HHsearch alignment for GI: 254780181 and conserved domain: TIGR01526

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase; InterPro: IPR006417 The NadR protein of Escherichia coli and closely related bacteria is both enzyme and regulatory protein. The first 60 or so amino acids, N-terminal region is a DNA-binding helix-turn-helix domain (IPR001387 from INTERPRO) responsible for repressing the nadAB genes of NAD de novo biosynthesis. The NadR homologs in Mycobacterium tuberculosis, Haemophilus influenzae, and others appear to lack the repressor domain. NadR has recently been shown to act as an enzyme of the salvage pathway of NAD biosynthesis, nicotinamide-nucleotide adenylyltransferase; members of this family are presumed to share this activity. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this family share that activity. ; GO: 0003677 DNA binding, 0030528 transcription regulator activity, 0006810 transport, 0019363 pyridine nucleotide biosynthetic process, 0045449 regulation of transcription.
Probab=99.38  E-value=3.2e-13  Score=98.88  Aligned_cols=153  Identities=14%  Similarity=0.111  Sum_probs=104.4

Q ss_pred             CEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCC---------CCCCCCCCHHHHHHHHHHHHHHHCC-CCCCCC
Q ss_conf             659996589987848999999999974897999645588---------8766578989999999997642013-355441
Q gi|254780181|r    2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNS---------VKTKGFLSIQERSELIKQSIFHFIP-DSSNRV   71 (182)
Q Consensus         2 mkigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p---------~k~~~~~s~e~r~~m~~~a~~~~~~-~~~~~~   71 (182)
T Consensus         1 k~~G~~fGkF~P~HtGH~~li~~a~s~vDel~ivvg~D~~RD~~lf~D~~a~~~~p~~~R~rwl~e~F~~~~N~i~~~~~   80 (346)
T TIGR01526         1 KTIGVVFGKFYPLHTGHIYLIYKAASKVDELHIVVGSDDVRDLKLFNDSTAAEGPPVEDRLRWLRELFKYQKNVIKIHNL   80 (346)
T ss_pred             CCEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf             90457845558985145999999854268148997277233222200022311789889999998616743266886112


Q ss_pred             EEECCCCCCCCCCCCCCCEEEEE------ECCCCCCHHHHH-HHHHHHHHH-CCCCCEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf             24203333322100149707999------437652012467-799898764-7998689970685721132699999998
Q gi|254780181|r   72 SVISFEGLAVNLAKDISAQVIVR------GLRDMTDFDYEM-RMTSVNRCL-CPEIATIALFAKESSRYVTSTLIRHLIS  143 (182)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-~~~~~~~~l-~~~~~~i~l~~~~~~~~ISST~IR~~i~  143 (182)
T Consensus        81 ne~~~~~~P~GWd~W~~~l~~l~~~~tle~~~p~~vy~~E~~y~A~~~~~L~aDG~~~~~vd~~Rt~~~vsAT~IR~~P~  160 (346)
T TIGR01526        81 NENGLPEYPNGWDIWSNSLKELLAEKTLERIEPDLVYVSEPEYAAEYKKVLGADGAEFVLVDPDRTFVSVSATQIRENPF  160 (346)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHCCCCCCEEEEECCCCCEEECCHHHHHCCHH
T ss_conf             88878887776678999998998654410146755772560014047862788863699981897145044205321534


Q ss_pred             CCCCHHHCCCHHHH
Q ss_conf             59995583999999
Q gi|254780181|r  144 IDADITSFVPDPVC  157 (182)
Q Consensus       144 ~g~~i~~lVP~~V~  157 (182)
T Consensus       161 --~hW~-hIpr~~r  171 (346)
T TIGR01526       161 --EHWQ-HIPREVR  171 (346)
T ss_pred             --HHHH-HCCCEEC
T ss_conf             --5130-1472023