFRPVK-GDPEK 225 (345) T ss_dssp CSCC------------------------------CCCCGGGGCCHHHHHHHHHTTCEEEEEEEEESGGGCCC-------- T ss_pred CCCCCCHHHHCC-----CHHHHHHHHHCCCCCCEECCCCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCCCCCC-CCCCC T ss_conf 998888677223-----257663246406898550676878779999999998698089999963677504544-54346 Q ss_pred CCCCCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCH Q ss_conf 66770007785999999998753798099962878998999985289846888722366574096114312552775545 Q gi|254780180|r 238 HIMHSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPK 317 (360) Q Consensus 238 h~mH~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~~~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~ 317 (360) |+||+|||+||++|+++||+||++|+|||||||||||||||++..+|.+++++|||||||+|||+|++||+||||||+|| T Consensus 226 H~mH~E~~~I~~~t~~~I~~ak~~g~rIiAVGTT~~RaLEs~~~~~~~~~~~~g~T~lfI~Pgy~f~vvd~LlTNFHlPk 305 (345) T 1wdi_A 226 HEMHAEPYAIPEEVAEAVNRAKAEGRRVVAVGTTVVRALESAYREGVGVVAGEGETRLFIRPPYTFKVVDALFTNFHLPR 305 (345) T ss_dssp --CCCEEEEECHHHHHHHHHHHHTTCCEEEESHHHHHHHHHTEETTTEECCEEEEECCCCCSSCCCSSCSEEEEECCCTT T ss_pred CCCCCEEEEECHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCEECEEECCCCCCCEECEEEECCCCCC T ss_conf 78765389966999999999997499299992408999999996189604678605859639898758176344573784 Q ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHCCCEEECCCCHHHCC Q ss_conf 7899999987198999999999998698261101022233 Q gi|254780180|r 318 STLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLF 357 (360) Q Consensus 318 Stll~Lv~Af~G~~~~~~~Y~~Ai~~~yrF~syGDamLi~ 357 (360) ||||||||||+|+++|+++|++||+++||||||||||||+ T Consensus 306 STLl~LvsAf~G~~~~~~~Y~~Ai~~~YrF~SyGDamlil 345 (345) T 1wdi_A 306 STLLMLVAAFLGRERTLEAYRLAVAEGYRFYSLGDAMLIL 345 (345) T ss_dssp CHHHHHHHHHHCHHHHHHHHHHHHHTTCCBSTTSCEEEEC T ss_pred CHHHHHHHHHCCHHHHHHHHHHHHHCCCCEECCCHHHEEC T ss_conf 5899999995898999999999998698344412431109 No 4 >3o2g_A Gamma-butyrobetaine dioxygenase; gamma-butyrobetaine hydroxylase, 2-OXOG dioxygenase 1, oxidoreductase, structural genomics; HET: OGA NM2; 1.78A {Homo sapiens} PDB: 3ms5_A* 3n6w_A Probab=84.81 E-value=0.62 Score=26.21 Aligned_cols=21 Identities=14% Similarity=0.143 Sum_probs=14.8 Q ss_pred HHHCCCEEEEECHHHHHHHHH Q ss_conf 753798099962878998999 Q gi|254780180|r 258 VKSRGGRIVSVGTTSLRLLET 278 (360) Q Consensus 258 ak~~g~rIiAVGTT~~R~LEs 278 (360) +...|.-+++=|-.+...|.. T Consensus 224 ~~~GGet~fvD~~~a~~~L~~ 244 (388) T 3o2g_A 224 TVTGGDSEIVDGFNVCQKLKK 244 (388) T ss_dssp CSSSCCEEEEEHHHHHHHHHH T ss_pred CCCCCCCEEECHHHHHHHHHH T ss_conf 478998462637888654445 No 5 >2wbq_A L-arginine beta-hydroxylase; oxidoreductase, non-heme Fe(II) hydroxylase, cbeta- hydroxylation, L-arginine oxygenase, NRPS, viomycin; HET: ZZU; 1.10A {Streptomyces vinaceus} PDB: 2wbp_A* 2wbo_A* Probab=83.56 E-value=0.75 Score=25.59 Aligned_cols=14 Identities=14% Similarity=0.024 Sum_probs=7.6 Q ss_pred CCCCCHHHHHHHHH Q ss_conf 88789999999997 Q gi|254780180|r 197 GLHFTSNLLSRLIS 210 (360) Q Consensus 197 GLHFt~~ll~~L~~ 210 (360) --++++++..+|.+ T Consensus 201 ~~~l~~~~~~~L~~ 214 (358) T 2wbq_A 201 LDDLDERTLDVLFQ 214 (358) T ss_dssp TTTCCHHHHHHHTS T ss_pred HHHCCHHHHHHHHC T ss_conf 45479999998746 No 6 >2og5_A Putative oxygenase; non-ribosomal peptide synthesis, iron(II)/alpha- ketoglutarate dependent hydroxylase, jelly-roll fold; 1.45A {Streptomyces coelicolor} PDB: 2og6_A 2og7_A* Probab=82.58 E-value=0.87 Score=25.15 Aligned_cols=11 Identities=9% Similarity=0.226 Sum_probs=5.4 Q ss_pred CCCCHHHCCCC Q ss_conf 10102223367 Q gi|254780180|r 349 SYGDTSLLFQK 359 (360) Q Consensus 349 syGDamLi~~~ 359 (360) .=||.+++.+. T Consensus 297 ~pGDllivDN~ 307 (357) T 2og5_A 297 LPGELAIVDNR 307 (357) T ss_dssp CTTCEEEEETT T ss_pred CCCCEEEEECC T ss_conf 79978999478 No 7 >1nx8_A CARC, carbapenem synthase; jelly roll, unknown function; HET: AKG N7P; 2.30A {Pectobacterium carotovorum} SCOP: b.82.2.8 PDB: 1nx4_A* Probab=77.47 E-value=1.6 Score=23.22 Aligned_cols=26 Identities=12% Similarity=0.213 Sum_probs=9.8 Q ss_pred HHHHHHHHHHCCCEE---ECCCCHHHCCC Q ss_conf 999999999869826---11010222336 Q gi|254780180|r 333 TKKMYQHAISHAYRF---YSYGDTSLLFQ 358 (360) Q Consensus 333 ~~~~Y~~Ai~~~yrF---~syGDamLi~~ 358 (360) +..+++++.+.+|.+ ..=||.+++-+ T Consensus 218 ~~~l~~~~~~~~~~~~~~w~~GDlli~DN 246 (273) T 1nx8_A 218 FQELGAFLKQPRYYYKHFWEDGDLLIMDN 246 (273) T ss_dssp HHHHHHHHTSTTTEEEECCCTTCEEEEET T ss_pred HHHHHHHHCCCCEEEEEEECCCCEEEEEC T ss_conf 99999997497749998855996999926 No 8 >3eat_X Pyoverdine biosynthesis protein PVCB; paerucumarin, Fe/alpha-ketoglutarate dependent hydroxylase, 2-isocyano-6,7-dihydroxycoumarin; 2.50A {Pseudomonas aeruginosa} Probab=76.38 E-value=1.8 Score=22.87 Aligned_cols=29 Identities=7% Similarity=-0.049 Sum_probs=12.8 Q ss_pred HHHHHHHHHHHHCCCE--E-ECCCCHHHCCCC Q ss_conf 9999999999986982--6-110102223367 Q gi|254780180|r 331 EETKKMYQHAISHAYR--F-YSYGDTSLLFQK 359 (360) Q Consensus 331 ~~~~~~Y~~Ai~~~yr--F-~syGDamLi~~~ 359 (360) +.+..+++++.+.+|. | ..=||..++-+. T Consensus 226 ~~l~~l~~~~~~~~~~~~~~w~~GDlli~DN~ 257 (293) T 3eat_X 226 ELLASLRRCLYHPQAHYAHRWRSDDLVIADNL 257 (293) T ss_dssp HHHHHHHHHHTSTTTEEEECCCTTCEEEEETT T ss_pred HHHHHHHHHHCCCCEEEEEEECCCCEEEEEHH T ss_conf 99999999973957299998069968999214 No 9 >2q4a_A Clavaminate synthase-like protein AT3G21360; ensemble refinement, refinement methodology development, structural genomics; 2.39A {Arabidopsis thaliana} SCOP: b.82.2.8 PDB: 1y0z_A Probab=61.39 E-value=5.8 Score=19.19 Aligned_cols=18 Identities=17% Similarity=0.067 Sum_probs=9.3 Q ss_pred HCCCEEE-CCCCHHHCCCC Q ss_conf 8698261-10102223367 Q gi|254780180|r 342 SHAYRFY-SYGDTSLLFQK 359 (360) Q Consensus 342 ~~~yrF~-syGDamLi~~~ 359 (360) +.-|+|- .=||.+++-+. T Consensus 291 ~~~~~~~Wq~GDivi~DN~ 309 (330) T 2q4a_A 291 EECVAVPWQRGDVLLIDNW 309 (330) T ss_dssp HHCBCCCCCTTCEEEEETT T ss_pred CEEEEEECCCCCEEEEECH T ss_conf 1699815689999999111 No 10 >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* Probab=50.31 E-value=4.9 Score=19.72 Aligned_cols=29 Identities=31% Similarity=0.455 Sum_probs=15.8 Q ss_pred CCCCCCCCCH-----HHHHHHHHHCCCCEEEEEE Q ss_conf 5556887899-----9999999721553037873 Q gi|254780180|r 193 APTAGLHFTS-----NLLSRLISIGIKVYFVTLH 221 (360) Q Consensus 193 APTAGLHFt~-----~ll~~L~~kGi~~~~iTLH 221 (360) =||+|||-.. ++|.+|+++|..+..|+.+ T Consensus 407 EPT~~Ldp~~~~~l~~~l~~L~~~G~TvivveHd 440 (842) T 2vf7_A 407 EPSAGLHPADTEALLSALENLKRGGNSLFVVEHD 440 (842) T ss_dssp CTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCC T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC T ss_conf 8412489899999999999997459748999578 No 11 >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, ATP-binding cassette, cytoplasm; HET: ADP; 3.20A {Geobacillus stearothermophilus 10} Probab=49.78 E-value=5.1 Score=19.63 Aligned_cols=32 Identities=22% Similarity=0.349 Sum_probs=24.1 Q ss_pred CCCCCCCCCCH-----HHHHHHHHHCCCCEEEEEECC Q ss_conf 05556887899-----999999972155303787316 Q gi|254780180|r 192 AAPTAGLHFTS-----NLLSRLISIGIKVYFVTLHVG 223 (360) Q Consensus 192 AAPTAGLHFt~-----~ll~~L~~kGi~~~~iTLHVG 223 (360) -=||||||=+. ++|.+|+++|..+..|+.+.+ T Consensus 531 DEPTs~Ld~~~~~~ll~lLk~Lk~~GnTIIvVeHdl~ 567 (972) T 2r6f_A 531 DEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED 567 (972) T ss_dssp ECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHH T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH T ss_conf 7831459989999999999999976987999927789 No 12 >1aye_A PCPA2, procarboxypeptidase A2; serine protease, zymogen, hydrolase; 1.80A {Homo sapiens} SCOP: c.56.5.1 d.58.3.1 PDB: 1o6x_A Probab=47.49 E-value=11 Score=17.14 Aligned_cols=130 Identities=22% Similarity=0.280 Sum_probs=69.5 Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCCC-CCCCCCCCCCCCCCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHH Q ss_conf 99999997215530378731656657-88741013566770007785999999998753798099962878998999985 Q gi|254780180|r 203 NLLSRLISIGIKVYFVTLHVGAGTFM-PVKVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATT 281 (360) Q Consensus 203 ~ll~~L~~kGi~~~~iTLHVG~GTF~-Pi~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~ 281 (360) .+.+-++..+--..+|++|-+.+-+. |=-. .-..-.-+.|...+....+++|.+.... ...+|+.+ +..+. T Consensus 270 av~~~~~~~~~i~~~i~~HS~g~~ilyP~g~-~~~~~~~~~~~~~~~~~~a~ai~~~~g~---~Y~~g~~~----~~lY~ 341 (401) T 1aye_A 270 SIVDFIKSHGKVKAFIILHSYSQLLMFPYGY-KCTKLDDFDELSEVAQKAAQSLRSLHGT---KYKVGPIC----SVIYQ 341 (401) T ss_dssp HHHHHHHHHCCEEEEEEEEESSCEEEESCSS-SCSCCTTHHHHHHHHHHHHHHHHHHHCC---CCEEEEHH----HHTCC T ss_pred HHHHHHHHCCCCEEEEECCCCCCEEEECCCC-CCCCCCCHHHHHHHHHHHHHHHHHHCCC---CCCCCCCC----CCCCC T ss_conf 9999998437604999726898568837888-8889998799999999999999985499---87458865----70521 Q ss_pred CCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCHHHHHHHH-HHHHCHHHHHHHHHHHHHCCC Q ss_conf 2898468887223665740961143125527755457899999-987198999999999998698 Q gi|254780180|r 282 EDGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPKSTLLMLV-SAFCGIEETKKMYQHAISHAY 345 (360) Q Consensus 282 ~~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~Stll~Lv-~Af~G~~~~~~~Y~~Ai~~~y 345 (360) ..|....|.- +..|.+.|.+.+-|.=-..|++|.+-..-.. ..|+| ++..-+++.++.| T Consensus 342 ~~G~s~Dw~y--~~~~~~s~t~EL~d~g~~gF~lP~~~I~p~~~E~~~~---~~~~~~~i~~~~y 401 (401) T 1aye_A 342 ASGGSIDWSY--DYGIKYSFAFELRDTGRYGFLLPARQILPTAEETWLG---LKAIMEHVRDHPY 401 (401) T ss_dssp CSSCHHHHHH--HTTCSEEEEEEESCSSSSTTSCCGGGHHHHHHHHHHH---HHHHHHHHHHSCC T ss_pred CCCHHHHHHC--CCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHCCC T ss_conf 6755997754--4698299999967898899879999999999999999---9999999986699 No 13 >1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1 Probab=46.91 E-value=14 Score=16.44 Aligned_cols=76 Identities=16% Similarity=0.100 Sum_probs=42.2 Q ss_pred CHHHHHHHHHHCCCCEEEEEECCCCCCCC-CCCCCCCC----CCCCCHHEEECHHHHHHHHH-------HHHCCCEEEEE Q ss_conf 99999999972155303787316566578-87410135----66770007785999999998-------75379809996 Q gi|254780180|r 201 TSNLLSRLISIGIKVYFVTLHVGAGTFMP-VKVEDTDD----HIMHSEIGFIDAPTAQALNS-------VKSRGGRIVSV 268 (360) Q Consensus 201 t~~ll~~L~~kGi~~~~iTLHVG~GTF~P-i~~~~i~~----h~mH~E~~~i~~~~~~~I~~-------ak~~g~rIiAV 268 (360) .+.|-+.|+++|+++..+.+-- |-.+ ...+.+.+ .....=-.+-|..+++...+ ....+-+++|+ T Consensus 169 ~~~L~~~L~~~G~~v~~~~vY~---t~~~~~~~~~~~~~l~~~~~~d~VvFtSps~v~~f~~~l~~~~~~~~~~~~i~aI 245 (286) T 1jr2_A 169 REILPKALKDKGIAMESITVYQ---TVAHPGIQGNLNSYYSQQGVPASITFFSPSGLTYSLKHIQELSGDNIDQIKFAAI 245 (286) T ss_dssp GCCHHHHHHTTTCCEEEEECEE---EEECTTHHHHHHHHHHHHCSCSEEEESSHHHHHHHHHHHHHHHGGGGGGSEEEES T ss_pred HHHHHHHHHHCCCEEEEEEEEE---EECCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEE T ss_conf 0789999984798556998872---2148742188999987326872999939899999999998730324368189998 Q ss_pred CHHHHHHHHHH Q ss_conf 28789989999 Q gi|254780180|r 269 GTTSLRLLETA 279 (360) Q Consensus 269 GTT~~R~LEs~ 279 (360) |-++..+|+.. T Consensus 246 G~~Ta~~l~~~ 256 (286) T 1jr2_A 246 GPTTARALAAQ 256 (286) T ss_dssp SHHHHHHHHHT T ss_pred CHHHHHHHHHC T ss_conf 99999999986 No 14 >1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Staphylococcus aureus subsp} SCOP: c.108.1.13 Probab=46.29 E-value=10 Score=17.47 Aligned_cols=28 Identities=21% Similarity=0.364 Sum_probs=21.9 Q ss_pred HHHHHHHHHHCCCCEEEE----------E-ECCCCCCCC Q ss_conf 999999997215530378----------7-316566578 Q gi|254780180|r 202 SNLLSRLISIGIKVYFVT----------L-HVGAGTFMP 229 (360) Q Consensus 202 ~~ll~~L~~kGi~~~~iT----------L-HVG~GTF~P 229 (360) .++|+.|+++|+.++-+| | +.|+..|-+ T Consensus 221 ~elL~~Lk~~GiklaIvTg~~~~~a~~~L~~lgL~~~Fd 259 (384) T 1qyi_A 221 KVLLNDLKGAGFELGIATGRPYTETVVPFENLGLLPYFE 259 (384) T ss_dssp HHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCGGGSC T ss_pred HHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCHHHCC T ss_conf 999999998799899988984899999999849854488 No 15 >3cvj_A Putative phosphoheptose isomerase; NP_244191.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125} Probab=46.13 E-value=14 Score=16.36 Aligned_cols=96 Identities=6% Similarity=0.123 Sum_probs=55.9 Q ss_pred ECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCC---CHHHHHHH Q ss_conf 859999999987537980999628789989999852898468887223665740961143125527755---45789999 Q gi|254780180|r 247 IDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPGYRFRAVDILMSNFHL---PKSTLLML 323 (360) Q Consensus 247 i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~~~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~---P~Stll~L 323 (360) -+++.+++++.||++|-++|||-.. .-=+.+...+..-+...-..|+.|.-+-+..-.---+.+++. |-||...+ T Consensus 120 ~t~~vi~a~~~AK~~G~~vIaIT~~--~~S~~~~~~h~~g~~L~~~ad~~id~~~~~gda~~~~~~~~~~~~~tst~~~~ 197 (243) T 3cvj_A 120 RNTVPVEMAIESRNIGAKVIAMTSM--KHSQKVTSRHKSGKKLYEYADVVLDNGAPVGDAGFQIANSEIYSGATSDSIGC 197 (243) T ss_dssp CSHHHHHHHHHHHHHTCEEEEEECH--HHHHHSCCCSTTSCCGGGGCSEEEECCCCTTSCCEECSSSSCEECCCHHHHHH T ss_pred CCHHHHHHHHHHHHCCCEEEEEECC--CCCCCCCCCCCCCCCHHHHCCCEEECCCCCCCCEEECCCCCCCCCCHHHHHHH T ss_conf 9999999999999879949998088--76755432344446256736766766777654301114677676758899999 Q ss_pred HHHHHCHHHHHHHHHHHHHCCCEE Q ss_conf 998719899999999999869826 Q gi|254780180|r 324 VSAFCGIEETKKMYQHAISHAYRF 347 (360) Q Consensus 324 v~Af~G~~~~~~~Y~~Ai~~~yrF 347 (360) ++....+.++.+.-.+++... T Consensus 198 ---~i~~~~~~~~~~~l~~~g~~~ 218 (243) T 3cvj_A 198 ---FLAQALIVETLHLLVQQGFEP 218 (243) T ss_dssp ---HHHHHHHHHHHHHHHHTTCCC T ss_pred ---HHHHHHHHHHHHHHHHCCCCC T ss_conf ---999999999999999769997 No 16 >1otj_A Alpha-ketoglutarate-dependent taurine dioxygenase; jelly roll motif, alpha ketoglutarate-dependent dioxygenase, oxidoreductase; 1.90A {Escherichia coli} SCOP: b.82.2.5 PDB: 1gqw_A* 1os7_A* 1gy9_A Probab=46.02 E-value=14 Score=16.43 Aligned_cols=47 Identities=13% Similarity=0.159 Sum_probs=27.5 Q ss_pred CCCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECCCEEE Q ss_conf 998781203135663788875315310143478726988799994795688 Q gi|254780180|r 18 RPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVIT 68 (360) Q Consensus 18 ~P~~~Rd~SRLLV~~r~~~~~~~i~h~~F~dl~~~L~~gDLLV~NnTKVip 68 (360) .|+.+.=.+...=+|-+. .+++..+.+|-+.|...-+|||.|-..=| T Consensus 8 ~pl~~~~Ga~I~gidl~~----~ls~~~~~~i~~~l~~~gvlvfr~q~lt~ 54 (283) T 1otj_A 8 TPLGPYIGAQISGADLTR----PLSDNQFEQLYHAVLRHQVVFLRDQAITP 54 (283) T ss_dssp EESSSSSCEEEESCCSSS----CCCHHHHHHHHHHHHHHSEEEECSCCCCH T ss_pred EECCCCEEEEEECCCCCC----CCCHHHHHHHHHHHHHCCEEEECCCCCCH T ss_conf 978897489997965698----69999999999999878999989999999 No 17 >3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori} Probab=38.84 E-value=18 Score=15.59 Aligned_cols=86 Identities=19% Similarity=0.129 Sum_probs=51.6 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCC-CCCCC---CCCCCCCCHHEEECHHHHHHHHHH--HHCC Q ss_conf 74005556887899999999972155303787316566578-87410---135667700077859999999987--5379 Q gi|254780180|r 189 GSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMP-VKVED---TDDHIMHSEIGFIDAPTAQALNSV--KSRG 262 (360) Q Consensus 189 GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~P-i~~~~---i~~h~mH~E~~~i~~~~~~~I~~a--k~~g 262 (360) ..+.-|.+. +=.+.+-+.|+++|+++..+.+-- |-.+ ...+. +.+... .--.+-|..+++...+. ...+ T Consensus 111 ~~il~~~g~-~~~~~l~~~L~~~g~~v~~~~~Y~---~~~~~~~~~~~~~l~~~~~-~~I~f~S~ssv~~f~~~~~~~~~ 185 (229) T 3p9z_A 111 KSVLYLRAK-EIVSSLDTILLEHGIDFKQAVVYE---NKLKHLTLSEQNALKPKEK-SILIFTAISHAKAFLHYFEFLEN 185 (229) T ss_dssp CEEEEEEES-SCSSCHHHHHHHTTCEEEEEEEEE---EEECCCCHHHHHHHSCCTT-CEEEECSHHHHHHHHHHSCCCTT T ss_pred CEEEEECCC-CCCHHHHHHHHHCCCCCCEEEEEE---ECCCCCCHHHHHHHHCCCC-CEEEECCHHHHHHHHHHHHCCCC T ss_conf 769997476-550789999986699713577877---3288779899999855899-88995499999999997303379 Q ss_pred CEEEEECHHHHHHHHHH Q ss_conf 80999628789989999 Q gi|254780180|r 263 GRIVSVGTTSLRLLETA 279 (360) Q Consensus 263 ~rIiAVGTT~~R~LEs~ 279 (360) .+++|+|-++..+|+.. T Consensus 186 ~~vi~IG~~ta~~l~~~ 202 (229) T 3p9z_A 186 YTAISIGNTTALYLQEQ 202 (229) T ss_dssp CEEEESSHHHHHHHHHT T ss_pred CEEEEECHHHHHHHHHC T ss_conf 79999999999999976 No 18 >2oda_A Hypothetical protein pspto_2114; haloacid dehalogenase, phosphonoacetaldehyde hydrolase, protein binding; HET: EPE; 1.90A {Pseudomonas syringae PV} Probab=37.82 E-value=19 Score=15.49 Aligned_cols=78 Identities=17% Similarity=0.074 Sum_probs=39.9 Q ss_pred CCCCHHHHHHHHHHCCCCEEEEEE------CCCCCC--CCCCCCCCCCCCCCCHHEEECHHHHHHHHHHHHCCCEEEEEC Q ss_conf 878999999999721553037873------165665--788741013566770007785999999998753798099962 Q gi|254780180|r 198 LHFTSNLLSRLISIGIKVYFVTLH------VGAGTF--MPVKVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGRIVSVG 269 (360) Q Consensus 198 LHFt~~ll~~L~~kGi~~~~iTLH------VG~GTF--~Pi~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~~g~rIiAVG 269 (360) ..-..++|+.|+++|+.++-+|=- .++..| .-|..++....|-|.+-| ..+++.++- .....++-|| T Consensus 38 ~PGa~e~L~~Lk~~G~~~ai~Tn~~~~~~~~~l~~l~d~vv~~~d~~~~KP~P~~~---~~a~~~lg~--~~~~~~v~Vg 112 (196) T 2oda_A 38 TPGAQNALKALRDQGMPCAWIDELPEALSTPLAAPVNDWMIAAPRPTAGWPQPDAC---WMALMALNV--SQLEGCVLIS 112 (196) T ss_dssp CTTHHHHHHHHHHHTCCEEEECCSCHHHHHHHHTTTTTTCEECCCCSSCTTSTHHH---HHHHHHTTC--SCSTTCEEEE T ss_pred CCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCHHH---HHHHHHHCC--CCCCEEEEEE T ss_conf 76699999999975984899548719999751104799999777467889984799---999999579--9604289894 Q ss_pred HHHHHHHHHHHH Q ss_conf 878998999985 Q gi|254780180|r 270 TTSLRLLETATT 281 (360) Q Consensus 270 TT~~R~LEs~~~ 281 (360) -|. .-++.+.+ T Consensus 113 D~~-~Di~aA~~ 123 (196) T 2oda_A 113 GDP-RLLQSGLN 123 (196) T ss_dssp SCH-HHHHHHHH T ss_pred CCH-HHHHHHHH T ss_conf 988-89999997 No 19 >1oih_A Putative alkylsulfatase ATSK; non-heme Fe(II) alphaketoglutarate dependent dioxygenase, jelly roll, oxidoreductase; 1.89A {Pseudomonas putida} SCOP: b.82.2.5 PDB: 1oii_A* 1oij_B* 1vz4_A 1vz5_A 1oik_A* 1oij_A* 1oij_C* Probab=36.33 E-value=20 Score=15.33 Aligned_cols=53 Identities=15% Similarity=0.274 Sum_probs=25.2 Q ss_pred CCCCCCCCCEEECCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCCEEE---CCCCHHH Q ss_conf 468887223665740961143125527755457899999987198999999999998698261---1010222 Q gi|254780180|r 286 INPWSGFTNIFITPGYRFRAVDILMSNFHLPKSTLLMLVSAFCGIEETKKMYQHAISHAYRFY---SYGDTSL 355 (360) Q Consensus 286 ~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~Stll~Lv~Af~G~~~~~~~Y~~Ai~~~yrF~---syGDamL 355 (360) ..+..|.-.||+.+ + ...+. +.-.+.| ++.+..+++++.+.+|.+- .=||.++ T Consensus 201 ~hp~tg~k~Ly~~~-~-~~~i~----~~~~~e~-----------~~ll~~L~~~~~~~~~~y~h~W~~GDlvi 256 (301) T 1oih_A 201 VHPISGERALQLGH-F-VKRIK----GYSLADS-----------QHLFAVLQGHVTRLENTVRWRWEAGDVAI 256 (301) T ss_dssp ECTTTCCEEECCST-T-EEEET----TSCHHHH-----------HHHHHHHHHHHTSGGGEEEECCCTTCEEE T ss_pred ECCCCCCEEEEECC-C-EEEEC----CCCHHHH-----------HHHHHHHHHHHCCCCEEEEEEEECCCEEE T ss_conf 26897641676246-2-13423----8885899-----------99999999986787749999950899899 No 20 >3hv8_A Protein FIMX; EAL phosphodiesterase, biofilm, C-DI-GMP, hydrolase; HET: C2E; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 3hv9_A Probab=34.99 E-value=21 Score=15.18 Aligned_cols=83 Identities=8% Similarity=-0.030 Sum_probs=52.1 Q ss_pred CCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHE------EECHHHHHHHHHHHHCCCEEEEECHHHH Q ss_conf 8999999999721553037873165665788741013566770007------7859999999987537980999628789 Q gi|254780180|r 200 FTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIG------FIDAPTAQALNSVKSRGGRIVSVGTTSL 273 (360) Q Consensus 200 Ft~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~------~i~~~~~~~I~~ak~~g~rIiAVGTT~~ 273 (360) -..+.+++|++.|+.++-=-.-.|...|..++.=.++--|++..+. ....-....|..++..|..|||-|=-+. T Consensus 154 ~~~~~i~~L~~~G~~ialddfg~~~~~l~~L~~l~~d~VKid~~~~~~i~~~~~~~~l~~li~~~~~~~~~vIaegVE~~ 233 (268) T 3hv8_A 154 QAKQLTQGLATLHCQAAISQFGCSLNPFNALKHLTVQFIKIDGSFVQDLNQVENQEILKGLIAELHEQQKLSIVPFVESA 233 (268) T ss_dssp HHHHHHHHHHHTTCEEEEEEETCSSSTTGGGGTCCCSEEEECGGGGSSTTSHHHHHHHHHHHHHHHHTTCEEEECCCCSH T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHEEEEEEEEECHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCH T ss_conf 99998877630786266504899864323311255057878489985166433668999999999984997899947949 Q ss_pred HHHHHHHHC Q ss_conf 989999852 Q gi|254780180|r 274 RLLETATTE 282 (360) Q Consensus 274 R~LEs~~~~ 282 (360) ..++.+..- T Consensus 234 ~~~~~l~~l 242 (268) T 3hv8_A 234 SVLATLWQA 242 (268) T ss_dssp HHHHHHHHH T ss_pred HHHHHHHHC T ss_conf 999999976 No 21 >1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, PSI, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus dsm 3638} SCOP: b.122.1.6 Probab=33.67 E-value=22 Score=15.04 Aligned_cols=66 Identities=21% Similarity=0.275 Sum_probs=35.0 Q ss_pred CCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHCC-CCCHHHCCCCCCCCCCHHHHCCCC Q ss_conf 5643698579970578874069999603557724999726786300025442035-785222123456521143310134 Q gi|254780180|r 106 SKVIKKGDILHFFSQDGQSRLEATVIDKWNTGEILLVFSISGIELERQISLVGTI-PLPPYIARKRPIDARDYVDYQTTY 184 (360) Q Consensus 106 ~kklk~G~~l~~~~~~~~~~l~~~vi~~~~~g~~~i~f~~~~~~~~~~L~~~G~i-PLPPYI~r~r~~~~~D~~~YQTVy 184 (360) -+++++||.|.|.+ .+.++|.+. -+| .++.++|+..|-- -+|. . ++-+.-.+.|...| T Consensus 32 ~~~ik~GD~I~F~~-----~~~~~V~~v-------~~Y----~sF~ell~~e~l~~~~p~-~----~s~ee~l~~~~~~Y 90 (113) T 1xne_A 32 LKDIKRGDKIIFND-----LIPAEVVEV-------KKY----ETFRQVLREEPIDKIFPD-K----PSFEKALKRFHNMY 90 (113) T ss_dssp TTTCCTTCEEEETT-----TEEEEEEEE-------EEC----SSHHHHHHHSCHHHHCSS-C----CCHHHHHHHHTTSS T ss_pred HHHCCCCCEEEEEC-----EEEEEEEEE-------EEC----CCHHHHHHHCCHHHHCCC-C----CCHHHHHHHHHHHC T ss_conf 86089999999901-----089999899-------982----989999986498761899-9----98999999999778 Q ss_pred CC----CCCCCC Q ss_conf 56----757400 Q gi|254780180|r 185 AK----IQGSVA 192 (360) Q Consensus 185 A~----~~GSVA 192 (360) .+ +.|-|| T Consensus 91 s~e~E~~~GVvA 102 (113) T 1xne_A 91 PKWKEYRYGVLA 102 (113) T ss_dssp SSSCCCCCCCEE T ss_pred CHHHHHHCCEEE T ss_conf 998987548899 No 22 >1kwm_A Procarboxypeptidase B; hydrolase; HET: CIT; 1.60A {Homo sapiens} SCOP: c.56.5.1 d.58.3.1 PDB: 3glj_A 1nsa_A 1pba_A Probab=33.43 E-value=18 Score=15.75 Aligned_cols=132 Identities=19% Similarity=0.211 Sum_probs=69.9 Q ss_pred CHHHHHHHHHHCCC-CEEEEEECCCCCC-CCCCCCCCCCCCCCCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHH Q ss_conf 99999999972155-3037873165665-788741013566770007785999999998753798099962878998999 Q gi|254780180|r 201 TSNLLSRLISIGIK-VYFVTLHVGAGTF-MPVKVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLET 278 (360) Q Consensus 201 t~~ll~~L~~kGi~-~~~iTLHVG~GTF-~Pi~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs 278 (360) |..+.+-+.+..-+ ..+|++|-+.+-+ -|-... -....-+.+...+....+++|.+.. |...-+|+.. +. T Consensus 268 t~al~~~~~~~~~~i~~~i~~HS~g~~i~yP~g~~-~~~~~~~~~~~~~a~~~~~ai~~~~---g~~y~~g~~~----~~ 339 (402) T 1kwm_A 268 TKALADFIRNKLSSIKAYLTIHSYSQMMIYPYSYA-YKLGENNAELNALAKATVKELASLH---GTKYTYGPGA----TT 339 (402) T ss_dssp HHHHHHHHHHTTTTEEEEEEEEESSCEEEESCSSS-SCCCTTHHHHHHHHHHHHHHHHHHH---CCCCEEEEHH----HH T ss_pred HHHHHHHHHHCCCCEEEEEEECCCCCEEEECCCCC-CCCCCCHHHHHHHHHHHHHHHHHHH---CCCCCCCCCC----CC T ss_conf 99999999856777499998068884588277788-8899797999999999999999975---9978547760----51 Q ss_pred HHHCCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCHHHHHHH-HHHHHCHHHHHHHHHHHHHCCC Q ss_conf 985289846888722366574096114312552775545789999-9987198999999999998698 Q gi|254780180|r 279 ATTEDGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPKSTLLML-VSAFCGIEETKKMYQHAISHAY 345 (360) Q Consensus 279 ~~~~~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~Stll~L-v~Af~G~~~~~~~Y~~Ai~~~y 345 (360) .+...|....|.- +..+.+.|.+.+-|.==-+|.+|.+-..-. -..|+| ++.+-++++++.| T Consensus 340 lY~~~G~s~Dw~y--~~~~~~s~t~EL~d~g~~GF~lP~~~I~~~~~E~~~~---~~~~~~~i~~~~~ 402 (402) T 1kwm_A 340 IYPAAGGSDDWAY--DQGIRYSFTFELRDTGRYGFLLPESQIRATCEETFLA---IKYVASYVLEHLY 402 (402) T ss_dssp TCCCSCCHHHHHH--HTTCSEEEEEEESCSSSSGGGCCGGGHHHHHHHHHHH---HHHHHHHHHTSCC T ss_pred CCCCCCHHHHHHC--CCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHCCC T ss_conf 5147756987645--4698199999958999899889989968889999999---9999999984569 No 23 >2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A Probab=33.13 E-value=23 Score=14.98 Aligned_cols=22 Identities=14% Similarity=0.434 Sum_probs=19.2 Q ss_pred CHHHHHHHHHHHHCCCEEEEEC Q ss_conf 5999999998753798099962 Q gi|254780180|r 248 DAPTAQALNSVKSRGGRIVSVG 269 (360) Q Consensus 248 ~~~~~~~I~~ak~~g~rIiAVG 269 (360) +++.+++++.||+.|-++||+- T Consensus 144 s~nvi~al~~Ak~~G~~ti~lT 165 (212) T 2i2w_A 144 SANVIKAIAAAREKGMKVITLT 165 (212) T ss_dssp CHHHHHHHHHHHHHTCEEEEEE T ss_pred CCCHHHHHHHHHHCCCEEEEEE T ss_conf 8328999999998599899997 No 24 >3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* Probab=32.28 E-value=23 Score=14.88 Aligned_cols=64 Identities=16% Similarity=0.124 Sum_probs=44.6 Q ss_pred CCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHEEECHHHHHHHHHHHHCCCEEEE---ECH Q ss_conf 5688789999999997215530378731656657887410135667700077859999999987537980999---628 Q gi|254780180|r 195 TAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGRIVS---VGT 270 (360) Q Consensus 195 TAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~~g~rIiA---VGT 270 (360) +.| .++++.+++|++.|+.. +++|+.|+.|..-+.+... | -.++..+.+..+++.|-++.+ ||- T Consensus 136 ~~g-~~~~e~l~~L~~aG~~~----~~~~~et~~~~~~~~i~~~--~-----~~~~~~~~i~~~~~~Gi~v~~~~i~Gl 202 (348) T 3iix_A 136 SLG-EWPREYYEKWKEAGADR----YLLRHETANPVLHRKLRPD--T-----SFENRLNCLLTLKELGYETGAGSMVGL 202 (348) T ss_dssp ECC-CCCHHHHHHHHHHTCCE----EECCCBCSCHHHHHHHSTT--S-----CHHHHHHHHHHHHHTTCEEEECBEESC T ss_pred CCC-CCHHHHHHHHHHHCCCE----EEECHHHCCHHHEEECCCC--C-----CCCHHHHHHHHHHHCCCEEEEEEEEEC T ss_conf 245-43089999999828967----9856344340212201147--7-----731246776677624972788899945 No 25 >2boa_A Carboxypeptidase A4; metalloprocarboxypeptidase, X-RAY zymogen, metalloprotease, exopropeptidase, hydrolase; HET: NAG; 2.20A {Homo sapiens} SCOP: c.56.5.1 d.58.3.1 Probab=32.09 E-value=23 Score=14.86 Aligned_cols=130 Identities=22% Similarity=0.283 Sum_probs=65.9 Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCCC-CCCCCCCCCCCCCCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHH Q ss_conf 99999997215530378731656657-88741013566770007785999999998753798099962878998999985 Q gi|254780180|r 203 NLLSRLISIGIKVYFVTLHVGAGTFM-PVKVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATT 281 (360) Q Consensus 203 ~ll~~L~~kGi~~~~iTLHVG~GTF~-Pi~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~ 281 (360) .+.+-+.+..=-..+|++|-+.+-+. |-.. .-....=+.+...+....+++|.+.. |...-+|+.+ +..+. T Consensus 273 al~~~~~~~~~~~~~i~~HSyg~~i~~P~g~-~~~~~p~~~~l~~~a~~~a~ai~~~~---g~~Y~~g~~~----~~lY~ 344 (404) T 2boa_A 273 SVVDFIQKHGNFKGFIDLHSYSQLLMYPYGY-SVKKAPDAEELDKVARLAAKALASVS---GTEYQVGPTC----TTVYP 344 (404) T ss_dssp HHHHHHHHHCCEEEEEEEEESSCEEEESCSS-CSCCCTTHHHHHHHHHHHHHHHHHHH---CCCCEEEEHH----HHSCC T ss_pred HHHHHHHHCCCEEEEEEEECCCCEEEECCCC-CCCCCCCHHHHHHHHHHHHHHHHHHH---CCCCCCCCCC----CEEEE T ss_conf 9999997326458999950688478837889-75668898999999999999998824---9988517563----53041 Q ss_pred CCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCHHHHHHHHH-HHHCHHHHHHHHHHHHHCCC Q ss_conf 28984688872236657409611431255277554578999999-87198999999999998698 Q gi|254780180|r 282 EDGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPKSTLLMLVS-AFCGIEETKKMYQHAISHAY 345 (360) Q Consensus 282 ~~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~Stll~Lv~-Af~G~~~~~~~Y~~Ai~~~y 345 (360) ..|....|.- ...+.+.|.+.+-|.--..|++|.+...-... .|+| ++..-+++.+|.| T Consensus 345 a~G~s~Dw~y--~~~~~~s~t~EL~d~g~~GF~lp~~~I~p~~~E~~~g---~~~~~~~i~~~~~ 404 (404) T 2boa_A 345 ASGSSIDWAY--DNGIKFAFTFELRDTGTYGFLLPANQIIPTAEETWLG---LKTIMEHVRDNLY 404 (404) T ss_dssp CCSCHHHHHH--HTTCSEEEEEEESCSSSSTTSCCGGGHHHHHHHHHHH---HHHHHHHHHHTCC T ss_pred CCCHHHHHHH--HCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHCCC T ss_conf 4772775643--3699289999956898899779979808889999999---9999999986589 No 26 >1r1m_A Outer membrane protein class 4; 1.90A {Neisseria meningitidis} SCOP: d.79.7.1 Probab=31.30 E-value=23 Score=14.88 Aligned_cols=78 Identities=18% Similarity=0.197 Sum_probs=45.3 Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHEEECHHHHHHHHHHHHCCCEE-EEECHHHHHHHHHHHH Q ss_conf 999999972155303787316566578874101356677000778599999999875379809-9962878998999985 Q gi|254780180|r 203 NLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGRI-VSVGTTSLRLLETATT 281 (360) Q Consensus 203 ~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~~g~rI-iAVGTT~~R~LEs~~~ 281 (360) .+.+-|.++||.-.-|+- +|+|..+|+-.++.+....-...-......-+.+..+-+.++|| |-|-++..+.+.-+.+ T Consensus 74 aV~~~L~~~Gi~~~ri~~-~g~Ge~~P~~~n~t~~~~a~~~~~~~~~~~r~~~i~~~~~NRRVEi~v~~~~~~~~~P~~~ 152 (164) T 1r1m_A 74 VVANNLVSNGVPVSRISA-VGLGESQAQMTQVCEAEVAKLGAKVSKAKKREALIACIEPDRRVDVKIRSIVTRQVVPAHN 152 (164) T ss_dssp HHHHHHHHTTCCGGGEEE-EECTTTTCCCHHHHHHHHHTCCSSCCSSHHHHHHHHHTGGGSEEEEEEEEEC--------- T ss_pred HHHHHHHHCCCCHHHEEE-EEECCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCEECCCCCC T ss_conf 999999985999899899-9976768889897978874214410000004666530378898899996146113279853 No 27 >3icj_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structure initiative; HET: KCX; 1.95A {Pyrococcus furiosus} PDB: 3etk_A* 3igh_X* Probab=31.08 E-value=19 Score=15.48 Aligned_cols=22 Identities=9% Similarity=0.043 Sum_probs=9.0 Q ss_pred CCCCCCCCCCCEEECCCCCCEEE Q ss_conf 98468887223665740961143 Q gi|254780180|r 284 GIINPWSGFTNIFITPGYRFRAV 306 (360) Q Consensus 284 ~~~~~~~g~T~lfI~Pg~~f~~v 306 (360) |.+.++. ..||.|.-+-+++-+ T Consensus 484 GsI~~Gk-~ADlVv~D~dPLe~i 505 (534) T 3icj_A 484 GKLERGF-RAEYIILDRDPLKEM 505 (534) T ss_dssp SCCSTTS-BCCEEEESSCTTC-- T ss_pred EEECCCC-CCCEEEECCCCCCCH T ss_conf 4868898-322899899800043 No 28 >3pfm_A Ggdef domain protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics, EAL domain; 2.91A {Pseudomonas fluorescens} Probab=30.93 E-value=21 Score=15.22 Aligned_cols=81 Identities=10% Similarity=-0.024 Sum_probs=54.8 Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHEE-EC-----HHH-HHHHHHHHHCCCEEEEECHHHHH Q ss_conf 999999997215530378731656657887410135667700077-85-----999-99999875379809996287899 Q gi|254780180|r 202 SNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGF-ID-----APT-AQALNSVKSRGGRIVSVGTTSLR 274 (360) Q Consensus 202 ~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~-i~-----~~~-~~~I~~ak~~g~rIiAVGTT~~R 274 (360) .+++++|++.|+.++-=-.-.|.+.|..+..=.++--|++.++.. ++ ..- ...+.-|+.-|-+|||-|=-+-- T Consensus 139 ~~~l~~l~~~G~~i~idd~g~~~~~~~~l~~l~~~~vKld~~~~~~~~~~~~~~~~v~~i~~~a~~~~i~via~gVe~~~ 218 (243) T 3pfm_A 139 EQLTRRLRELGFSLSLQRFGGRFSMIGNLARLGLAYLKIDGSYIRDIDQESDKRLFIEAIQRAAHSIDLPLIAERVETEG 218 (243) T ss_dssp HHHHHHHHHHTCEEEEEEETTTGGGGGGHHHHTCSEEEECGGGGTTTTTCTHHHHHHHHHHHHHHHTTCCEEECCCCSHH T ss_pred HHHHHHHHHHCCCEEEECCCCCCCCHHHHHCCCHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHH T ss_conf 99999999728966871269985435554224401310439998453312567899999999999859989998188499 Q ss_pred HHHHHHHC Q ss_conf 89999852 Q gi|254780180|r 275 LLETATTE 282 (360) Q Consensus 275 ~LEs~~~~ 282 (360) .++.+..- T Consensus 219 ~~~~l~~~ 226 (243) T 3pfm_A 219 ELQVIREM 226 (243) T ss_dssp HHHHHHHH T ss_pred HHHHHHHC T ss_conf 99999985 No 29 >1dtd_A Carboxypeptidase A2; carboxypeptidase A2, leech carboxypeptidase inhibitor, hydrolase/hydrolase inhibitor complex; HET: GLU; 1.65A {Homo sapiens} SCOP: c.56.5.1 Probab=30.43 E-value=25 Score=14.67 Aligned_cols=129 Identities=21% Similarity=0.253 Sum_probs=64.3 Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCCC-CCCCCCCCCCCCCCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHH Q ss_conf 99999997215530378731656657-88741013566770007785999999998753798099962878998999985 Q gi|254780180|r 203 NLLSRLISIGIKVYFVTLHVGAGTFM-PVKVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATT 281 (360) Q Consensus 203 ~ll~~L~~kGi~~~~iTLHVG~GTF~-Pi~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~ 281 (360) .+.+-+++..--..+|++|-+..-+. |-... -..-.-+.+...+....++++.+.... ..-+|.... ..+. T Consensus 172 al~~~~~~~~~~~~~l~~Hs~~~~i~yP~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~----~~Y~ 243 (303) T 1dtd_A 172 SIVDFIKSHGKVKAFIILHSYSQLLMFPYGYK-CTKLDDFDELSEVAQKAAQSLSRLHGT---KYKVGPICS----VIYQ 243 (303) T ss_dssp HHHHHHHHHCCEEEEEEEEESSCEEEESCSSC-CSCCTTHHHHHHHHHHHHHHHHHHHCC---CCEEEEHHH----HTCC T ss_pred HHHHHHHHCCCCEEEEEECCCCCEEEECCCCC-CCCCCCHHHHHHHHHHHHHHHHHHCCC---CCCCCCCCC----CCCC T ss_conf 99999985256339998328986798367788-788998799999999999999972387---665478536----0223 Q ss_pred CCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCHHHHHHHHH-HHHCHHHHHHHHHHHHHCC Q ss_conf 28984688872236657409611431255277554578999999-8719899999999999869 Q gi|254780180|r 282 EDGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPKSTLLMLVS-AFCGIEETKKMYQHAISHA 344 (360) Q Consensus 282 ~~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~Stll~Lv~-Af~G~~~~~~~Y~~Ai~~~ 344 (360) ..|....|.. +..+.+.|.+.+-|.=-..|++|.+.+..+.. +..| ++..-+++.+.- T Consensus 244 ~~G~~~Dw~y--~~~~~~s~T~El~~~g~~gf~~p~~~i~~~~~e~~~~---~~~~~~~~~~~p 302 (303) T 1dtd_A 244 ASGGSIDWSY--DYGIKYSFAFELRDTGRYGFLLPARQILPTAEETWLG---LKAIMEHVRDHP 302 (303) T ss_dssp CTTCHHHHHH--HHTCCEEEEEEESCSSSSTTCCCGGGHHHHHHHHHHH---HHHHHHHHHHSC T ss_pred CCCHHHHHHH--HCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHCC T ss_conf 6772987862--5598189999967898899859989989999999999---999999998768 No 30 >3kw0_A Cysteine peptidase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2, plasmid; HET: LYS; 2.50A {Bacillus cereus atcc 10987} Probab=30.00 E-value=25 Score=14.63 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=19.1 Q ss_pred EEEEEHHHHHHHCCCCCEEEEECC Q ss_conf 531014347872698879999479 Q gi|254780180|r 41 ISDHLVSDLPAFLNSNDAIVFNNT 64 (360) Q Consensus 41 i~h~~F~dl~~~L~~gDLLV~NnT 64 (360) +.-..|.+|.+.|++||+|.++.. T Consensus 28 ~~~~~~e~~~~~LktGDIlL~~g~ 51 (214) T 3kw0_A 28 IKIDKYENLINVLKTGDIFLCSGN 51 (214) T ss_dssp CCEECHHHHTTTCCTTCEEEEEEC T ss_pred CCHHHHHHHHHCCCCCCEEEEECC T ss_conf 578899999961689788999689 No 31 >2r5f_A Transcriptional regulator, putative; transcription regulator, sugar-binding domain, structural genomics, PFAM04198, PSI-2; 2.10A {Pseudomonas syringae PV} SCOP: c.124.1.8 Probab=29.93 E-value=25 Score=14.61 Aligned_cols=110 Identities=9% Similarity=0.091 Sum_probs=62.8 Q ss_pred CCCCCHHHCCCCCCC-CCCHHHHCCCCCCC---------CCCCCC----CCCCCCCCHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 357852221234565-21143310134567---------574005----5568878999999999721553037873165 Q gi|254780180|r 159 TIPLPPYIARKRPID-ARDYVDYQTTYAKI---------QGSVAA----PTAGLHFTSNLLSRLISIGIKVYFVTLHVGA 224 (360) Q Consensus 159 ~iPLPPYI~r~r~~~-~~D~~~YQTVyA~~---------~GSVAA----PTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~ 224 (360) .+|-|-|......-+ -.....+|.++..- -|++.. ...|..++++.++.|+++|.- ..| . T Consensus 121 ~l~aP~~~~s~~~~~~l~~~~~v~~~l~~~~~~diav~gIG~~~~~s~~~~~g~~~~~~~~~~l~~~gAV-Gdi-----~ 194 (264) T 2r5f_A 121 LLPSQSIEQSVESKQRIVEMEEVKEVLHRFDSITLAIVGIGELEPSQLLRNSGNYYTEDMLRVLAERGAV-GDI-----C 194 (264) T ss_dssp CCCCC----------CCHHHHHHHHHHHHTTTCCEEEECCEECC-------------------CTTTTCC-EEE-----T T ss_pred ECCCCHHCCCHHHHHHHHHCHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHCCCCCCHHHHHHHHHCCEE-EEE-----E T ss_conf 2057010068999999985938999999997599999954788766214550687999999999878939-996-----8 Q ss_pred CCCCCCCCCCCCCCCCCCHHEEECHHHHHHHHHHHHCCCEE-EEECHHHHHHHHHHHH Q ss_conf 66578874101356677000778599999999875379809-9962878998999985 Q gi|254780180|r 225 GTFMPVKVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGRI-VSVGTTSLRLLETATT 281 (360) Q Consensus 225 GTF~Pi~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~~g~rI-iAVGTT~~R~LEs~~~ 281 (360) |.|--..-+- -++.++.--..|+-+...+|. .+| ||-|..=+.++-+|.. T Consensus 195 g~f~D~~G~~-v~~~~~~r~igi~l~~Lr~i~------~~I~VA~G~~K~~AI~aALr 245 (264) T 2r5f_A 195 LRYFDAQGKP-VLEEDEEFVVSMGLGKLRSIN------RVLGLAGGVRKVQAIKGALL 245 (264) T ss_dssp TEEECTTSCB-C-------CEECCHHHHHTSS------EEEEECCCGGGHHHHHHHHH T ss_pred EEEECCCCCC-CCCCCCCCEECCCHHHHCCCC------CEEEEECCHHHHHHHHHHHH T ss_conf 1268568989-865440235147878956799------68999667465999999983 No 32 >2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii DSM2661} Probab=29.78 E-value=21 Score=15.17 Aligned_cols=64 Identities=25% Similarity=0.248 Sum_probs=39.7 Q ss_pred HCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHEEECHHHHHHHHHHH Q ss_conf 10134567574005556887899999999972155303787316566578874101356677000778599999999875 Q gi|254780180|r 180 YQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGFIDAPTAQALNSVK 259 (360) Q Consensus 180 YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~i~~~~~~~I~~ak 259 (360) =|.++....||- |- +.|.++|..+ |+++.- || |||.=..-.++-+.|++++ T Consensus 58 aQn~~~~~~Ga~---TG--eis~~~l~~~---G~~~vi----iG-----------------HSErR~~~~e~~~~i~~~~ 108 (219) T 2h6r_A 58 AQHIDNINPGSH---TG--HILAEAIKDC---GCKGTL----IN-----------------HSEKRMLLADIEAVINKCK 108 (219) T ss_dssp ESCCCSCCSBSC---TT--CCCHHHHHHH---TCCEEE----ES-----------------BTTBCCBHHHHHHHHHHHH T ss_pred EEECCCCCCCCC---CC--HHHHHHHHHC---CCCEEE----EC-----------------CHHHHHHHCCCHHHHHHHH T ss_conf 403686568875---10--2039999970---997899----64-----------------3255444312116388998 Q ss_pred HCCC-EEEEECHHH Q ss_conf 3798-099962878 Q gi|254780180|r 260 SRGG-RIVSVGTTS 272 (360) Q Consensus 260 ~~g~-rIiAVGTT~ 272 (360) +.|- .|+|||++. T Consensus 109 ~~gl~~i~Cvge~~ 122 (219) T 2h6r_A 109 NLGLETIVCTNNIN 122 (219) T ss_dssp HHTCEEEEEESSSH T ss_pred HCCCEEEEEECCHH T ss_conf 78993799847588 No 33 >2bo9_A Carboxypeptidase A4; metallocarboxypeptidase, X-RAY endogenous protein inhibitor, metalloprotease carboxypeptidase, hydrolase; HET: NAG; 1.6A {Homo sapiens} SCOP: c.56.5.1 PDB: 2pcu_A* Probab=27.51 E-value=28 Score=14.33 Aligned_cols=131 Identities=21% Similarity=0.269 Sum_probs=61.8 Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCC-CCCCCCCCCCCCCCCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHH Q ss_conf 99999999721553037873165665-78874101356677000778599999999875379809996287899899998 Q gi|254780180|r 202 SNLLSRLISIGIKVYFVTLHVGAGTF-MPVKVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETAT 280 (360) Q Consensus 202 ~~ll~~L~~kGi~~~~iTLHVG~GTF-~Pi~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~ 280 (360) ..+.+-+++..=-..+|.+|-+.+-+ -|-... -....-+.+...+....+.++.+.. +.-..+|+.. +..+ T Consensus 176 ~al~~~~~~~~~~~~~i~~Hs~~~~i~yP~~~~-~~~~p~~~~~~~~~~~~a~~~~~~~---g~~y~~g~~~----~~~Y 247 (308) T 2bo9_A 176 KSVVDFIQKHGNFKGFIDLHSYSQLLMYPYGYS-VKKAPDAEELDKVARLAAKALASVS---GTEYQVGPTC----TTVY 247 (308) T ss_dssp HHHHHHHHHHCCEEEEEEEEESSSEEEESCSSC-SSCCTTHHHHHHHHHHHHHHHHHHH---CCCCEEEEHH----HHTC T ss_pred HHHHHHHHHCCCEEEEEEECCCCCEEEECCCCC-CCCCCCHHHHHHHHHHHHHHHHHHH---CCCCCCCCCC----CCCC T ss_conf 999999983776038887236885687268888-7779898999999999999999841---9887405576----7101 Q ss_pred HCCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCHHHHHHHHH-HHHCHHHHHHHHHHHHHCCC Q ss_conf 528984688872236657409611431255277554578999999-87198999999999998698 Q gi|254780180|r 281 TEDGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPKSTLLMLVS-AFCGIEETKKMYQHAISHAY 345 (360) Q Consensus 281 ~~~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~Stll~Lv~-Af~G~~~~~~~Y~~Ai~~~y 345 (360) ...|....|.- +..+.+.+.+.+-|.=-..|++|.+...-+.. .+.| ++..-+++.+|-| T Consensus 248 ~~~G~~~Dw~y--~~~~~~a~t~El~~~g~~gf~~p~~~i~~~~~e~~~~---~~~~~~~i~~~~~ 308 (308) T 2bo9_A 248 PASGSSIDWAY--DNGIKFAFTFELRDTGTYGFLLPANQIIPTAEETWLG---LKTIMEHVRDNLY 308 (308) T ss_dssp CCCSCHHHHHH--HTTCCEEEEEEESCSSSSTTCCCGGGHHHHHHHHHHH---HHHHHHHHHTTCC T ss_pred CCCCCHHHHHH--HCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHCCC T ss_conf 46883776761--2698089999957898899769989948889999999---9999999986589 No 34 >1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1 Probab=27.29 E-value=28 Score=14.30 Aligned_cols=64 Identities=20% Similarity=0.152 Sum_probs=37.0 Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHEEECHHHHHHHHHHHH Q ss_conf 01345675740055568878999999999721553037873165665788741013566770007785999999998753 Q gi|254780180|r 181 QTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGFIDAPTAQALNSVKS 260 (360) Q Consensus 181 QTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~ 260 (360) |.++....|+- | =+.+.+++. +-|+++.-| | |+|.=..-.++.+.++++++ T Consensus 62 Q~~~~~~~Ga~---T--G~is~~~l~---~~g~~~vii----g-----------------HsErR~~~~e~~~~v~~a~~ 112 (226) T 1w0m_A 62 QGADVEAGGAH---T--AHVSLENIK---EAGGSGVIL----N-----------------HSEAPLKLNDLARLVAKAKS 112 (226) T ss_dssp SCCSBSSCSSC---T--TCCBHHHHH---HHTCCEEEE----C-----------------CTTSCCBHHHHHHHHHHHHH T ss_pred ECCCCCCCCCC---C--CHHHHHHHH---HCCCCEEEE----C-----------------CHHHHHHHCHHHHHHHHHHH T ss_conf 04788789887---0--665699998---759979997----4-----------------36877651006899999998 Q ss_pred CCCE-EEEECHHHH Q ss_conf 7980-999628789 Q gi|254780180|r 261 RGGR-IVSVGTTSL 273 (360) Q Consensus 261 ~g~r-IiAVGTT~~ 273 (360) .|-. |+|||++.. T Consensus 113 ~gl~~IvCvge~~e 126 (226) T 1w0m_A 113 LGLDVVVCAPDPRT 126 (226) T ss_dssp TTCEEEEEESSHHH T ss_pred CCCEEEEECCCCHH T ss_conf 89989997587199 No 35 >1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3 Probab=26.19 E-value=29 Score=14.17 Aligned_cols=21 Identities=14% Similarity=0.107 Sum_probs=14.7 Q ss_pred CHHHHHHHHHHHHCCCEEEEE Q ss_conf 599999999875379809996 Q gi|254780180|r 248 DAPTAQALNSVKSRGGRIVSV 268 (360) Q Consensus 248 ~~~~~~~I~~ak~~g~rIiAV 268 (360) ++...++++.||+.|-++|++ T Consensus 123 s~nii~a~~~Ak~~g~~~i~l 143 (188) T 1tk9_A 123 SPNVLEALKKAKELNMLCLGL 143 (188) T ss_dssp CHHHHHHHHHHHHTTCEEEEE T ss_pred CCCHHHHHHHHHHCCCEEEEE T ss_conf 955778999999879989999 No 36 >3gt2_A Putative uncharacterized protein; P60 domain, antigen, unknown function; HET: EDO; 1.75A {Mycobacterium avium subsp} Probab=24.11 E-value=32 Score=13.90 Aligned_cols=15 Identities=13% Similarity=0.175 Sum_probs=8.8 Q ss_pred HHCCCCCEEEEECCC Q ss_conf 726988799994795 Q gi|254780180|r 51 AFLNSNDAIVFNNTK 65 (360) Q Consensus 51 ~~L~~gDLLV~NnTK 65 (360) +-++||||++|+... T Consensus 88 ~~~~pGDLvff~~~~ 102 (142) T 3gt2_A 88 QQARKGDLIFYGPEG 102 (142) T ss_dssp GGCCTTCEEEESGGG T ss_pred CCCCCCEEEEECCCC T ss_conf 579998189956999 No 37 >2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A Probab=24.10 E-value=32 Score=13.90 Aligned_cols=67 Identities=18% Similarity=0.285 Sum_probs=43.4 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHEEECHHHHHHHHHHHHCCCEEEEEC Q ss_conf 40055568878999999999721553037873165665788741013566770007785999999998753798099962 Q gi|254780180|r 190 SVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGRIVSVG 269 (360) Q Consensus 190 SVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~~g~rIiAVG 269 (360) ++++--||..+-+.|.+.|+++|+++.. +||+..-.+ .|-.+....++.+.+-+.. +=|+-.| T Consensus 5 ~igsDhaG~~lK~~l~~~L~~~g~ev~D------~G~~~~~~~----------DYpd~a~~~a~~v~~~~~~-~GIliCG 67 (149) T 2vvr_A 5 AFGCDHVGFILKHEIVAHLVERGVEVID------KGTWSSERT----------DYPHYASQVALAVAGGEVD-GGILICG 67 (149) T ss_dssp EEEECTTGGGGHHHHHHHHHHTTCEEEE------CCCCSSSCC----------CHHHHHHHHHHHHHTTSSS-EEEEEES T ss_pred EEEECCHHHHHHHHHHHHHHHCCCEEEE------CCCCCCCCC----------CCCHHHHHHHHHHCCCCCC-EEEEECC T ss_conf 9975870799999999999987998997------899835577----------8407899999986057754-2589558 Q ss_pred HHHH Q ss_conf 8789 Q gi|254780180|r 270 TTSL 273 (360) Q Consensus 270 TT~~ 273 (360) |=.= T Consensus 68 tG~G 71 (149) T 2vvr_A 68 TGVG 71 (149) T ss_dssp SSHH T ss_pred CCCH T ss_conf 9846 No 38 >1jid_A Signal recognition particle 19 kDa protein; signal recognition particle (SRP), protein-RNA complex, GGAG tetraloop, signaling protein/RNA complex; HET: 5BU A23; 1.80A {Homo sapiens} SCOP: d.201.1.1 PDB: 3ktv_B* 1mfq_B* 1ry1_B* 2go5_B 2j37_B Probab=23.51 E-value=33 Score=13.82 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=8.7 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCC Q ss_conf 400555688789999999997215 Q gi|254780180|r 190 SVAAPTAGLHFTSNLLSRLISIGI 213 (360) Q Consensus 190 SVAAPTAGLHFt~~ll~~L~~kGi 213 (360) ||..||+ .++.+.++.-|+ T Consensus 40 aV~~Pt~-----~EI~~a~~~Lgl 58 (128) T 1jid_A 40 AVENPTA-----TEIQDVCSAVGL 58 (128) T ss_dssp CBSSCCH-----HHHHHHHHHTTC T ss_pred HCCCCCH-----HHHHHHHHHCCC T ss_conf 4679899-----999999998599 No 39 >1pca_A Procarboxypeptidase A PCPA; hydrolase(C-terminal peptidase); HET: CIT; 2.00A {Sus scrofa} SCOP: d.58.3.1 PDB: 1pyt_A Probab=23.45 E-value=14 Score=16.49 Aligned_cols=114 Identities=20% Similarity=0.272 Sum_probs=61.0 Q ss_pred HHHHHHHHCCCCEEEEEECCCCCC-CCC--CCCCCCCCCCCCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHH Q ss_conf 999999721553037873165665-788--74101356677000778599999999875379809996287899899998 Q gi|254780180|r 204 LLSRLISIGIKVYFVTLHVGAGTF-MPV--KVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETAT 280 (360) Q Consensus 204 ll~~L~~kGi~~~~iTLHVG~GTF-~Pi--~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~ 280 (360) +.+-++.++--.++|++|-+.+-+ -|- +.+...+ +.+...+....+.+|.... |.-..+|+.. .+| + T Consensus 274 l~~~~~~~~~i~~~i~~HS~g~~i~yP~g~~~~~~~~---~~~l~~~~~~~a~ai~~~~---g~~y~~g~~~-~~l---Y 343 (403) T 1pca_A 274 ITDFVKNNGNIKAFISIHSYSQLLLYPYGYKTQSPAD---KSELNQIAKSAVAALKSLY---GTSYKYGSII-TVI---Y 343 (403) T ss_dssp -------------------------------------------------------------------------------- T ss_pred HHHHHHHCCCEEEEEEECCCCCEEEECCCCCCCCCCC---HHHHHHHHHHHHHHHHHHH---CCCCCCCCCC-CCC---C T ss_conf 9999872267479999537897688367787779989---9999999999999988862---9877548865-634---2 Q ss_pred HCCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCHHHHHHH-HHHHHC Q ss_conf 5289846888722366574096114312552775545789999-998719 Q gi|254780180|r 281 TEDGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPKSTLLML-VSAFCG 329 (360) Q Consensus 281 ~~~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~Stll~L-v~Af~G 329 (360) ...|....|.-. ..|.+.|.+.+-|.=-.+|++|.|-..-. -..++| T Consensus 344 ~~~G~s~Dw~y~--~~~~~s~t~EL~~~g~~gF~lP~~~I~p~~~E~~~~ 391 (403) T 1pca_A 344 QASGGVIDWTYN--QGIKYSFSFELRDTGRRGFLLPASQIIPTAQETWLA 391 (403) T ss_dssp -------------------------------------------------- T ss_pred CCCCCHHHHHCC--CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 477667777531--799389999975898899789999999999999999 No 40 >3k7p_A Ribose 5-phosphate isomerase; pentose phosphate pathway, type B ribose 5-phosphate isomera (RPIB), R5P; 1.40A {Trypanosoma cruzi strain cl brener} PDB: 3k7s_A* 3k7o_A* 3k8c_A* Probab=23.03 E-value=33 Score=13.76 Aligned_cols=73 Identities=11% Similarity=0.064 Sum_probs=47.1 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHEEECHHHHHHHHHHHHCCCEEEEE Q ss_conf 74005556887899999999972155303787316566578874101356677000778599999999875379809996 Q gi|254780180|r 189 GSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGRIVSV 268 (360) Q Consensus 189 GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~~g~rIiAV 268 (360) =++++=-||.++-+.|.+-|+++|+++..+ |.||...-.++ |-.+....++.|.+-+.. +=|+-. T Consensus 25 I~IgsDHaG~~lK~~l~~~L~~~g~ev~D~----~~G~~~~~~~D----------Ypd~a~~va~~V~~~~~~-~GIliC 89 (179) T 3k7p_A 25 VAIGTDHPAFAIHENLILYVKEAGDEFVPV----YCGPKTAESVD----------YPDFASRVAEMVARKEVE-FGVLAA 89 (179) T ss_dssp EEEEECTGGGGGHHHHHHHHHHTCTTEEEE----ECSCSSSSCCC----------HHHHHHHHHHHHHTTSSS-EEEEEE T ss_pred EEEEECCHHHHHHHHHHHHHHHCCCEEEEC----CCCCCCCCCCC----------CHHHHHHHHHHHHHCCCE-EEEEEC T ss_conf 899828628999999999999869979975----88777456678----------378999999998740440-689966 Q ss_pred CHHHHHHH Q ss_conf 28789989 Q gi|254780180|r 269 GTTSLRLL 276 (360) Q Consensus 269 GTT~~R~L 276 (360) ||=.==++ T Consensus 90 GtGiG~sI 97 (179) T 3k7p_A 90 GSGIGMSI 97 (179) T ss_dssp SSSHHHHH T ss_pred CCCHHHHH T ss_conf 99628888 No 41 >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} Probab=22.83 E-value=24 Score=14.72 Aligned_cols=184 Identities=20% Similarity=0.152 Sum_probs=85.4 Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC Q ss_conf 77249997267863000254420357852221234565211433101345675740055568878999999999721553 Q gi|254780180|r 136 TGEILLVFSISGIELERQISLVGTIPLPPYIARKRPIDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKV 215 (360) Q Consensus 136 ~g~~~i~f~~~~~~~~~~L~~~G~iPLPPYI~r~r~~~~~D~~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~ 215 (360) ....++.|+.+. ...+.++..-+...|.-|--..- ++.+.+ .-..++++.+-+-||--++= -.+|.++.+.-... T Consensus 88 ~~DVvIDFS~p~-~~~~~~~~~~~~~~plViGTTG~-~~~~~~-~i~~~~~~~~il~a~NfS~G--v~ll~~~~~~aa~~ 162 (288) T 3ijp_A 88 NTEGILDFSQPQ-ASVLYANYAAQKSLIHIIGTTGF-SKTEEA-QIADFAKYTTIVKSGNMSLG--VNLLANLVKRAAKA 162 (288) T ss_dssp SCSEEEECSCHH-HHHHHHHHHHHHTCEEEECCCCC-CHHHHH-HHHHHHTTSEEEECSCCCHH--HHHHHHHHHHHHHH T ss_pred CCCEEEECCCCH-HHHHHHHHHHHCCCCEEEEECCC-CHHHHH-HHHHHHHCCCEEEECCCHHH--HHHHHHHHHHHHHH T ss_conf 488899899806-76889999987396079830554-422599-99998533988886640077--99999999999987 Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCHHEEECHHHHHHHHHHHHCCCE-----EEEECHHHHHHHHHHHHCCCC----- Q ss_conf 0378731656657887410135667700077859999999987537980-----999628789989999852898----- Q gi|254780180|r 216 YFVTLHVGAGTFMPVKVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGR-----IVSVGTTSLRLLETATTEDGI----- 285 (360) Q Consensus 216 ~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~~g~r-----IiAVGTT~~R~LEs~~~~~~~----- 285 (360) | +. .-..+=++-| |...---|.-||..+.+.-++++. +.-.+.+..+ ..+..+. T Consensus 163 ----l----~~--~~dieI~E~H--H~~K~DaPSGTA~~la~~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~i~s 226 (288) T 3ijp_A 163 ----L----DD--DFDIEIYEMH--HANKVDSPSGTALLLGQAAAEGRNIMLKNVSVNGRSGHT----GKREKGTIGFAC 226 (288) T ss_dssp ----S----CT--TSEEEEEEEE--CTTCCCSSCHHHHHHHHHHHHHTTSCHHHHEEECGGGCC----SCCCTTCEEEEE T ss_pred ----C----CC--CCCCEEEEEC--CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEECCCCCCC----CCCCCCCCCEEE T ss_conf ----3----52--2250888703--456888971999999999997336543322011444776----777788622467 Q ss_pred CCCC--CCC-CCEEECCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCCEEECCCCHH Q ss_conf 4688--872-23665740961143125527755457899999987198999999999998698261101022 Q gi|254780180|r 286 INPW--SGF-TNIFITPGYRFRAVDILMSNFHLPKSTLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTS 354 (360) Q Consensus 286 ~~~~--~g~-T~lfI~Pg~~f~~vd~LiTNFH~P~Stll~Lv~Af~G~~~~~~~Y~~Ai~~~yrF~syGDam 354 (360) ++.+ -|+ |=+|-.||=.+ +=-|.=.|-- +|+ +=...|-++...+.-.+|++-|-+ T Consensus 227 ~R~G~~vg~H~V~f~~~~E~l-------~i~H~a~~R~-----~Fa--~Gal~Aa~~l~~~~~Gly~m~DvL 284 (288) T 3ijp_A 227 SRGGTVIGDHSITFAGENERI-------VLSHIAQERS-----IFA--NGALKAALWAKNHENGLYSMLDVL 284 (288) T ss_dssp EECTTCCEEEEEEEEETTEEE-------EEEEEECCTH-----HHH--HHHHHHHHHHTTCCSEEECHHHHH T ss_pred EECCCCCEEEEEEECCCCCEE-------EEEEEECCHH-----HHH--HHHHHHHHHHHCCCCCEECHHHHC T ss_conf 606997678999970799279-------9999969888-----889--999999999847998786366745 No 42 >3jyv_B 40S ribosomal protein S0(A); eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} PDB: 1s1h_B Probab=22.60 E-value=34 Score=13.70 Aligned_cols=21 Identities=14% Similarity=0.177 Sum_probs=12.6 Q ss_pred HHHHHHHHHHHCCCEEEEECH Q ss_conf 999999987537980999628 Q gi|254780180|r 250 PTAQALNSVKSRGGRIVSVGT 270 (360) Q Consensus 250 ~~~~~I~~ak~~g~rIiAVGT 270 (360) ....+|++|+.-|=+|||+-- T Consensus 120 ~~~~ai~EA~~l~IPvI~ivD 140 (193) T 3jyv_B 120 SDAQAIKEASYVNIPVIALTD 140 (193) T ss_dssp TSHHHHHHHHHTTCCEEEEEC T ss_pred CCHHHHHHHHHCCCCEEEEEC T ss_conf 641666778756998787506 No 43 >1omh_A TRWC protein; protein-DNA complex, bacterial conjugation, relaxase, DNA replication, transferase/DNA complex; HET: DNA; 1.95A {Escherichia coli} SCOP: d.89.1.5 PDB: 1osb_A* 1qx0_A* 1s6m_A* 1zm5_A* 2cdm_A Probab=22.58 E-value=34 Score=13.70 Aligned_cols=31 Identities=19% Similarity=0.404 Sum_probs=21.8 Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCC Q ss_conf 55568878999999999721553037873165665 Q gi|254780180|r 193 APTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTF 227 (360) Q Consensus 193 APTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF 227 (360) ++.+|-.+..+|-.+|++-|+++.. .+-|.| T Consensus 189 ~~~~g~~y~a~La~~l~~lGy~~~~----~~~g~~ 219 (293) T 1omh_A 189 TRYLGAVYNAELAHELQKLGYQLRY----GKDGNF 219 (293) T ss_dssp HHHHHHHHHHHHHHHHHHTTCCEEE----CSSSCE T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEE----CCCCCE T ss_conf 9999999999999999975857753----588833 No 44 >3ofo_B 30S ribosomal protein S2; protein biosynthesis, ribosomes, RNA, tRNA, transfer, eryThr ketolide, macrolide, antibiotic, EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 3fih_B* 2wwl_B 3ofp_B 3i1m_B 1vs7_B* 3e1a_B 3e1c_B 1vs5_B 3i1o_B 3i1q_B 3i1s_B 3i1z_B 3i21_B 3kc4_B 3or9_B 3ora_B 2qal_B* 1p87_B 2aw7_B 2avy_B ... Probab=21.76 E-value=16 Score=16.01 Aligned_cols=22 Identities=14% Similarity=0.149 Sum_probs=15.3 Q ss_pred HHHHHHHHHHHCCCEEEEECHH Q ss_conf 9999999875379809996287 Q gi|254780180|r 250 PTAQALNSVKSRGGRIVSVGTT 271 (360) Q Consensus 250 ~~~~~I~~ak~~g~rIiAVGTT 271 (360) ....+|++|.+-|-+|||+--| T Consensus 160 ~~~~ai~Ea~~l~IPvI~ivDT 181 (218) T 3ofo_B 160 HEHIAIKEANNLGIPVFAIVDT 181 (218) T ss_dssp GGHHHHHHHHHTTCCEEEECCT T ss_pred HHHHHHHHHHHCCCCEEEEEEC T ss_conf 3179999999859977998507 No 45 >2jyx_A Lipoprotein SPR; solution structure, construct optimized, membrane, palmitate, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli K12} PDB: 2k1g_A Probab=21.40 E-value=36 Score=13.54 Aligned_cols=14 Identities=21% Similarity=0.418 Sum_probs=8.0 Q ss_pred HCCCCCEEEEECCC Q ss_conf 26988799994795 Q gi|254780180|r 52 FLNSNDAIVFNNTK 65 (360) Q Consensus 52 ~L~~gDLLV~NnTK 65 (360) -++||||++|+..+ T Consensus 67 ~~~pGDlvff~~~~ 80 (136) T 2jyx_A 67 NLRTGDLVLFRAGS 80 (136) T ss_dssp TCCTTEEEEEECSS T ss_pred CCCCCCEEEECCCC T ss_conf 68999899979899 No 46 >3kzp_A LMO0111 protein, putative diguanylate cyclase/phosphodiesterase; EAL-domain, structural genomics, PSI-2, protein structure initiative; 2.00A {Listeria monocytogenes} Probab=21.34 E-value=30 Score=14.11 Aligned_cols=90 Identities=12% Similarity=0.101 Sum_probs=52.8 Q ss_pred CCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHEE---ECHHH----HH-HHHHHHHCCCEEEEECHH Q ss_conf 89999999997215530378731656657887410135667700077---85999----99-999875379809996287 Q gi|254780180|r 200 FTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGF---IDAPT----AQ-ALNSVKSRGGRIVSVGTT 271 (360) Q Consensus 200 Ft~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~---i~~~~----~~-~I~~ak~~g~rIiAVGTT 271 (360) +-.+.+++|++.|+.++-=-...|..+|.-+..-.++-.|++.+... .+.+. ++ .+.-|+..|-+|||-|=- T Consensus 129 ~~~~~l~~l~~~G~~ialDdfG~g~~~~~~l~~l~~d~iKid~~~~~~~~~~~~~~~~~v~~i~~~a~~~~~~vIaegVE 208 (235) T 3kzp_A 129 FILNKIKVIHGLGYHIAIDDVSCGLNSLERVMSYLPYIIEIKFSLIHFKNIPLEDLLLFIKAWANFAQKNKLDFVVEGIE 208 (235) T ss_dssp HHHHHHHHHHHTTCEEEECSTTSTTCCHHHHHHHGGGCSEEEEEGGGGTTSCHHHHHHHHHHHHHHHHHTTCEEEEEEEC T ss_pred HHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHCCCCEECCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC T ss_conf 99999999997699688525798741077885279867614156776530231126899999999999869989997189 Q ss_pred HHHHHHHHHHCCCCCCCCCC Q ss_conf 89989999852898468887 Q gi|254780180|r 272 SLRLLETATTEDGIINPWSG 291 (360) Q Consensus 272 ~~R~LEs~~~~~~~~~~~~g 291 (360) +-..++.+.. -| +.-.+| T Consensus 209 t~~~~~~l~~-lG-vd~~QG 226 (235) T 3kzp_A 209 TKETMTLLES-HG-VSIFQG 226 (235) T ss_dssp STHHHHHHHH-TT-CCSCEE T ss_pred CHHHHHHHHH-CC-CCEEEC T ss_conf 5999999998-69-999644 No 47 >2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, alternative splicing, hydrolase, metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A Probab=21.32 E-value=36 Score=13.53 Aligned_cols=91 Identities=13% Similarity=0.038 Sum_probs=46.6 Q ss_pred CCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHEEE------CH--HHHHHHHHHHHCCCEEEEECHH Q ss_conf 899999999972155303787316566578874101356677000778------59--9999999875379809996287 Q gi|254780180|r 200 FTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGFI------DA--PTAQALNSVKSRGGRIVSVGTT 271 (360) Q Consensus 200 Ft~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~i------~~--~~~~~I~~ak~~g~rIiAVGTT 271 (360) -..++|+.|+++|+.++-+|- +-.+.-...+.++.....++.. |+ .-...+.+..-....++-||=+ T Consensus 72 gv~e~L~~Lk~~Gi~laI~S~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~pkp~~~~~~l~~l~i~p~~~l~igDs 146 (187) T 2wm8_A 72 EVPEVLKRLQSLGVPGAAASR-----TSEIEGANQLLELFDLFRYFVHREIYPGSKITHFERLQQKTGIPFSQMIFFDDE 146 (187) T ss_dssp THHHHHHHHHHHTCCEEEEEC-----CSCHHHHHHHHHHTTCTTTEEEEEESSSCHHHHHHHHHHHHCCCGGGEEEEESC T ss_pred HHHHHHHHHHHCCCEEEEECC-----CCCHHHHHHHHHHCCCHHEEECCCCCCCCCCHHHHHHHHHHCCCHHHEEEECCC T ss_conf 599999999988980895058-----970899998876336112121022477656368999999968987898996485 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCE Q ss_conf 899899998528984688872236657409611 Q gi|254780180|r 272 SLRLLETATTEDGIINPWSGFTNIFITPGYRFR 304 (360) Q Consensus 272 ~~R~LEs~~~~~~~~~~~~g~T~lfI~Pg~~f~ 304 (360) . +-+|+|.. .|-+-+.+.-||... T Consensus 147 ~-~Di~aA~~--------aGi~~i~V~~G~t~~ 170 (187) T 2wm8_A 147 R-RNIVDVSK--------LGVTCIHIQNGMNLQ 170 (187) T ss_dssp H-HHHHHHHT--------TTCEEEECSSSCCHH T ss_pred H-HHHHHHHH--------CCCEEEEECCCCCHH T ss_conf 8-78999998--------699899969999989 No 48 >1u02_A Trehalose-6-phosphate phosphatase related protein; structural genomics, PSI, protein structure initiative; 1.92A {Thermoplasma acidophilum} SCOP: c.108.1.15 Probab=21.32 E-value=36 Score=13.52 Aligned_cols=10 Identities=10% Similarity=0.215 Sum_probs=7.1 Q ss_pred CEEEEECHHH Q ss_conf 8099962878 Q gi|254780180|r 263 GRIVSVGTTS 272 (360) Q Consensus 263 ~rIiAVGTT~ 272 (360) ..++|+|=.. T Consensus 172 ~~v~~~GD~~ 181 (239) T 1u02_A 172 RPAIIAGDDA 181 (239) T ss_dssp SCEEEEESSH T ss_pred CCEEEECCCC T ss_conf 6769936987 No 49 >1o1x_A Ribose-5-phosphate isomerase RPIB; TM1080, structural genomics, JCSG, PSI, protein structure initiative; 1.90A {Thermotoga maritima} SCOP: c.121.1.1 Probab=20.71 E-value=27 Score=14.41 Aligned_cols=65 Identities=20% Similarity=0.222 Sum_probs=42.0 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHEEECHHHHHHHHHHHHCCCEEEE-E Q ss_conf 400555688789999999997215530378731656657887410135667700077859999999987537980999-6 Q gi|254780180|r 190 SVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGRIVS-V 268 (360) Q Consensus 190 SVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~~g~rIiA-V 268 (360) ++++--||..+-++|.+.|+++|+++. .+| |+..-.+ .|-.+..+.++.+.+-+. .|-|. . T Consensus 16 ~igsDHaG~~lK~~l~~~L~~~g~ev~----D~G--~~~~~~~----------DYpd~a~~va~~V~~~~~--~~GIliC 77 (155) T 1o1x_A 16 AIASDHAAFELKEKVKNYLLGKGIEVE----DHG--TYSEESV----------DYPDYAKKVVQSILSNEA--DFGILLC 77 (155) T ss_dssp EEEECSTTHHHHHHHHHHHHHTTCEEE----ECC--CCSSSCC----------CHHHHHHHHHHHHHTTSC--SEEEEEE T ss_pred EEEECCHHHHHHHHHHHHHHHCCCEEE----ECC--CCCCCCC----------CCHHHHHHHHHHHHCCCC--CEEEEEC T ss_conf 997487179999999999998799899----789--9987777----------831789999999734776--3479964 Q ss_pred CHHH Q ss_conf 2878 Q gi|254780180|r 269 GTTS 272 (360) Q Consensus 269 GTT~ 272 (360) ||=. T Consensus 78 GtG~ 81 (155) T 1o1x_A 78 GTGL 81 (155) T ss_dssp SSSH T ss_pred CCCH T ss_conf 8987 No 50 >1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A Probab=20.26 E-value=38 Score=13.37 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=13.4 Q ss_pred CHHHHHHHHHHHHCCCEEEEE Q ss_conf 599999999875379809996 Q gi|254780180|r 248 DAPTAQALNSVKSRGGRIVSV 268 (360) Q Consensus 248 ~~~~~~~I~~ak~~g~rIiAV 268 (360) ++..+.+++.||+.|-++|++ T Consensus 126 S~nii~a~~~Ak~~g~~~i~l 146 (199) T 1x92_A 126 SANVIQAIQAAHDREMLVVAL 146 (199) T ss_dssp CHHHHHHHHHHHHTTCEEEEE T ss_pred CCCHHHHHHHHHHCCCEEEEE T ss_conf 945789999999869969999 No 51 >1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1 Probab=20.21 E-value=13 Score=16.59 Aligned_cols=24 Identities=21% Similarity=0.537 Sum_probs=12.3 Q ss_pred EECCCCCCCHH-HHHHCCCCCCCCC Q ss_conf 81124866101-1221156436985 Q gi|254780180|r 90 LHMRVSPNSWS-VYARPSKVIKKGD 113 (360) Q Consensus 90 l~~~~~~~~w~-~l~kp~kklk~G~ 113 (360) +++-+.+..|. |.+.|++|...|. T Consensus 51 ~lr~lgp~pw~~aYvqPsrRP~DgR 75 (298) T 1j5w_A 51 FFGSLRKGPWKVAYVQPSRRPTDGR 75 (298) T ss_dssp HTGGGCSSCEEEEEEEEEECCC--- T ss_pred HHHHCCCCCCEEEEECCCCCCCCCC T ss_conf 9863198763266424677999887 No 52 >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer, structural genomics; 2.80A {Thermus thermophilus HB8} Probab=20.15 E-value=35 Score=13.56 Aligned_cols=57 Identities=26% Similarity=0.270 Sum_probs=38.4 Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHH Q ss_conf 16566578874101356677000778599999999875379809996287899899998 Q gi|254780180|r 222 VGAGTFMPVKVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETAT 280 (360) Q Consensus 222 VG~GTF~Pi~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~ 280 (360) |-+-|++|+.-.+..+..-+.+.--. ...++.|....+.|++| =|||+++..-|-.. T Consensus 404 v~IPtn~p~~R~d~~d~v~~t~~~k~-~Ai~~ei~~~~~~grPV-LvgT~sIe~Se~ls 460 (997) T 2ipc_A 404 VVVPTNRPVIRKDFPDVVYRTEKGKF-YAVVEEIAEKYERGQPV-LVGTISIEKSERLS 460 (997) T ss_dssp EECCCSSCCCCEEEEEEEESSHHHHH-HHHHHHHHHHHHHTCCE-EEECSSHHHHHHHH T ss_pred EECCCCCCCCEEECCCEEECCHHHHH-HHHHHHHHHHHHCCCCE-EEEECCHHHHHHHH T ss_conf 96168887620327997887899999-99999999999749988-99758558889999 Done!