HHsearch alignment for GI: 254780181 and conserved domain: TIGR02199
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II; InterPro: IPR011914 RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in some other genome. Domain I (IPR011913 from INTERPRO) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .; GO: 0016773 phosphotransferase activity alcohol group as acceptor, 0016779 nucleotidyltransferase activity, 0005975 carbohydrate metabolic process.
Probab=97.59 E-value=0.0011 Score=42.19 Aligned_cols=127 Identities=19% Similarity=0.213 Sum_probs=82.8
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCC------CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEC
Q ss_conf 6599965899878489999999999748979996455888------7665789899999999976420133554412420
Q gi|254780181|r 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSV------KTKGFLSIQERSELIKQSIFHFIPDSSNRVSVIS 75 (182)
Q Consensus 2 mkigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p~------k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~ 75 (182)
T Consensus 11 ~kvVFTNGCFDiLH~GHV~YL~~Ar~LGD~LvVGvNSD~SV~RLKG~~RPi~~e~~Ra~-vLaaL~~V------D~VV~F 83 (144)
T TIGR02199 11 KKVVFTNGCFDILHAGHVSYLQQARALGDRLVVGVNSDASVKRLKGETRPINSEEDRAE-VLAALSSV------DYVVIF 83 (144)
T ss_pred CCEEECCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHCCCCCCCCCCCHHHHHH-HHHCCCCE------EEEEEC
T ss_conf 97785177310102113768999997198668986170455305768989157767899-98447850------037863
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 33333221001497079994376520124677998987647998689970685721132699999998
Q gi|254780181|r 76 FEGLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIALFAKESSRYVTSTLIRHLIS 143 (182)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~~~~~~ISST~IR~~i~ 143 (182)
T Consensus 84 ~EDTP~~LI~~~~PdilVKGGDY~~~~~vg~~---~V~--~yGG~V~~l~f~~g---~STT~ii~ki~ 143 (144)
T TIGR02199 84 DEDTPEELIEELKPDILVKGGDYKLEELVGAE---LVE--SYGGQVVLLPFVEG---RSTTAIIEKIL 143 (144)
T ss_pred CCCCHHHHHHHHCCCEEEECCCCCCCCCCCHH---HHH--HCCCEEEEEEEECC---CCCHHHHHHHH
T ss_conf 89896899986296278504435855442448---998--62997989852179---84078999982