HHsearch results for GI: 254780181 and protein with PDBid: 3op1_A
>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae}
Probab=97.83 E-value=2.8e-05 Score=50.31 Aligned_cols=139 Identities=19% Similarity=0.167 Sum_probs=66.1
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHCC----EEEEECCCCCC-------CC---CCCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99658998784899999999997489----79996455888-------76---657898999999999764201335544
Q gi|254780181|r 5 AVYTGSFDPITNGHMDIIIQALSFVE----DLVIAIGCNSV-------KT---KGFLSIQERSELIKQSIFHFIPDSSNR 70 (182)
Q Consensus 5 gifgGsFdPiH~GHL~ia~~a~~~~D----~vii~~~~~p~-------k~---~~~~s~e~r~~m~~~a~~~~~~~~~~~ 70 (182)
.+--|.||=+|.||-.+++.+.+... ...+++-.++| +. ....+.++|.+.++....+........
T Consensus 23 VvtIG~FDGvHlGHq~li~~~~~~a~~~~~~~~v~TF~phP~~~~~~~~~~~~~~l~~~~ek~~~l~~~Gid~~~~~~F~ 102 (308)
T 3op1_A 23 VVVLGYFDGIHKGHQELFRVANKAARKDLLPIVVMTFNESPKIALEPYHPDLFLHILNPAERERKLKREGVEELYLLDFS 102 (308)
T ss_dssp EEEESCCSSCCHHHHHHHHHHHHHSSTTCCCEEEEEESSCTHHHHSCCCGGGGCBSSCHHHHHHHHHHHTCCEEEEECCC
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCCCCCHHCCCCCHHHHHHHHHHCCCCEEEEEECC
T ss_conf 99997172111899999999999999819978999767998998396785231125898999999987299789998468
Q ss_pred C--EEECCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE-CCCCCCCCCHHHHHHHHHCCC
Q ss_conf 1--242033333221001497079994376520124677998987647998689970-685721132699999998599
Q gi|254780181|r 71 V--SVISFEGLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIALF-AKESSRYVTSTLIRHLISIDA 146 (182)
Q Consensus 71 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~l~-~~~~~~~ISST~IR~~i~~g~ 146 (182)
. -..+...-............++.|.+-........ .....+... .+..... ....-..||||.||+.++.|.
T Consensus 103 ~~~a~ls~e~Fi~~L~~~l~~~~ivvG~DF~FG~~r~g-~~~~~~~~~--~~v~~v~~~~~~~~~ISST~IR~~l~~G~ 178 (308)
T 3op1_A 103 SQFASLTAQEFFATYIKAMNAKIIVAGFDYTFGSDKKT-AEDLKNYFD--GEVIIVPPVEDEKGKISSTRIRQAILDGN 178 (308)
T ss_dssp HHHHTCCHHHHHHHHHHHHTEEEEEEETTCCBTTTTBC-STTHHHHCS--SEEEEECCCBCSSCBCCHHHHHHHHHHTC
T ss_pred HHHHHCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHH-HHHHHHHCC--CEEEEECEEECCCCCEEHHHHHHHHHCCC
T ss_conf 88850899999999998558889998888577751034-899987559--52898220321686121799999998486