RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780180|ref|YP_003064593.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Candidatus Liberibacter asiaticus str. psy62] (360 letters) >d1wdia_ e.53.1.1 (A:) Queuosine biosynthesis protein queA {Thermus thermophilus [TaxId: 274]} Length = 344 Score = 329 bits (844), Expect = 3e-91 Identities = 149/355 (41%), Positives = 196/355 (55%), Gaps = 19/355 (5%) Query: 5 EFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNT 64 +D+ LPP +IA V PRD ARLMVV+ P ++ V DLP FL D +VFN + Sbjct: 5 AYDYHLPPEQIAQEGVEPRDMARLMVVYRE--GPFRVAHKRVRDLPEFLRPGDVLVFNES 62 Query: 65 KVITAQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQS 124 KVI A+L + ++ L SP W P++ G L S + Sbjct: 63 KVIPARLLARKPTG-----GKVEILLVRERSPGLWEALLGPARKAPPGTRLLLLSPKDLA 117 Query: 125 R---LEATVIDKWNTGEILLVFSISGIELERQISLVGTIPLPPYIARKRPIDARDYVDYQ 181 L+A V+ G LL F + ++ +PLPPYI K P YQ Sbjct: 118 PVPGLQAEVVAVEEDGVRLLRFQGDLVAHLEEVG---EVPLPPYIKAKIP-----MERYQ 169 Query: 182 TTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMH 241 T YA+ GSVAAPTAGLHFT LL RL +G+++ F+TLHVG GTF PVK D + H MH Sbjct: 170 TVYARRPGSVAAPTAGLHFTPELLERLREMGVELRFLTLHVGPGTFRPVK-GDPEKHEMH 228 Query: 242 SEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPGY 301 +E I A+A+N K+ G R+V+VGTT +R LE+A E + G T +FI P Y Sbjct: 229 AEPYAIPEEVAEAVNRAKAEGRRVVAVGTTVVRALESAYREGVGVVAGEGETRLFIRPPY 288 Query: 302 RFRAVDILMSNFHLPKSTLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLL 356 F+ VD L +NFHLP+STLLMLV+AF G E T + Y+ A++ YRFYS GD L+ Sbjct: 289 TFKVVDALFTNFHLPRSTLLMLVAAFLGRERTLEAYRLAVAEGYRFYSLGDAMLI 343 >d1vkya_ e.53.1.1 (A:) Queuosine biosynthesis protein queA {Thermotoga maritima [TaxId: 2336]} Length = 332 Score = 315 bits (809), Expect = 3e-87 Identities = 138/352 (39%), Positives = 191/352 (54%), Gaps = 22/352 (6%) Query: 5 EFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNT 64 EFD++LPP IA PV PRD++RLMV+H I + ++ +L D +V N + Sbjct: 2 EFDYELPPELIAQEPVEPRDASRLMVLHRKTQR---IEHRIFREIIEYLEPGDLLVLNVS 58 Query: 65 KVITAQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQS 124 KVI A+L + + I L R+ W RP + +KKG L Sbjct: 59 KVIPARLYARKKTGAS-----IEILLIERLEEGIWKCLVRPGQKVKKGTELVIDEDL--- 110 Query: 125 RLEATVIDKWNTGEILLVFSISGIELERQISLVGTIPLPPYIARKRPIDARDYVDYQTTY 184 A + + G +L F L + G PLPPYI + P++ YQT Y Sbjct: 111 --SAVCLGRGEDGTRILKFQPQDDRLIFEK---GRTPLPPYIKNEVPLE-----RYQTVY 160 Query: 185 AKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEI 244 AK +GSVAAPTAGLHFT L+ +L G++ V LHVG GTF PVKVE+ + H MH E Sbjct: 161 AKEEGSVAAPTAGLHFTPELIEKLKKKGVQFAEVVLHVGIGTFRPVKVEEVEKHKMHEEF 220 Query: 245 GFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPGYRFR 304 + T + L + RG RIV+VGTT++R LET + G T++FI P + F+ Sbjct: 221 YQVPKETVRKLRETRERGNRIVAVGTTTVRTLETIAR-LPEQEEYVGKTDLFIYPPFEFK 279 Query: 305 AVDILMSNFHLPKSTLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLL 356 VD L++NFHLP+STLLMLV+AF G + + Y+ A+ YRF+S+GD L+ Sbjct: 280 LVDALVTNFHLPRSTLLMLVAAFAGKDFVMEAYREAVKRRYRFFSFGDAMLI 331 >d3bzka3 a.294.1.1 (A:1-324) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]} Length = 324 Score = 26.4 bits (58), Expect = 3.7 Identities = 10/68 (14%), Positives = 17/68 (25%) Query: 69 AQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQSRLEA 128 R I R E + ++V + +I + L + L Sbjct: 220 KSAPSHRALAIFRGRNEGVLSASLKVGEEAPGTLHPCEVMIAERFGLSNQGRAADKWLAE 279 Query: 129 TVIDKWNT 136 V W Sbjct: 280 VVRWTWKV 287 >d1j36a_ d.92.1.5 (A:) Angiotensin converting enzyme, ACE {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 598 Score = 26.2 bits (57), Expect = 4.1 Identities = 7/65 (10%), Positives = 17/65 (26%) Query: 294 NIFITPGYRFRAVDILMSNFHLPKSTLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDT 353 I R + S + + + ++ H + H F Y Sbjct: 300 KSIIEKPTDGRDLVCHASAWDFYLIDDVRIKQCTRVTQDQLFTVHHELGHIQYFLQYQHQ 359 Query: 354 SLLFQ 358 +++ Sbjct: 360 PFVYR 364 >d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 119 Score = 25.8 bits (57), Expect = 5.5 Identities = 9/69 (13%), Positives = 20/69 (28%), Gaps = 22/69 (31%) Query: 78 HINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQSRLEATVI---DKW 134 H ++ + +S + Y + + + GD V+ Sbjct: 17 HERHKQ------VRATLSADLREEYGQRNVRVNAGD-------------TVEVLRGDFAG 57 Query: 135 NTGEILLVF 143 GE++ V Sbjct: 58 EEGEVINVD 66 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.323 0.138 0.409 Gapped Lambda K H 0.267 0.0606 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,357,373 Number of extensions: 62677 Number of successful extensions: 136 Number of sequences better than 10.0: 1 Number of HSP's gapped: 129 Number of HSP's successfully gapped: 12 Length of query: 360 Length of database: 2,407,596 Length adjustment: 86 Effective length of query: 274 Effective length of database: 1,226,816 Effective search space: 336147584 Effective search space used: 336147584 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 53 (24.5 bits)