Query gi|254780180|ref|YP_003064593.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 360
No_of_seqs 165 out of 1731
Neff 6.3
Searched_HMMs 13730
Date Mon May 23 06:13:33 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780180.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wdia_ e.53.1.1 (A:) Queuosin 100.0 0 0 1021.3 24.4 340 2-357 2-344 (344)
2 d1vkya_ e.53.1.1 (A:) Queuosin 100.0 0 0 1014.5 25.3 332 4-357 1-332 (332)
3 d1jr7a_ b.82.2.3 (A:) Gab prot 89.2 0.14 1E-05 29.1 3.2 11 348-358 263-273 (311)
4 d1nx4a_ b.82.2.8 (A:) Carbapen 77.2 0.96 7E-05 23.1 3.2 12 333-344 217-228 (271)
5 d1jr2a_ c.113.1.1 (A:) Uroporp 62.4 4.2 0.00031 18.5 3.9 124 147-279 100-235 (260)
6 d1y0za_ b.82.2.8 (A:) Clavamin 57.8 4.2 0.00031 18.5 3.2 27 332-358 278-305 (327)
7 d1r1ma_ d.79.7.1 (A:) Outer me 51.4 3.3 0.00024 19.2 1.8 68 202-271 70-139 (140)
8 d1otja_ b.82.2.5 (A:) Taurine/ 50.7 6.2 0.00045 17.3 3.1 47 18-68 7-53 (281)
9 d1oiha_ b.82.2.5 (A:) Putative 49.1 6.8 0.0005 17.0 3.1 23 41-63 25-47 (288)
10 d2gy9b1 c.23.15.1 (B:8-225) Ri 47.7 6.3 0.00046 17.2 2.7 60 250-322 44-105 (218)
11 d1w0ma_ c.1.1.1 (A:) Triosepho 39.2 10 0.00074 15.7 2.7 68 181-278 62-130 (226)
12 d1a3xa1 b.58.1.1 (A:88-188) Py 38.2 11 0.00079 15.5 4.1 53 46-118 43-95 (101)
13 d1u83a_ c.1.27.1 (A:) (2r)-pho 36.4 12 0.00084 15.3 3.1 27 5-36 1-27 (249)
14 d1pkla1 b.58.1.1 (A:88-186) Py 34.9 12 0.00089 15.2 3.8 21 46-66 41-61 (99)
15 d2basa1 c.1.33.1 (A:2-262) Hyp 32.6 13 0.00095 15.0 2.4 82 201-282 134-222 (261)
16 d1tk9a_ c.80.1.3 (A:) Phosphoh 28.7 15 0.0011 14.5 3.2 22 248-269 123-144 (188)
17 d1ji0a_ c.37.1.12 (A:) Branche 27.7 10 0.00075 15.7 1.2 55 193-272 165-224 (240)
18 d1dl5a2 d.197.1.1 (A:214-317) 27.5 14 0.001 14.7 1.9 31 202-232 71-102 (104)
19 d1x92a_ c.80.1.3 (A:) Phosphoh 26.9 16 0.0012 14.3 3.2 23 248-270 123-146 (194)
20 d2g50a1 b.58.1.1 (A:116-217) P 25.9 17 0.0012 14.1 3.6 21 46-66 45-65 (102)
21 d1j5wa_ d.104.1.1 (A:) Glycyl- 21.7 8.2 0.0006 16.4 -0.2 13 152-164 140-152 (281)
22 d1e4mm_ c.1.8.4 (M:) Plant bet 21.2 10 0.00073 15.8 0.1 22 298-319 468-489 (499)
23 d1p4da_ d.89.1.5 (A:) F factor 21.1 9.7 0.00071 15.9 0.0 27 192-218 192-218 (307)
24 d1xnea_ b.122.1.6 (A:) Hypothe 21.0 21 0.0015 13.5 3.6 66 106-192 32-102 (113)
25 d1olta_ c.1.28.2 (A:) Oxygen-i 20.9 17 0.0013 14.1 1.3 74 197-281 145-228 (441)
26 d1vjra_ c.108.1.14 (A:) Hypoth 20.8 21 0.0015 13.4 4.6 21 260-280 200-220 (261)
27 d1o1xa_ c.121.1.1 (A:) Putativ 20.3 16 0.0012 14.3 1.0 65 190-272 6-71 (145)
28 d1jida_ d.201.1.1 (A:) SRP19 { 20.2 22 0.0016 13.4 3.2 36 174-214 5-55 (114)
29 d1wd7a_ c.113.1.1 (A:) Probabl 20.0 22 0.0016 13.3 4.6 119 147-279 91-225 (254)
No 1
>d1wdia_ e.53.1.1 (A:) Queuosine biosynthesis protein queA {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=0 Score=1021.26 Aligned_cols=340 Identities=44% Similarity=0.677 Sum_probs=318.5
Q ss_pred CCCCCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCCC
Q ss_conf 86335888897786169987812031356637888753153101434787269887999947956888998764046777
Q gi|254780180|r 2 MVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHINR 81 (360)
Q Consensus 2 ~lsdfDy~LP~elIAq~P~~~Rd~SRLLV~~r~~~~~~~i~h~~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~~ 81 (360)
-||||||+||++||||+|+++||+|||||++++++. +|+|+.|+||++||+||||||||||||+||||+|+| .
T Consensus 2 ~LsdfDy~LP~elIAq~P~~~Rd~SRLLVl~r~~~~--~I~h~~F~dl~~~L~~gDlLV~NnTkVipARL~g~k-----~ 74 (344)
T d1wdia_ 2 GLEAYDYHLPPEQIAQEGVEPRDMARLMVVYREGPF--RVAHKRVRDLPEFLRPGDVLVFNESKVIPARLLARK-----P 74 (344)
T ss_dssp GGGGGCCCCCGGGBCSSCCSSGGGSEEEEECSSSSC--CEEEEEGGGHHHHCCTTCEEEEEEEEECCEEEEEEC-----T
T ss_pred CHHHCCCCCCHHHHCCCCCCCCCCCEEEEEECCCCC--EEEECCHHHHHHHCCCCCEEEEECCEEEEEEEEEEE-----C
T ss_conf 734549997959976899999621128999889998--576332623676479998999989989778999781-----6
Q ss_pred CCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCCCCC---CCEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 765058998112486610112211564369857997057887---40699996035577249997267863000254420
Q gi|254780180|r 82 REKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQ---SRLEATVIDKWNTGEILLVFSISGIELERQISLVG 158 (360)
Q Consensus 82 ~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~~~~~---~~l~~~vi~~~~~g~~~i~f~~~~~~~~~~L~~~G 158 (360)
+|++||+++++..+++.|.|++||+||+++|+++.+.+.... ..+.++++.+.+.+.++++|+. ++.++|+++|
T Consensus 75 tggkvEilll~~~~~~~w~al~kp~kk~k~G~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~l~~~G 151 (344)
T d1wdia_ 75 TGGKVEILLVRERSPGLWEALLGPARKAPPGTRLLLLSPKDLAPVPGLQAEVVAVEEDGVRLLRFQG---DLVAHLEEVG 151 (344)
T ss_dssp TSCEEEEEECBCC------CCBCCCSCCCSCEEEEECTTTTSCEEEEEEEECCCSSCC-------------CCEEESCCC
T ss_pred CCCEEEEEEECCCCCCEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCCEEEEECC---CHHHHHHHHC
T ss_conf 8974999983124897089995336778999889953764322236736999998068847997222---0677788755
Q ss_pred CCCCCHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 35785222123456521143310134567574005556887899999999972155303787316566578874101356
Q gi|254780180|r 159 TIPLPPYIARKRPIDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDH 238 (360)
Q Consensus 159 ~iPLPPYI~r~r~~~~~D~~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h 238 (360)
+|||||||+|+ .|.+|||||||+++|||||||||||||++||++|++|||++++||||||+|||+||++ ++.+|
T Consensus 152 ~~PLPPYI~r~-----~d~~rYQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~vTLHVG~GTF~Pv~~-~~~~H 225 (344)
T d1wdia_ 152 EVPLPPYIKAK-----IPMERYQTVYARRPGSVAAPTAGLHFTPELLERLREMGVELRFLTLHVGPGTFRPVKG-DPEKH 225 (344)
T ss_dssp SCC------------------------------CCCCGGGGCCHHHHHHHHHTTCEEEEEEEEESGGGCCC---------
T ss_pred CCCCCHHHHCC-----HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEEEECCCCCCCCCC-CCCCC
T ss_conf 79988023112-----2676566564168987516645577899999999974061567999623443355334-32357
Q ss_pred CCCCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCHH
Q ss_conf 67700077859999999987537980999628789989999852898468887223665740961143125527755457
Q gi|254780180|r 239 IMHSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPKS 318 (360)
Q Consensus 239 ~mH~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~~~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~S 318 (360)
+||+|||+||++|+++||+||++|+|||||||||||||||++..+|.+++++|||||||+|||+|++||+||||||+|||
T Consensus 226 ~mH~E~~~i~~~t~~~i~~ak~~g~rIiAVGTT~~RaLEs~~~~~~~~~~~~g~T~lfI~Pg~~f~~vd~LlTNFHlP~S 305 (344)
T d1wdia_ 226 EMHAEPYAIPEEVAEAVNRAKAEGRRVVAVGTTVVRALESAYREGVGVVAGEGETRLFIRPPYTFKVVDALFTNFHLPRS 305 (344)
T ss_dssp -CCCEEEEECHHHHHHHHHHHHTTCCEEEESHHHHHHHHHTEETTTEECCEEEEECCCCCSSCCCSSCSEEEEECCCTTC
T ss_pred CCCCEEEEECHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCEECEEEECCCCCCC
T ss_conf 88874999839999999999973995899957899999999970898577887568697899977481862446847802
Q ss_pred HHHHHHHHHHCHHHHHHHHHHHHHCCCEEECCCCHHHCC
Q ss_conf 899999987198999999999998698261101022233
Q gi|254780180|r 319 TLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLF 357 (360)
Q Consensus 319 tll~Lv~Af~G~~~~~~~Y~~Ai~~~yrF~syGDamLi~ 357 (360)
|||||||||+|+++|+++|++||+++||||||||||||+
T Consensus 306 tll~Lv~af~g~~~~~~~Y~~Ai~~~YrF~SyGDamlil 344 (344)
T d1wdia_ 306 TLLMLVAAFLGRERTLEAYRLAVAEGYRFYSLGDAMLIL 344 (344)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHTTCCBSTTSCEEEEC
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHCCCCEECCCHHHEEC
T ss_conf 999999995795999999999998799333303321109
No 2
>d1vkya_ e.53.1.1 (A:) Queuosine biosynthesis protein queA {Thermotoga maritima [TaxId: 2336]}
Probab=100.00 E-value=0 Score=1014.50 Aligned_cols=332 Identities=42% Similarity=0.683 Sum_probs=314.4
Q ss_pred CCCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCCCCC
Q ss_conf 33588889778616998781203135663788875315310143478726988799994795688899876404677776
Q gi|254780180|r 4 KEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHINRRE 83 (360)
Q Consensus 4 sdfDy~LP~elIAq~P~~~Rd~SRLLV~~r~~~~~~~i~h~~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~~~g 83 (360)
|||||+||++||||+|+++||+|||||++++++ .|+|+.|+||++||+||||||||||||+||||+|+| .+|
T Consensus 1 SdfDy~LP~elIAq~P~~~Rd~SRLLVl~r~~~---~i~h~~F~dl~~~L~~gDlLV~NnTkVipARL~g~k-----~tg 72 (332)
T d1vkya_ 1 SEFDYELPPELIAQEPVEPRDASRLMVLHRKTQ---RIEHRIFREIIEYLEPGDLLVLNVSKVIPARLYARK-----KTG 72 (332)
T ss_dssp CTTCCCCCGGGBCSSCCSSGGGSEEEEEETTTT---EEEEEEGGGGGGGCCTTCEEEEEEEECCSCEEEEBC--------
T ss_pred CCCCCCCCHHHHCCCCCCCCCCCEEEEEECCCC---CEEEEEHHHHHHHCCCCCEEEEECCEEEEEEEEEEC-----CCC
T ss_conf 997888993896689999965144888988999---178766765686479998999979989888999982-----456
Q ss_pred CEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 50589981124866101122115643698579970578874069999603557724999726786300025442035785
Q gi|254780180|r 84 KEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQSRLEATVIDKWNTGEILLVFSISGIELERQISLVGTIPLP 163 (360)
Q Consensus 84 ~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~~~~~~~l~~~vi~~~~~g~~~i~f~~~~~~~~~~L~~~G~iPLP 163 (360)
++||++++++.+++.|.|++||+||+|+|+++.+.+ .+.++|+++...+.+.+.|+.+ .+++|+++|+||||
T Consensus 73 gkvEilll~~~~~~~w~~likp~kk~k~g~~l~~~~-----~~~~~v~~~~~~~~~~~~~~~~---~~~~l~~~G~~PLP 144 (332)
T d1vkya_ 73 ASIEILLIERLEEGIWKCLVRPGQKVKKGTELVIDE-----DLSAVCLGRGEDGTRILKFQPQ---DDRLIFEKGRTPLP 144 (332)
T ss_dssp CCEEEEEEEEEETTEEEEEEESCTTCCTTCEEEEET-----TEEEEEEEECTTSCEEEEEESC---CHHHHHHHC-----
T ss_pred CCEEEEEEEECCCCEEEEEECCCCCCCCCEEEEECC-----CCEEEEEEECCCCEEEEECCCC---CHHHHHHCCCCCCC
T ss_conf 737688774047846999964666774332887437-----7306999851551267622675---36789866898889
Q ss_pred HHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 22212345652114331013456757400555688789999999997215530378731656657887410135667700
Q gi|254780180|r 164 PYIARKRPIDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSE 243 (360)
Q Consensus 164 PYI~r~r~~~~~D~~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E 243 (360)
|||+| + .|.+|||||||+++|||||||||||||++||++|++|||++++||||||+|||+||++|+|++|+||+|
T Consensus 145 PYI~r--~---~d~~rYQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kgv~~~~iTLHVG~GTF~Pv~~e~i~~h~mh~E 219 (332)
T d1vkya_ 145 PYIKN--E---VPLERYQTVYAKEEGSVAAPTAGLHFTPELIEKLKKKGVQFAEVVLHVGIGTFRPVKVEEVEKHKMHEE 219 (332)
T ss_dssp -------------------------------CGGGGCCHHHHHHHHHHTCEEEEEEEEC------------------CCC
T ss_pred CHHCC--C---CHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 31125--4---169999988741278603776667678999999998399457899985244466666442245677510
Q ss_pred HEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCHHHHHHH
Q ss_conf 07785999999998753798099962878998999985289846888722366574096114312552775545789999
Q gi|254780180|r 244 IGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPKSTLLML 323 (360)
Q Consensus 244 ~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~~~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~Stll~L 323 (360)
||+||++|+++||+||++|+|||||||||||||||++. +|.+++++|||||||+|||+|++||+||||||+||||||||
T Consensus 220 ~~~I~~~t~~~i~~ak~~g~rIiAVGTT~~R~LEs~~~-~~~~~~~~G~T~lfI~Pgy~f~~vd~LiTNFHlPkStll~L 298 (332)
T d1vkya_ 220 FYQVPKETVRKLRETRERGNRIVAVGTTTVRTLETIAR-LPEQEEYVGKTDLFIYPPFEFKLVDALVTNFHLPRSTLLML 298 (332)
T ss_dssp EEEECHHHHHHHHHHHHHTCCEEEESHHHHHHHHHHTT-SCCCSSEEECCCCCCCSSCCCSSCSEEEEECCCTTCHHHHH
T ss_pred EEECCHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHH-HCCCCCCCCCCCEEECCCCCCEEECEEEECCCCCCCHHHHH
T ss_conf 02168999999999997299589984689999999997-42356567860469779998618285123684881289999
Q ss_pred HHHHHCHHHHHHHHHHHHHCCCEEECCCCHHHCC
Q ss_conf 9987198999999999998698261101022233
Q gi|254780180|r 324 VSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLF 357 (360)
Q Consensus 324 v~Af~G~~~~~~~Y~~Ai~~~yrF~syGDamLi~ 357 (360)
||||+|+++++++|++||+++||||||||||||+
T Consensus 299 vsAf~g~~~~~~~Y~~Ai~~~yrF~syGDamlil 332 (332)
T d1vkya_ 299 VAAFAGKDFVMEAYREAVKRRYRFFSFGDAMLIL 332 (332)
T ss_dssp HHHHHCHHHHHHHHHHHHHTTCCBSTTSCEEEEC
T ss_pred HHHHCCHHHHHHHHHHHHHCCCCEECCCHHHEEC
T ss_conf 9985796999999999998799523314121119
No 3
>d1jr7a_ b.82.2.3 (A:) Gab protein (hypothetical protein YgaT) {Escherichia coli [TaxId: 562]}
Probab=89.24 E-value=0.14 Score=29.09 Aligned_cols=11 Identities=18% Similarity=0.166 Sum_probs=4.9
Q ss_pred ECCCCHHHCCC
Q ss_conf 11010222336
Q gi|254780180|r 348 YSYGDTSLLFQ 358 (360)
Q Consensus 348 ~syGDamLi~~ 358 (360)
+.-||+++.-+
T Consensus 263 L~pGd~lI~DN 273 (311)
T d1jr7a_ 263 VPVGKFLLINN 273 (311)
T ss_dssp CCTTCEEEEET
T ss_pred CCCCCEEEEEC
T ss_conf 69999999968
No 4
>d1nx4a_ b.82.2.8 (A:) Carbapenem synthase, CarC {Erwinia carotovora [TaxId: 554]}
Probab=77.17 E-value=0.96 Score=23.12 Aligned_cols=12 Identities=0% Similarity=-0.158 Sum_probs=4.3
Q ss_pred HHHHHHHHHHCC
Q ss_conf 999999999869
Q gi|254780180|r 333 TKKMYQHAISHA 344 (360)
Q Consensus 333 ~~~~Y~~Ai~~~ 344 (360)
+..+++++...+
T Consensus 217 l~~l~~~~~~~~ 228 (271)
T d1nx4a_ 217 FQELGAFLKQPR 228 (271)
T ss_dssp HHHHHHHHTSTT
T ss_pred HHHHHHHHCCCC
T ss_conf 999999875988
No 5
>d1jr2a_ c.113.1.1 (A:) Uroporphyrinogen III synthase (U3S, HemD) {Human (Homo sapiens) [TaxId: 9606]}
Probab=62.41 E-value=4.2 Score=18.48 Aligned_cols=124 Identities=15% Similarity=0.079 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 86300025442035785222123456521143310134567574005556887899999999972155303787316566
Q gi|254780180|r 147 GIELERQISLVGTIPLPPYIARKRPIDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGT 226 (360)
Q Consensus 147 ~~~~~~~L~~~G~iPLPPYI~r~r~~~~~D~~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GT 226 (360)
|..-.+.|.++|--+..|- .. ...+....-.......+.+--|++ -+=.+.|-+.|++.|+++..+.+- -|
T Consensus 100 G~~Ta~~l~~~G~~~~~~~---~~--~s~~l~~~~~~~~~~~~~il~~~g-~~~~~~L~~~L~~~g~~v~~~~~Y---~~ 170 (260)
T d1jr2a_ 100 GNATASLVSKIGLDTEGET---CG--NAEKLAEYICSRESSALPLLFPCG-NLKREILPKALKDKGIAMESITVY---QT 170 (260)
T ss_dssp SHHHHHHHHHTTCCCSCCS---CS--SHHHHHHHHHTSCCCSSCEEEEES-CGGGCCHHHHHHTTTCCEEEEECE---EE
T ss_pred CHHHHHHHHHCCCCCCCCC---CC--CHHHHHHHHHHHCCCCCEEEEEEC-CCCCHHHHHHHHHCCCCCEEEEEE---EE
T ss_conf 5799999998599752056---53--078889987640256754999625-553067888888549850699864---45
Q ss_pred CCCC-CCCCCC----CCCCCCHHEEECHHHHHHHHHH-------HHCCCEEEEECHHHHHHHHHH
Q ss_conf 5788-741013----5667700077859999999987-------537980999628789989999
Q gi|254780180|r 227 FMPV-KVEDTD----DHIMHSEIGFIDAPTAQALNSV-------KSRGGRIVSVGTTSLRLLETA 279 (360)
Q Consensus 227 F~Pi-~~~~i~----~h~mH~E~~~i~~~~~~~I~~a-------k~~g~rIiAVGTT~~R~LEs~ 279 (360)
-.+- ..+.+. +...-.=-.+-|..+++...+. ...+-+|+|+|.++..+|+..
T Consensus 171 ~~~~~~~~~~~~~l~~~~~~d~i~f~S~s~v~~~~~~~~~~~~~~~~~~~i~~IG~~ta~~l~~~ 235 (260)
T d1jr2a_ 171 VAHPGIQGNLNSYYSQQGVPASITFFSPSGLTYSLKHIQELSGDNIDQIKFAAIGPTTARALAAQ 235 (260)
T ss_dssp EECTTHHHHHHHHHHHHCSCSEEEESSHHHHHHHHHHHHHHHGGGGGGSEEEESSHHHHHHHHHT
T ss_pred ECCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHC
T ss_conf 44645368899998752476178626989999999999873130325838999889999999976
No 6
>d1y0za_ b.82.2.8 (A:) Clavaminate synthase-like protein At3g21360 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=57.81 E-value=4.2 Score=18.48 Aligned_cols=27 Identities=11% Similarity=0.001 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHCCCEEE-CCCCHHHCCC
Q ss_conf 99999999998698261-1010222336
Q gi|254780180|r 332 ETKKMYQHAISHAYRFY-SYGDTSLLFQ 358 (360)
Q Consensus 332 ~~~~~Y~~Ai~~~yrF~-syGDamLi~~ 358 (360)
.+..+.+.+-+..|+|- .=||-+++-+
T Consensus 278 ll~~i~~~~~~~~~~~~Wq~GDlvi~DN 305 (327)
T d1y0za_ 278 IVHDCLRILEEECVAVPWQRGDVLLIDN 305 (327)
T ss_dssp HHHHHHHHHHHHCBCCCCCTTCEEEEET
T ss_pred HHHHHHHHCCCEEEEEECCCCCEEEEEC
T ss_conf 9999987271469980438899999965
No 7
>d1r1ma_ d.79.7.1 (A:) Outer membrane protein class 4, RmpM, C-terminal domain {Neisseria meningitidis [TaxId: 487]}
Probab=51.44 E-value=3.3 Score=19.21 Aligned_cols=68 Identities=18% Similarity=0.148 Sum_probs=42.5
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCC-CCCCHHEEECHHHHHHHHHHHHCCCEE-EEECHH
Q ss_conf 9999999972155303787316566578874101356-677000778599999999875379809-996287
Q gi|254780180|r 202 SNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDH-IMHSEIGFIDAPTAQALNSVKSRGGRI-VSVGTT 271 (360)
Q Consensus 202 ~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h-~mH~E~~~i~~~~~~~I~~ak~~g~rI-iAVGTT 271 (360)
..+.+-|.++|+.-..|+ -+|+|-.+|+-...-+.. ......... ...-..+..+.+.++|| |.|.++
T Consensus 70 ~~V~~~L~~~Gi~~~ri~-~~g~Ge~~P~~~n~~~~~~~~~~~~~~~-~~nr~~~i~~~~~nRRVEi~v~~~ 139 (140)
T d1r1ma_ 70 YVVANNLVSNGVPVSRIS-AVGLGESQAQMTQVCEAEVAKLGAKVSK-AKKREALIACIEPDRRVDVKIRSI 139 (140)
T ss_dssp HHHHHHHHHTTCCGGGEE-EEECTTTTCCCHHHHHHHHHTCCSSCCS-SHHHHHHHHHTGGGSEEEEEEEEE
T ss_pred HHHHHHHHHCCCCCCEEE-EEEEECCCCCCCCCCHHHHHHCCCHHHH-HHHHHHHHHCCCCCCCEEEEEEEC
T ss_conf 999999997599937599-9997257877889698898530220123-320255550468998589999825
No 8
>d1otja_ b.82.2.5 (A:) Taurine/alpha-ketoglutarate dioxygenase TauD {Escherichia coli [TaxId: 562]}
Probab=50.66 E-value=6.2 Score=17.27 Aligned_cols=47 Identities=13% Similarity=0.159 Sum_probs=27.2
Q ss_pred CCCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECCCEEE
Q ss_conf 998781203135663788875315310143478726988799994795688
Q gi|254780180|r 18 RPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVIT 68 (360)
Q Consensus 18 ~P~~~Rd~SRLLV~~r~~~~~~~i~h~~F~dl~~~L~~gDLLV~NnTKVip 68 (360)
.|+.+.=.+...=+|-+ ..+.+..+..|-+.|...-+|||.|-..=+
T Consensus 7 ~pl~~~~Ga~I~gvDl~----~~l~~~~~~~i~~~l~~~gvlvfr~q~ls~ 53 (281)
T d1otja_ 7 TPLGPYIGAQISGADLT----RPLSDNQFEQLYHAVLRHQVVFLRDQAITP 53 (281)
T ss_dssp EESSSSSCEEEESCCSS----SCCCHHHHHHHHHHHHHHSEEEECSCCCCH
T ss_pred EECCCCEEEEEECCCCC----CCCCHHHHHHHHHHHHHCCEEEECCCCCCH
T ss_conf 97889647999896669----869999999999999977999989999999
No 9
>d1oiha_ b.82.2.5 (A:) Putative alkylsulfatase AtsK {Pseudomonas putida [TaxId: 303]}
Probab=49.05 E-value=6.8 Score=16.98 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=16.2
Q ss_pred EEEEEHHHHHHHCCCCCEEEEEC
Q ss_conf 53101434787269887999947
Q gi|254780180|r 41 ISDHLVSDLPAFLNSNDAIVFNN 63 (360)
Q Consensus 41 i~h~~F~dl~~~L~~gDLLV~Nn 63 (360)
+.+..+..|-+.|...-+|||-|
T Consensus 25 l~~~~~~~i~~al~~~~vlvfr~ 47 (288)
T d1oiha_ 25 LDAATVEAIQAALVRHKVIFFRG 47 (288)
T ss_dssp CCHHHHHHHHHHHHHHSEEEECC
T ss_pred CCHHHHHHHHHHHHHCCEEEECC
T ss_conf 99999999999999789999889
No 10
>d2gy9b1 c.23.15.1 (B:8-225) Ribosomal protein S2 {Escherichia coli [TaxId: 562]}
Probab=47.65 E-value=6.3 Score=17.25 Aligned_cols=60 Identities=20% Similarity=0.236 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHCCCEEEEECHH--HHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCHHHHHH
Q ss_conf 9999999875379809996287--899899998528984688872236657409611431255277554578999
Q gi|254780180|r 250 PTAQALNSVKSRGGRIVSVGTT--SLRLLETATTEDGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPKSTLLM 322 (360)
Q Consensus 250 ~~~~~I~~ak~~g~rIiAVGTT--~~R~LEs~~~~~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~Stll~ 322 (360)
+++.-|...-.+||.|+-|||. .-..++.++...+. |--..+..-|++|||..=+.+.-.
T Consensus 44 ~A~~~l~~~~~~~g~iLfVgTk~~~~~~i~~~a~~~~~-------------~yvn~rWlgG~LTN~~~i~~~i~~ 105 (218)
T d2gy9b1 44 EALAELNKIASRKGKILFVGTKRAASEAVKDAALSCDQ-------------FFVNHRWLGGMLTNWKTVRQSIKR 105 (218)
T ss_dssp HHHHHHHHHHTTTCCEEEECCSTTSHHHHHHHHHHTTC-------------EEECSCCCTTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCC-------------CEECCEEECCCCCCHHHHHHHHHH
T ss_conf 99999988640898699983563344999999986198-------------230324656813444342347788
No 11
>d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]}
Probab=39.16 E-value=10 Score=15.73 Aligned_cols=68 Identities=22% Similarity=0.172 Sum_probs=39.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHEEECHHHHHHHHHHHH
Q ss_conf 01345675740055568878999999999721553037873165665788741013566770007785999999998753
Q gi|254780180|r 181 QTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGFIDAPTAQALNSVKS 260 (360)
Q Consensus 181 QTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~ 260 (360)
|.++....|+ -|. .-+.++ |++-|++++-+ | |+|.=..-.++.++++++++
T Consensus 62 Qn~~~~~~ga---~TG--~is~~~---l~~~g~~~vii----g-----------------HsErR~~~~e~~~~~~~~~~ 112 (226)
T d1w0ma_ 62 QGADVEAGGA---HTA--HVSLEN---IKEAGGSGVIL----N-----------------HSEAPLKLNDLARLVAKAKS 112 (226)
T ss_dssp SCCSBSSCSS---CTT--CCBHHH---HHHHTCCEEEE----C-----------------CTTSCCBHHHHHHHHHHHHH
T ss_pred CCCCCCCCCC---CCE--EEEHHH---HCCCCCCEEEE----E-----------------CHHHHHHCCCHHHHHHHHHH
T ss_conf 6455202655---210--412766---32444425885----0-----------------41223302016899999998
Q ss_pred CCCE-EEEECHHHHHHHHH
Q ss_conf 7980-99962878998999
Q gi|254780180|r 261 RGGR-IVSVGTTSLRLLET 278 (360)
Q Consensus 261 ~g~r-IiAVGTT~~R~LEs 278 (360)
.|=. |++||+|. .+.+.
T Consensus 113 ~gl~~ivcvge~~-~~~~~ 130 (226)
T d1w0ma_ 113 LGLDVVVCAPDPR-TSLAA 130 (226)
T ss_dssp TTCEEEEEESSHH-HHHHH
T ss_pred CCCEEEEECCCHH-HHHHH
T ss_conf 6998999558417-76641
No 12
>d1a3xa1 b.58.1.1 (A:88-188) Pyruvate kinase (PK) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=38.17 E-value=11 Score=15.52 Aligned_cols=53 Identities=11% Similarity=0.081 Sum_probs=27.4
Q ss_pred HHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCCCCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEEC
Q ss_conf 4347872698879999479568889987640467777650589981124866101122115643698579970
Q gi|254780180|r 46 VSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFF 118 (360)
Q Consensus 46 F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~~~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~ 118 (360)
+.+|.+.+++||.+.++|-++ ++.+.+..++....|.+..++.++...-+.|+
T Consensus 43 y~~l~~~v~~G~~IliDDG~I--------------------~l~V~e~~~~~~v~~~V~~gG~L~s~KgVNlP 95 (101)
T d1a3xa1 43 YKNITKVISAGRIIYVDDGVL--------------------SFQVLEVVDDKTLKVKALNAGKICSHKGVNLP 95 (101)
T ss_dssp CTTHHHHCCTTCEEEETTTTE--------------------EEEECCCCTTTEEEEEESSCCCCCSSCBEECT
T ss_pred CHHHHHHCCCCCEEEECCCCE--------------------EEEEEEECCCCEEEEEEEECCEEECCCCEECC
T ss_conf 077254335999999828841--------------------89999963899899999889695099848899
No 13
>d1u83a_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Bacillus subtilis [TaxId: 1423]}
Probab=36.44 E-value=12 Score=15.34 Aligned_cols=27 Identities=22% Similarity=0.594 Sum_probs=21.9
Q ss_pred CCCCCCCHHHHCCCCCCCCCCCEEEEECCCCC
Q ss_conf 35888897786169987812031356637888
Q gi|254780180|r 5 EFDFDLPPSRIALRPVFPRDSARLMVVHPNLS 36 (360)
Q Consensus 5 dfDy~LP~elIAq~P~~~Rd~SRLLV~~r~~~ 36 (360)
||+.+||+ +|..||...--||.|+.-+
T Consensus 1 ~f~l~lp~-----R~~KPR~~GlT~v~D~Gl~ 27 (249)
T d1u83a_ 1 DFSLELPV-----RTNKPRETGQSILIDNGYP 27 (249)
T ss_dssp CCCCCCCC-----CCCSSCSSSCEEEEESSCC
T ss_pred CCCCCCCC-----CCCCCCCCCCEEEECCCCC
T ss_conf 98778998-----9999854685699519989
No 14
>d1pkla1 b.58.1.1 (A:88-186) Pyruvate kinase (PK) {Leishmania mexicana [TaxId: 5665]}
Probab=34.94 E-value=12 Score=15.17 Aligned_cols=21 Identities=10% Similarity=0.243 Sum_probs=11.5
Q ss_pred HHHHHHHCCCCCEEEEECCCE
Q ss_conf 434787269887999947956
Q gi|254780180|r 46 VSDLPAFLNSNDAIVFNNTKV 66 (360)
Q Consensus 46 F~dl~~~L~~gDLLV~NnTKV 66 (360)
+.+|.+.+++||.+-+.|-+.
T Consensus 41 y~~l~~~vk~Gd~IlidDG~i 61 (99)
T d1pkla1 41 YQNLSKVVRPGNYIYIDDGIL 61 (99)
T ss_dssp CTTHHHHCCTTCEEEETTTTE
T ss_pred HHHHHHHHCCCCEEEECCCEE
T ss_conf 899676514687899938810
No 15
>d2basa1 c.1.33.1 (A:2-262) Hypothetical protein YkuI, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=32.55 E-value=13 Score=14.97 Aligned_cols=82 Identities=10% Similarity=-0.021 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHEE-E-----CHHHHH-HHHHHHHCCCEEEEECHHHH
Q ss_conf 9999999997215530378731656657887410135667700077-8-----599999-99987537980999628789
Q gi|254780180|r 201 TSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGF-I-----DAPTAQ-ALNSVKSRGGRIVSVGTTSL 273 (360)
Q Consensus 201 t~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~-i-----~~~~~~-~I~~ak~~g~rIiAVGTT~~ 273 (360)
..+.+++|++.|+.++-=-...|.++|..+..=.++--|+...+.. + ....++ .+.-|+..|-+|||-|=-+-
T Consensus 134 ~~~~l~~L~~~G~~lalddfG~~~~sl~~L~~l~~d~IKld~s~i~~~~~~~~~~~~l~~l~~~a~~~~~~vIaeGVE~~ 213 (261)
T d2basa1 134 LYHMLAYYRTYGIKIAVDNIGKESSNLDRIALLSPDLLKIDLQALKVSQPSPSYEHVLYSISLLARKIGAALLYEDIEAN 213 (261)
T ss_dssp HHHHHHHHHTTTCEEEEEEETTTBCCHHHHHHHCCSEEEEECTTTC----CCHHHHHHHHHHHHHHHHTCEEEEECCCSH
T ss_pred HHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCH
T ss_conf 99999987514843652477667630667765535542035110012344555699999999999986998999848819
Q ss_pred HHHHHHHHC
Q ss_conf 989999852
Q gi|254780180|r 274 RLLETATTE 282 (360)
Q Consensus 274 R~LEs~~~~ 282 (360)
..++.+..-
T Consensus 214 ~~~~~l~~l 222 (261)
T d2basa1 214 FQLQYAWRN 222 (261)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHC
T ss_conf 999999986
No 16
>d1tk9a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Campylobacter jejuni [TaxId: 197]}
Probab=28.69 E-value=15 Score=14.47 Aligned_cols=22 Identities=14% Similarity=0.108 Sum_probs=16.3
Q ss_pred CHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 5999999998753798099962
Q gi|254780180|r 248 DAPTAQALNSVKSRGGRIVSVG 269 (360)
Q Consensus 248 ~~~~~~~I~~ak~~g~rIiAVG 269 (360)
++..+.+++.||+.|-++|++-
T Consensus 123 S~nii~a~~~Ak~~g~~ti~lt 144 (188)
T d1tk9a_ 123 SPNVLEALKKAKELNMLCLGLS 144 (188)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCHHHHHHHHHHHHCCEEEEEE
T ss_conf 8126888899985115389980
No 17
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}
Probab=27.66 E-value=10 Score=15.68 Aligned_cols=55 Identities=20% Similarity=0.341 Sum_probs=36.2
Q ss_pred CCCCCCCC-----CHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHEEECHHHHHHHHHHHHCCCEEEE
Q ss_conf 55568878-----9999999997215530378731656657887410135667700077859999999987537980999
Q gi|254780180|r 193 APTAGLHF-----TSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGRIVS 267 (360)
Q Consensus 193 APTAGLHF-----t~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~~g~rIiA 267 (360)
=||+||-- -.+++.+|+++|..+..+|.+... ...+.|+ ..| -..|||++
T Consensus 165 EPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~-------~~~~~dr------v~v------------l~~G~iv~ 219 (240)
T d1ji0a_ 165 EPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALG-------ALKVAHY------GYV------------LETGQIVL 219 (240)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHH-------HHHHCSE------EEE------------EETTEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHH-------HHHHCCE------EEE------------EECCEEEE
T ss_conf 9886799999999999999999689989999588999-------9996999------999------------98999999
Q ss_pred ECHHH
Q ss_conf 62878
Q gi|254780180|r 268 VGTTS 272 (360)
Q Consensus 268 VGTT~ 272 (360)
.||+.
T Consensus 220 ~g~~~ 224 (240)
T d1ji0a_ 220 EGKAS 224 (240)
T ss_dssp EEEHH
T ss_pred ECCHH
T ss_conf 84899
No 18
>d1dl5a2 d.197.1.1 (A:214-317) Protein-L-isoaspartyl O-methyltransferase, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=27.51 E-value=14 Score=14.69 Aligned_cols=31 Identities=32% Similarity=0.527 Sum_probs=23.6
Q ss_pred HHHHHHHHHHCC-CCEEEEEECCCCCCCCCCC
Q ss_conf 999999997215-5303787316566578874
Q gi|254780180|r 202 SNLLSRLISIGI-KVYFVTLHVGAGTFMPVKV 232 (360)
Q Consensus 202 ~~ll~~L~~kGi-~~~~iTLHVG~GTF~Pi~~ 232 (360)
+.|+.++++-|- .+.++-||||+..|.-|.+
T Consensus 71 e~ll~qwe~cgyrsfe~lmlhigyna~s~isc 102 (104)
T d1dl5a2 71 ENLLTQWESCGYRSFEYLMLHVGYNAFSHISC 102 (104)
T ss_dssp HHHHHHHHHTTTCCGGGSEEEEESSSCCEEEC
T ss_pred HHHHHHHHHHCCHHHHHHHHHHCCCCEEEEEE
T ss_conf 99999988717122789998733340136662
No 19
>d1x92a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=26.94 E-value=16 Score=14.26 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=16.6
Q ss_pred CHHHHHHHHHHHHCCCEEEEE-CH
Q ss_conf 599999999875379809996-28
Q gi|254780180|r 248 DAPTAQALNSVKSRGGRIVSV-GT 270 (360)
Q Consensus 248 ~~~~~~~I~~ak~~g~rIiAV-GT 270 (360)
++....+++.||+.|-++|++ |.
T Consensus 123 S~nvi~a~~~Ak~~g~~~i~ltG~ 146 (194)
T d1x92a_ 123 SANVIQAIQAAHDREMLVVALTGR 146 (194)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEECT
T ss_pred CCHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 513579999987538469999825
No 20
>d2g50a1 b.58.1.1 (A:116-217) Pyruvate kinase (PK) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=25.89 E-value=17 Score=14.13 Aligned_cols=21 Identities=0% Similarity=0.169 Sum_probs=13.2
Q ss_pred HHHHHHHCCCCCEEEEECCCE
Q ss_conf 434787269887999947956
Q gi|254780180|r 46 VSDLPAFLNSNDAIVFNNTKV 66 (360)
Q Consensus 46 F~dl~~~L~~gDLLV~NnTKV 66 (360)
+.++.+.+++||.+.++|-++
T Consensus 45 ~~~l~~~v~~G~~IliDDG~i 65 (102)
T d2g50a1 45 YKNICKVVDVGSKVYVDDGLI 65 (102)
T ss_dssp CTTHHHHCCTTCEEEETTTTE
T ss_pred HHHHHHHCCCCCEEEECCCEE
T ss_conf 599897657999999849979
No 21
>d1j5wa_ d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermotoga maritima [TaxId: 2336]}
Probab=21.67 E-value=8.2 Score=16.41 Aligned_cols=13 Identities=23% Similarity=0.345 Sum_probs=6.6
Q ss_pred HHHHHHHCCCCCH
Q ss_conf 0254420357852
Q gi|254780180|r 152 RQISLVGTIPLPP 164 (360)
Q Consensus 152 ~~L~~~G~iPLPP 164 (360)
-+++..|-+.+-|
T Consensus 140 TYFQQvGg~~c~p 152 (281)
T d1j5wa_ 140 TYFQQIGGISLKD 152 (281)
T ss_dssp EEEEEBTTBCCSS
T ss_pred EHHHHHCCCCCCC
T ss_conf 1635636832565
No 22
>d1e4mm_ c.1.8.4 (M:) Plant beta-glucosidase (myrosinase) {White mustard (Sinapis alba) [TaxId: 3728]}
Probab=21.22 E-value=10 Score=15.79 Aligned_cols=22 Identities=14% Similarity=-0.023 Sum_probs=9.2
Q ss_pred CCCCCCEEEEEEEECCCCCHHH
Q ss_conf 7409611431255277554578
Q gi|254780180|r 298 TPGYRFRAVDILMSNFHLPKST 319 (360)
Q Consensus 298 ~Pg~~f~~vd~LiTNFH~P~St 319 (360)
.+-|.+--||-==|-=-.||.|
T Consensus 468 ~~RfGL~~VD~~~~~~R~~K~S 489 (499)
T d1e4mm_ 468 TVRFGLSYIDWNNVTDRDLKKS 489 (499)
T ss_dssp SEECCSEEEETTEEEEEEECHH
T ss_pred CCCCCEEEEECCCCCCCCCCCH
T ss_conf 6767429981899987540569
No 23
>d1p4da_ d.89.1.5 (A:) F factor TraI relaxase {Escherichia coli [TaxId: 562]}
Probab=21.11 E-value=9.7 Score=15.89 Aligned_cols=27 Identities=15% Similarity=0.225 Sum_probs=21.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCEEE
Q ss_conf 055568878999999999721553037
Q gi|254780180|r 192 AAPTAGLHFTSNLLSRLISIGIKVYFV 218 (360)
Q Consensus 192 AAPTAGLHFt~~ll~~L~~kGi~~~~i 218 (360)
.+..+|..+..+|-++|++-|.++...
T Consensus 192 ~~~~~g~~y~~~La~~l~~lG~~~~~~ 218 (307)
T d1p4da_ 192 NQIAFGRLYREKLKEQVEALGYETEVV 218 (307)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCCCEEC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 999999999999999999749764650
No 24
>d1xnea_ b.122.1.6 (A:) Hypothetical protein PF0470 {Pyrococcus furiosus [TaxId: 2261]}
Probab=21.00 E-value=21 Score=13.48 Aligned_cols=66 Identities=20% Similarity=0.238 Sum_probs=34.7
Q ss_pred CCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHCC-CCCHHHCCCCCCCCCCHHHHCCCC
Q ss_conf 5643698579970578874069999603557724999726786300025442035-785222123456521143310134
Q gi|254780180|r 106 SKVIKKGDILHFFSQDGQSRLEATVIDKWNTGEILLVFSISGIELERQISLVGTI-PLPPYIARKRPIDARDYVDYQTTY 184 (360)
Q Consensus 106 ~kklk~G~~l~~~~~~~~~~l~~~vi~~~~~g~~~i~f~~~~~~~~~~L~~~G~i-PLPPYI~r~r~~~~~D~~~YQTVy 184 (360)
-+++++||+|.|.+ .+.++|++. -+| .++.++|...|-- -+|. +. .-+.-.+.|-..|
T Consensus 32 r~~ik~GD~I~F~~-----~~~~kV~~v-------~~Y----~sF~ell~~e~l~~vlp~-~~----s~eegl~~~~~~Y 90 (113)
T d1xnea_ 32 LKDIKRGDKIIFND-----LIPAEVVEV-------KKY----ETFRQVLREEPIDKIFPD-KP----SFEKALKRFHNMY 90 (113)
T ss_dssp TTTCCTTCEEEETT-----TEEEEEEEE-------EEC----SSHHHHHHHSCHHHHCSS-CC----CHHHHHHHHTTSS
T ss_pred HHHCCCCCEEEEEE-----EEEEEEEEE-------EEC----CCHHHHHHHCCHHHHCCC-CC----CHHHHHHHHHHHC
T ss_conf 75289999999975-----079999899-------981----989999987397751899-99----8999999999777
Q ss_pred CC----CCCCCC
Q ss_conf 56----757400
Q gi|254780180|r 185 AK----IQGSVA 192 (360)
Q Consensus 185 A~----~~GSVA 192 (360)
++ +.|.||
T Consensus 91 s~E~E~k~GVvA 102 (113)
T d1xnea_ 91 PKWKEYRYGVLA 102 (113)
T ss_dssp SSSCCCCCCCEE
T ss_pred CHHHHHHCCEEE
T ss_conf 998987548899
No 25
>d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III oxidase HemN {Escherichia coli [TaxId: 562]}
Probab=20.94 E-value=17 Score=14.05 Aligned_cols=74 Identities=14% Similarity=0.096 Sum_probs=49.9
Q ss_pred CCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHEEECHHHHHHHHHHHHCCCEEEEE-------C
Q ss_conf 887899999999972155303787316566578874101356677000778599999999875379809996-------2
Q gi|254780180|r 197 GLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGRIVSV-------G 269 (360)
Q Consensus 197 GLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~~g~rIiAV-------G 269 (360)
--++|++.++.|++.|++. +++|.=+|-|---+.+..+ | -.+++.++|+.+|+.|-.-|.+ |
T Consensus 145 P~~~~~~~l~~l~~~G~nR----iSlGvQs~~~~vl~~i~R~--~-----~~~~~~~~~~~~r~~g~~~vn~DLI~GlPg 213 (441)
T d1olta_ 145 PREIELDVLDHLRAEGFNR----LSMGVQDFNKEVQRLVNRE--Q-----DEEFIFALLNHAREIGFTSTNIDLIYGLPK 213 (441)
T ss_dssp SSSCCTHHHHHHHHTTCCE----EEEEEECCCHHHHHHHTCC--C-----CHHHHHHHHHHHHHTTCCSCEEEEEESCTT
T ss_pred CCCCCHHHHHHHHHHCCCE----EEECCHHCCHHHHHHHHCC--C-----CHHHHHHHHHHHHHCCCCEEECCCCCCCCC
T ss_conf 4542057899999719855----9951200130455443057--8-----789999999987741442362354432377
Q ss_pred ---HHHHHHHHHHHH
Q ss_conf ---878998999985
Q gi|254780180|r 270 ---TTSLRLLETATT 281 (360)
Q Consensus 270 ---TT~~R~LEs~~~ 281 (360)
-+..++|+.+..
T Consensus 214 qT~~~~~~tl~~~~~ 228 (441)
T d1olta_ 214 QTPESFAFTLKRVAE 228 (441)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
T ss_conf 603778899989985
No 26
>d1vjra_ c.108.1.14 (A:) Hypothetical protein TM1742 {Thermotoga maritima [TaxId: 2336]}
Probab=20.77 E-value=21 Score=13.45 Aligned_cols=21 Identities=14% Similarity=0.128 Sum_probs=11.8
Q ss_pred HCCCEEEEECHHHHHHHHHHH
Q ss_conf 379809996287899899998
Q gi|254780180|r 260 SRGGRIVSVGTTSLRLLETAT 280 (360)
Q Consensus 260 ~~g~rIiAVGTT~~R~LEs~~ 280 (360)
-...+++.||=+.--=++.+.
T Consensus 200 ~~~~~~lmVGD~~~~DI~ga~ 220 (261)
T d1vjra_ 200 VPKERMAMVGDRLYTDVKLGK 220 (261)
T ss_dssp CCGGGEEEEESCHHHHHHHHH
T ss_pred CCCHHCCEECCCHHHHHHHHH
T ss_conf 472211031687167899999
No 27
>d1o1xa_ c.121.1.1 (A:) Putative sugar-phosphate isomerase {Thermotoga maritima [TaxId: 2336]}
Probab=20.31 E-value=16 Score=14.31 Aligned_cols=65 Identities=22% Similarity=0.259 Sum_probs=41.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHEEECHHHHHHHHHHHHCCCE-EEEE
Q ss_conf 400555688789999999997215530378731656657887410135667700077859999999987537980-9996
Q gi|254780180|r 190 SVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGR-IVSV 268 (360)
Q Consensus 190 SVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~~g~r-IiAV 268 (360)
++++--||..+-+.|.+.|+++|+++. ..| |...-.++ |-.+....++.|.+-+. .+ |+-.
T Consensus 6 ~igsDh~G~~lK~~l~~~L~~~g~~v~----D~G--~~~~~~~d----------Ypd~a~~va~~v~~~~~--~~GIliC 67 (145)
T d1o1xa_ 6 AIASDHAAFELKEKVKNYLLGKGIEVE----DHG--TYSEESVD----------YPDYAKKVVQSILSNEA--DFGILLC 67 (145)
T ss_dssp EEEECSTTHHHHHHHHHHHHHTTCEEE----ECC--CCSSSCCC----------HHHHHHHHHHHHHTTSC--SEEEEEE
T ss_pred EEEECCHHHHHHHHHHHHHHHCCCEEE----ECC--CCCCCCCC----------CCHHHHHHHHHHHCCCC--CEEEEEC
T ss_conf 997287079999999999997799999----779--99777778----------34899999999734865--6799805
Q ss_pred CHHH
Q ss_conf 2878
Q gi|254780180|r 269 GTTS 272 (360)
Q Consensus 269 GTT~ 272 (360)
||=.
T Consensus 68 GtG~ 71 (145)
T d1o1xa_ 68 GTGL 71 (145)
T ss_dssp SSSH
T ss_pred CCCH
T ss_conf 8758
No 28
>d1jida_ d.201.1.1 (A:) SRP19 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.19 E-value=22 Score=13.36 Aligned_cols=36 Identities=22% Similarity=0.377 Sum_probs=21.1
Q ss_pred CCCHHHHCCCCC--------C-------CCCCCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 211433101345--------6-------7574005556887899999999972155
Q gi|254780180|r 174 ARDYVDYQTTYA--------K-------IQGSVAAPTAGLHFTSNLLSRLISIGIK 214 (360)
Q Consensus 174 ~~D~~~YQTVyA--------~-------~~GSVAAPTAGLHFt~~ll~~L~~kGi~ 214 (360)
.+|.+|||+||- . ..-||..||+ .++.+.+++-|+.
T Consensus 5 ~sd~~rw~iIyP~Y~Ds~~tr~eGRRv~k~~aV~~P~~-----~EI~~a~~~lgl~ 55 (114)
T d1jida_ 5 PADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTA-----TEIQDVCSAVGLN 55 (114)
T ss_dssp TTSGGGSEEECGGGGBTTSCTTTTCCSCTTTCBSSCCH-----HHHHHHHHHTTCC
T ss_pred CCCCCCCEEECCCCCCCCCCHHHCCCCCHHHHCCCCCH-----HHHHHHHHHCCCC
T ss_conf 66765678977720158787541574588896569899-----9999999985997
No 29
>d1wd7a_ c.113.1.1 (A:) Probable uroporphyrinogen-III synthase {Thermus thermophilus [TaxId: 274]}
Probab=20.03 E-value=22 Score=13.34 Aligned_cols=119 Identities=15% Similarity=0.119 Sum_probs=63.1
Q ss_pred CCCHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 86300025442035785222123456521143310134567574005556887899999999972155303787316566
Q gi|254780180|r 147 GIELERQISLVGTIPLPPYIARKRPIDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGT 226 (360)
Q Consensus 147 ~~~~~~~L~~~G~iPLPPYI~r~r~~~~~D~~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GT 226 (360)
|..-.+.|.++|--|- ++... ... +.- . ...+..+-+.-+..| +-.+.|.+.|++.|+++..+.. +-|
T Consensus 91 G~~Ta~aL~~~G~~~~--~~~~~--~s~-~l~--~-~~~~~~~~~l~~~~~-~~~~~L~~~L~~~G~~v~~v~~---Y~t 158 (254)
T d1wd7a_ 91 GAKAARALKEAGLPPH--AVGDG--TSK-SLL--P-LLPQGRGVAALQLYG-KPLPLLENALAERGYRVLPLMP---YRH 158 (254)
T ss_dssp SHHHHHHHHHTTCCCS--EECSS--SGG-GGG--G-GCCCCCEEEEEECSS-SCCHHHHHHHHHTTEEEEEECS---EEC
T ss_pred CHHHHHHHHHCCCCCC--CCCCH--HHH-HHH--H-HHHCCCCEEEEECCC-CCCHHHHHHHHHCCCCCEEEEE---EEE
T ss_conf 7899999997399985--37720--079-999--9-873479789995156-7837999999736676469998---664
Q ss_pred CCCCCC--C----CCCCCCCCCHHEEECHHHHHHHHHHH----------HCCCEEEEECHHHHHHHHHH
Q ss_conf 578874--1----01356677000778599999999875----------37980999628789989999
Q gi|254780180|r 227 FMPVKV--E----DTDDHIMHSEIGFIDAPTAQALNSVK----------SRGGRIVSVGTTSLRLLETA 279 (360)
Q Consensus 227 F~Pi~~--~----~i~~h~mH~E~~~i~~~~~~~I~~ak----------~~g~rIiAVGTT~~R~LEs~ 279 (360)
- |... + .+.+...+. -.+-|..+++..-+.- ..+-+|+|+|.++.++|+..
T Consensus 159 ~-~~~~~~~~l~~~l~~~~~d~-V~ftS~s~v~~f~~~~~~~~~~~~~~~~~~~v~aIGp~Ta~al~~~ 225 (254)
T d1wd7a_ 159 L-PDPEGILRLEEALLRGEVDA-LAFVAAIQVEFLFEGAKDPKALREALNTRVKALAVGRVTADALREW 225 (254)
T ss_dssp C-BCHHHHHHHHHHHHTTCCSE-EEESSHHHHHHHHHHCSCHHHHHHHHHTTSEEEEESHHHHHHHHHT
T ss_pred E-CCCCCHHHHHHHHHCCCCEE-EEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHC
T ss_conf 0-33367388999984289529-9847889999999987553033777426978999899999999976
Done!