HHsearch results for GI: 254780181 and protein with PDBid: 3glv_A
>3glv_A Lipopolysaccharide core biosynthesis protein; structural genomics, PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1}
Probab=99.44 E-value=1.6e-13 Score=99.44 Aligned_cols=134 Identities=19% Similarity=0.280 Sum_probs=78.1
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCC----CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECC
Q ss_conf 9659996589987848999999999974897999645588----876657898999999999764201335544124203
Q gi|254780181|r 1 MMRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNS----VKTKGFLSIQERSELIKQSIFHFIPDSSNRVSVISF 76 (182)
Q Consensus 1 MmkigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p----~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~~ 76 (182)
|||+ +.+|+|||+|.||+.++++|.+++|.+++....++ .+.......+.+....... ..........
T Consensus 2 M~rV-~~~G~FD~~H~GH~~ll~~Ak~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 73 (143)
T 3glv_A 2 MIRV-MATGVFDILHLGHIHYLKESKKLGDELVVVVARDSTARNNGKIPIFDENSRLALISEL-------KVVDRAILGH 73 (143)
T ss_dssp CCEE-EEEECCSSCCHHHHHHHHHHHTTSSEEEEEECCHHHHHHTTCCCSSCHHHHHHHHTTB-------TTCSEEEECC
T ss_pred CEEE-EEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC-------CCEEEEEEEC
T ss_conf 7899-9985789998999999999987098223222357400023322006899999862245-------5404899741
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCC
Q ss_conf 3333221001497079994376520124677998987647998689970685721132699999998599
Q gi|254780181|r 77 EGLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIALFAKESSRYVTSTLIRHLISIDA 146 (182)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~~~~~~ISST~IR~~i~~g~ 146 (182)
................+.|.+-. +. ........+.+..+.+.+.+...... .||||.||+++.+..
T Consensus 74 ~~~~~~~~~~~~~~~~v~G~D~~--~~-~~~~~~~~~~~~~~~~~i~~~~~~~~-~iSST~I~~~i~~~~ 139 (143)
T 3glv_A 74 EGDMMKTVIEVKPDIITLGYDQK--FD-EAELQSKINKLGITVKIVRISKYDGQ-LNSSSSVRKKIMELI 139 (143)
T ss_dssp TTCHHHHHHHHCCSEEEECTTCH--HH-HHHHHHHHHHHTCCCEEEECCCCC------------------
T ss_pred CHHHHHHHHHHCCCEEEECCCCC--CC-CHHHHHHHHHCCCCEEEEEEECCCCE-EEEHHHHHHHHHHHC
T ss_conf 14677899996999899778754--76-33789999971991899996658993-885799999999962