RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780180|ref|YP_003064593.1| S-adenosylmethionine:tRNA
ribosyltransferase-isomerase [Candidatus Liberibacter asiaticus str.
psy62]
         (360 letters)



>d1wdia_ e.53.1.1 (A:) Queuosine biosynthesis protein queA {Thermus
           thermophilus [TaxId: 274]}
          Length = 344

 Score =  329 bits (844), Expect = 3e-91
 Identities = 149/355 (41%), Positives = 196/355 (55%), Gaps = 19/355 (5%)

Query: 5   EFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNT 64
            +D+ LPP +IA   V PRD ARLMVV+     P  ++   V DLP FL   D +VFN +
Sbjct: 5   AYDYHLPPEQIAQEGVEPRDMARLMVVYRE--GPFRVAHKRVRDLPEFLRPGDVLVFNES 62

Query: 65  KVITAQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQS 124
           KVI A+L   +         ++   L    SP  W     P++    G  L   S    +
Sbjct: 63  KVIPARLLARKPTG-----GKVEILLVRERSPGLWEALLGPARKAPPGTRLLLLSPKDLA 117

Query: 125 R---LEATVIDKWNTGEILLVFSISGIELERQISLVGTIPLPPYIARKRPIDARDYVDYQ 181
               L+A V+     G  LL F    +    ++     +PLPPYI  K P        YQ
Sbjct: 118 PVPGLQAEVVAVEEDGVRLLRFQGDLVAHLEEVG---EVPLPPYIKAKIP-----MERYQ 169

Query: 182 TTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMH 241
           T YA+  GSVAAPTAGLHFT  LL RL  +G+++ F+TLHVG GTF PVK  D + H MH
Sbjct: 170 TVYARRPGSVAAPTAGLHFTPELLERLREMGVELRFLTLHVGPGTFRPVK-GDPEKHEMH 228

Query: 242 SEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPGY 301
           +E   I    A+A+N  K+ G R+V+VGTT +R LE+A  E   +    G T +FI P Y
Sbjct: 229 AEPYAIPEEVAEAVNRAKAEGRRVVAVGTTVVRALESAYREGVGVVAGEGETRLFIRPPY 288

Query: 302 RFRAVDILMSNFHLPKSTLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLL 356
            F+ VD L +NFHLP+STLLMLV+AF G E T + Y+ A++  YRFYS GD  L+
Sbjct: 289 TFKVVDALFTNFHLPRSTLLMLVAAFLGRERTLEAYRLAVAEGYRFYSLGDAMLI 343


>d1vkya_ e.53.1.1 (A:) Queuosine biosynthesis protein queA
           {Thermotoga maritima [TaxId: 2336]}
          Length = 332

 Score =  315 bits (809), Expect = 3e-87
 Identities = 138/352 (39%), Positives = 191/352 (54%), Gaps = 22/352 (6%)

Query: 5   EFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNT 64
           EFD++LPP  IA  PV PRD++RLMV+H        I   +  ++  +L   D +V N +
Sbjct: 2   EFDYELPPELIAQEPVEPRDASRLMVLHRKTQR---IEHRIFREIIEYLEPGDLLVLNVS 58

Query: 65  KVITAQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQS 124
           KVI A+L   +    +     I   L  R+    W    RP + +KKG  L         
Sbjct: 59  KVIPARLYARKKTGAS-----IEILLIERLEEGIWKCLVRPGQKVKKGTELVIDEDL--- 110

Query: 125 RLEATVIDKWNTGEILLVFSISGIELERQISLVGTIPLPPYIARKRPIDARDYVDYQTTY 184
              A  + +   G  +L F      L  +    G  PLPPYI  + P++      YQT Y
Sbjct: 111 --SAVCLGRGEDGTRILKFQPQDDRLIFEK---GRTPLPPYIKNEVPLE-----RYQTVY 160

Query: 185 AKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEI 244
           AK +GSVAAPTAGLHFT  L+ +L   G++   V LHVG GTF PVKVE+ + H MH E 
Sbjct: 161 AKEEGSVAAPTAGLHFTPELIEKLKKKGVQFAEVVLHVGIGTFRPVKVEEVEKHKMHEEF 220

Query: 245 GFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPGYRFR 304
             +   T + L   + RG RIV+VGTT++R LET          + G T++FI P + F+
Sbjct: 221 YQVPKETVRKLRETRERGNRIVAVGTTTVRTLETIAR-LPEQEEYVGKTDLFIYPPFEFK 279

Query: 305 AVDILMSNFHLPKSTLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLL 356
            VD L++NFHLP+STLLMLV+AF G +   + Y+ A+   YRF+S+GD  L+
Sbjct: 280 LVDALVTNFHLPRSTLLMLVAAFAGKDFVMEAYREAVKRRYRFFSFGDAMLI 331


>d3bzka3 a.294.1.1 (A:1-324) Transcriptional accessory factor Tex
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 324

 Score = 26.4 bits (58), Expect = 3.7
 Identities = 10/68 (14%), Positives = 17/68 (25%)

Query: 69  AQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQSRLEA 128
                 R   I R   E   +  ++V   +         +I +   L    +     L  
Sbjct: 220 KSAPSHRALAIFRGRNEGVLSASLKVGEEAPGTLHPCEVMIAERFGLSNQGRAADKWLAE 279

Query: 129 TVIDKWNT 136
            V   W  
Sbjct: 280 VVRWTWKV 287


>d1j36a_ d.92.1.5 (A:) Angiotensin converting enzyme, ACE {Fruit fly
           (Drosophila melanogaster) [TaxId: 7227]}
          Length = 598

 Score = 26.2 bits (57), Expect = 4.1
 Identities = 7/65 (10%), Positives = 17/65 (26%)

Query: 294 NIFITPGYRFRAVDILMSNFHLPKSTLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDT 353
              I      R +    S +       + +       ++      H + H   F  Y   
Sbjct: 300 KSIIEKPTDGRDLVCHASAWDFYLIDDVRIKQCTRVTQDQLFTVHHELGHIQYFLQYQHQ 359

Query: 354 SLLFQ 358
             +++
Sbjct: 360 PFVYR 364


>d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 119

 Score = 25.8 bits (57), Expect = 5.5
 Identities = 9/69 (13%), Positives = 20/69 (28%), Gaps = 22/69 (31%)

Query: 78  HINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQSRLEATVI---DKW 134
           H   ++      +   +S +    Y + +  +  GD                V+      
Sbjct: 17  HERHKQ------VRATLSADLREEYGQRNVRVNAGD-------------TVEVLRGDFAG 57

Query: 135 NTGEILLVF 143
             GE++ V 
Sbjct: 58  EEGEVINVD 66


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.138    0.409 

Gapped
Lambda     K      H
   0.267   0.0606    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,357,373
Number of extensions: 62677
Number of successful extensions: 136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 12
Length of query: 360
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 274
Effective length of database: 1,226,816
Effective search space: 336147584
Effective search space used: 336147584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.5 bits)