HHsearch alignment for GI: 254780181 and conserved domain: cd00517

>cd00517 ATPS ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be a monomer, a hom
Probab=98.25  E-value=8.4e-05  Score=48.74  Aligned_cols=152  Identities=14%  Similarity=0.178  Sum_probs=81.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHC---CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCC---------
Q ss_conf             99878489999999999748---979996455888766578989999999997642013355441242033---------
Q gi|254780181|r   10 SFDPITNGHMDIIIQALSFV---EDLVIAIGCNSVKTKGFLSIQERSELIKQSIFHFIPDSSNRVSVISFE---------   77 (182)
Q Consensus        10 sFdPiH~GHL~ia~~a~~~~---D~vii~~~~~p~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~~~---------   77 (182)
T Consensus       164 TRNp~HraHe~l~~~Ale~~~~~~~lli~P~vG~~k-~gD~~~~~r~~~y~~l~~~y~p~~~~~l~~~p~~mryAGPrEA  242 (356)
T cd00517         164 TRNPMHRAHEELMKRALERLLENDGLLLHPLVGWTK-PGDVPDEVRMRAYEALLEEYYLPERTVLAILPLAMRYAGPREA  242 (356)
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCC-CCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHH
T ss_conf             189997479999999999714387189973336788-8898989999999999970689860899842454355555889


Q ss_pred             CCCCCCCCCCCCEEEEEECCCCC-----CHHHHHHHHHHHHHHCC-C--CCEEE--------------EEC-----CCCC
Q ss_conf             33322100149707999437652-----01246779989876479-9--86899--------------706-----8572
Q gi|254780181|r   78 GLAVNLAKDISAQVIVRGLRDMT-----DFDYEMRMTSVNRCLCP-E--IATIA--------------LFA-----KESS  130 (182)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~-~--~~~i~--------------l~~-----~~~~  130 (182)
T Consensus       243 l~hAiiRkN~GcthfiVGRDHAG~g~~~~fY~~y~aq~i~~~~~~~~l~I~~v~~~~~~Yc~~c~~~~~~~~cph~~~~~  322 (356)
T cd00517         243 LWHAIIRKNYGATHFIVGRDHAGVGHPEDYYGPYDAQEIFKKYPMGELGIEPVPFREAAYCPKCLGMVFADTCPHHKEDF  322 (356)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCEEEEECCCCEEEECCCCCCCCCCE
T ss_conf             99999999769965887676678888757788415689998548667863799766369986779188766679997745


Q ss_pred             CCCCHHHHHHHHHCCCC-HHHCCCHHHHHHHHH
Q ss_conf             11326999999985999-558399999999999
Q gi|254780181|r  131 RYVTSTLIRHLISIDAD-ITSFVPDPVCVFLKN  162 (182)
Q Consensus       131 ~~ISST~IR~~i~~g~~-i~~lVP~~V~~yIk~  162 (182)
T Consensus       323 ~~iSGt~iR~~L~~G~~pP~~f~rpeV~~~L~~  355 (356)
T cd00517         323 LNISGTKMREMLREGEKPPEWFMRPEVAKVLRE  355 (356)
T ss_pred             EECCHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf             851789999999776989965772999999975