HHsearch alignment for GI: 254780181 and conserved domain: COG0196
>COG0196 RibF FAD synthase [Coenzyme metabolism].
Probab=97.98 E-value=9.2e-05 Score=48.52 Aligned_cols=143 Identities=16% Similarity=0.123 Sum_probs=66.9
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHC----CEEEEECCCCCCC----C----CCCCCHHHHHHHHHHHHHHHCCCC--C
Q ss_conf 599965899878489999999999748----9799964558887----6----657898999999999764201335--5
Q gi|254780181|r 3 RKAVYTGSFDPITNGHMDIIIQALSFV----EDLVIAIGCNSVK----T----KGFLSIQERSELIKQSIFHFIPDS--S 68 (182)
Q Consensus 3 kigifgGsFdPiH~GHL~ia~~a~~~~----D~vii~~~~~p~k----~----~~~~s~e~r~~m~~~a~~~~~~~~--~ 68 (182)
T Consensus 16 ~~~l~IG~FDGvHlGHq~ll~~a~~~a~~~~~~~~VitF~p~P~~~~~~~~~~~~Lt~~~~k~~~l~~~gvd~~~v~~F~ 95 (304)
T COG0196 16 GCVLTIGNFDGVHLGHQKLLAQALEAAEKRGLPVVVITFEPHPRELLKPDKPPTRLTPLREKIRLLAGYGVDALVVLDFD 95 (304)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECC
T ss_conf 85899974776156699999999999987289669999369978870877772003798999999986699689999678
Q ss_pred CCCEEECCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC-CCCEEEEECCC-CCCCCCHHHHHHHHHCCC
Q ss_conf 4412420333332210014970799943765201246779989876479-98689970685-721132699999998599
Q gi|254780181|r 69 NRVSVISFEGLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCP-EIATIALFAKE-SSRYVTSTLIRHLISIDA 146 (182)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~i~l~~~~-~~~~ISST~IR~~i~~g~ 146 (182)
T Consensus 96 ~~fa~ls~~~Fv~~lv~~l~~k~ivvG~DF~FGk~~~g~~~-~L~~~~~~gf~v~~v~~~~~~~~~iSSt~IR~~L~~gd 174 (304)
T COG0196 96 LEFANLSAEEFVELLVEKLNVKHIVVGFDFRFGKGRQGNAE-LLRELGQKGFEVTIVPKINEEGIRISSTAIRQALREGD 174 (304)
T ss_pred HHHHHCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHH-HHHHHCCCCCEEEEECCEECCCCEECHHHHHHHHHCCC
T ss_conf 65763997899999984458728999336416888889899-99973557853999454722795782599999876489