Query gi|254780181|ref|YP_003064594.1| phosphopantetheine adenylyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 182
No_of_seqs 108 out of 2743
Neff 8.9
Searched_HMMs 23785
Date Mon May 23 08:49:39 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780181.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nbk_A Phosphopantetheine aden 100.0 1.6E-34 6.5E-39 224.6 16.0 156 2-164 21-176 (177)
2 1o6b_A Phosphopantetheine aden 100.0 2.1E-33 8.8E-38 217.9 17.7 159 1-165 1-159 (169)
3 1vlh_A Phosphopantetheine aden 100.0 8.1E-33 3.4E-37 214.4 16.0 156 2-164 13-168 (173)
4 1qjc_A Phosphopantetheine aden 100.0 1.4E-32 5.8E-37 213.0 16.5 158 2-165 1-158 (158)
5 1od6_A PPAT, phosphopantethein 100.0 2.6E-32 1.1E-36 211.3 16.1 158 2-165 1-159 (160)
6 3k9w_A Phosphopantetheine aden 100.0 1.1E-31 4.8E-36 207.5 16.1 159 2-166 5-163 (170)
7 3h05_A Uncharacterized protein 100.0 4.6E-33 1.9E-37 215.8 8.4 162 1-170 1-174 (177)
8 3f3m_A Phosphopantetheine aden 100.0 2.4E-31 1E-35 205.6 16.3 158 1-164 2-159 (168)
9 1yum_A 'probable nicotinate-nu 100.0 3.7E-32 1.6E-36 210.4 8.6 165 2-167 23-231 (242)
10 2h29_A Probable nicotinate-nuc 100.0 6.5E-32 2.7E-36 209.0 8.4 166 1-166 1-187 (189)
11 1kqn_A Nmnat, nicotinamide mon 100.0 6.9E-30 2.9E-34 196.9 7.5 169 3-171 9-259 (279)
12 2qjo_A Bifunctional NMN adenyl 100.0 1.1E-29 4.7E-34 195.6 4.8 151 1-163 6-171 (341)
13 1nup_A FKSG76; NAD biosynthesi 99.9 3.1E-28 1.3E-32 187.1 7.9 168 3-170 7-237 (252)
14 2qtr_A Nicotinate (nicotinamid 99.9 1.3E-27 5.5E-32 183.3 9.2 167 1-167 1-188 (189)
15 1ej2_A Nicotinamide mononucleo 99.9 5.6E-27 2.4E-31 179.6 11.5 153 1-163 2-160 (181)
16 1f9a_A Hypothetical protein MJ 99.9 1.2E-26 5.2E-31 177.5 13.0 152 2-164 1-155 (168)
17 1k4m_A NAMN adenylyltransferas 99.9 4E-26 1.7E-30 174.5 10.3 165 1-166 1-212 (213)
18 1kam_A Deamido-NAD(+), nicotin 99.9 5.2E-26 2.2E-30 173.8 10.7 165 2-166 7-192 (194)
19 2qjt_B Nicotinamide-nucleotide 99.8 1.7E-21 7.1E-26 146.9 7.8 150 1-162 6-175 (352)
20 1lw7_A Transcriptional regulat 99.8 9.5E-20 4E-24 136.5 3.1 148 2-153 2-163 (365)
21 3do8_A Phosphopantetheine aden 99.7 2.2E-17 9.4E-22 122.4 3.1 134 2-142 1-140 (148)
22 3gmi_A UPF0348 protein MJ0951; 99.6 2.6E-14 1.1E-18 104.1 14.7 161 2-165 52-261 (357)
23 1coz_A Protein (glycerol-3-pho 99.6 1.3E-14 5.4E-19 105.9 9.0 124 2-144 1-128 (129)
24 2b7l_A Glycerol-3-phosphate cy 99.6 1.6E-14 6.6E-19 105.4 9.3 126 2-146 1-130 (132)
25 3glv_A Lipopolysaccharide core 99.4 1.6E-13 6.6E-18 99.4 6.9 134 1-146 2-139 (143)
26 3elb_A Ethanolamine-phosphate 99.1 9.4E-10 3.9E-14 77.0 10.6 130 2-145 8-141 (341)
27 3elb_A Ethanolamine-phosphate 99.1 7.2E-10 3E-14 77.6 9.7 134 2-147 198-339 (341)
28 3hl4_A Choline-phosphate cytid 98.8 5.6E-09 2.3E-13 72.4 6.0 129 5-146 79-213 (236)
29 1v47_A ATP sulfurylase; produc 98.5 5.7E-06 2.4E-10 54.4 12.9 157 4-162 158-347 (349)
30 1x6v_B Bifunctional 3'-phospho 98.4 1.8E-05 7.4E-10 51.5 14.4 167 3-171 414-625 (630)
31 1jhd_A Sulfate adenylyltransfe 98.2 0.00021 8.7E-09 45.1 15.6 162 4-167 195-394 (396)
32 2x0k_A Riboflavin biosynthesis 98.2 3.9E-05 1.6E-09 49.4 11.9 144 2-146 15-175 (338)
33 1g8f_A Sulfate adenylyltransfe 98.0 9.5E-05 4E-09 47.1 11.5 155 8-163 194-387 (511)
34 1r6x_A ATP:sulfate adenylyltra 98.0 0.00013 5.3E-09 46.4 12.0 157 6-163 191-386 (395)
35 1m8p_A Sulfate adenylyltransfe 98.0 0.00011 4.7E-09 46.7 11.7 155 3-163 192-388 (573)
36 2gks_A Bifunctional SAT/APS ki 98.0 8.4E-05 3.5E-09 47.5 10.4 158 4-163 166-364 (546)
37 3op1_A Macrolide-efflux protei 97.8 2.8E-05 1.2E-09 50.3 5.9 139 5-146 23-178 (308)
38 1mrz_A Riboflavin kinase/FMN a 97.7 9.4E-05 3.9E-09 47.2 7.4 135 6-146 3-148 (293)
39 3cr8_A Sulfate adenylyltranfer 97.6 0.00072 3E-08 41.9 10.8 157 8-166 169-364 (552)
40 2ejc_A Pantoate--beta-alanine 95.2 0.025 1.1E-06 32.7 5.0 58 3-61 23-87 (280)
41 1v8f_A Pantoate-beta-alanine l 94.1 0.042 1.8E-06 31.4 3.9 54 10-63 24-84 (276)
42 3n8h_A Pantothenate synthetase 94.0 0.12 5E-06 28.7 6.1 59 3-62 25-90 (264)
43 1iho_A Pantoate--beta-alanine 93.8 0.051 2.1E-06 30.9 3.9 60 3-63 23-89 (283)
44 3guz_A Pantothenate synthetase 93.5 0.059 2.5E-06 30.5 3.7 58 3-61 23-87 (176)
45 3ag6_A Pantothenate synthetase 93.5 0.057 2.4E-06 30.6 3.6 59 4-63 25-90 (283)
46 3inn_A Pantothenate synthetase 93.4 0.068 2.9E-06 30.1 3.9 60 3-63 44-110 (314)
47 3cov_A Pantothenate synthetase 91.3 0.14 5.9E-06 28.2 3.4 59 3-62 34-100 (301)
48 3mxt_A Pantothenate synthetase 90.3 0.16 6.6E-06 27.9 2.9 59 3-63 26-91 (285)
49 2z04_A Phosphoribosylaminoimid 86.3 0.42 1.8E-05 25.4 2.9 33 1-40 1-36 (365)
50 1gsa_A Glutathione synthetase; 70.6 5.3 0.00022 18.9 4.8 36 1-36 1-39 (316)
51 2a33_A Hypothetical protein; s 69.3 5.6 0.00023 18.7 4.3 28 1-28 13-40 (215)
52 2nv0_A Glutamine amidotransfer 68.3 4.6 0.00019 19.2 3.7 20 1-24 1-22 (196)
53 1t35_A Hypothetical protein YV 67.7 5.5 0.00023 18.8 4.0 27 1-27 1-27 (191)
54 3eth_A Phosphoribosylaminoimid 62.8 5.5 0.00023 18.8 3.3 32 1-39 1-35 (355)
55 2ywr_A Phosphoribosylglycinami 61.9 7.7 0.00032 17.9 3.9 29 133-163 161-189 (216)
56 1ydh_A AT5G11950; structural g 57.8 9.3 0.00039 17.4 4.4 28 1-28 9-36 (216)
57 1z69_A COG2141, coenzyme F420- 49.8 12 0.00052 16.6 4.4 35 2-37 1-36 (327)
58 1su1_A Hypothetical protein YF 48.5 13 0.00055 16.5 3.6 29 1-34 25-58 (208)
59 1f07_A Coenzyme F420-dependent 48.1 13 0.00056 16.5 4.0 35 2-37 1-36 (321)
60 1rqg_A Methionyl-tRNA syntheta 46.0 14 0.0006 16.3 5.5 40 1-41 1-52 (722)
61 1vkn_A N-acetyl-gamma-glutamyl 44.7 7.3 0.00031 18.0 1.5 32 1-37 13-46 (351)
62 3dhn_A NAD-dependent epimerase 43.0 9 0.00038 17.5 1.7 30 1-36 4-35 (227)
63 1weh_A Conserved hypothetical 40.5 17 0.00073 15.8 4.2 26 1-26 1-26 (171)
64 3k5i_A Phosphoribosyl-aminoimi 40.1 18 0.00075 15.7 4.4 34 1-41 24-60 (403)
65 2if2_A Dephospho-COA kinase; a 38.6 11 0.00045 17.1 1.5 24 1-28 1-24 (204)
66 1t4b_A Aspartate-semialdehyde 37.1 13 0.00053 16.6 1.7 34 1-38 1-38 (367)
67 1b73_A Glutamate racemase; iso 36.1 21 0.00086 15.4 6.3 47 2-60 1-55 (254)
68 3h99_A Methionyl-tRNA syntheta 35.9 21 0.00087 15.3 3.6 30 12-41 31-67 (560)
69 2yxn_A Tyrosyl-tRNA synthetase 34.8 22 0.00091 15.2 8.3 58 4-61 34-106 (322)
70 1r6t_A Tryptophanyl-tRNA synth 34.8 22 0.00091 15.2 3.1 60 3-63 155-222 (477)
71 1nnw_A Hypothetical protein; s 34.5 20 0.00085 15.4 2.4 22 1-27 1-22 (252)
72 1hdo_A Biliverdin IX beta redu 34.1 15 0.00063 16.2 1.7 30 1-36 3-34 (206)
73 3dr3_A N-acetyl-gamma-glutamyl 32.2 15 0.00064 16.1 1.5 10 1-10 4-13 (337)
74 1luc_A Bacterial luciferase; m 29.9 26 0.0011 14.7 3.9 35 2-36 1-43 (355)
75 3hzr_A Tryptophanyl-tRNA synth 29.7 23 0.00098 15.0 2.1 26 13-38 94-123 (386)
76 1r6u_A Tryptophanyl-tRNA synth 28.6 27 0.0012 14.6 4.1 55 4-58 109-170 (437)
77 2bmv_A Flavodoxin; electron tr 28.5 17 0.00069 15.9 1.2 25 1-29 1-26 (164)
78 2pid_A Tyrosyl-tRNA synthetase 27.1 29 0.0012 14.4 4.7 33 5-37 48-86 (356)
79 1jay_A Coenzyme F420H2:NADP+ o 26.3 23 0.00096 15.1 1.6 32 2-40 1-34 (212)
80 1iir_A Glycosyltransferase GTF 26.2 30 0.0013 14.3 5.1 30 2-36 1-35 (415)
81 3i05_A Tryptophanyl-tRNA synth 26.2 24 0.001 14.9 1.7 61 3-63 78-145 (395)
82 2wc1_A Flavodoxin; electron tr 25.2 21 0.0009 15.3 1.2 25 1-29 1-26 (182)
83 2g36_A Tryptophanyl-tRNA synth 24.2 33 0.0014 14.1 5.3 35 1-37 12-52 (340)
84 1gax_A Valrs, valyl-tRNA synth 24.2 33 0.0014 14.1 3.5 28 12-39 47-81 (862)
85 1xiy_A Peroxiredoxin, pfaop; a 23.9 34 0.0014 14.1 2.3 40 2-41 44-92 (182)
86 3foc_A Tryptophanyl-tRNA synth 23.4 34 0.0014 14.0 3.6 56 3-59 91-155 (451)
87 2r6j_A Eugenol synthase 1; phe 23.4 34 0.0014 14.0 3.3 30 1-36 10-42 (318)
88 3kfl_A Methionyl-tRNA syntheta 22.4 36 0.0015 13.9 3.4 29 12-40 39-74 (564)
89 3ew7_A LMO0794 protein; Q8Y8U8 22.3 30 0.0013 14.3 1.6 29 2-36 1-31 (221)
90 2ip1_A Tryptophanyl-tRNA synth 20.9 39 0.0016 13.7 4.2 52 10-61 112-168 (432)
No 1
>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3lcj_A* 1tfu_A
Probab=100.00 E-value=1.6e-34 Score=224.59 Aligned_cols=156 Identities=29% Similarity=0.459 Sum_probs=117.0
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCC
Q ss_conf 65999658998784899999999997489799964558887665789899999999976420133554412420333332
Q gi|254780181|r 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKGFLSIQERSELIKQSIFHFIPDSSNRVSVISFEGLAV 81 (182)
Q Consensus 2 mkigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~~~~~~~ 81 (182)
||||||||||||||+||+.+|++|+++||+|+|+++.+|++++.....+.+..+.......... ..........
T Consensus 21 mriai~~GsFdPiH~GHl~i~~~a~~~~D~viv~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 94 (177)
T 3nbk_A 21 MTGAVCPGSFDPVTLGHVDIFERAAAQFDEVVVAILVNPAKTGMFDLDERIAMVKESTTHLPNL------RVQVGHGLVV 94 (177)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHHHHSSEEEEEECCCTTSCCSSCHHHHHHHHHHHCTTCTTE------EEEECCSCHH
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCC------CCCCCCCHHH
T ss_conf 6699968677988789999999999869989998345787666557999999998765402454------2233321025
Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCHHHCCCHHHHHHHH
Q ss_conf 21001497079994376520124677998987647998689970685721132699999998599955839999999999
Q gi|254780181|r 82 NLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIALFAKESSRYVTSTLIRHLISIDADITSFVPDPVCVFLK 161 (182)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~~~~~~ISST~IR~~i~~g~~i~~lVP~~V~~yIk 161 (182)
.........................+.....+.+. ..+++++..++++.+||||+||+++++|++|++|||++|++|||
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~i~~~~~~~~~~ISST~IRe~i~~g~~i~~lVP~~V~~yIk 173 (177)
T 3nbk_A 95 DFVRSCGMTAIVKGLRTGTDFEYELQMAQMNKHIA-GVDTFFVATAPRYSFVSSSLAKEVAMLGGDVSELLPEPVNRRLR 173 (177)
T ss_dssp HHHHHTTCCEEEEEECTTCCHHHHHHHHHHHHHHH-CCEEEEEECCGGGSSCCHHHHHHHHHTTCCCGGGSCHHHHHHHH
T ss_pred HHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCCHHHHHHHHHCCCCHHHHCCHHHHHHHH
T ss_conf 56653487087521021411554626999999728-97779996588777533599999998499867956999999999
Q ss_pred HHH
Q ss_conf 999
Q gi|254780181|r 162 NIV 164 (182)
Q Consensus 162 ~~~ 164 (182)
||+
T Consensus 174 ekl 176 (177)
T 3nbk_A 174 DRL 176 (177)
T ss_dssp HHH
T ss_pred HHC
T ss_conf 862
No 2
>1o6b_A Phosphopantetheine adenylyltransferase; structural genomics; HET: ADP; 2.20A {Bacillus subtilis} SCOP: c.26.1.3
Probab=100.00 E-value=2.1e-33 Score=217.87 Aligned_cols=159 Identities=35% Similarity=0.559 Sum_probs=123.7
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCC
Q ss_conf 96599965899878489999999999748979996455888766578989999999997642013355441242033333
Q gi|254780181|r 1 MMRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKGFLSIQERSELIKQSIFHFIPDSSNRVSVISFEGLA 80 (182)
Q Consensus 1 MmkigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~~~~~~ 80 (182)
|+|||||||||||||+|||.+|++|++.+|+|+++++.++++ ....+.+.+.++++......... .........
T Consensus 1 M~~IgifgGsFdPiH~GHl~l~~~a~~~~D~v~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 74 (169)
T 1o6b_A 1 MASIAVCPGSFDPVTYGHLDIIKRGAHIFEQVYVCVLNNSSK-KPLFSVEERCELLREVTKDIPNI-----TVETSQGLL 74 (169)
T ss_dssp -CCEEEEEECCTTCCHHHHHHHHHHHHHSSEEEEEECCCCSS-CCSSCHHHHHHHHHHHHTTCTTE-----EEEECSSCH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHCCEEEECCCCCCCC-CCCCCHHHHHHHHHHHHHCCCCC-----CCCCCCCCC
T ss_conf 982899822568577999999999998799868712345566-77789899999999986227765-----211234322
Q ss_pred CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCHHHCCCHHHHHHH
Q ss_conf 22100149707999437652012467799898764799868997068572113269999999859995583999999999
Q gi|254780181|r 81 VNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIALFAKESSRYVTSTLIRHLISIDADITSFVPDPVCVFL 160 (182)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~~~~~~ISST~IR~~i~~g~~i~~lVP~~V~~yI 160 (182)
..........................+.......+.+..+++++..++++.+||||+||++++.|+||++|||++|.+||
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR~~i~~~~~i~~lVP~~V~~yI 154 (169)
T 1o6b_A 75 IDYARRKNAKAILRGLRAVSDFEYEMQGTSVNRVLDESIETFFMMANNQYSFLSSSIVKEVARYDGSVSEFVPPEVELAL 154 (169)
T ss_dssp HHHHHHTTCSEEEEEECSGGGHHHHHHHHHHHHHHCTTSEEEEEECCSTTTTCCHHHHHHHHHTTCCCTTTSCHHHHHHH
T ss_pred CCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHCCCCHHHHCCHHHHHHH
T ss_conf 00012457369998403632578887699999985789860464156347413789999999949994584999999999
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780181|r 161 KNIVI 165 (182)
Q Consensus 161 k~~~~ 165 (182)
+|++.
T Consensus 155 ~ek~~ 159 (169)
T 1o6b_A 155 QQKFR 159 (169)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99997
No 3
>1vlh_A Phosphopantetheine adenylyltransferase; TM0741, structural genomics, JCSG, protein structure initiative, PSI; HET: PNS; 2.20A {Thermotoga maritima} SCOP: c.26.1.3
Probab=100.00 E-value=8.1e-33 Score=214.35 Aligned_cols=156 Identities=37% Similarity=0.615 Sum_probs=122.7
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCC
Q ss_conf 65999658998784899999999997489799964558887665789899999999976420133554412420333332
Q gi|254780181|r 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKGFLSIQERSELIKQSIFHFIPDSSNRVSVISFEGLAV 81 (182)
Q Consensus 2 mkigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~~~~~~~ 81 (182)
|| |||||||||||+|||.+|++|++++|+|+|+++.++++ ....+.+.|.+|++.......... .........
T Consensus 13 Mk-aifgGsFdPiH~GHl~i~~~a~~~~D~viv~~~~~~~~-~~~~~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~ 85 (173)
T 1vlh_A 13 MK-AVYPGSFDPITLGHVDIIKRALSIFDELVVLVTENPRK-KCMFTLEERKKLIEEVLSDLDGVK-----VDVHHGLLV 85 (173)
T ss_dssp CE-EEEEECCTTCCHHHHHHHHHHHTTCSEEEEEEECCTTC-CCSSCHHHHHHHHHHHTTTCTTEE-----EEEECSCHH
T ss_pred CE-EEEEECCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCC-CCCCCHHHHHHHHHHHHCCCCEEE-----ECCCCCCCH
T ss_conf 26-99623478777999999999998699999950355567-877878899999986310221011-----001112101
Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCHHHCCCHHHHHHHH
Q ss_conf 21001497079994376520124677998987647998689970685721132699999998599955839999999999
Q gi|254780181|r 82 NLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIALFAKESSRYVTSTLIRHLISIDADITSFVPDPVCVFLK 161 (182)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~~~~~~ISST~IR~~i~~g~~i~~lVP~~V~~yIk 161 (182)
....................+....+...+....+++.+++++..++++.+||||+||++++.|+||++|||++|++||+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~l~~~~~~~~ISST~IR~~i~~g~~i~~lvP~~V~~yI~ 165 (173)
T 1vlh_A 86 DYLKKHGIKVLVRGLRAVTDYEYELQMALANKKLYSDLETVFLIASEKFSFISSSLVKEVALYGGDVTEWVPPEVARALN 165 (173)
T ss_dssp HHHHHHTCCEEEEEECTTSCHHHHHHHHHHHHHHSTTCEEEEEECCGGGTTCCHHHHHHHHHTTCCCTTTSCHHHHHHHH
T ss_pred HHHHHHCHHHEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEECHHHHHHHHHCCCCHHHHCCHHHHHHHH
T ss_conf 47764045551551367304788877999999867999677300576764045999999998499956848999999999
Q ss_pred HHH
Q ss_conf 999
Q gi|254780181|r 162 NIV 164 (182)
Q Consensus 162 ~~~ 164 (182)
|++
T Consensus 166 ek~ 168 (173)
T 1vlh_A 166 EKL 168 (173)
T ss_dssp HHT
T ss_pred HHH
T ss_conf 998
No 4
>1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.64A {Escherichia coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A* 3l92_A* 3l93_A
Probab=100.00 E-value=1.4e-32 Score=213.00 Aligned_cols=158 Identities=34% Similarity=0.668 Sum_probs=120.0
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCC
Q ss_conf 65999658998784899999999997489799964558887665789899999999976420133554412420333332
Q gi|254780181|r 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKGFLSIQERSELIKQSIFHFIPDSSNRVSVISFEGLAV 81 (182)
Q Consensus 2 mkigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~~~~~~~ 81 (182)
.|+|||||||||||+|||.+|++|++++|+++++++.+++++. ..+.+.+..++......... ...........
T Consensus 1 ~K~aifgGsFdPiH~GHl~ia~~a~~~~d~~~v~~~~~~~~k~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 74 (158)
T 1qjc_A 1 QKRAIYPGTFDPITNGHIDIVTRATQMFDHVILAIAASPSKKP-MFTLEERVALAQQATAHLGN-----VEVVGFSDLMA 74 (158)
T ss_dssp -CEEEEEECCTTCCHHHHHHHHHHHTTSSEEEEEEESCCSSCC-SSCHHHHHHHHHHHTTTCTT-----EEEEEECSCHH
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCC-CCCHHHHHHHHHHHHHHHCC-----CCCCCHHHHHH
T ss_conf 9689980077988799999999999977966798505533455-57778889999997420025-----45442013333
Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCHHHCCCHHHHHHHH
Q ss_conf 21001497079994376520124677998987647998689970685721132699999998599955839999999999
Q gi|254780181|r 82 NLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIALFAKESSRYVTSTLIRHLISIDADITSFVPDPVCVFLK 161 (182)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~~~~~~ISST~IR~~i~~g~~i~~lVP~~V~~yIk 161 (182)
....................+........+.+......+.+++..++++.+||||+||++++.|+||++|||++|++||+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR~~i~~g~~i~~lvP~~V~~yI~ 154 (158)
T 1qjc_A 75 NFARNQHATVLIRGLRAVADFEYEMQLAHMNRHLMPELESVFLMPSKEWSFISSSLVKEVARHQGDVTHFLPENVHQALM 154 (158)
T ss_dssp HHHHHTTCCEEEEECCTTCCHHHHHHHHHHHHHHCTTSEEEEECCCGGGTTCCHHHHHHHHHTTCCCGGGSCHHHHHHHH
T ss_pred HHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCHHHHCCHHHHHHHH
T ss_conf 23003452899860223126788878999998756676538974798876157899999998599945959999999999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780181|r 162 NIVI 165 (182)
Q Consensus 162 ~~~~ 165 (182)
+|++
T Consensus 155 ~k~~ 158 (158)
T 1qjc_A 155 AKLA 158 (158)
T ss_dssp HHHC
T ss_pred HHHC
T ss_conf 8639
No 5
>1od6_A PPAT, phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.5A {Thermus thermophilus} SCOP: c.26.1.3
Probab=100.00 E-value=2.6e-32 Score=211.35 Aligned_cols=158 Identities=34% Similarity=0.627 Sum_probs=116.0
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCC-CCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCC
Q ss_conf 659996589987848999999999974897999645588876657-8989999999997642013355441242033333
Q gi|254780181|r 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKGF-LSIQERSELIKQSIFHFIPDSSNRVSVISFEGLA 80 (182)
Q Consensus 2 mkigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p~k~~~~-~s~e~r~~m~~~a~~~~~~~~~~~~~~~~~~~~~ 80 (182)
||+ ||||||||+|+||+.+|++|+++||+|+++++.+|+|+... .+.+.++.++..+...... ..........
T Consensus 1 M~i-ifgGsFdP~H~GHl~ii~~a~~~~d~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 74 (160)
T 1od6_A 1 MHV-VYPGSFDPLTNGHLDVIQRASRLFEKVTVAVLENPSKRGQYLFSAEERLAIIREATAHLAN-----VEAATFSGLL 74 (160)
T ss_dssp CEE-EEEECCTTCCHHHHHHHHHHHHHSSEEEEEEECC-----CCSSCHHHHHHHHHHHTTTCTT-----EEEEEECSCH
T ss_pred CEE-EEEECCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC-----CCCCCCCCCC
T ss_conf 969-9502579768999999999998799999952677775566653689999999987753023-----3334410012
Q ss_pred CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCHHHCCCHHHHHHH
Q ss_conf 22100149707999437652012467799898764799868997068572113269999999859995583999999999
Q gi|254780181|r 81 VNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIALFAKESSRYVTSTLIRHLISIDADITSFVPDPVCVFL 160 (182)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~~~~~~ISST~IR~~i~~g~~i~~lVP~~V~~yI 160 (182)
...........................+........++...+++..+++..+||||+||++++.|+||++|||++|++||
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ISST~IRe~i~~g~~i~~lvP~~V~~yI 154 (160)
T 1od6_A 75 VDFVRRVGAQAIVKGLRAVSDYEYELQMAHLNRQLYPGLETLFILAATRYSFVSSTMVKEIARYGGDVSKLVPPATLRAL 154 (160)
T ss_dssp HHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTTCEEEEEECCGGGTTCCHHHHHHHHHTTCCCTTTSCHHHHHHH
T ss_pred CCCCEECCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCHHHHCCHHHHHHH
T ss_conf 32100014157886246779998750199999985789888986458887753679999999849993586999999999
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780181|r 161 KNIVI 165 (182)
Q Consensus 161 k~~~~ 165 (182)
||++.
T Consensus 155 k~k~~ 159 (160)
T 1od6_A 155 KAKLG 159 (160)
T ss_dssp HHHTT
T ss_pred HHHHC
T ss_conf 99877
No 6
>3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle structural genomics center for infectious disease, coenzyme A; HET: 4PS ADE PG4; 1.60A {Burkholderia pseudomallei 1710B} PDB: 3ikz_A*
Probab=99.98 E-value=1.1e-31 Score=207.54 Aligned_cols=159 Identities=33% Similarity=0.630 Sum_probs=110.1
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCC
Q ss_conf 65999658998784899999999997489799964558887665789899999999976420133554412420333332
Q gi|254780181|r 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKGFLSIQERSELIKQSIFHFIPDSSNRVSVISFEGLAV 81 (182)
Q Consensus 2 mkigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~~~~~~~ 81 (182)
||||||||||||+|+|||.++++|+++||+|+++++.++.+.. ....+.+..+............ .........
T Consensus 5 M~IaifgGsFdP~H~GHl~ii~~a~~~~D~v~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~ 78 (170)
T 3k9w_A 5 MVVAVYPGTFDPLTRGHEDLVRRASSIFDTLVVGVADSRAKKP-FFSLEERLKIANEVLGHYPNVK-----VMGFTGLLK 78 (170)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHHHHSSEEEEEEECCGGGCC-SSCHHHHHHHHHHHHTTCTTEE-----EEEESSCHH
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCC-CCCHHHHHHHHHHHHHCCCCCC-----CCCCCCCCC
T ss_conf 3899958567988899999999999978934272455544322-3569999999987652023444-----320034453
Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCHHHCCCHHHHHHHH
Q ss_conf 21001497079994376520124677998987647998689970685721132699999998599955839999999999
Q gi|254780181|r 82 NLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIALFAKESSRYVTSTLIRHLISIDADITSFVPDPVCVFLK 161 (182)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~~~~~~ISST~IR~~i~~g~~i~~lVP~~V~~yIk 161 (182)
........................................+++..++++.+||||+||+++++|++|++|||++|++||+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ISST~IR~~i~~~~~i~~lVP~~V~~yI~ 158 (170)
T 3k9w_A 79 DFVRANDARVIVRGLRAVSDFEYEFQMAGMNRYLLPDVETMFMTPSDQYQFISGTIVREIAQLGGDVSKFVFPSVEKWLT 158 (170)
T ss_dssp HHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHCTTCEEEEECCCGGGTTCCHHHHHHHHHTTCCCTTTSCHHHHHHHH
T ss_pred CCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHCCCCHHHHCCHHHHHHHH
T ss_conf 20001352367772224137888878888778755575428830677876328799999998499935839999999999
Q ss_pred HHHHH
Q ss_conf 99998
Q gi|254780181|r 162 NIVIS 166 (182)
Q Consensus 162 ~~~~~ 166 (182)
|++.-
T Consensus 159 ek~~~ 163 (170)
T 3k9w_A 159 EKVAA 163 (170)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99986
No 7
>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG, midwest center for structural genomics, PSI; 1.65A {Vibrio parahaemolyticus}
Probab=99.98 E-value=4.6e-33 Score=215.85 Aligned_cols=162 Identities=16% Similarity=0.165 Sum_probs=117.2
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCCE----EE
Q ss_conf 96599965899878489999999999748979996455888766578989999999997642013355--4412----42
Q gi|254780181|r 1 MMRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKGFLSIQERSELIKQSIFHFIPDSS--NRVS----VI 74 (182)
Q Consensus 1 MmkigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p~k~~~~~s~e~r~~m~~~a~~~~~~~~~--~~~~----~~ 74 (182)
|+|||||||||||||+||+.+|+++ ..+|+|+|+|+.++++++..++.++|.+|++.+......... ...+ ..
T Consensus 1 MkkI~ifgGsFdP~h~GHl~i~~~~-~~~d~viv~p~~~~~~k~~~~~~~~R~~m~~~a~~~~~~~~v~v~~~e~~~~~~ 79 (177)
T 3h05_A 1 MKKIAIFGSAFNPPSLGHKSVIESL-SHFDLVLLEPSIAHAWGKNMLDYPIRCKLVDAFIKDMGLSNVQRSDLEQALYQP 79 (177)
T ss_dssp CCEEEEEEECCSSCCHHHHHHHTTC-TTSSEEEEEECC-------CCCHHHHHHHHHHHHHHHCCTTEEECCHHHHHC--
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHH-HHCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEHHHHCCCC
T ss_conf 9579996654554129999999999-726969998202576567878999999999999987312682675444322655
Q ss_pred CCCCCC---C---CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCH
Q ss_conf 033333---2---2100149707999437652012467799898764799868997068572113269999999859995
Q gi|254780181|r 75 SFEGLA---V---NLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIALFAKESSRYVTSTLIRHLISIDADI 148 (182)
Q Consensus 75 ~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~~~~~~ISST~IR~~i~~g~~i 148 (182)
.....+ . ........++++.|.+....+..|..+..+.... . +...+...+||||+||++++.|++|
T Consensus 80 ~~s~~t~~~l~~l~~~~~~~~~~~iiG~D~~~~~~~W~~~~~i~~~~----~---~~~~pr~~~ISST~IR~~l~~g~~i 152 (177)
T 3h05_A 80 GQSVTTYALLEKIQEIYPTADITFVIGPDNFFKFAKFYKAEEITERW----T---VMACPEKVKIRSTDIRNALIEGKDI 152 (177)
T ss_dssp --CCCHHHHHHHHHHHSTTSEEEEEECHHHHHTGGGSTTHHHHHHHS----E---EEECCCSSCCCHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHCHHHHHHHC----C---EEEECCCCCCCHHHHHHHHHCCCCH
T ss_conf 33123789999887418850317763240676747642789998508----6---7984587784999999999859994
Q ss_pred HHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 5839999999999999986545
Q gi|254780181|r 149 TSFVPDPVCVFLKNIVISLVKY 170 (182)
Q Consensus 149 ~~lVP~~V~~yIk~~~~~~~k~ 170 (182)
++|||++|.+||++..+|.++.
T Consensus 153 ~~~vp~~V~~yI~~~~LY~~~~ 174 (177)
T 3h05_A 153 STYTTPTVSELLLNEGLYRETL 174 (177)
T ss_dssp TTTSCHHHHHHHHC--------
T ss_pred HHHCCHHHHHHHHHCCCCCCCC
T ss_conf 6978999999999876802543
No 8
>3f3m_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A biosynthetic pathway, coenzyme A biosynthesis, cytoplasm, nucleotidyltransferase; HET: PPS; 2.40A {Staphylococcus aureus}
Probab=99.98 E-value=2.4e-31 Score=205.55 Aligned_cols=158 Identities=37% Similarity=0.600 Sum_probs=126.8
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCC
Q ss_conf 96599965899878489999999999748979996455888766578989999999997642013355441242033333
Q gi|254780181|r 1 MMRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKGFLSIQERSELIKQSIFHFIPDSSNRVSVISFEGLA 80 (182)
Q Consensus 1 MmkigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~~~~~~ 80 (182)
+++||||||||||||+||+.+|++|++++|+++++++.++.. ....+...|.+|++.+......... .......
T Consensus 2 ~~~IgifgGsFdPiH~GHl~i~~~a~~~~d~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~~~~~ 75 (168)
T 3f3m_A 2 EHTIAVIPGSFDPITYGHLDIIERSTDRFDEIHVCVLKNSKK-EGTFSLEERMDLIEQSVKHLPNVKV-----HQFSGLL 75 (168)
T ss_dssp CCCEEEEEECCTTCCHHHHHHHHHHGGGSSEEEEEECC------CCSCHHHHHHHHHHHTTTCTTEEE-----EECCSCH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCCCC-CCCCCHHHHHHHHHHHHCCCCCEEE-----EECCCCC
T ss_conf 964899751468877999999999998689541533478655-5557898999999986445797699-----8426654
Q ss_pred CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCHHHCCCHHHHHHH
Q ss_conf 22100149707999437652012467799898764799868997068572113269999999859995583999999999
Q gi|254780181|r 81 VNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIALFAKESSRYVTSTLIRHLISIDADITSFVPDPVCVFL 160 (182)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~~~~~~ISST~IR~~i~~g~~i~~lVP~~V~~yI 160 (182)
.....................+....+.........++...+++...+++.+||||+||++++.|++|++|||++|++||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ISST~IRe~i~~g~~i~~~VP~~V~~yI 155 (168)
T 3f3m_A 76 VDYCEQVGAKTIIRGLRAVSDFEYELRLTSMNKKLNNEIETLYMMSSTNYSFISSSIVKEVAAYRADISEFVPPYVEKAL 155 (168)
T ss_dssp HHHHHHHTCCEEEEEECTTCCHHHHHHHHHHHHHHCTTSEEEEEECCTTTTTCCHHHHHHHHHTTCCCTTTSCHHHHHHH
T ss_pred CHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCHHHHCCHHHHHHH
T ss_conf 02255525431001323513788888899998875767647840467677602589999999849995696999999999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780181|r 161 KNIV 164 (182)
Q Consensus 161 k~~~ 164 (182)
++++
T Consensus 156 k~k~ 159 (168)
T 3f3m_A 156 KKKF 159 (168)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9985
No 9
>1yum_A 'probable nicotinate-nucleotide adenylyltransferase; alpha/beta domain; HET: CIT NCN; 1.70A {Pseudomonas aeruginosa} PDB: 1yul_A* 1yun_A*
Probab=99.97 E-value=3.7e-32 Score=210.43 Aligned_cols=165 Identities=15% Similarity=0.201 Sum_probs=118.0
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHH--CCEEEEECC-CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEE----
Q ss_conf 659996589987848999999999974--897999645-5888766578989999999997642013355441242----
Q gi|254780181|r 2 MRKAVYTGSFDPITNGHMDIIIQALSF--VEDLVIAIG-CNSVKTKGFLSIQERSELIKQSIFHFIPDSSNRVSVI---- 74 (182)
Q Consensus 2 mkigifgGsFdPiH~GHL~ia~~a~~~--~D~vii~~~-~~p~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~---- 74 (182)
||||||||||||+|+||+.+|+.|++. +|+|+|+|+ .||.|.+...+.++|..|++.++........+..+..
T Consensus 23 kkIgifgGSFdP~H~GHl~i~~~a~~~~~~d~V~~~p~~~n~~K~~~~~~~~~Rl~m~~~a~~~~~~i~vs~~E~~~~~~ 102 (242)
T 1yum_A 23 KRIGLFGGTFDPVHIGHMRSAVEMAEQFALDELRLLPNARPPHRETPQVSAAQRLAMVERAVAGVERLTVDPRELQRDKP 102 (242)
T ss_dssp CEEEEEEECCTTCCHHHHHHHHHHHHHHTCSEEEEEECCCCGGGSCTTCCHHHHHHHHHHHHTTCTTEEECCGGGGSSSS
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCC
T ss_conf 86999675857150999999999999819998999983979887876558899999987776515605850243347887
Q ss_pred --CCCCCCCCC--CCCCCCEEEEEECCCCCCHHHHHHHHHHHHH---------------------------------HCC
Q ss_conf --033333221--0014970799943765201246779989876---------------------------------479
Q gi|254780181|r 75 --SFEGLAVNL--AKDISAQVIVRGLRDMTDFDYEMRMTSVNRC---------------------------------LCP 117 (182)
Q Consensus 75 --~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------l~~ 117 (182)
+..++.... ......++++.|.|....+..|..+..+... ...
T Consensus 103 ~~t~dtL~~l~~~~~~~~~~~~iiG~D~l~~i~~W~~~~~il~~~~ilV~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (242)
T 1yum_A 103 SYTIDTLESVRAELAADDQLFMLIGWDAFCGLPTWHRWEALLDHCHIVVLQRPDADSEPPESLRDLLAARSVADPQALKG 182 (242)
T ss_dssp CCHHHHHHHHHHHSCTTCEEEEEEEHHHHTTGGGSTTGGGSTTTCEEEEEECSSSCCCCCGGGHHHHHHHBCSCGGGCCS
T ss_pred CCHHHHHHHHHHHCCCCCEEEEEECCCHHHHCCCCCCHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCHHHHHC
T ss_conf 30999999987641467517997465306433677689999626858999689864200578999999873126888737
Q ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHH
Q ss_conf 98689970685721132699999998599955839999999999999986
Q gi|254780181|r 118 EIATIALFAKESSRYVTSTLIRHLISIDADITSFVPDPVCVFLKNIVISL 167 (182)
Q Consensus 118 ~~~~i~l~~~~~~~~ISST~IR~~i~~g~~i~~lVP~~V~~yIk~~~~~~ 167 (182)
....+++...++ .+||||+||++++.|++|+++||++|.+||++.-+|.
T Consensus 183 ~~~~i~~~~~~~-~dISST~IR~~i~~g~~i~~lvp~~V~~YI~~~~LY~ 231 (242)
T 1yum_A 183 PGGQITFVWQTP-LAVSATQIRALLGAGRSVRFLVPDAVLNYIEAHHLYR 231 (242)
T ss_dssp SSCCEEEEECCC-CSCCHHHHHHHHHTTCCCBTTBCHHHHHHHHHTTTTC
T ss_pred CCCCEEEECCCC-CCCCHHHHHHHHHCCCCHHHHCCHHHHHHHHHCCCCC
T ss_conf 688589968997-4416999999998599913708999999999749999
No 10
>2h29_A Probable nicotinate-nucleotide adenylyltransferase; NADD, namnat, nmnat; HET: DND; 2.00A {Staphylococcus aureus} PDB: 2h2a_A*
Probab=99.97 E-value=6.5e-32 Score=208.98 Aligned_cols=166 Identities=16% Similarity=0.245 Sum_probs=118.4
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHC--CEEEEECC-CCCCCCCC-CCCHHHHHHHHHHHHHHHCCCCCCCCEEEC-
Q ss_conf 96599965899878489999999999748--97999645-58887665-789899999999976420133554412420-
Q gi|254780181|r 1 MMRKAVYTGSFDPITNGHMDIIIQALSFV--EDLVIAIG-CNSVKTKG-FLSIQERSELIKQSIFHFIPDSSNRVSVIS- 75 (182)
Q Consensus 1 MmkigifgGsFdPiH~GHL~ia~~a~~~~--D~vii~~~-~~p~k~~~-~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~- 75 (182)
|+|||||||||||+|+||+.++++|++.+ |+|+++|+ .||.|.+. ..+.++|..|++.+............+...
T Consensus 1 MkkI~lfgGsFdP~h~GH~~i~~~a~~~~~~d~v~~~~s~~~p~K~~~~~~s~~~R~~m~~~~~~~~~~~~v~~~e~~~~ 80 (189)
T 2h29_A 1 MKKIVLYGGQFNPIHTAHMIVASEVFHELQPDEFYFLPSFMSPLKKHHDFIDVQHRLTMIQMIIDELGFGDICDDEIKRG 80 (189)
T ss_dssp CEEEEEEEECCTTCCHHHHHHHHHHHHHHCCSEEEEEECSBCTTSCCCSSCCCHHHHHHHHHHHHHHTCCEECCHHHHHC
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEECHHHCCC
T ss_conf 97699963276837799999999999980999599997057875343355899999999975222114320100222057
Q ss_pred ---CCCCCCCC---CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH----------CCCCCEEEEECCCCCCCCCHHHHH
Q ss_conf ---33333221---00149707999437652012467799898764----------799868997068572113269999
Q gi|254780181|r 76 ---FEGLAVNL---AKDISAQVIVRGLRDMTDFDYEMRMTSVNRCL----------CPEIATIALFAKESSRYVTSTLIR 139 (182)
Q Consensus 76 ---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----------~~~~~~i~l~~~~~~~~ISST~IR 139 (182)
++..+... .......+++.|.+....+..|..+..+.... ..+.+...+..+.+..+||||+||
T Consensus 81 ~~~~t~~tl~~l~~~~p~~~~~~i~G~D~~~~l~~w~~~e~l~~~~~~~v~~R~~~~~~~~~~~~~~~~~~~~ISST~IR 160 (189)
T 2h29_A 81 GQSYTYDTIKAFKEQHKDSELYFVIGTDQYNQLEKWYQIEYLKEMVTFVVVNRDKNSQNVENAMIAIQIPRVDISSTMIR 160 (189)
T ss_dssp SBCCHHHHHHHHHHHSTTEEEEEEEEHHHHTTGGGSTTHHHHHHHCEEEEECCSSSCCCCCTTSEEECCCCBCCCHHHHH
T ss_pred CCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCHHCCCCCCEECHHHHH
T ss_conf 65301478899887688854698715616656532626999996487777668875401234210025876646789999
Q ss_pred HHHHCCCCHHHCCCHHHHHHHHHHHHH
Q ss_conf 999859995583999999999999998
Q gi|254780181|r 140 HLISIDADITSFVPDPVCVFLKNIVIS 166 (182)
Q Consensus 140 ~~i~~g~~i~~lVP~~V~~yIk~~~~~ 166 (182)
++++.|++|++|||++|.+||++..+|
T Consensus 161 ~~i~~g~~i~~lvP~~V~~yI~~~~LY 187 (189)
T 2h29_A 161 QRVSEGKSIQVLVPKSVENYIKGEGLY 187 (189)
T ss_dssp HHHHTTCCCBTTBCHHHHHHHHHHTTT
T ss_pred HHHHCCCCCHHHCCHHHHHHHHHCCCC
T ss_conf 999849990252899999999984898
No 11
>1kqn_A Nmnat, nicotinamide mononucleotide adenylyl transferase; nucleotidyltransferase superfamily; HET: NAD; 2.20A {Homo sapiens} SCOP: c.26.1.3 PDB: 1kqo_A* 1kr2_A* 1kku_A 1gzu_A*
Probab=99.96 E-value=6.9e-30 Score=196.92 Aligned_cols=169 Identities=18% Similarity=0.174 Sum_probs=116.5
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHH--------CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 59996589987848999999999974--------8979996455888766578989999999997642013355441242
Q gi|254780181|r 3 RKAVYTGSFDPITNGHMDIIIQALSF--------VEDLVIAIGCNSVKTKGFLSIQERSELIKQSIFHFIPDSSNRVSVI 74 (182)
Q Consensus 3 kigifgGsFdPiH~GHL~ia~~a~~~--------~D~vii~~~~~p~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~ 74 (182)
.|+||||||||||+|||.+|+.|++. +|++++.|+++|++++...|.++|++|+++|+........+..+..
T Consensus 9 ~vll~~GSFdP~H~GHl~ia~~a~~~l~~~~~~~l~~~~~~P~~~~~~K~~~~s~~~Rl~Ml~lA~~~~~~~~v~~~E~~ 88 (279)
T 1kqn_A 9 VVLLACGSFNPITNMHLRLFELAKDYMNGTGRYTVVKGIISPVGDAYKKKGLIPAYHRVIMAELATKNSKWVEVDTWESL 88 (279)
T ss_dssp EEEEEEECCTTCCHHHHHHHHHHHHHHHHTSSEEEEEEEEEECCGGGCCTTCCCHHHHHHHHHHHTTTCSSEEECCTGGG
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECHHHHH
T ss_conf 89996245373429999999999999734256041579980589987688899999999999999844686797216861
Q ss_pred CC----CCCCCCC-------------------------------------------CCCCCCEEEEEECCCCCCHHHHHH
Q ss_conf 03----3333221-------------------------------------------001497079994376520124677
Q gi|254780181|r 75 SF----EGLAVNL-------------------------------------------AKDISAQVIVRGLRDMTDFDYEMR 107 (182)
Q Consensus 75 ~~----~~~~~~~-------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 107 (182)
.. +..+... ......++++.|.|....|..|..
T Consensus 89 ~~~~syt~~tL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~fiiG~D~l~~~~~~~~ 168 (279)
T 1kqn_A 89 QKEWKETLKVLRHHQEKLEASDCDHQQNSPTLERPGRKRKWTETQDSSQKKSLEPKTKAVPKVKLLCGADLLESFAVPNL 168 (279)
T ss_dssp CSSCCCHHHHHHHHHHHHTC--------------------------------------CCCEEEEEEEHHHHHHTTSTTT
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEEEEEECCHHHHCCCCCC
T ss_conf 78886189999999998421221001255422333322344322201211012334588841899986253645424466
Q ss_pred H-----HHHHH----------------------HHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCHHHCCCHHHHHHH
Q ss_conf 9-----98987----------------------64799868997068572113269999999859995583999999999
Q gi|254780181|r 108 M-----TSVNR----------------------CLCPEIATIALFAKESSRYVTSTLIRHLISIDADITSFVPDPVCVFL 160 (182)
Q Consensus 108 ~-----~~~~~----------------------~l~~~~~~i~l~~~~~~~~ISST~IR~~i~~g~~i~~lVP~~V~~yI 160 (182)
| ..+.. .+......+.+....+..+||||+||+++++|++|++|||++|.+||
T Consensus 169 wk~~~~e~il~~~~liV~~R~g~~~~~~~~~~~~l~~~~~~i~~i~~~~~~dISST~IR~~l~~g~~i~~lvp~~V~~YI 248 (279)
T 1kqn_A 169 WKSEDITQIVANYGLICVTRAGNDAQKFIYESDVLWKHRSNIHVVNEWIANDISSTKIRRALRRGQSIRYLVPDLVQEYI 248 (279)
T ss_dssp SCHHHHHHHHHHTCEEEEESCHHHHHHHHHTCHHHHHTGGGEEEEECCSCCCCCHHHHHHHHHTTCCCBTTBCHHHHHHH
T ss_pred CCCCCHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCHHHCCHHHHHHH
T ss_conf 65217999970085899968999868742008888645498799768886671899999999869993263899999999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999865457
Q gi|254780181|r 161 KNIVISLVKYD 171 (182)
Q Consensus 161 k~~~~~~~k~~ 171 (182)
++..+|.....
T Consensus 249 ~~~~LY~~~~~ 259 (279)
T 1kqn_A 249 EKHNLYSSESE 259 (279)
T ss_dssp HHHTCCSHHHH
T ss_pred HHCCCCCCCCC
T ss_conf 98399999999
No 12
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrolase; two individual domains; HET: APR NAD; 2.60A {Synechocystis SP}
Probab=99.95 E-value=1.1e-29 Score=195.63 Aligned_cols=151 Identities=19% Similarity=0.244 Sum_probs=94.3
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECC-CC-CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCC
Q ss_conf 9659996589987848999999999974897999645-58-887665789899999999976420133554412420333
Q gi|254780181|r 1 MMRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIG-CN-SVKTKGFLSIQERSELIKQSIFHFIPDSSNRVSVISFEG 78 (182)
Q Consensus 1 MmkigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~-~~-p~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~~~~ 78 (182)
+++||||||||||+|+||+.++++|++++|+|+|+++ .+ +++.+.++|.++|.+|++.++..................
T Consensus 6 ~~~igl~~GtFdP~H~GHl~li~~a~~~~d~viV~v~s~~~~~~~~npfs~~eR~~Mi~~a~~~~~~~~v~~~~~~d~~~ 85 (341)
T 2qjo_A 6 KYQYGIYIGRFQPFHLGHLRTLNLALEKAEQVIIILGSHRVAADTRNPWRSPERMAMIEACLSPQILKRVHFLTVRDWLY 85 (341)
T ss_dssp SEEEEEEEECCTTCCHHHHHHHHHHHHHEEEEEEEEEEETCCCCSSSCSCHHHHHHHHHTTSCHHHHTTEEEEEEECCTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 21389998664877789999999999779989999816866888889989999999999987773897699996886666
Q ss_pred C---CCCC--------CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 3---3221--------0014970799943765201246779989876479986899706857211326999999985999
Q gi|254780181|r 79 L---AVNL--------AKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIALFAKESSRYVTSTLIRHLISIDAD 147 (182)
Q Consensus 79 ~---~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~~~~~~ISST~IR~~i~~g~~ 147 (182)
. +... .........+ +. +.........+.++.+.+. .+....||||.||++++.|++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~i~---~~~~~~ISsT~IR~~i~~g~~ 153 (341)
T 2qjo_A 86 SDNLWLAAVQQQVLKITGGSNSVVVL-GH--------RKDASSYYLNLFPQWDYLE---TGHYPDFSSTAIRGAYFEGKE 153 (341)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSCEEEE-EC--------CCSGGGGGGGSCTTSEEEE---CCCCTTCCHHHHHHHHHHTCG
T ss_pred CHHHHHHHHHHCCCEEEECCCCCEEE-EE--------HHHHHHHHHHCCCCEEEEE---CCCCCCEEHHHHHHHHHCCCC
T ss_conf 53888999986386589616770233-00--------1112024464079758986---588897514165468766997
Q ss_pred --HHHCCCHHHHHHHHHH
Q ss_conf --5583999999999999
Q gi|254780181|r 148 --ITSFVPDPVCVFLKNI 163 (182)
Q Consensus 148 --i~~lVP~~V~~yIk~~ 163 (182)
|+.|||++|.+||+|.
T Consensus 154 ~~~~~lVP~~V~~yI~e~ 171 (341)
T 2qjo_A 154 GDYLDKVPPAIADYLQTF 171 (341)
T ss_dssp GGTTTTSCHHHHHHHHHH
T ss_pred CCHHHHCCHHHHHHHHHH
T ss_conf 747886898999999986
No 13
>1nup_A FKSG76; NAD biosynthesis, cytoplasm, mitochondria, pyridine adenylyltransferase, enzyme catalysi; HET: NMN; 1.90A {Homo sapiens} SCOP: c.26.1.3 PDB: 1nuq_A* 1nur_A 1nus_A* 1nut_A* 1nuu_A*
Probab=99.95 E-value=3.1e-28 Score=187.09 Aligned_cols=168 Identities=14% Similarity=0.151 Sum_probs=115.1
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHC--CEE------EEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 599965899878489999999999748--979------996455888766578989999999997642013355441242
Q gi|254780181|r 3 RKAVYTGSFDPITNGHMDIIIQALSFV--EDL------VIAIGCNSVKTKGFLSIQERSELIKQSIFHFIPDSSNRVSVI 74 (182)
Q Consensus 3 kigifgGsFdPiH~GHL~ia~~a~~~~--D~v------ii~~~~~p~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~ 74 (182)
.|+||||||||||+||+.+|+.|.+.+ |++ ++.|.++++++....+.++|++|++.|+...........+..
T Consensus 7 ~vlv~~GSFdP~H~GHl~i~~~a~~~~~~~~~~~~~~~~~~p~~~~~~k~~~~~~~~Rl~Ml~la~~~~~~~~v~~~E~~ 86 (252)
T 1nup_A 7 VVLLACGSFNPITNMHLRMFEVARDHLHQTGMYQVIQGIISPVNDTYGKKDLAASHHRVAMARLALQTSDWIRVDPWESE 86 (252)
T ss_dssp EEEEEEECCTTCCHHHHHHHHHHHHHHHHTTSEEEEEEEEEECCTTCSSSCCCCHHHHHHHHHHHGGGCSSEEECCHHHH
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEECHHHHH
T ss_conf 79997055787589999999999998674665567777875888987678889999999999999860577242216664
Q ss_pred CC----CCCCCCC------------------------CCCCCCEEEEEECCCCCCHHHHHHH-----HHHHH--------
Q ss_conf 03----3333221------------------------0014970799943765201246779-----98987--------
Q gi|254780181|r 75 SF----EGLAVNL------------------------AKDISAQVIVRGLRDMTDFDYEMRM-----TSVNR-------- 113 (182)
Q Consensus 75 ~~----~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-------- 113 (182)
.. +..+... ......++++.|.|....+..|..| ..+.+
T Consensus 87 ~~~~s~Ti~tl~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~fiiG~D~l~~l~~wk~~~~~~~e~il~~~~liv~~ 166 (252)
T 1nup_A 87 QAQWMETVKVLRHHHSKLLRSPPQMEGPDHGKALFSTPAAVPELKLLCGADVLKTFQTPNLWKDAHIQEIVEKFGLVCVG 166 (252)
T ss_dssp SSSCCCHHHHHHHHHHHHC--------------------CCCEEEEEEEHHHHHHTTSTTTSCHHHHHHHHHHTCEEEEC
T ss_pred CCCCEEHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCEEEEECCHHHHHHHCCCCCCHHHHHHHHHHCCEEEEC
T ss_conf 37980299999999998243343212210011110146876527888563687655203642215699999859999976
Q ss_pred --------------HHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf --------------647998689970685721132699999998599955839999999999999986545
Q gi|254780181|r 114 --------------CLCPEIATIALFAKESSRYVTSTLIRHLISIDADITSFVPDPVCVFLKNIVISLVKY 170 (182)
Q Consensus 114 --------------~l~~~~~~i~l~~~~~~~~ISST~IR~~i~~g~~i~~lVP~~V~~yIk~~~~~~~k~ 170 (182)
.+......+++...+...+||||+||++++.|++|++|||++|.+||++..+|.+..
T Consensus 167 R~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ISST~IR~~i~~g~~i~~lvp~~V~~YI~~~~LY~~~~ 237 (252)
T 1nup_A 167 RVSHDPKGYIAESPILRMHQHNIHLAKEPVQNEISATYIRRALGQGQSVKYLIPDAVITYIKDHGLYTKGS 237 (252)
T ss_dssp CTTCCHHHHHHHCHHHHHTGGGEEEECCCSCCCCCHHHHHHHHHTTCCCBTTBCHHHHHHHHHTTCSCC--
T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCHHHCCHHHHHHHHHCCCCCCCC
T ss_conf 89866677776667764067878997688756687999999998599932638999999999749978998
No 14
>2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltransferase; NAD, nucleotidyltransferase, pyridine nucleotide biosynthesis; HET: NXX; 1.70A {Bacillus anthracis} PDB: 3dv2_A 3mla_A* 3hfj_A* 3mlb_A* 3mmx_A* 3e27_A* 2qtn_A* 2qtm_A*
Probab=99.94 E-value=1.3e-27 Score=183.32 Aligned_cols=167 Identities=13% Similarity=0.044 Sum_probs=95.9
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHC--CEEEEECCCCCCCCCCC-CCHHH-HHHHHHHHHHHHCCCCCCCCE----
Q ss_conf 96599965899878489999999999748--97999645588876657-89899-999999976420133554412----
Q gi|254780181|r 1 MMRKAVYTGSFDPITNGHMDIIIQALSFV--EDLVIAIGCNSVKTKGF-LSIQE-RSELIKQSIFHFIPDSSNRVS---- 72 (182)
Q Consensus 1 MmkigifgGsFdPiH~GHL~ia~~a~~~~--D~vii~~~~~p~k~~~~-~s~e~-r~~m~~~a~~~~~~~~~~~~~---- 72 (182)
|+|||||||||||||+||+.++++|++.+ |+|+++++.+|.+.... ..... +..++................
T Consensus 1 Mkki~if~GsFdP~h~GHl~i~~~a~~~~~~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (189)
T 2qtr_A 1 MRKIGIIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPPHKQGRNITSVESRLQMLELATEAEEHFSICLEELSRK 80 (189)
T ss_dssp CCEEEEEEECCSSCCHHHHC-CHHHHHHTTCSEEEEEECSSCTTCTTSCCCCHHHHHHHHHHHHTTCTTEEECCTGGGSC
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHCC
T ss_conf 96699966476717499999999999984999899996245663322115589999999987650455302200233236
Q ss_pred EECCCCCCCCCC---CCCCCEEEEEECCCCCCHHHHHHHHHHHHHH----------CCCCCEEEEECCCCCCCCCHHHHH
Q ss_conf 420333332210---0149707999437652012467799898764----------799868997068572113269999
Q gi|254780181|r 73 VISFEGLAVNLA---KDISAQVIVRGLRDMTDFDYEMRMTSVNRCL----------CPEIATIALFAKESSRYVTSTLIR 139 (182)
Q Consensus 73 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----------~~~~~~i~l~~~~~~~~ISST~IR 139 (182)
...++....... .......+..+.+....+..+..+....... ...........+....+||||+||
T Consensus 81 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR 160 (189)
T 2qtr_A 81 GPSYTYDTMLQLTKKYPDVQFHFIIGGDMVEYLPKWYNIEALLDLVTFVGVARPGYKLRTPYPITTVEIPEFAVSSSLLR 160 (189)
T ss_dssp SCCCHHHHHHHHHHHCTTCEEEEEEEHHHHHHGGGSTTHHHHTTTCEEEEECCTTCCCCCSSCCEEECCCCCCCCHHHHH
T ss_pred CCEEEHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCEEECCCCCCCCCHHHHH
T ss_conf 87021788999998777755032202057778879999999986434100037542212332035404666740799999
Q ss_pred HHHHCCCCHHHCCCHHHHHHHHHHHHHH
Q ss_conf 9998599955839999999999999986
Q gi|254780181|r 140 HLISIDADITSFVPDPVCVFLKNIVISL 167 (182)
Q Consensus 140 ~~i~~g~~i~~lVP~~V~~yIk~~~~~~ 167 (182)
++++.|++|++|||++|.+||++..+|.
T Consensus 161 ~~~~~~~~~~~~vp~~V~~yI~~~~LY~ 188 (189)
T 2qtr_A 161 ERYKEKKTCKYLLPEKVQVYIERNGLYE 188 (189)
T ss_dssp HHHHTTCCCTTTSCHHHHHHHHHTTGGG
T ss_pred HHHHCCCCCHHHCCHHHHHHHHHCCCCC
T ss_conf 9998399902508999999999828988
No 15
>1ej2_A Nicotinamide mononucleotide adenylyltransferase; dinucleotide binding fold, structural genomics, PSI; HET: NAD; 1.90A {Methanothermobacterthermautotrophicus} SCOP: c.26.1.3 PDB: 1m8g_A* 1hyb_A* 1m8j_A* 1m8f_A* 1m8k_A*
Probab=99.94 E-value=5.6e-27 Score=179.57 Aligned_cols=153 Identities=18% Similarity=0.184 Sum_probs=96.8
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCC--CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCC
Q ss_conf 965999658998784899999999997489799964558--887665789899999999976420133554412420333
Q gi|254780181|r 1 MMRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCN--SVKTKGFLSIQERSELIKQSIFHFIPDSSNRVSVISFEG 78 (182)
Q Consensus 1 MmkigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~--p~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~~~~ 78 (182)
|+.+|||||||||+|+||+.++++|++.+|+++++++.. ++......+.++|.+|++.+...................
T Consensus 2 ~~~~gl~~G~FdP~H~GH~~l~~~a~~~~~~v~v~i~~~~~~~~~~~~~~~~~r~~~i~~~l~~~~~~~~~~~~~~~~~~ 81 (181)
T 1ej2_A 2 MTMRGLLVGRMQPFHRGHLQVIKSILEEVDELIICIGSAQLSHSIRDPFTAGERVMMLTKALSENGIPASRYYIIPVQDI 81 (181)
T ss_dssp --CEEEEEECCTTCCHHHHHHHHHHTTTCSEEEEEECSTTCCSSSSSCSCHHHHHHHHHHHHHHTTCCGGGEEEEECCCC
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCH
T ss_conf 71799998646989999999999999977998899833666777554430999999999867654886354565056522
Q ss_pred C----CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCHHHCCCH
Q ss_conf 3----322100149707999437652012467799898764799868997068572113269999999859995583999
Q gi|254780181|r 79 L----AVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIALFAKESSRYVTSTLIRHLISIDADITSFVPD 154 (182)
Q Consensus 79 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~~~~~~ISST~IR~~i~~g~~i~~lVP~ 154 (182)
. +............+. +..+........ ..+.+.+. ........||||.||+++..|++|++|||+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~ISST~IR~~i~~g~~~~~lvP~ 151 (181)
T 1ej2_A 82 ECNALWVGHIKMLTPPFDRV-------YSGNPLVQRLFS--EDGYEVTA-PPLFYRDRYSGTEVRRRMLDDGDWRSLLPE 151 (181)
T ss_dssp SCHHHHHHHHHHHSCCCSEE-------ECCCHHHHHHHH--HTTCCEEC-CCCSSTTTSSHHHHHHHHHHTCCCGGGSCH
T ss_pred HHHHHHHHHHHHHCCCEEEE-------ECCHHHHHHHHH--HCCCEEEE-CCCCCCCCCCHHHHHHHHHCCCCHHHHCCH
T ss_conf 46788999998743532699-------865699999887--06984773-364234667769999999859984797999
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|254780181|r 155 PVCVFLKNI 163 (182)
Q Consensus 155 ~V~~yIk~~ 163 (182)
+|++||++.
T Consensus 152 ~v~~yI~~~ 160 (181)
T 1ej2_A 152 SVVEVIDEI 160 (181)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHC
T ss_conf 999999987
No 16
>1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural genomics; HET: ATP; 2.00A {Methanocaldococcus jannaschii} SCOP: c.26.1.3
Probab=99.94 E-value=1.2e-26 Score=177.53 Aligned_cols=152 Identities=18% Similarity=0.211 Sum_probs=96.5
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCC--CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC-EEECCCC
Q ss_conf 659996589987848999999999974897999645588--8766578989999999997642013355441-2420333
Q gi|254780181|r 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNS--VKTKGFLSIQERSELIKQSIFHFIPDSSNRV-SVISFEG 78 (182)
Q Consensus 2 mkigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p--~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~-~~~~~~~ 78 (182)
|| |+|||||||+|+||+.++++|++.+|+++|+++.++ ++....++.++|.+|++.+............ .......
T Consensus 1 Mk-gi~~GsFdP~H~GH~~li~~a~~~~d~v~v~~~~~~~~~~~~~~~~~~~R~~mi~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T 1f9a_A 1 LR-GFIIGRFQPFHKGHLEVIKKIAEEVDEIIIGIGSAQKSHTLENPFTAGERILMITQSLKDYDLTYYPIPIKDIEFNS 79 (168)
T ss_dssp CE-EEEEECCTTCCHHHHHHHHHHTTTCSEEEEEECSTTCCSSSSCCSCHHHHHHHHHHHHTTSSCEEEEEECCCCSCGG
T ss_pred CE-EEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHH
T ss_conf 96-89952459899999999999999789748980478601367888899999999999987679608984046642077
Q ss_pred CCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCHHHCCCHHHHH
Q ss_conf 33221001497079994376520124677998987647998689970685721132699999998599955839999999
Q gi|254780181|r 79 LAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIALFAKESSRYVTSTLIRHLISIDADITSFVPDPVCV 158 (182)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~~~~~~ISST~IR~~i~~g~~i~~lVP~~V~~ 158 (182)
.+..+.......+.+.... +.......+ ..+.+.. .........||||.||++++.|++|+++||++|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~--~~~~~v~-~~~~~~~~~ISST~IR~~i~~g~~~~~~vP~~V~~ 149 (168)
T 1f9a_A 80 IWVSYVESLTPPFDIVYSG-------NPLVRVLFE--ERGYEVK-RPEMFNRKEYSGTEIRRRMLNGEKWEHLVPKAVVD 149 (168)
T ss_dssp GHHHHHHHHSCCCSEEECC-------CHHHHHHHH--HTTCEEE-CCCCCSTTTSSHHHHHHHHHHTCCCGGGSCHHHHH
T ss_pred HHHHHHHHHCCCEEEEECC-------CHHHHHHHH--CCCCEEE-EECCCCCCCCCHHHHHHHHHCCCCHHHHCCHHHHH
T ss_conf 8999998725867999877-------099998876--4898699-83244666766799999998599867957999999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780181|r 159 FLKNIV 164 (182)
Q Consensus 159 yIk~~~ 164 (182)
||++..
T Consensus 150 ~i~~~~ 155 (168)
T 1f9a_A 150 VIKEIK 155 (168)
T ss_dssp HHHHHT
T ss_pred HHHHCC
T ss_conf 999869
No 17
>1k4m_A NAMN adenylyltransferase; nucleotidyltransferase; HET: NAD CIT; 1.90A {Escherichia coli} SCOP: c.26.1.3 PDB: 1k4k_A*
Probab=99.93 E-value=4e-26 Score=174.51 Aligned_cols=165 Identities=14% Similarity=0.167 Sum_probs=94.5
Q ss_pred CCEE-EEECCCCCCCCHHHHHHHHHHHHH--CCEEEEECCCCCCC-CCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECC
Q ss_conf 9659-996589987848999999999974--89799964558887-6657898999999999764201335544124203
Q gi|254780181|r 1 MMRK-AVYTGSFDPITNGHMDIIIQALSF--VEDLVIAIGCNSVK-TKGFLSIQERSELIKQSIFHFIPDSSNRVSVISF 76 (182)
Q Consensus 1 Mmki-gifgGsFdPiH~GHL~ia~~a~~~--~D~vii~~~~~p~k-~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~~ 76 (182)
|+++ |||||||||+|+||+.++++|++. +|+|+++|+.++++ .........+..++..+.................
T Consensus 1 ~~~~~ai~gGSFNP~h~gHl~~~~~a~~~~~~d~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (213)
T 1k4m_A 1 MKSLQALFGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPPHRPQPEANSVQRKHMLELAIADKPLFTLDERELKRN 80 (213)
T ss_dssp CCCCEEEEEECCTTCCHHHHHHHHHHHHHHTCSCEEEEECSSCTTSCCCSSCHHHHHHHHHHHHTTCTTEEECCHHHHCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHCCC
T ss_conf 99767997056082649999999999998099999999948885334556209999999866664234420110001146
Q ss_pred C--------CCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHH---------------------------HHHCC----
Q ss_conf 3--------33322100149707999437652012467799898---------------------------76479----
Q gi|254780181|r 77 E--------GLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVN---------------------------RCLCP---- 117 (182)
Q Consensus 77 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~l~~---- 117 (182)
. .................+.+....+..|..+.... .....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~R~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (213)
T 1k4m_A 81 APSYTAQTLKEWRQEQGPDVPLAFIIGQDSLLTFPTWYEYETILDNAHLIVCRRPGYPLEMAQPQYQQWLEDHLTHNPED 160 (213)
T ss_dssp SCCCHHHHHHHHHHHHCTTSCEEEEEEHHHHHHGGGSTTHHHHHHHCEEEEECCTTCCSSCSSHHHHHHHHHHBCSCTTH
T ss_pred CCCCEEEHHHHHHHHCCCCCEEEECCCCHHHHCCCHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77510001666663127774488415730010010155399983787399993799636667899999998630000234
Q ss_pred ----CCCEEEEECCCCCCCCCHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHH
Q ss_conf ----9868997068572113269999999859995583999999999999998
Q gi|254780181|r 118 ----EIATIALFAKESSRYVTSTLIRHLISIDADITSFVPDPVCVFLKNIVIS 166 (182)
Q Consensus 118 ----~~~~i~l~~~~~~~~ISST~IR~~i~~g~~i~~lVP~~V~~yIk~~~~~ 166 (182)
....+.. ...+..+||||.||++++.|++|+.|||++|.+||++.-+|
T Consensus 161 ~~~~~~~~~~~-~~~~~~~ISST~IR~~l~~~~~i~~lvp~~V~~yI~~~~LY 212 (213)
T 1k4m_A 161 LHLQPAGKIYL-AETPWFNISATIIRERLQNGESCEDLLPEPVLTYINQQGLY 212 (213)
T ss_dssp HHHSSSCCEEE-ECCCCCCCCHHHHHHHHHTTCCCTTTSCHHHHHHHHHHTTT
T ss_pred HHCCCCCEEEE-ECCCCCCCCHHHHHHHHHCCCCCHHHCCHHHHHHHHHCCCC
T ss_conf 31277864999-26987870999999999849992150899999999974999
No 18
>1kam_A Deamido-NAD(+), nicotinate-nucleotide adenylyltransferase; rossman fold; 2.10A {Bacillus subtilis} SCOP: c.26.1.3 PDB: 1kaq_A*
Probab=99.93 E-value=5.2e-26 Score=173.81 Aligned_cols=165 Identities=16% Similarity=0.155 Sum_probs=94.5
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHC--CEEEEECCCCCCCCCCC--CCHHHHHHHHHHHHHHHCCCCCCCCEEE---
Q ss_conf 6599965899878489999999999748--97999645588876657--8989999999997642013355441242---
Q gi|254780181|r 2 MRKAVYTGSFDPITNGHMDIIIQALSFV--EDLVIAIGCNSVKTKGF--LSIQERSELIKQSIFHFIPDSSNRVSVI--- 74 (182)
Q Consensus 2 mkigifgGsFdPiH~GHL~ia~~a~~~~--D~vii~~~~~p~k~~~~--~s~e~r~~m~~~a~~~~~~~~~~~~~~~--- 74 (182)
+|||||||||||+|+||+.+|++|++.+ |+|++.++.++...... .....+..++...............+..
T Consensus 7 kkIaifgGSFdP~H~GH~~ii~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 86 (194)
T 1kam_A 7 KKIGIFGGTFDPPHNGHLLMANEVLYQAGLDEIWFMPNQIPPHKQNEDYTDSFHRVEMLKLAIQSNPSFKLELVEMEREG 86 (194)
T ss_dssp CEEEEEEECCSSCCHHHHHHHHHHHHHTTCSEEEEEECCCC---------CHHHHHHHHHHHHTTCTTEEECCGGGSTTC
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCC
T ss_conf 77999564758487999999999999859978999963566633342057999999987664227764200047876468
Q ss_pred -CCCCCC---CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC----------CCCCEEEEECCCCCCCCCHHHHHH
Q ss_conf -033333---221001497079994376520124677998987647----------998689970685721132699999
Q gi|254780181|r 75 -SFEGLA---VNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLC----------PEIATIALFAKESSRYVTSTLIRH 140 (182)
Q Consensus 75 -~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----------~~~~~i~l~~~~~~~~ISST~IR~ 140 (182)
..+... ............+.+.+....+..+..+........ ..........+....+||||+||+
T Consensus 87 ~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR~ 166 (194)
T 1kam_A 87 PSYTFDTVSLLKQRYPNDQLFFIIGADMIEYLPKWYKLDELLNLIQFIGVKRPGFHVETPYPLLFADVPEFEVSSTMIRE 166 (194)
T ss_dssp CCSHHHHHHHHHHHSTTSEEEEEEETTTTTTCCCCHHHHHHHHHSEEEEEECSSCCCCCSSCCEEEECCCBCCCHHHHHH
T ss_pred CEEEHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCHHHHHH
T ss_conf 63645567789986488640000116678887624049999997157754375433000101001456556566799999
Q ss_pred HHHCCCCHHHCCCHHHHHHHHHHHHH
Q ss_conf 99859995583999999999999998
Q gi|254780181|r 141 LISIDADITSFVPDPVCVFLKNIVIS 166 (182)
Q Consensus 141 ~i~~g~~i~~lVP~~V~~yIk~~~~~ 166 (182)
+++.|++|++|||++|.+||++..+|
T Consensus 167 ~i~~~~~~~~~vP~~V~~yI~~~~LY 192 (194)
T 1kam_A 167 RFKSKKPTDYLIPDKVKKYVEENGLY 192 (194)
T ss_dssp HHHHTCCCTTTSCHHHHHHHHHTTCS
T ss_pred HHHCCCCCHHHCCHHHHHHHHHCCCC
T ss_conf 99839990374899999999983898
No 19
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B
Probab=99.85 E-value=1.7e-21 Score=146.92 Aligned_cols=150 Identities=20% Similarity=0.226 Sum_probs=92.5
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCC--CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCC
Q ss_conf 96599965899878489999999999748979996455--8887665789899999999976420133554412420333
Q gi|254780181|r 1 MMRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGC--NSVKTKGFLSIQERSELIKQSIFHFIPDSSNRVSVISFEG 78 (182)
Q Consensus 1 MmkigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~--~p~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~~~~ 78 (182)
|.++|||+|||||+|+||+.++++|++.+|+|+|++++ .++..++++|.++|.+|++.+......... .........
T Consensus 6 ~~~~~v~~GrFqP~H~GH~~~i~~a~~~~d~viv~vgs~~~~~~~~nPft~~eR~~mi~~~l~~~~~~~~-~v~~~~~~D 84 (352)
T 2qjt_B 6 MYDISVFIGRFQPFHKGHLHNIIIALQNSKKVIINIGSCFNTPNIKNPFSFEQRKQMIESDLQVAGIDLD-TVVIEPLAD 84 (352)
T ss_dssp CEEEEEEEECCTTCCHHHHHHHHHHHHSEEEEEEEEEEESCCCCSSSCSCHHHHHHHHHHHHHHTTCCGG-GEEEEEEEC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC-EEEEECCCC
T ss_conf 5668999963599877899999999855996999994699888878998999999999999886278755-699807786
Q ss_pred CCCC------CCC-----C--CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCC
Q ss_conf 3322------100-----1--49707999437652012467799898764799868997068572113269999999859
Q gi|254780181|r 79 LAVN------LAK-----D--ISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIALFAKESSRYVTSTLIRHLISID 145 (182)
Q Consensus 79 ~~~~------~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~~~~~~ISST~IR~~i~~g 145 (182)
.... ... . ......+.+. ......+.....++.+.+.+ +.+..||||.||+++..|
T Consensus 85 ~~~~~~~w~~~v~~~~~~~~~~~~~~~~~~~--------~~d~~s~~l~~~p~~~~i~~---~~~~~iSaT~iR~~~~~g 153 (352)
T 2qjt_B 85 YFYQEQKWQDELRKNVYKHAKNNNSIAIVGH--------IKDSSSYYIRSFPEWDYIGV---DNYKNFNATEFRQKFYNG 153 (352)
T ss_dssp CTTCHHHHHHHHHHHHTTTSCSSCCEEECCB--------SSSSHHHHHHHCTTSEECCB---CCTTCCCHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHCCHHHCCCCCCCEEEEE--------EECCCCEEECCCCCEEEECC---CCCCCEECHHHHHHHHCC
T ss_conf 5454078899998602433103677327999--------74333302003886255226---553634341789999706
Q ss_pred CCHHH-----CCCHHHHHHHHH
Q ss_conf 99558-----399999999999
Q gi|254780181|r 146 ADITS-----FVPDPVCVFLKN 162 (182)
Q Consensus 146 ~~i~~-----lVP~~V~~yIk~ 162 (182)
..+.. .+|.+|.+++.+
T Consensus 154 ~~~~~~~~~~~~p~~v~~~L~~ 175 (352)
T 2qjt_B 154 IISKQYMCSNDPKLGTYNFLTK 175 (352)
T ss_dssp CCCGGGCSCSSTTSHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHH
T ss_conf 8762111202575769999999
No 20
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide kinase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.77 E-value=9.5e-20 Score=136.51 Aligned_cols=148 Identities=17% Similarity=0.164 Sum_probs=82.9
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCC---------CCCCCCHHHHHHHHHHHHHHHCCCCCCCCE
Q ss_conf 65999658998784899999999997489799964558887---------665789899999999976420133554412
Q gi|254780181|r 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVK---------TKGFLSIQERSELIKQSIFHFIPDSSNRVS 72 (182)
Q Consensus 2 mkigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p~k---------~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~ 72 (182)
+||||+||+|||+|+||+.++++|++.+|+++++++.+|++ .....+.++|.+|++.+.............
T Consensus 2 Kkigv~iG~FDpvH~GH~~li~~A~~~~d~l~vvi~~~~~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~~~~~~~~~ 81 (365)
T 1lw7_A 2 KKVGVIFGKFYPVHTGHINMIYEAFSKVDELHVIVCSDTVRDLKLFYDSKMKRMPTVQDRLRWMQQIFKYQKNQIFIHHL 81 (365)
T ss_dssp CCEEEEEECCSSCCHHHHHHHHHHHTTCSEEEEEEEECHHHHHHHHHHTTCSSCCCHHHHHHHHHHHTSTTTTTEEEEEE
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 73899987269878899999999999679868999857986533465545466899999999999847776755999436
Q ss_pred EE----CCCCCCCCCCCCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 42----0333332210014970799943765201246-779989876479986899706857211326999999985999
Q gi|254780181|r 73 VI----SFEGLAVNLAKDISAQVIVRGLRDMTDFDYE-MRMTSVNRCLCPEIATIALFAKESSRYVTSTLIRHLISIDAD 147 (182)
Q Consensus 73 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~i~l~~~~~~~~ISST~IR~~i~~g~~ 147 (182)
.. .....+.....................|..+ .....+.+.+ +.+.+++..+.....||||.||+.+.. +
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~fg~e~~~~~~~~~~~--g~~~v~v~~~~~~~~ISST~IR~~~~~--~ 157 (365)
T 1lw7_A 82 VEDGIPSYPNGWQSWSEAVKTLFHEKHFEPSIVFSSEPQDKAPYEKYL--GLEVSLVDPDRTFFNVSATKIRTTPFQ--Y 157 (365)
T ss_dssp ECSSSCCTTSCHHHHHHHHHHHHHHTTCCCSEEECSCGGGHHHHHHHT--CCEEECCCSSCCSSCCCHHHHHHCGGG--G
T ss_pred CHHHCCCCHHHHHHHHHHHCCCCEEEECCCCEEEEECCCCHHHHHHHC--CCEEEEECCCCCCCCCCCHHHCCCHHH--C
T ss_conf 433222581778999997267875996488789985603079999755--993899625668998656032218454--3
Q ss_pred HHHCCC
Q ss_conf 558399
Q gi|254780181|r 148 ITSFVP 153 (182)
Q Consensus 148 i~~lVP 153 (182)
|.++-|
T Consensus 158 ~~~~~~ 163 (365)
T 1lw7_A 158 WKFIPK 163 (365)
T ss_dssp GGGSCT
T ss_pred CCCCCC
T ss_conf 443675
No 21
>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus}
Probab=99.66 E-value=2.2e-17 Score=122.37 Aligned_cols=134 Identities=16% Similarity=0.149 Sum_probs=77.1
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCC--EEEEECCCCC--CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCC
Q ss_conf 65999658998784899999999997489--7999645588--8766578989999999997642013355441242033
Q gi|254780181|r 2 MRKAVYTGSFDPITNGHMDIIIQALSFVE--DLVIAIGCNS--VKTKGFLSIQERSELIKQSIFHFIPDSSNRVSVISFE 77 (182)
Q Consensus 2 mkigifgGsFdPiH~GHL~ia~~a~~~~D--~vii~~~~~p--~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~~~ 77 (182)
||+++ ||||||+|.||+.++++|++.++ .++++++..+ .|.....+.++|.++++...................
T Consensus 1 MkV~l-gG~FD~~H~GH~~ll~~A~~~~~~~~i~~~~~~~~~~~k~~~~~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~- 78 (148)
T 3do8_A 1 MKVAL-GGTFEPLHEGHKKLIDVAIKLGGRDITIGVTSDRMARARIRSVLPFAIRAENVKRYVMRKYGFEPEIVKITNP- 78 (148)
T ss_dssp CCEEE-EECCSSCCHHHHHHHHHHHHHHTTCEEEEEECHHHHHHHSCCCSCHHHHHHHHHHHHHHHHSSCCEEEEECST-
T ss_pred CEEEE-ECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH-
T ss_conf 98999-3673884889999999999848972997027845652000000005789999997644246742111001103-
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCC--EEEEECCCCCCCCCHHHHHHHH
Q ss_conf 3332210014970799943765201246779989876479986--8997068572113269999999
Q gi|254780181|r 78 GLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIA--TIALFAKESSRYVTSTLIRHLI 142 (182)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~i~l~~~~~~~~ISST~IR~~i 142 (182)
............+.+.+.....+.+........ .+..+ .+.+..+.....||||+||+++
T Consensus 79 ---~~~~~~~~~~~~v~g~d~~~~~~~~~~~~~~~~--~~~~~i~~v~~~~~~~~~~ISST~IR~~~ 140 (148)
T 3do8_A 79 ---YGKTLDVDFEYLVVSPETYEMALKINQKREELG--KRKITIVKVDWMMAEDGKPISSTRIKRGE 140 (148)
T ss_dssp ---TTTTTTSCCSEEEECTTTHHHHHHHHHHHHHHT--CCCCEEEEEECCC-------CCCCCCCSC
T ss_pred ---HHHHHHCCCCEEEECCEEECCHHHHHHHHHHCC--CCCCEEEEEEEEECCCCCEECHHHHHHHH
T ss_conf ---445653588677776678556788854798718--87632677777877999688699999988
No 22
>3gmi_A UPF0348 protein MJ0951; protein with unknown function, structural genomics, PSI, MCSG, protein structure initiative; 1.91A {Methanocaldococcus jannaschii DSM2661}
Probab=99.61 E-value=2.6e-14 Score=104.15 Aligned_cols=161 Identities=12% Similarity=0.123 Sum_probs=83.7
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCC-C--C-CCCCCCHHHHHHHHHHHHHHHCCCC----------
Q ss_conf 659996589987848999999999974897999645588-8--7-6657898999999999764201335----------
Q gi|254780181|r 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNS-V--K-TKGFLSIQERSELIKQSIFHFIPDS---------- 67 (182)
Q Consensus 2 mkigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p-~--k-~~~~~s~e~r~~m~~~a~~~~~~~~---------- 67 (182)
+|||-..|.|||+|+||+.++++|.+ .|.+++++++|. + + .+...+...|.+|...+..+.-...
T Consensus 52 ~ki~~i~~EyNPFHnGHlylie~ak~-~d~iI~VmSgnfvQ~~RGepai~~k~~Ra~mAl~~GaDlViELP~~~~~~sa~ 130 (357)
T 3gmi_A 52 DKIVCDFTEYNPLHKGHKYALEKGKE-HGIFISVLPGPLERSGRGIPYFLNRYIRAEMAIRAGADIVVEGPPMGIMGSGQ 130 (357)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHHHT-SSEEEEEECCTTSBCTTSSBCSSCHHHHHHHHHHHTCSEEEECCCGGGSCHHH
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHH-CCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCEEEECCHH
T ss_conf 82899987328986789999999985-59989996898655566774439999999999982888464367536744278
Q ss_pred ------------CCCCEEECCCC-----CCCCCCCCCCCEE----EEEECCCC----CCHHHH---H-----HHHHHHHH
Q ss_conf ------------54412420333-----3322100149707----99943765----201246---7-----79989876
Q gi|254780181|r 68 ------------SNRVSVISFEG-----LAVNLAKDISAQV----IVRGLRDM----TDFDYE---M-----RMTSVNRC 114 (182)
Q Consensus 68 ------------~~~~~~~~~~~-----~~~~~~~~~~~~~----~~~~~~~~----~~~~~~---~-----~~~~~~~~ 114 (182)
..+........ ............. .+...... ..+... . ....+.+.
T Consensus 131 Fa~~aV~ll~~lg~d~l~FG~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~iL~~~~i~~~~i~R~ 210 (357)
T 3gmi_A 131 YMRCLIKMFYSLGAEIIPRGYIPEKTMEKVIDCINKGYHIQVKPYKIICIETGEILGEKLNIDNYVIASMSQMIYKLNRE 210 (357)
T ss_dssp HHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHTTCCEEEETTEEEETTTCCEEESCCCGGGHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHH
T ss_conf 89889888887297522015888279999999998507737689999886520778888755899975552654411121
Q ss_pred HCCCCCEEEEECCCCCCCCCHHHHHHHHHCCC--CHHHCCCHHHHHHHHHHHH
Q ss_conf 47998689970685721132699999998599--9558399999999999999
Q gi|254780181|r 115 LCPEIATIALFAKESSRYVTSTLIRHLISIDA--DITSFVPDPVCVFLKNIVI 165 (182)
Q Consensus 115 l~~~~~~i~l~~~~~~~~ISST~IR~~i~~g~--~i~~lVP~~V~~yIk~~~~ 165 (182)
..+.....+. ......+|||.||+.++.|+ +++.+||++|.+||++.+.
T Consensus 211 -~~~~~~~~i~-~~~~~~~SAT~IR~~i~~g~~e~i~~~vP~~~~~~l~~~~~ 261 (357)
T 3gmi_A 211 -GLKFNPKFVF-VKRLEGISGTKIREAIFSGKFEDIKNMLPKTTLSILKELYD 261 (357)
T ss_dssp -TCCCCCEEEE-EECSCCCCHHHHHHHHHTTCGGGTGGGSCHHHHHHHHHHHH
T ss_pred -CCCCCCCCCC-CCCCCCCCHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHH
T ss_conf -1568863123-66545116999999998588779987389999999997412
No 23
>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP; 2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A*
Probab=99.56 E-value=1.3e-14 Score=105.94 Aligned_cols=124 Identities=23% Similarity=0.235 Sum_probs=81.0
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCC----CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCC
Q ss_conf 6599965899878489999999999748979996455888----766578989999999997642013355441242033
Q gi|254780181|r 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSV----KTKGFLSIQERSELIKQSIFHFIPDSSNRVSVISFE 77 (182)
Q Consensus 2 mkigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p~----k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~~~ 77 (182)
||.++.+|+|||+|.||+.+.++|.+++|+++++....+. |..+..|.++|.++++.. . ..+........
T Consensus 1 Mk~V~~~G~FD~lH~GH~~~l~~Ak~~gd~liV~v~~D~~~~~~k~~pi~~~~eR~~~l~~l-~-----~Vd~v~~~~~~ 74 (129)
T 1coz_A 1 MKKVITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQKQKKAYHSYEHRKLILETI-R-----YVDEVIPEKNW 74 (129)
T ss_dssp CCEEEEEECCCSCCHHHHHHHHHHHTTSSEEEEEEECHHHHHHHTCCCSSCHHHHHHHHTTB-T-----TCCEEEEECCS
T ss_pred CCEEEEEEEECCCCHHHHHHHHHHHHHCCEEEEEEECCCHHHCCCCCCCCCHHHHHHHHHHC-C-----CCCEEEEECCC
T ss_conf 93999934548799899999999997299899997067102058998878999999998652-5-----87889973785
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHC
Q ss_conf 3332210014970799943765201246779989876479986899706857211326999999985
Q gi|254780181|r 78 GLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIALFAKESSRYVTSTLIRHLISI 144 (182)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~~~~~~ISST~IR~~i~~ 144 (182)
.............+.+.|.+....+. .+....+.+++.... .+|||.||++|++
T Consensus 75 ~~~~~~i~~~~~d~~v~g~d~~~~~~----------~~k~~~~v~~~~~~~---~iSSt~i~~~I~~ 128 (129)
T 1coz_A 75 EQKKQDIIDHNIDVFVMGDDWEGKFD----------FLKDQCEVVYLPRTE---GISTTKIKEEIAG 128 (129)
T ss_dssp TTHHHHHHHTTCSEEEEEGGGTTTTG----------GGTTTSEEEEECCCT---TCCHHHHHHTC--
T ss_pred CCCHHHHHHCCCCEEEECCCCCCHHH----------HHHCCCEEEEECCCC---CCCHHHHHHHHHC
T ss_conf 53788885239969998787466568----------886498899968998---8758999999973
No 24
>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A {Staphylococcus aureus}
Probab=99.56 E-value=1.6e-14 Score=105.41 Aligned_cols=126 Identities=17% Similarity=0.305 Sum_probs=82.0
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCC----CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCC
Q ss_conf 6599965899878489999999999748979996455888----766578989999999997642013355441242033
Q gi|254780181|r 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSV----KTKGFLSIQERSELIKQSIFHFIPDSSNRVSVISFE 77 (182)
Q Consensus 2 mkigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p~----k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~~~ 77 (182)
||.++.+|+|||+|.||+.+.++|.+++|.++++...++. |..+..+.++|.++++.... .+........
T Consensus 1 MK~V~~~G~FD~lH~GHi~~l~~Ak~~gd~liV~v~~D~~~~~~k~~p~~~~~~R~~~l~~l~~------Vd~v~~~~~~ 74 (132)
T 2b7l_A 1 MKRVITYGTYDLLHYGHIELLRRAREMGDYLIVALSTDEFNQIKHKKSYYDYEQRKMMLESIRY------VDLVIPEKGW 74 (132)
T ss_dssp CCEEEEEECCCSCCHHHHHHHHHHHHTSSEEEEEEECHHHHHHTTCCCSSCHHHHHHHHHTBTT------CCEEEEECCG
T ss_pred CCEEEEEEEECCCCHHHHHHHHHHHHHCCEEEEEEECCHHHHHHCCCCCCCHHHHHHHHHCCCC------CCEEEEECCC
T ss_conf 9399992267889989999999999729999999816556553148885608999877400577------8899980452
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCC
Q ss_conf 333221001497079994376520124677998987647998689970685721132699999998599
Q gi|254780181|r 78 GLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIALFAKESSRYVTSTLIRHLISIDA 146 (182)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~~~~~~ISST~IR~~i~~g~ 146 (182)
...............+.|.+....+.. +....+.+++ ... ..+|||.||+++..++
T Consensus 75 ~~~~~~i~~~~~d~~v~G~d~~~~~~~----------~k~~~~~i~~-~~~--~~iSST~I~~~i~~~~ 130 (132)
T 2b7l_A 75 GQKEDDVEKFDVDVFVMGHDWEGEFDF----------LKDKCEVIYL-KRT--EGISTTKIKQELYGKD 130 (132)
T ss_dssp GGHHHHHHHTTCCEEEECGGGTTTTGG----------GTTTSEEEEC-SSC--C---------------
T ss_pred CCHHHHHHHHCCCEEEECCCCCCHHHH----------HHCCCEEEEE-CCC--CCCCHHHHHHHHHCCC
T ss_conf 246999997299799985886660378----------8749899993-899--8886899999985403
No 25
>3glv_A Lipopolysaccharide core biosynthesis protein; structural genomics, PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1}
Probab=99.44 E-value=1.6e-13 Score=99.44 Aligned_cols=134 Identities=19% Similarity=0.280 Sum_probs=78.1
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCC----CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECC
Q ss_conf 9659996589987848999999999974897999645588----876657898999999999764201335544124203
Q gi|254780181|r 1 MMRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNS----VKTKGFLSIQERSELIKQSIFHFIPDSSNRVSVISF 76 (182)
Q Consensus 1 MmkigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p----~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~~ 76 (182)
|||+ +.+|+|||+|.||+.++++|.+++|.+++....++ .+.......+.+....... ..........
T Consensus 2 M~rV-~~~G~FD~~H~GH~~ll~~Ak~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 73 (143)
T 3glv_A 2 MIRV-MATGVFDILHLGHIHYLKESKKLGDELVVVVARDSTARNNGKIPIFDENSRLALISEL-------KVVDRAILGH 73 (143)
T ss_dssp CCEE-EEEECCSSCCHHHHHHHHHHHTTSSEEEEEECCHHHHHHTTCCCSSCHHHHHHHHTTB-------TTCSEEEECC
T ss_pred CEEE-EEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC-------CCEEEEEEEC
T ss_conf 7899-9985789998999999999987098223222357400023322006899999862245-------5404899741
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCC
Q ss_conf 3333221001497079994376520124677998987647998689970685721132699999998599
Q gi|254780181|r 77 EGLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIALFAKESSRYVTSTLIRHLISIDA 146 (182)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~~~~~~ISST~IR~~i~~g~ 146 (182)
................+.|.+-. +. ........+.+..+.+.+.+...... .||||.||+++.+..
T Consensus 74 ~~~~~~~~~~~~~~~~v~G~D~~--~~-~~~~~~~~~~~~~~~~~i~~~~~~~~-~iSST~I~~~i~~~~ 139 (143)
T 3glv_A 74 EGDMMKTVIEVKPDIITLGYDQK--FD-EAELQSKINKLGITVKIVRISKYDGQ-LNSSSSVRKKIMELI 139 (143)
T ss_dssp TTCHHHHHHHHCCSEEEECTTCH--HH-HHHHHHHHHHHTCCCEEEECCCCC------------------
T ss_pred CHHHHHHHHHHCCCEEEECCCCC--CC-CHHHHHHHHHCCCCEEEEEEECCCCE-EEEHHHHHHHHHHHC
T ss_conf 14677899996999899778754--76-33789999971991899996658993-885799999999962
No 26
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens}
Probab=99.09 E-value=9.4e-10 Score=76.96 Aligned_cols=130 Identities=14% Similarity=0.121 Sum_probs=82.9
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCC----CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCC
Q ss_conf 659996589987848999999999974897999645588----8766578989999999997642013355441242033
Q gi|254780181|r 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNS----VKTKGFLSIQERSELIKQSIFHFIPDSSNRVSVISFE 77 (182)
Q Consensus 2 mkigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p----~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~~~ 77 (182)
+| ....|+||++|.||+.+.++|.+++|+++|++.... .|.++..+.++|.++++....-+ ........
T Consensus 8 ~r-V~~~G~FDl~H~GH~~~l~~Ak~~gd~LiVgv~sD~~i~~~Kg~Pv~~~~eR~~~v~~~k~VD------~Vi~~~~~ 80 (341)
T 3elb_A 8 VR-VWCDGCYDMVHYGHSNQLRQARAMGDYLIVGVHTDEEIAKHKGPPVFTQEERYKMVQAIKWVD------EVVPAAPY 80 (341)
T ss_dssp CE-EEEEECCCSCCHHHHHHHHHHHHTSSEEEEEECCHHHHHHHSSCCSSCHHHHHHHHHHBTTCC------EEEETCCS
T ss_pred EE-EEEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCCCCCCCHHHHHHHHHCCCCCC------EEEECCCC
T ss_conf 69-999313577898999999999973998999983569998559999899999999997356887------89966886
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCC
Q ss_conf 33322100149707999437652012467799898764799868997068572113269999999859
Q gi|254780181|r 78 GLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIALFAKESSRYVTSTLIRHLISID 145 (182)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~~~~~~ISST~IR~~i~~g 145 (182)
.............+.+.|.+.............. + ....... ..+. ..||||.|.+++...
T Consensus 81 ~~~~~~l~~~~~d~vv~GdD~~~~~~~~~~~~~~-k---~~g~~~~-~~rt--~giSTT~ii~r~l~~ 141 (341)
T 3elb_A 81 VTTLETLDKYNCDFCVHGNDITLTVDGRDTYEEV-K---QAGRYRE-CKRT--QGVSTTDLVGRMLLV 141 (341)
T ss_dssp SCCHHHHHHTTCSEEEECSCCCBCTTSCBTTHHH-H---HTTCEEE-CCCC--TTCCHHHHHHHHHC-
T ss_pred CCHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHH-H---CCCEEEE-ECCC--CCCCHHHHHHHHHHH
T ss_conf 2579999986999999888165677741277999-8---0998998-1476--998879999999875
No 27
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens}
Probab=99.08 E-value=7.2e-10 Score=77.65 Aligned_cols=134 Identities=13% Similarity=0.137 Sum_probs=78.1
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCE--EEEECCCCCC----C--CCCCCCHHHHHHHHHHHHHHHCCCCCCCCEE
Q ss_conf 659996589987848999999999974897--9996455888----7--6657898999999999764201335544124
Q gi|254780181|r 2 MRKAVYTGSFDPITNGHMDIIIQALSFVED--LVIAIGCNSV----K--TKGFLSIQERSELIKQSIFHFIPDSSNRVSV 73 (182)
Q Consensus 2 mkigifgGsFdPiH~GHL~ia~~a~~~~D~--vii~~~~~p~----k--~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~ 73 (182)
+||+...|+||++|.||+.+.++|.+++|+ |+|+...... | ..+..+.++|.+++.... ..+....
T Consensus 198 ~kivyv~G~FDl~H~GHi~~L~~Ak~~gd~~~LIVgv~sD~~v~~~Kg~~~Pi~~~~eR~~~v~~~k------~VD~Vvi 271 (341)
T 3elb_A 198 ETVIYVAGAFDLFHIGHVDFLEKVHRLAERPYIIAGLHFDQEVNHYKGKNYPIMNLHERTLSVLACR------YVSEVVI 271 (341)
T ss_dssp CEEEEEEECCTTCCHHHHHHHHHHHTTSSSEEEEEEEECHHHHHHHHCTTCCSSCHHHHHHHHHTBT------TCCEEEE
T ss_pred CEEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHCCCCCCCCCHHHHHHHHHHCC------CCCEEEE
T ss_conf 8499993335256625999999999729986269999664889963499999899999999997037------8778997
Q ss_pred ECCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 20333332210014970799943765201246779989876479986899706857211326999999985999
Q gi|254780181|r 74 ISFEGLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIALFAKESSRYVTSTLIRHLISIDAD 147 (182)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~~~~~~ISST~IR~~i~~g~~ 147 (182)
...................+.|.+...............+... ++...+. ...+|||.|.+||.+++.
T Consensus 272 ~~~~~~~~~~i~~~~~d~vv~G~d~~~~~~~~~d~~~~~k~~g-----i~~~i~~-~~~iSTt~Ii~rI~~nr~ 339 (341)
T 3elb_A 272 GAPYAVTAELLSHFKVDLVCHGKTEIIPDRDGSDPYQEPKRRG-----IFRQIDS-GSNLTTDLIVQRIITNRL 339 (341)
T ss_dssp EECSSCCHHHHHHTTCSEEEECSSCCCCCTTSCCTTHHHHHHT-----CEEECCC-SCCCCHHHHHHHHHC---
T ss_pred CCCCCCHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHCC-----EEEEECC-CCCCCHHHHHHHHHHHHH
T ss_conf 8997466999998599799988998876655215889997199-----9999089-999388999999997675
No 28
>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold, phospholipid synthesis, phosphatidylcholine, phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A {Rattus norvegicus}
Probab=98.81 E-value=5.6e-09 Score=72.35 Aligned_cols=129 Identities=12% Similarity=0.102 Sum_probs=74.7
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHC--CEEEEECCCCC----CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCC
Q ss_conf 9965899878489999999999748--97999645588----87665789899999999976420133554412420333
Q gi|254780181|r 5 AVYTGSFDPITNGHMDIIIQALSFV--EDLVIAIGCNS----VKTKGFLSIQERSELIKQSIFHFIPDSSNRVSVISFEG 78 (182)
Q Consensus 5 gifgGsFdPiH~GHL~ia~~a~~~~--D~vii~~~~~p----~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~~~~ 78 (182)
..--|+||++|.||+.+.++|.+++ |.|+|+..+.. .|..+..+.++|.+++.....-+. ........
T Consensus 79 Vyv~G~FDLfH~GHi~lL~~AK~l~~gd~LIVGV~sDe~i~k~Kg~pi~~~~eR~~~l~~~r~VD~------VI~~~p~~ 152 (236)
T 3hl4_A 79 VYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVMNENERYDAVQHCRYVDE------VVRNAPWT 152 (236)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHTSSSSEEEEEEECCHHHHHHHTCCCSSCHHHHHHHHHTBTTCSE------EESSCCSS
T ss_pred EEEECEECCCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHCCCCCCCCHHHHHHHHHHCCCCCC------CCCCCCCC
T ss_conf 999451588898999999999605998989999777899985699999999999998652145535------22489855
Q ss_pred CCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCC
Q ss_conf 33221001497079994376520124677998987647998689970685721132699999998599
Q gi|254780181|r 79 LAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIALFAKESSRYVTSTLIRHLISIDA 146 (182)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~~~~~~ISST~IR~~i~~g~ 146 (182)
............+.+.+.+.............+.. ....+.+ ... ..||||.|.++|.++.
T Consensus 153 ~~~~~l~~~~~d~vv~gdd~~~~~~~~~~~~~~k~----~g~~~~i-~rt--~giSTT~II~RI~~~~ 213 (236)
T 3hl4_A 153 LTPEFLAEHRIDFVAHDDIPYSSAGSDDVYKHIKE----AGMFAPT-QRT--EGISTSDIITRIVRDY 213 (236)
T ss_dssp CCHHHHHHTTCCEEEEESSCCCCSSCSCTTHHHHH----TTCEEEE-CCC--TTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHH----CCEEEEE-CCC--CCCCHHHHHHHHHHHH
T ss_conf 62999987299789868964427771559999873----8999997-899--8823999999999879
No 29
>1v47_A ATP sulfurylase; product binding complex, zinc, riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; HET: ADX; 2.49A {Thermus thermophilus} SCOP: b.122.1.3 c.26.1.5
Probab=98.45 E-value=5.7e-06 Score=54.41 Aligned_cols=157 Identities=14% Similarity=0.136 Sum_probs=87.1
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECC-------
Q ss_conf 9996589987848999999999974897999645588876657898999999999764201335544124203-------
Q gi|254780181|r 4 KAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKGFLSIQERSELIKQSIFHFIPDSSNRVSVISF------- 76 (182)
Q Consensus 4 igifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~~------- 76 (182)
++-|- |=||+|.||-.+.+.+++..|-+++-|-..+.| ....+.+.|....+...................
T Consensus 158 VvaFq-TRNp~HraHe~i~r~a~e~~d~lli~plvG~~k-~~d~~~~~r~~~~~~~~~~~~~~~~~~l~~l~~~~~~aGP 235 (349)
T 1v47_A 158 VVAFQ-TRNAPHRAHEYLIRLGLELADGVLVHPILGAKK-PDDFPTEVIVEAYQALIRDFLPQERVAFFGLATPMRYAGP 235 (349)
T ss_dssp EEEEE-ESSCCCHHHHHHHHHHHHHSSEEEEEEBCSCCC-TTSCCHHHHHHHHHHHHHHHSCGGGEEECCBCSCCCCCTH
T ss_pred EEEEE-ECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCC-CCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHCCCC
T ss_conf 89985-279887579999999997479789960546776-5656879999999999834588763999844750201684
Q ss_pred --CCCCCCCCCCCCCEEEEEECCCCC--CHHHHHHHHHHHHHHCC-CCCEEEE--------------EC-C-----CCCC
Q ss_conf --333322100149707999437652--01246779989876479-9868997--------------06-8-----5721
Q gi|254780181|r 77 --EGLAVNLAKDISAQVIVRGLRDMT--DFDYEMRMTSVNRCLCP-EIATIAL--------------FA-K-----ESSR 131 (182)
Q Consensus 77 --~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~-~~~~i~l--------------~~-~-----~~~~ 131 (182)
.......-.....-.+++|-+... .|........+...... +.+.+.+ .. . ..+.
T Consensus 236 rEa~lhAiirkN~GcthfivGrdhAG~~~~Y~~~~a~~i~~~~~~l~I~~v~~~~~~yc~~~~~~~~~~~cp~~~~~~~~ 315 (349)
T 1v47_A 236 KEAVFHALVRKNFGATHFLVGRDHAGVGDFYDPYAAHRIFDRLPPLGIEIVKVGAVFHCPLCGGIASERTCPEGHREKRT 315 (349)
T ss_dssp HHHHHHHHHHHHTTCSEEEECTTTTCSTTCSCTTHHHHGGGGSCCCSSEEEECCCEEEETTTTEEEETTTSCGGGGGGCE
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCEEEECCCCCEEECCCCCCCCCCCCE
T ss_conf 78899999998779970643688886223579157789986484567369965733897334847332557998764556
Q ss_pred CCCHHHHHHHHHCCCCH-HHCCCHHHHHHHHH
Q ss_conf 13269999999859995-58399999999999
Q gi|254780181|r 132 YVTSTLIRHLISIDADI-TSFVPDPVCVFLKN 162 (182)
Q Consensus 132 ~ISST~IR~~i~~g~~i-~~lVP~~V~~yIk~ 162 (182)
.||+|+||++++.|+.+ +.+.++.|++.|++
T Consensus 316 ~iSgt~iR~~L~~g~~~P~~f~rpeV~~~L~r 347 (349)
T 1v47_A 316 AISMTKVRALLREGKAPPSELVRPELLPILRR 347 (349)
T ss_dssp ECCHHHHHHHHHTTCCCCTTTSCGGGHHHHHT
T ss_pred ECCHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf 42789999999874888956474999999986
No 30
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=98.40 E-value=1.8e-05 Score=51.49 Aligned_cols=167 Identities=13% Similarity=0.090 Sum_probs=89.4
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHC-------CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHC--CCCCCCCEE
Q ss_conf 599965899878489999999999748-------97999645588876657898999999999764201--335544124
Q gi|254780181|r 3 RKAVYTGSFDPITNGHMDIIIQALSFV-------EDLVIAIGCNSVKTKGFLSIQERSELIKQSIFHFI--PDSSNRVSV 73 (182)
Q Consensus 3 kigifgGsFdPiH~GHL~ia~~a~~~~-------D~vii~~~~~p~k~~~~~s~e~r~~m~~~a~~~~~--~~~~~~~~~ 73 (182)
+++-|- |=||+|.||..+.+.+++.+ +.+++.|-..+.| ....+.+.|..-.+....... .........
T Consensus 414 ~VvaFq-TRNp~HraHe~l~~~a~~~~~~~~~~~~~lli~plvG~~k-~gD~~~~~r~~~~~~~l~~~~~p~~~~~l~~~ 491 (630)
T 1x6v_B 414 AVSAFQ-LRNPVHNGHALLMQDTHKQLLERGYRRPVLLLHPLGGWTK-DDDVPLMWRMKQHAAVLEEGVLNPETTVVAIF 491 (630)
T ss_dssp EEEEEE-ESSCCCHHHHHHHHHHHHHHHHHTCSSEEEEEEEBCSCCC-TTSCCHHHHHHHHHHHHHTTSSCGGGEEECCB
T ss_pred EEEEEC-CCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC-CCCCCHHHHHHHHHHHHHHCCCCCCCEEECCC
T ss_conf 145530-4889866789999999999873666676389840457888-66667589999999999853588674586036
Q ss_pred EC--------CCCCCCCCCCCCCCEEEEEECCCC--------CCHHHHHHHHHHHHHHCCC--CCEEEE-----------
Q ss_conf 20--------333332210014970799943765--------2012467799898764799--868997-----------
Q gi|254780181|r 74 IS--------FEGLAVNLAKDISAQVIVRGLRDM--------TDFDYEMRMTSVNRCLCPE--IATIAL----------- 124 (182)
Q Consensus 74 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~--~~~i~l----------- 124 (182)
.. ........-.....-.+++|-+-. ..|........+....... .+.+.+
T Consensus 492 p~~mryAGPREA~lhAiirkN~GcThfiVGRDHAG~g~~~~~~~~Y~~~~a~~i~~~~~~~l~I~ii~~~e~~Yc~~c~~ 571 (630)
T 1x6v_B 492 PSPMMYAGPTEVQWHCRARMVAGANFYIVGRDPAGMPHPETGKDLYEPSHGAKVLTMAPGLITLEIVPFRVAAYNKKKKR 571 (630)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTTCSEEEECSSTTCCBCTTTCSBSSCTTHHHHHHHHCTTCTTCEEEECCCEEEETTTTE
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCEEEECCCCE
T ss_conf 75546678089999999999779983646888789887776767778467899998382225845898051489756780
Q ss_pred ---ECCC---CCCCCCHHHHHHHHHCCCC-HHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf ---0685---7211326999999985999-558399999999999999865457
Q gi|254780181|r 125 ---FAKE---SSRYVTSTLIRHLISIDAD-ITSFVPDPVCVFLKNIVISLVKYD 171 (182)
Q Consensus 125 ---~~~~---~~~~ISST~IR~~i~~g~~-i~~lVP~~V~~yIk~~~~~~~k~~ 171 (182)
...+ ....||+|++|++++.|+. -..+.+|.|++.|.+-+..++|..
T Consensus 572 ~~~~~~~~~~~~~~iSGt~lR~~L~~G~~pP~~f~rpeVa~iL~~~y~~l~~~~ 625 (630)
T 1x6v_B 572 MDYYDSEHHEDFEFISGTRMRKLAREGQKPPEGFMAPKAWTVLTEYYKSLEKAH 625 (630)
T ss_dssp EEECCSTTGGGEECCCHHHHHHHHHTTCCCCTTSSCHHHHHHHHHHHHHHCC--
T ss_pred EEECCCCCCCCEECCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 640578997671145799999999785999955087899999999998766632
No 31
>1jhd_A Sulfate adenylyltransferase; sulfurylase, APS, chemoautotroph, bromide; 1.70A {Sulfur-oxidizing endosymbiont ofriftia pachyptila} SCOP: b.122.1.3 c.26.1.5
Probab=98.17 E-value=0.00021 Score=45.11 Aligned_cols=162 Identities=15% Similarity=0.236 Sum_probs=85.6
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHH--CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCC----
Q ss_conf 9996589987848999999999974--8979996455888766578989999999997642013355441242033----
Q gi|254780181|r 4 KAVYTGSFDPITNGHMDIIIQALSF--VEDLVIAIGCNSVKTKGFLSIQERSELIKQSIFHFIPDSSNRVSVISFE---- 77 (182)
Q Consensus 4 igifgGsFdPiH~GHL~ia~~a~~~--~D~vii~~~~~p~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~~~---- 77 (182)
+.=|- |=||+|.||..+.+.|++. .|-+++-|-..+.|. ...+.+.|..-.+.....+..............
T Consensus 195 VvaFq-TRNp~Hr~He~l~~~al~~~~~~~lli~p~~G~~k~-~d~~~~~r~~~~~~~~~~~~~~~~~~l~~l~~~m~yA 272 (396)
T 1jhd_A 195 VVAFQ-TRNPMHRAHEELCRMAMESLDADGVVVHMLLGKLKK-GDIPAPVRDAAIRTMAEVYFPPNTVMVTGYGFDMLYA 272 (396)
T ss_dssp EEEEE-ESSCCCHHHHHHHHHHHHHHTCSEEEEEEEECCCCT-TCCCHHHHHHHHHHHHHHHSCTTCEEEEEEECCCCCC
T ss_pred EEEEE-ECCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCC-CCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
T ss_conf 77764-268897589999999999715783798544335878-7789899999999998623898755998435653457
Q ss_pred -----CCCCCCCCCCCCEEEEEECCCCC--CHHHHHHHHHHHHHHCCC----CCEE--------------EEECC-C---
Q ss_conf -----33322100149707999437652--012467799898764799----8689--------------97068-5---
Q gi|254780181|r 78 -----GLAVNLAKDISAQVIVRGLRDMT--DFDYEMRMTSVNRCLCPE----IATI--------------ALFAK-E--- 128 (182)
Q Consensus 78 -----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~----~~~i--------------~l~~~-~--- 128 (182)
......-.....-.+++|-+-.. .|........+.....++ ...+ ..... +
T Consensus 273 GPrEa~~hAiir~N~GcthfivGRDHAG~g~~Y~~~~aq~i~~~~~~e~~l~I~i~~~~~~~Yc~~c~~~~~~~~~p~~~ 352 (396)
T 1jhd_A 273 GPREAVLHAYFRQNMGATHFIIGRDHAGVGDYYGAFDAQTIFDDEVPEGAMEIEIFRADHTAYSKKLNKIVMMRDVPDHT 352 (396)
T ss_dssp THHHHHHHHHHHHHTTCSEEEECTTTTCCTTCSCTTHHHHHHHHTSCTTSCSCEEEECCCEEEETTTTEEEEGGGCTTCC
T ss_pred CCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCEEEECCCCEEEECCCCCCCC
T ss_conf 85488899999986698416535777763335891667899871267678743899736529987788699736568887
Q ss_pred --CCCCCCHHHHHHHHHCCCC-HHHCCCHHHHHHHHHHHHHH
Q ss_conf --7211326999999985999-55839999999999999986
Q gi|254780181|r 129 --SSRYVTSTLIRHLISIDAD-ITSFVPDPVCVFLKNIVISL 167 (182)
Q Consensus 129 --~~~~ISST~IR~~i~~g~~-i~~lVP~~V~~yIk~~~~~~ 167 (182)
.+..||+|++|++++.|+. -..+..+.|++.|.+=+..+
T Consensus 353 ~~~~~~iSGt~~r~~l~~g~~pP~~f~rpeV~~~L~~~y~~~ 394 (396)
T 1jhd_A 353 KEDFVLLSGTKVREMLGQGIAPPPEFSRPEVAKILMDYYQSI 394 (396)
T ss_dssp GGGEECCCHHHHHHHHHTTCCCCTTTCCHHHHHHHHHHHHHH
T ss_pred CCCCEEECHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 324177458999999988388897665389999999998741
No 32
>2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase, nucleotide-binding, transferase, ATP-binding, multifunctional enzyme; 1.95A {Corynebacterium ammoniagenes}
Probab=98.17 E-value=3.9e-05 Score=49.44 Aligned_cols=144 Identities=17% Similarity=0.150 Sum_probs=70.6
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHC---C-EEEEECCCC-------CCCC-CCCCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 6599965899878489999999999748---9-799964558-------8876-65789899999999976420133554
Q gi|254780181|r 2 MRKAVYTGSFDPITNGHMDIIIQALSFV---E-DLVIAIGCN-------SVKT-KGFLSIQERSELIKQSIFHFIPDSSN 69 (182)
Q Consensus 2 mkigifgGsFdPiH~GHL~ia~~a~~~~---D-~vii~~~~~-------p~k~-~~~~s~e~r~~m~~~a~~~~~~~~~~ 69 (182)
...++--|.||=+|.||-.+++.+.+.. + ...+++-.+ |.+. ....+.+++.+.++....+.......
T Consensus 15 ~~svvtIG~FDGvHlGHq~Li~~~~~~A~~~~~~~~viTF~phP~~~~~~~~~~~~l~~~~ek~~~l~~~gid~~~~i~F 94 (338)
T 2x0k_A 15 DNSAVTIGVFDGVHRGHQKLINATVEKAREVGAKAIMVTFDPHPVSVFLPRRAPLGITTLAERFALAESFGIDGVLVIDF 94 (338)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHHHTCEEEEEEESSCHHHHHSTTCSCCBSSCHHHHHHHHHHTTCSEEEEECT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECH
T ss_conf 99199997273324899999999999999729988999945989998097677501245799999987549988999502
Q ss_pred CCEE-ECCCCCCC-CCC-CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECC--CCCCCCCHHHHHHHHHC
Q ss_conf 4124-20333332-210-0149707999437652012467799898764799868997068--57211326999999985
Q gi|254780181|r 70 RVSV-ISFEGLAV-NLA-KDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIALFAK--ESSRYVTSTLIRHLISI 144 (182)
Q Consensus 70 ~~~~-~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~--~~~~~ISST~IR~~i~~ 144 (182)
.... ........ ... .......++.|.+-............. +.+......+..... ..-..||||.||+.++.
T Consensus 95 ~~~~a~ls~e~Fi~~il~~~l~~k~ivvG~Df~FG~~r~G~~~~L-~~~~~~~~~~~~i~~~~~~~~~ISST~IR~~i~~ 173 (338)
T 2x0k_A 95 TRELSGTSPEKYVEFLLEDTLHASHVVVGANFTFGENAAGTADSL-RQICQSRLTVDVIDLLDDEGVRISSTTVREFLSE 173 (338)
T ss_dssp TTSSSSCCHHHHHHHCCCCCTCEEEEEEETTCEESGGGCEEHHHH-HHHTTTTSEEEEECCCEETTEECSHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHH-HHHCCCCCEEEEEEEEECCCCEECHHHHHHHHHC
T ss_conf 787632798889999987303733999945544430047769999-9854567368864114058823038999999986
Q ss_pred CC
Q ss_conf 99
Q gi|254780181|r 145 DA 146 (182)
Q Consensus 145 g~ 146 (182)
|.
T Consensus 174 G~ 175 (338)
T 2x0k_A 174 GD 175 (338)
T ss_dssp TC
T ss_pred CC
T ss_conf 98
No 33
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=98.03 E-value=9.5e-05 Score=47.14 Aligned_cols=155 Identities=14% Similarity=0.121 Sum_probs=82.6
Q ss_pred CCCCCCCCHHHHHHHHHHHH-HCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEC--------CCC
Q ss_conf 58998784899999999997-489799964558887665789899999999976420133554412420--------333
Q gi|254780181|r 8 TGSFDPITNGHMDIIIQALS-FVEDLVIAIGCNSVKTKGFLSIQERSELIKQSIFHFIPDSSNRVSVIS--------FEG 78 (182)
Q Consensus 8 gGsFdPiH~GHL~ia~~a~~-~~D~vii~~~~~p~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~--------~~~ 78 (182)
.-|=||+|.||..++++++. ..+.+++-|-..+.| ....+.+.|..-.+.+...++........... ...
T Consensus 194 fqTRNplHraHe~li~~a~~~~~~~lli~plvG~~k-~gD~~~~~rvr~y~~~~~~yp~~~~~l~~lp~~mr~aGPrEal 272 (511)
T 1g8f_A 194 FQTRNPMHRAHRELTVRAAREANAKVLIHPVVGLTK-PGDIDHHTRVRVYQEIIKRYPNGIAFLSLLPLAMRMSGDREAV 272 (511)
T ss_dssp EEESSCCCHHHHHHHHHHHHHHTCEEEEEEBCSBCS-TTCCCHHHHHHHHHHHGGGSCTTSEEECCBCCBCCCCHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCC-CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHH
T ss_conf 872688986899999999973367568853121588-5666879999999999973778738981367534657818899
Q ss_pred CCCCCCCCCCCEEEEEECCCCC--------CHHHHHHHHHHHHH----HC----CCCCEEEE--------EC-----CCC
Q ss_conf 3322100149707999437652--------01246779989876----47----99868997--------06-----857
Q gi|254780181|r 79 LAVNLAKDISAQVIVRGLRDMT--------DFDYEMRMTSVNRC----LC----PEIATIAL--------FA-----KES 129 (182)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~----l~----~~~~~i~l--------~~-----~~~ 129 (182)
.....-..+..-.+++|-+... .|........+... +. +..+.++. .. ...
T Consensus 273 lhAiirkN~GcthfiVGRDHAG~g~~~~g~~fY~p~~Aq~~~~~~~~el~I~~v~~~~~~Y~~~~~~~~~~~~~~~~~~~ 352 (511)
T 1g8f_A 273 WHAIIRKNYGASHFIVGRDHAGPGKNSKGVDFYGPYDAQELVESYKHELDIEVVPFRMVTYLPDEDRYAPIDQIDTTKTR 352 (511)
T ss_dssp HHHHHHHHTTCSEEECCTTTTCCCBCTTSCBSSCTTHHHHHHHHTHHHHCSEEECCCCEEEEGGGTEEEEGGGCSSSCCC
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCHHHCCCCCCCCCEEEEECCCCCEEECCCCCCCCCC
T ss_conf 98888875599547867877788877656567785677899985531228731224504996178837865778998665
Q ss_pred CCCCCHHHHHHHHHCCCC-HHHCCCHHHHHHHHHH
Q ss_conf 211326999999985999-5583999999999999
Q gi|254780181|r 130 SRYVTSTLIRHLISIDAD-ITSFVPDPVCVFLKNI 163 (182)
Q Consensus 130 ~~~ISST~IR~~i~~g~~-i~~lVP~~V~~yIk~~ 163 (182)
...||+|++|++++.|+. -..+.++.|++.+++-
T Consensus 353 ~~~iSGtelr~~L~~G~~iP~~f~~peVa~~L~~~ 387 (511)
T 1g8f_A 353 TLNISGTELRRRLRVGGEIPEWFSYPEVVKILRES 387 (511)
T ss_dssp CBCCCHHHHHHHHHHTCCCCTTTSCHHHHHHHHHH
T ss_pred EEEECHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 37007999999997769889441889999999985
No 34
>1r6x_A ATP:sulfate adenylyltransferase; APS kinase-like domain; 1.40A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5
Probab=98.02 E-value=0.00013 Score=46.41 Aligned_cols=157 Identities=14% Similarity=0.105 Sum_probs=84.3
Q ss_pred EECCCCCCCCHHHHHHHHHHHHH-CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEC--------C
Q ss_conf 96589987848999999999974-89799964558887665789899999999976420133554412420--------3
Q gi|254780181|r 6 VYTGSFDPITNGHMDIIIQALSF-VEDLVIAIGCNSVKTKGFLSIQERSELIKQSIFHFIPDSSNRVSVIS--------F 76 (182)
Q Consensus 6 ifgGsFdPiH~GHL~ia~~a~~~-~D~vii~~~~~p~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~--------~ 76 (182)
+-.-|-||+|.||..++++++.. .|.|+|-|-..+.| ....+.+.|..-.+.+...+............ .
T Consensus 191 vafqTRNp~HraHe~ii~~a~~~~~~~lli~plvG~~k-~gd~~~~~r~~~~~~~~~~~p~~~~~l~~~~~~~ryaGPrE 269 (395)
T 1r6x_A 191 VAFQTRNPMHRAHRELTVRAAREANAKVLIHPVVGLTK-PGDIDHHTRVRVYQEIIKRYPNGIAFLSLLPLAMRMSGDRE 269 (395)
T ss_dssp EEECCSSCCCHHHHHHHHHHHHHTTCEEEECCBCSBCC-TTCCCHHHHHHHHHHHGGGSSTTCEEECCBCCBCCCCHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCC-CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHH
T ss_conf 68871788976899999999984499789970222588-66668799999999999737887599804764335567267
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCC--------CHHHHHHHHHH----HHHHC----CCCCEEE--------EEC-----C
Q ss_conf 333322100149707999437652--------01246779989----87647----9986899--------706-----8
Q gi|254780181|r 77 EGLAVNLAKDISAQVIVRGLRDMT--------DFDYEMRMTSV----NRCLC----PEIATIA--------LFA-----K 127 (182)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~----~~~l~----~~~~~i~--------l~~-----~ 127 (182)
.......-..+..-.+++|-+-.. .|........+ ...+. +..+.++ ... .
T Consensus 270 a~lhAiirkN~GcthfivGrdhAg~g~~~~~~~~Y~~~~a~~~~~~~~~~l~I~ii~~~~~~Yc~~c~~~~~~~~~~~~~ 349 (395)
T 1r6x_A 270 AVWHAIIRKNYGASHFIVGRDHAGPGKNSKGVDFYGPYDAQELVESYKHELDIEVVPFRMVTYLPDEDRYAPIDQIDTTK 349 (395)
T ss_dssp HHHHHHHHHHTTCSEEEECTTTTCCCBCTTSCBSSCTTHHHHHHHHHHHHHTCEEEECCCEEEEGGGTEEEETTTSCSSS
T ss_pred HHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCEEEECCCCCEEECCCCCCCC
T ss_conf 78889999866998400377767889887676557830577899865313696499705139973788288767789973
Q ss_pred CCCCCCCHHHHHHHHHCCCC-HHHCCCHHHHHHHHHH
Q ss_conf 57211326999999985999-5583999999999999
Q gi|254780181|r 128 ESSRYVTSTLIRHLISIDAD-ITSFVPDPVCVFLKNI 163 (182)
Q Consensus 128 ~~~~~ISST~IR~~i~~g~~-i~~lVP~~V~~yIk~~ 163 (182)
.....||+|+||++++.|+. -..+.++.|++.+.+-
T Consensus 350 ~~~~~iSGt~ir~~L~~G~~~P~~f~rpeVa~~L~~~ 386 (395)
T 1r6x_A 350 TRTLNISGTELRRRLRVGGEIPEWFSYPEVVKILRES 386 (395)
T ss_dssp CCCBCCCHHHHHHHHHHTCCCCTTTSCHHHHHHHTTC
T ss_pred CCEEEECHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 3547326999999997788889340889999999986
No 35
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=98.02 E-value=0.00011 Score=46.73 Aligned_cols=155 Identities=16% Similarity=0.177 Sum_probs=83.8
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHH-HCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCC-
Q ss_conf 5999658998784899999999997-48979996455888766578989999999997642013355441242033333-
Q gi|254780181|r 3 RKAVYTGSFDPITNGHMDIIIQALS-FVEDLVIAIGCNSVKTKGFLSIQERSELIKQSIFHFIPDSSNRVSVISFEGLA- 80 (182)
Q Consensus 3 kigifgGsFdPiH~GHL~ia~~a~~-~~D~vii~~~~~p~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~~~~~~- 80 (182)
+++-|- |-||+|.||-.+.++++. ..|.+++.|-..+.| ....+.+.|....+.....++... .........
T Consensus 192 ~vvaFq-TRNp~HraHE~l~~~a~~~~~~~llI~plvG~~k-~~d~~~~~r~~~~~~~~~~~~~~~----~~l~~~~~~m 265 (573)
T 1m8p_A 192 RVVAFQ-TRNPMHRAHRELTVRAARSRQANVLIHPVVGLTK-PGDIDHFTRVRAYQALLPRYPNGM----AVLGLLGLAM 265 (573)
T ss_dssp SEEEEC-CSSCCCHHHHHHHHHHHHHTTCEEEECCBCCCCC-TTCHHHHHHHHHHHHHGGGSSTTS----EEECBBCCCC
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCC-CCCCCHHHHHHHHHHHHHHCCCCC----EEECCCCCCC
T ss_conf 046652-2788876899999999986379678443001467-666678999999988885088763----5742456432
Q ss_pred -----------CCCCCCCCCEEEEEECCCCC--------CHHHHHHHHHHHHHHC--CCCCEEEE--------------E
Q ss_conf -----------22100149707999437652--------0124677998987647--99868997--------------0
Q gi|254780181|r 81 -----------VNLAKDISAQVIVRGLRDMT--------DFDYEMRMTSVNRCLC--PEIATIAL--------------F 125 (182)
Q Consensus 81 -----------~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~--~~~~~i~l--------------~ 125 (182)
...-.....-.+++|-+-.. .|........+...+. -+.+.+.+ .
T Consensus 266 ~yaGPrEa~lhAiirkN~GcthfiVGRDHAG~g~~~~~~~fY~~~~a~~i~~~~~~~l~I~ii~~~~~~Yc~~c~~~~~~ 345 (573)
T 1m8p_A 266 RMGGPREAIWHAIIRKNHGATHFIVGRDHAGPGSNSKGEDFYGPYDAQHAVEKYKDELGIEVVEFQMVTYLPDTDEYRPV 345 (573)
T ss_dssp CCCHHHHHHHHHHHHHHHTCSEEEECTTTTCCCCCTTCCCSSCTTHHHHHHHHHHHHHCCEEEECCCCCBBTTTTBCCCS
T ss_pred CCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCHHHCCCCEECCCCCEEECCCCCEEEC
T ss_conf 45783588898999852798557755665677888667878884135789985533208861024650643356728766
Q ss_pred ----CCCCCCCCCHHHHHHHHHCCCC-HHHCCCHHHHHHHHHH
Q ss_conf ----6857211326999999985999-5583999999999999
Q gi|254780181|r 126 ----AKESSRYVTSTLIRHLISIDAD-ITSFVPDPVCVFLKNI 163 (182)
Q Consensus 126 ----~~~~~~~ISST~IR~~i~~g~~-i~~lVP~~V~~yIk~~ 163 (182)
.......||+|+||++++.|+. -..+..+.|++.|++-
T Consensus 346 ~~c~~~~~~~~iSgt~iR~~L~~G~~~P~~f~rpeV~~~L~~~ 388 (573)
T 1m8p_A 346 DQVPAGVKTLNISGTELRRRLRSGAHIPEWFSYPEVVKILRES 388 (573)
T ss_dssp SSSCTTSCCBCCCHHHHHHHHHHTCCCCTTTSCHHHHHHHHTT
T ss_pred CCCCCCCCEEEECHHHHHHHHHCCCCCCHHHCCHHHHHHHHHH
T ss_conf 7778987545114789999997799999476447789999986
No 36
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=97.97 E-value=8.4e-05 Score=47.46 Aligned_cols=158 Identities=12% Similarity=0.122 Sum_probs=84.7
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHHC-CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCC-----
Q ss_conf 99965899878489999999999748-979996455888766578989999999997642013355441242033-----
Q gi|254780181|r 4 KAVYTGSFDPITNGHMDIIIQALSFV-EDLVIAIGCNSVKTKGFLSIQERSELIKQSIFHFIPDSSNRVSVISFE----- 77 (182)
Q Consensus 4 igifgGsFdPiH~GHL~ia~~a~~~~-D~vii~~~~~p~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~~~----- 77 (182)
++-| -|-||+|.||..+.++|++.. |.+++-|-..+.| ....+.+.|....+.....+..............
T Consensus 166 VvaF-qTRNp~Hr~He~i~k~ale~~~~~lli~plvG~~k-~gd~~~~~r~~~y~~~~~~~~~~~~~~l~~l~~~m~yAG 243 (546)
T 2gks_A 166 IVAF-QTRNPMHRVHEELTKRAMEKVGGGLLLHPVVGLTK-PGDVDVYTRMRIYKVLYEKYYDKKKTILAFLPLAMRMAG 243 (546)
T ss_dssp EEEE-CCSSCCCHHHHHHHHHHHHHHTSEEEECCBCSBCC-TTSCCHHHHHHHHHHHHHHHSCTTTEEECBBCCBCCCCT
T ss_pred CEEE-EECCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCC-CCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC
T ss_conf 2466-63788976999999999985078779830578787-667887999999999985038877269953475434478
Q ss_pred ----CCCCCCCCCCCCEEEEEECCCCCC--------HHHHHHHHHHHHHHC--CCCCEE--------------EEEC---
Q ss_conf ----333221001497079994376520--------124677998987647--998689--------------9706---
Q gi|254780181|r 78 ----GLAVNLAKDISAQVIVRGLRDMTD--------FDYEMRMTSVNRCLC--PEIATI--------------ALFA--- 126 (182)
Q Consensus 78 ----~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~--~~~~~i--------------~l~~--- 126 (182)
......-.....-.+++|-+-... |........+..... -+.+.+ ....
T Consensus 244 PrEa~~hAiirkN~GcthfiVGRDHAG~g~~~~~~~fY~~~~a~~i~~~~~~~l~I~~i~~~~~~Yc~~c~~~v~~~~c~ 323 (546)
T 2gks_A 244 PREALWHGIIRRNYGATHFIVGRDHASPGKDSKGKPFYDPYEAQELFKKYEDEIGIKMVPFEELVYVPELDQYVEINEAK 323 (546)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECTTTTCCCBCTTSCBSSCTTHHHHHHHHHHHHHTCEEEECCCCEEETTTTEEECSCC--
T ss_pred CHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCHHHCCCCEEECCCEEEECCCCEEEECCCCC
T ss_conf 47899999998736985564056567877676676677836778999854222187301025308772039388767789
Q ss_pred --CCCCCCCCHHHHHH-HHHCCCC-HHHCCCHHHHHHHHHH
Q ss_conf --85721132699999-9985999-5583999999999999
Q gi|254780181|r 127 --KESSRYVTSTLIRH-LISIDAD-ITSFVPDPVCVFLKNI 163 (182)
Q Consensus 127 --~~~~~~ISST~IR~-~i~~g~~-i~~lVP~~V~~yIk~~ 163 (182)
......+|+|++|+ +++.|+. -..+.++.|++.|.+-
T Consensus 324 h~~~~~i~~sgt~~r~~lL~~G~~~P~~~~rpeV~~~L~~~ 364 (546)
T 2gks_A 324 KRNLKYINISGTEIRENFLKQGRKLPEWFTRPEVAEILAET 364 (546)
T ss_dssp -------------CTHHHHTTTCCCCTTTSCHHHHHHHHHH
T ss_pred CCCCCEEECCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 98643560573799999997799999100788999999985
No 37
>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae}
Probab=97.83 E-value=2.8e-05 Score=50.31 Aligned_cols=139 Identities=19% Similarity=0.167 Sum_probs=66.1
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHCC----EEEEECCCCCC-------CC---CCCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99658998784899999999997489----79996455888-------76---657898999999999764201335544
Q gi|254780181|r 5 AVYTGSFDPITNGHMDIIIQALSFVE----DLVIAIGCNSV-------KT---KGFLSIQERSELIKQSIFHFIPDSSNR 70 (182)
Q Consensus 5 gifgGsFdPiH~GHL~ia~~a~~~~D----~vii~~~~~p~-------k~---~~~~s~e~r~~m~~~a~~~~~~~~~~~ 70 (182)
.+--|.||=+|.||-.+++.+.+... ...+++-.++| +. ....+.++|.+.++....+........
T Consensus 23 VvtIG~FDGvHlGHq~li~~~~~~a~~~~~~~~v~TF~phP~~~~~~~~~~~~~~l~~~~ek~~~l~~~Gid~~~~~~F~ 102 (308)
T 3op1_A 23 VVVLGYFDGIHKGHQELFRVANKAARKDLLPIVVMTFNESPKIALEPYHPDLFLHILNPAERERKLKREGVEELYLLDFS 102 (308)
T ss_dssp EEEESCCSSCCHHHHHHHHHHHHHSSTTCCCEEEEEESSCTHHHHSCCCGGGGCBSSCHHHHHHHHHHHTCCEEEEECCC
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCCCCCHHCCCCCHHHHHHHHHHCCCCEEEEEECC
T ss_conf 99997172111899999999999999819978999767998998396785231125898999999987299789998468
Q ss_pred C--EEECCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE-CCCCCCCCCHHHHHHHHHCCC
Q ss_conf 1--242033333221001497079994376520124677998987647998689970-685721132699999998599
Q gi|254780181|r 71 V--SVISFEGLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIALF-AKESSRYVTSTLIRHLISIDA 146 (182)
Q Consensus 71 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~l~-~~~~~~~ISST~IR~~i~~g~ 146 (182)
. -..+...-............++.|.+-........ .....+... .+..... ....-..||||.||+.++.|.
T Consensus 103 ~~~a~ls~e~Fi~~L~~~l~~~~ivvG~DF~FG~~r~g-~~~~~~~~~--~~v~~v~~~~~~~~~ISST~IR~~l~~G~ 178 (308)
T 3op1_A 103 SQFASLTAQEFFATYIKAMNAKIIVAGFDYTFGSDKKT-AEDLKNYFD--GEVIIVPPVEDEKGKISSTRIRQAILDGN 178 (308)
T ss_dssp HHHHTCCHHHHHHHHHHHHTEEEEEEETTCCBTTTTBC-STTHHHHCS--SEEEEECCCBCSSCBCCHHHHHHHHHHTC
T ss_pred HHHHHCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHH-HHHHHHHCC--CEEEEECEEECCCCCEEHHHHHHHHHCCC
T ss_conf 88850899999999998558889998888577751034-899987559--52898220321686121799999998486
No 38
>1mrz_A Riboflavin kinase/FMN adenylyltransferase; rossmann fold, flavin binding domain, 6-stranded beta barrel, nucleotide binding domain; HET: CIT; 1.90A {Thermotoga maritima} SCOP: b.43.5.1 c.26.1.3 PDB: 1s4m_A* 1t6x_A* 1t6y_A* 1t6z_A* 2i1l_A
Probab=97.74 E-value=9.4e-05 Score=47.18 Aligned_cols=135 Identities=16% Similarity=0.162 Sum_probs=62.1
Q ss_pred EECCCCCCCCHHHHHHHHHHHHH-----CCEEEEECCCCC-----CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEC
Q ss_conf 96589987848999999999974-----897999645588-----87665789899999999976420133554412420
Q gi|254780181|r 6 VYTGSFDPITNGHMDIIIQALSF-----VEDLVIAIGCNS-----VKTKGFLSIQERSELIKQSIFHFIPDSSNRVSVIS 75 (182)
Q Consensus 6 ifgGsFdPiH~GHL~ia~~a~~~-----~D~vii~~~~~p-----~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~ 75 (182)
+--|.||=+|.||-.+++++.+. ..-+++.-...| .+.....+.++|.+.++........... .....+
T Consensus 3 vaIG~FDGvH~GHq~Li~~~~~~a~~~~~~~~v~tf~~~p~~~~~~~~~~l~~~~~r~~~l~~~g~~~vi~F~-~~~~ls 81 (293)
T 1mrz_A 3 VSIGVFDGVHIGHQKVLRTMKEIAFFRKDDSLIYTISYPPEYFLPDFPGLLMTVESRVEMLSRYARTVVLDFF-RIKDLT 81 (293)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHHHHHHTCCCEEEEESSCGGGGSTTCCCBSSCHHHHHHHHTTTSCEEEECHH-HHTTCC
T ss_pred EEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHCCCCCCCCCCHHHHHHHHHHHCCCEEEEHH-HHHHCC
T ss_conf 9995062013899999999999999709996999959697996999940148999999999872881454035-466379
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE-CCCCCCCCCHHHHHHHHHCCC
Q ss_conf 33333221001497079994376520124677998987647998689970-685721132699999998599
Q gi|254780181|r 76 FEGLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIALF-AKESSRYVTSTLIRHLISIDA 146 (182)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~l~-~~~~~~~ISST~IR~~i~~g~ 146 (182)
......... .....++.|.+-............. +... .+...+. ....-..||||.||+.++.|.
T Consensus 82 -~~~Fi~~ll-~~~~~ivvG~DfrFG~~r~G~~~~L-~~~~--~~v~~v~~~~~~~~~ISSt~IR~~i~~G~ 148 (293)
T 1mrz_A 82 -PEGFVERYL-SGVSAVVVGRDFRFGKNASGNASFL-RKKG--VEVYEIEDVVVQGKRVSSSLIRNLVQEGR 148 (293)
T ss_dssp -HHHHHHHHC-TTCCEEEEETTCCBSGGGCBCHHHH-HHTT--CEEEEECCCEETTEECCHHHHHHHHHTTC
T ss_pred -HHHHHHHHH-HCCCEEEEECCEECCCCCCCCHHHH-HCCC--EEEEEEEEECCCCEEECCHHHHHHHHCCC
T ss_conf -899999996-2898999943134167876766567-3477--07998420314995875199999887698
No 39
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.65 E-value=0.00072 Score=41.89 Aligned_cols=157 Identities=8% Similarity=-0.006 Sum_probs=74.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHC-CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCC---------
Q ss_conf 5899878489999999999748-979996455888766578989999999997642013355441242033---------
Q gi|254780181|r 8 TGSFDPITNGHMDIIIQALSFV-EDLVIAIGCNSVKTKGFLSIQERSELIKQSIFHFIPDSSNRVSVISFE--------- 77 (182)
Q Consensus 8 gGsFdPiH~GHL~ia~~a~~~~-D~vii~~~~~p~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~~~--------- 77 (182)
.-|=||+|.||..++++++... |-|++.|-... +.. ......++.....++..+..............
T Consensus 169 fqTRNp~HraHe~~~~~~~~~~~~~lli~~v~g~-~~~-~~~~~~~~~~~~~~~~~y~p~~~v~l~~l~~~~r~aGprEa 246 (552)
T 3cr8_A 169 WQARQPMHRAQYEFCLKSAIENEANLLLHPQVGG-DIT-EAPAYFGLVRSFLAIRDRFPAATTQLSLLPAPPPEASGRAL 246 (552)
T ss_dssp ECCSSCCCHHHHHHHHHHHHHTTCEEEECCBCCC-CTT-TCTTHHHHHHHHHHHGGGSCGGGEEECBBCSCCCCSCSHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCC-CCC-CCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHH
T ss_conf 4226899778999999999854886676034577-766-66469999999999986467664477124776566760777
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCC--------HHHHH----HHHHHHHHHC----CCCCEEEE--------EC----CCC
Q ss_conf 333221001497079994376520--------12467----7998987647----99868997--------06----857
Q gi|254780181|r 78 GLAVNLAKDISAQVIVRGLRDMTD--------FDYEM----RMTSVNRCLC----PEIATIAL--------FA----KES 129 (182)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~----~~~~~~~~l~----~~~~~i~l--------~~----~~~ 129 (182)
......-.....-.+++|-+-... |.... ........+. ...+.++. .. ...
T Consensus 247 ilhAiirkN~GcthfiVGRDHAGvg~~~~~~~~y~~~~a~~~~~~~~~~lgI~~v~~~~~~Yc~~c~~~~~~~~c~h~~~ 326 (552)
T 3cr8_A 247 LLRAIVARNFGCSLLIAGGEHQPDGGDCRRGEDLTQNRVDPSVAERAEKIGVRLIAYPRMVYVEDRAEHLPEAEAPQGAR 326 (552)
T ss_dssp HHHHHHHHHHTCSEEEC----------------------CCSSHHHHHHHTCEEECCCCEEEEGGGTEEEEGGGSCTTCC
T ss_pred HHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCEEECCCCEEEECCCCCCCCC
T ss_conf 77778887468876227977777776766765457422567877341004966742253589757765987777898663
Q ss_pred CCCCCHHHHHHHHHCCCC-HHHCCCHHHHHHHHHHHHH
Q ss_conf 211326999999985999-5583999999999999998
Q gi|254780181|r 130 SRYVTSTLIRHLISIDAD-ITSFVPDPVCVFLKNIVIS 166 (182)
Q Consensus 130 ~~~ISST~IR~~i~~g~~-i~~lVP~~V~~yIk~~~~~ 166 (182)
...||+|++|++++.|+. -..+.++.|++.|.+-+..
T Consensus 327 ~~~iSgt~lR~~L~~G~~pP~~f~rpEV~~~L~~~~~~ 364 (552)
T 3cr8_A 327 LLTLSGEEFQRRMRAGLKIPEWYSFPEVLAELHRQTPP 364 (552)
T ss_dssp EECCCHHHHHHHHTTTCCCCTTTSCHHHHHHHHHHSCC
T ss_pred EECCCHHHHHHHHHCCCCCCCHHCCCHHHHHHHHHHHH
T ss_conf 75568899999997699999120263278999987544
No 40
>2ejc_A Pantoate--beta-alanine ligase; X-RAY diffraction, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Thermotoga maritima}
Probab=95.22 E-value=0.025 Score=32.70 Aligned_cols=58 Identities=12% Similarity=0.170 Sum_probs=43.2
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCC-------CCCHHHHHHHHHHHHH
Q ss_conf 5999658998784899999999997489799964558887665-------7898999999999764
Q gi|254780181|r 3 RKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKG-------FLSIQERSELIKQSIF 61 (182)
Q Consensus 3 kigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p~k~~~-------~~s~e~r~~m~~~a~~ 61 (182)
+||+. .|.-=+|-||+.+++.|.+..|.+++-+..||..-.. +.+.+.-.+.++.+..
T Consensus 23 ~Ig~V-PTMGaLH~GHlsLI~~A~~~~d~vvVSIFVNP~QF~~~eD~~~YPr~~e~D~~~l~~~gv 87 (280)
T 2ejc_A 23 TIGFV-PTMGYLHEGHLSLVRRARAENDVVVVSIFVNPTQFGPNEDYERYPRDFERDRKLLEKENV 87 (280)
T ss_dssp CEEEE-EECSCCCHHHHHHHHHHHHHSSEEEEEECCCGGGCCTTSCGGGSCCCHHHHHHHHHTTTC
T ss_pred EEEEE-CCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 69998-387306599999999998638938999935754356763113799885888999997599
No 41
>1v8f_A Pantoate-beta-alanine ligase; rossmann fold, dimer, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: P6G; 1.90A {Thermus thermophilus} SCOP: c.26.1.4 PDB: 1ufv_A
Probab=94.09 E-value=0.042 Score=31.35 Aligned_cols=54 Identities=11% Similarity=0.169 Sum_probs=38.5
Q ss_pred CCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCC-------CCCCHHHHHHHHHHHHHHH
Q ss_conf 99878489999999999748979996455888766-------5789899999999976420
Q gi|254780181|r 10 SFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTK-------GFLSIQERSELIKQSIFHF 63 (182)
Q Consensus 10 sFdPiH~GHL~ia~~a~~~~D~vii~~~~~p~k~~-------~~~s~e~r~~m~~~a~~~~ 63 (182)
|--=.|-||+.++++|.+..|.+++-+..||..-. -+.+.+.-.+.++.+..+.
T Consensus 24 TMGaLH~GHlsLi~~A~~~~d~vvVSIFVNP~QF~~~eD~~~YPr~l~~D~~ll~~~gvD~ 84 (276)
T 1v8f_A 24 TMGYLHRGHLALVERARRENPFVVVSVFVNPLQFGPGEDYHRYPRDLERDRALLQEAGVDL 84 (276)
T ss_dssp ECSSCCHHHHHHHHHHHHHCSEEEEEECCCGGGCCTTSSTTTSCCCHHHHHHHHHHTTCSE
T ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHCCCCCHHHHHHHHHCCCCE
T ss_conf 8651759999999999976897899997777668984247658998276599998589979
No 42
>3n8h_A Pantothenate synthetase; alpha-beta sandwich, ligase, structural genomics, structural of infectious diseases; HET: MSE AMP GOL; 2.00A {Francisella tularensis subsp}
Probab=94.04 E-value=0.12 Score=28.70 Aligned_cols=59 Identities=15% Similarity=0.223 Sum_probs=41.8
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCC-------CCCHHHHHHHHHHHHHH
Q ss_conf 5999658998784899999999997489799964558887665-------78989999999997642
Q gi|254780181|r 3 RKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKG-------FLSIQERSELIKQSIFH 62 (182)
Q Consensus 3 kigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p~k~~~-------~~s~e~r~~m~~~a~~~ 62 (182)
|||+. .|--=+|-||+.++++|.+..|.+++-+..||..-+. +.+.+.-.+.++.+..+
T Consensus 25 ~IgfV-PTMGaLH~GHlsLI~~A~~~~d~vvVSIFVNP~QF~~~eD~~~YPr~le~D~~ll~~~gvd 90 (264)
T 3n8h_A 25 KIGFV-PTMGALHNGHISLIKKAKSENDVVIVSIFVNPTQFNNPNDYQTYPNQLQQDIQILASLDVD 90 (264)
T ss_dssp CEEEE-EECSSCCHHHHHHHHHHHHHCSEEEEEECCCGGGCSCHHHHHHSCCCHHHHHHHHHHTTCS
T ss_pred EEEEE-CCCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCHHHHHHCCHHHHHHHHHHHHCCCE
T ss_conf 09998-1861376999999999987499089999517112687566776966577789999976990
No 43
>1iho_A Pantoate--beta-alanine ligase; rossman fold, dimer, APO, high, KSMKS, flexible domains, multidomain; 1.70A {Escherichia coli} SCOP: c.26.1.4 PDB: 3mue_A
Probab=93.79 E-value=0.051 Score=30.88 Aligned_cols=60 Identities=20% Similarity=0.315 Sum_probs=41.2
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCC-------CCCHHHHHHHHHHHHHHH
Q ss_conf 5999658998784899999999997489799964558887665-------789899999999976420
Q gi|254780181|r 3 RKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKG-------FLSIQERSELIKQSIFHF 63 (182)
Q Consensus 3 kigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p~k~~~-------~~s~e~r~~m~~~a~~~~ 63 (182)
+||+.+ |--=+|-||+.++++|.+..|.+++.+.-||..-+. +.+.+.-.+.++.+..+.
T Consensus 23 ~IgfVP-TMGaLH~GHlsLi~~A~~~~~~vvvSIFVNP~QF~~~eD~~~YPr~~e~D~~ll~~~gvD~ 89 (283)
T 1iho_A 23 RVALVP-TMGNLHDGHMKLVDEAKARADVVVVSIFVNPMQFDRPEDLARYPRTLQEDCEKLNKRKVDL 89 (283)
T ss_dssp CEEEEE-ECSCCCHHHHHHHHHHHHHCSEEEEEECCCGGGCSSHHHHHHSCCCHHHHHHHHHHTTCSE
T ss_pred EEEEEC-CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCE
T ss_conf 399984-8630769999999999974893899995375347871443228998688889998639838
No 44
>3guz_A Pantothenate synthetase; pantothenate biosynthesis, substrate binding, competitive inhibition, rossmann fold; HET: PAF; 1.67A {Escherichia coli}
Probab=93.47 E-value=0.059 Score=30.49 Aligned_cols=58 Identities=19% Similarity=0.293 Sum_probs=39.6
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCC-------CCCHHHHHHHHHHHHH
Q ss_conf 5999658998784899999999997489799964558887665-------7898999999999764
Q gi|254780181|r 3 RKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKG-------FLSIQERSELIKQSIF 61 (182)
Q Consensus 3 kigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p~k~~~-------~~s~e~r~~m~~~a~~ 61 (182)
+||+.+ |--=+|-||+.++++|.+..|.+++.+..||..-+. +.+.+.-.+.++.+..
T Consensus 23 ~IgfVP-TMGaLH~GHlsLI~~A~~~~d~vvVSIFVNP~QF~~~eD~~~YPr~~~~D~~~l~~~gv 87 (176)
T 3guz_A 23 RVALVP-TMGNLHDGHMKLVDEAKARADVVAVSIFVNPMQFDRPEDLARYPRTLQEDCEKLNKRKV 87 (176)
T ss_dssp CEEEEE-ECSCCCGGGHHHHHHHHHTCSEEEEEECCCGGGCSCHHHHHHSCCCHHHHHHHHHHTTC
T ss_pred EEEEEC-CCCCHHHHHHHHHHHHHHHCCEEEEEEECCCHHCCCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 499983-87306599999999999759938999603703246666665499980778999997699
No 45
>3ag6_A Pantothenate synthetase; ATP-dependent enzyme, ATP-binding, nucleotide-binding, pantothenate biosynthesis; HET: PAJ PG4; 1.85A {Staphylococcus aureus} PDB: 3ag5_A* 2x3f_A*
Probab=93.45 E-value=0.057 Score=30.57 Aligned_cols=59 Identities=12% Similarity=0.208 Sum_probs=40.4
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCC-------CCCHHHHHHHHHHHHHHH
Q ss_conf 999658998784899999999997489799964558887665-------789899999999976420
Q gi|254780181|r 4 KAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKG-------FLSIQERSELIKQSIFHF 63 (182)
Q Consensus 4 igifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p~k~~~-------~~s~e~r~~m~~~a~~~~ 63 (182)
||+.+ |--=+|.||+.+++.|.+..|.+++-+-.||..-.. +.+.+.-.+.++.+..+.
T Consensus 25 igfVP-TMGaLH~GHlsLI~~A~~~~~~vvVSIFVNP~QF~~~eD~~~YPr~le~D~~~l~~~gvd~ 90 (283)
T 3ag6_A 25 IGFIP-TMGALHDGHLTMVRESVSTNDITIVSVFVNPLQFGPNEDFDAYPRQIDKDLELVSEVGADI 90 (283)
T ss_dssp EEEEE-ECSSCCHHHHHHHHHHHTTSSEEEEEECCCGGGCCTTSSTTTSCCCHHHHHHHHHHHTCSE
T ss_pred EEEEC-CCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCE
T ss_conf 99985-8853749999999999873897899998770224875431006999899999998479989
No 46
>3inn_A Pantothenate synthetase; ssgcid, SBRI, UW, decode, NIH, niaid, pantoate beta alanine ligase, ATP-binding, cytoplasm, ligase; HET: ATP; 2.10A {Brucella melitensis}
Probab=93.37 E-value=0.068 Score=30.13 Aligned_cols=60 Identities=10% Similarity=0.226 Sum_probs=40.9
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCC-------CCCHHHHHHHHHHHHHHH
Q ss_conf 5999658998784899999999997489799964558887665-------789899999999976420
Q gi|254780181|r 3 RKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKG-------FLSIQERSELIKQSIFHF 63 (182)
Q Consensus 3 kigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p~k~~~-------~~s~e~r~~m~~~a~~~~ 63 (182)
+||+.+ |--=+|-||+.+++.|.+..|.+++-+-.||..-.. +.+.+.-.++++.+..+.
T Consensus 44 ~IgfVP-TMGaLH~GHlsLI~~A~~~~d~vvVSIFVNP~QF~~~eD~~~YPr~le~D~~~l~~~gvD~ 110 (314)
T 3inn_A 44 KIGFVP-TMGYLHKGHLELVRRARVENDVTLVSIFVNPLQFGANEDLGRYPRDLERDAGLLHDAQVDY 110 (314)
T ss_dssp CEEEEE-ECSSCCHHHHHHHHHHHHHCSEEEEEECCCGGGSCTTSSTTTCCCCHHHHHHHHHHTTCSE
T ss_pred EEEEEC-CCCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCHHHHCCCCHHHHHHHHHHCCCCE
T ss_conf 599986-8620769999999999874994999997777667887307458998678589998669739
No 47
>3cov_A Pantothenate synthetase; pantothenate biosynthesis, enzymes, ligase, drug design, ATP-binding, cytoplasm, magnesium, metal-binding; 1.50A {Mycobacterium tuberculosis} SCOP: c.26.1.4 PDB: 3cow_A* 3coy_A* 3coz_A* 3imc_A* 3ime_A* 3img_A* 3iob_A* 3ioc_A* 3iod_A* 3ioe_A* 3iub_A* 3iue_A* 3ivc_A* 3ivg_A* 3ivx_A* 2a84_A* 1n2b_A* 1n2e_A* 1n2g_A* 1n2h_A* ...
Probab=91.26 E-value=0.14 Score=28.25 Aligned_cols=59 Identities=12% Similarity=0.136 Sum_probs=39.8
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHH-HCCEEEEECCCCCCCCCC-------CCCHHHHHHHHHHHHHH
Q ss_conf 5999658998784899999999997-489799964558887665-------78989999999997642
Q gi|254780181|r 3 RKAVYTGSFDPITNGHMDIIIQALS-FVEDLVIAIGCNSVKTKG-------FLSIQERSELIKQSIFH 62 (182)
Q Consensus 3 kigifgGsFdPiH~GHL~ia~~a~~-~~D~vii~~~~~p~k~~~-------~~s~e~r~~m~~~a~~~ 62 (182)
+||+. .|--=+|-||+.+++.|.+ ..|.+++-+--||..-.. +.+.+.-.+.++.+..+
T Consensus 34 ~ig~V-PTMGaLH~GHlsLI~~A~~~~~d~vvVSIFVNP~QF~~~eD~~~YPr~le~D~~~l~~~gvD 100 (301)
T 3cov_A 34 RVMLV-PTMGALHEGHLALVRAAKRVPGSVVVVSIFVNPMQFGAGGDLDAYPRTPDDDLAQLRAEGVE 100 (301)
T ss_dssp EEEEE-EECSCCCHHHHHHHHHHHTSTTEEEEEEECCCGGGCCSSSHHHHSCCCHHHHHHHHHHTTCC
T ss_pred EEEEE-ECCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHCCCCCCHHHHHHHHHHCCCE
T ss_conf 08999-68721759999999998652799799999627534787122011698817789999977993
No 48
>3mxt_A Pantothenate synthetase; alpha-beta-alpha, structural genomics, center for structural of infectious diseases, csgid, ligase; HET: MSE; 1.85A {Campylobacter jejuni subsp}
Probab=90.32 E-value=0.16 Score=27.95 Aligned_cols=59 Identities=8% Similarity=0.205 Sum_probs=38.1
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCC-------CCCHHHHHHHHHHHHHHH
Q ss_conf 5999658998784899999999997489799964558887665-------789899999999976420
Q gi|254780181|r 3 RKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKG-------FLSIQERSELIKQSIFHF 63 (182)
Q Consensus 3 kigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p~k~~~-------~~s~e~r~~m~~~a~~~~ 63 (182)
+||+.+ |--=+|-||+.++++|.+ .|.+++-+.-||..-.. +.+.+.-.+.++.+..+.
T Consensus 26 ~IgfVP-TMGaLH~GHlsLI~~A~~-~~~vvVSIFVNP~QF~~~eD~~~YPr~~~~D~~~l~~~gvd~ 91 (285)
T 3mxt_A 26 SIGYVP-TMGFLHDGHLSLVKHAKT-QDKVIVSIFVNPMQFGPNEDFSSYPRDLERDIKMCQDNGVDM 91 (285)
T ss_dssp CEEEEE-ECSSCCHHHHHHHHHHTT-SSEEEEEECCCGGGCCTTSCTTTSCCCHHHHHHHHHHTTCSE
T ss_pred EEEEEC-CCCCHHHHHHHHHHHHHH-CCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCE
T ss_conf 399984-863065999999999976-598699998361127876523469999789999998679989
No 49
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=86.27 E-value=0.42 Score=25.40 Aligned_cols=33 Identities=15% Similarity=0.228 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCCCCHHHH--HHHHHHHHHCCEEEEE-CCCCC
Q ss_conf 9659996589987848999--9999999748979996-45588
Q gi|254780181|r 1 MMRKAVYTGSFDPITNGHM--DIIIQALSFVEDLVIA-IGCNS 40 (182)
Q Consensus 1 MmkigifgGsFdPiH~GHL--~ia~~a~~~~D~vii~-~~~~p 40 (182)
||+|||+|| |=| ++++.|.++-=++++. +..++
T Consensus 1 ~~tigIlG~-------GqL~~ml~~aAk~lGi~v~v~d~~~~~ 36 (365)
T 2z04_A 1 MLTVGILGG-------GQLGWMTILEGRKLGFKFHVLEDKENA 36 (365)
T ss_dssp -CEEEEECC-------SHHHHHHHHHHGGGTCEEEEECSSSSC
T ss_pred CCEEEEECC-------CHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 989999867-------899999999999789989999569989
No 50
>1gsa_A Glutathione synthetase; ligase; HET: ADP GTT; 2.00A {Escherichia coli B} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=70.58 E-value=5.3 Score=18.88 Aligned_cols=36 Identities=8% Similarity=0.139 Sum_probs=28.8
Q ss_pred CCEEEEEC---CCCCCCCHHHHHHHHHHHHHCCEEEEEC
Q ss_conf 96599965---8998784899999999997489799964
Q gi|254780181|r 1 MMRKAVYT---GSFDPITNGHMDIIIQALSFVEDLVIAI 36 (182)
Q Consensus 1 Mmkigifg---GsFdPiH~GHL~ia~~a~~~~D~vii~~ 36 (182)
|||||+.- -++||=+-.=+.++++|.+.--++++..
T Consensus 1 mmki~fvmDpi~~i~~~~DTT~~L~~eA~kRGhev~~~~ 39 (316)
T 1gsa_A 1 MIKLGIVMDPIANINIKKDSSFAMLLEAQRRGYELHYME 39 (316)
T ss_dssp CCEEEEECSCGGGCCTTTCHHHHHHHHHHHTTCEEEEEC
T ss_pred CCEEEEEECCHHHCCCCCCHHHHHHHHHHHCCCEEEEEE
T ss_conf 938999937878769877669999999998799799981
No 51
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=69.27 E-value=5.6 Score=18.73 Aligned_cols=28 Identities=18% Similarity=0.132 Sum_probs=23.0
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9659996589987848999999999974
Q gi|254780181|r 1 MMRKAVYTGSFDPITNGHMDIIIQALSF 28 (182)
Q Consensus 1 MmkigifgGsFdPiH~GHL~ia~~a~~~ 28 (182)
|+||+|||||=.+...-+...|++..+.
T Consensus 13 ~k~V~VF~gs~~~~~~~~~~~A~~Lg~~ 40 (215)
T 2a33_A 13 FRRICVFCGSSQGKKSSYQDAAVDLGNE 40 (215)
T ss_dssp CSEEEEECCSSCCSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 8539998867899597899999999999
No 52
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=68.28 E-value=4.6 Score=19.23 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=13.7
Q ss_pred CCEEEE--ECCCCCCCCHHHHHHHHH
Q ss_conf 965999--658998784899999999
Q gi|254780181|r 1 MMRKAV--YTGSFDPITNGHMDIIIQ 24 (182)
Q Consensus 1 Mmkigi--fgGsFdPiH~GHL~ia~~ 24 (182)
|||||| |+|.+ .-|+...++
T Consensus 1 m~kIGvl~~~Gn~----~s~~~al~~ 22 (196)
T 2nv0_A 1 MLTIGVLGLQGAV----REHIHAIEA 22 (196)
T ss_dssp CCEEEEECSSSCC----HHHHHHHHH
T ss_pred CCEEEEEECCCCH----HHHHHHHHH
T ss_conf 9499999458829----999999998
No 53
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=67.66 E-value=5.5 Score=18.78 Aligned_cols=27 Identities=15% Similarity=-0.016 Sum_probs=20.7
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 965999658998784899999999997
Q gi|254780181|r 1 MMRKAVYTGSFDPITNGHMDIIIQALS 27 (182)
Q Consensus 1 MmkigifgGsFdPiH~GHL~ia~~a~~ 27 (182)
|++|++||||=.+...-+...|++..+
T Consensus 1 mk~I~Vf~gs~~~~~~~~~~~a~~lg~ 27 (191)
T 1t35_A 1 MKTICVFAGSNPGGNEAYKRKAAELGV 27 (191)
T ss_dssp CCEEEEECCSSCCSSTHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 977999854799969689999999999
No 54
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=62.81 E-value=5.5 Score=18.78 Aligned_cols=32 Identities=9% Similarity=0.134 Sum_probs=19.6
Q ss_pred CCEEEEECCCCCCCCHHHH--HHHHHHHHHCCEEE-EECCCC
Q ss_conf 9659996589987848999--99999997489799-964558
Q gi|254780181|r 1 MMRKAVYTGSFDPITNGHM--DIIIQALSFVEDLV-IAIGCN 39 (182)
Q Consensus 1 MmkigifgGsFdPiH~GHL--~ia~~a~~~~D~vi-i~~~~~ 39 (182)
||||||.|| |-| ++++.|.++-=+++ +-+..+
T Consensus 1 MKkv~IlG~-------GQLgrm~a~aA~~lG~~v~~~~~d~~ 35 (355)
T 3eth_A 1 MKQVCVLGN-------GQLGRMLRQAGEPLGIAVWPVGLDAE 35 (355)
T ss_dssp CCEEEEESC-------SHHHHHHHHHHGGGTCEEEEECTTCC
T ss_pred CCEEEEECC-------CHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 999999879-------89999999999978998999817999
No 55
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=61.91 E-value=7.7 Score=17.91 Aligned_cols=29 Identities=14% Similarity=0.066 Sum_probs=17.5
Q ss_pred CCHHHHHHHHHCCCCHHHCCCHHHHHHHHHH
Q ss_conf 3269999999859995583999999999999
Q gi|254780181|r 133 VTSTLIRHLISIDADITSFVPDPVCVFLKNI 163 (182)
Q Consensus 133 ISST~IR~~i~~g~~i~~lVP~~V~~yIk~~ 163 (182)
-+.+.+.+++..- -..++|+++..+.+.+
T Consensus 161 dt~~~l~~rl~~~--e~~ll~~~i~~i~~~~ 189 (216)
T 2ywr_A 161 DDENTLADRILKW--EHKILPQTVQWFAQDR 189 (216)
T ss_dssp CCHHHHHHHHHHH--HHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHH--HHHHHHHHHHHHHHCC
T ss_conf 9999999999999--9999999999998099
No 56
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=57.76 E-value=9.3 Score=17.42 Aligned_cols=28 Identities=18% Similarity=0.127 Sum_probs=22.6
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9659996589987848999999999974
Q gi|254780181|r 1 MMRKAVYTGSFDPITNGHMDIIIQALSF 28 (182)
Q Consensus 1 MmkigifgGsFdPiH~GHL~ia~~a~~~ 28 (182)
|+||+|||||=.+.-.-+...|++..+.
T Consensus 9 ~k~V~VF~gS~~~~~~~~~~~a~~lG~~ 36 (216)
T 1ydh_A 9 FRKICVFCGSHSGHREVFSDAAIELGNE 36 (216)
T ss_dssp CSEEEEECCSCCCSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 8539998757899693899999999999
No 57
>1z69_A COG2141, coenzyme F420-dependent N(5),N(10)- methylenetetrahydromethanopterin reductase; (alpha, beta)8 barrel, oxidoreductase; HET: F42 1PG; 2.61A {Methanosarcina barkeri}
Probab=49.84 E-value=12 Score=16.65 Aligned_cols=35 Identities=11% Similarity=-0.084 Sum_probs=26.9
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHH-CCEEEEECC
Q ss_conf 659996589987848999999999974-897999645
Q gi|254780181|r 2 MRKAVYTGSFDPITNGHMDIIIQALSF-VEDLVIAIG 37 (182)
Q Consensus 2 mkigifgGsFdPiH~GHL~ia~~a~~~-~D~vii~~~ 37 (182)
||+|||.-..+|. ...+++|+.|-+. ||.+|+.=.
T Consensus 1 M~~gi~~~p~~~~-~~~~~~a~~ae~~Gf~~~~~~eh 36 (327)
T 1z69_A 1 MKFGIEFVPSDPA-LKIAYYAKLSEQQGFDHVWITDH 36 (327)
T ss_dssp CEEEEEECTTSCH-HHHHHHHHHHHHTTCSEEEECCC
T ss_pred CEEEEEECCCCCH-HHHHHHHHHHHHCCCCEEEECCC
T ss_conf 9457981898979-99999999999849999998855
No 58
>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.25A {Escherichia coli} SCOP: d.159.1.7
Probab=48.45 E-value=13 Score=16.52 Aligned_cols=29 Identities=24% Similarity=0.302 Sum_probs=20.6
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHH-----CCEEEE
Q ss_conf 9659996589987848999999999974-----897999
Q gi|254780181|r 1 MMRKAVYTGSFDPITNGHMDIIIQALSF-----VEDLVI 34 (182)
Q Consensus 1 MmkigifgGsFdPiH~GHL~ia~~a~~~-----~D~vii 34 (182)
|||||+++-+ | |-+...+++++. .|.+++
T Consensus 25 mMki~viSDi----H-gn~~ale~vl~~~~~~~~D~ii~ 58 (208)
T 1su1_A 25 MMKLMFASDI----H-GSLPATERVLELFAQSGAQWLVI 58 (208)
T ss_dssp CCEEEEECCC----T-TBHHHHHHHHHHHHHHTCSEEEE
T ss_pred CCEEEEEEEC----C-CCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 3189999316----8-99899999999987569988999
No 59
>1f07_A Coenzyme F420-dependent N5,N10- methylenetetrahydromethanopterin reductase; (beta, alpha)8 barrel, TIM barrel; HET: MPO; 2.00A {Methanothermobacterthermautotrophicus} SCOP: c.1.16.3
Probab=48.07 E-value=13 Score=16.48 Aligned_cols=35 Identities=17% Similarity=0.078 Sum_probs=23.2
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHH-CCEEEEECC
Q ss_conf 659996589987848999999999974-897999645
Q gi|254780181|r 2 MRKAVYTGSFDPITNGHMDIIIQALSF-VEDLVIAIG 37 (182)
Q Consensus 2 mkigifgGsFdPiH~GHL~ia~~a~~~-~D~vii~~~ 37 (182)
||+||+.....|+..- +.+|+.|-+. ||.+|+.-.
T Consensus 1 Mkfg~~~~~~~~~~~~-~~~a~~Ae~~Gf~~~w~~eh 36 (321)
T 1f07_A 1 MKFGIEFVPNEPIEKI-VKLVKLAEDVGFEYAWITDH 36 (321)
T ss_dssp CEEEEEECSSSCHHHH-HHHHHHHHHTTCCEEEECCC
T ss_pred CEEEEEECCCCCHHHH-HHHHHHHHHCCCCEEEECCC
T ss_conf 9369980798989999-99999999849999998856
No 60
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=45.97 E-value=14 Score=16.28 Aligned_cols=40 Identities=28% Similarity=0.366 Sum_probs=24.6
Q ss_pred CCEEEEE----CCCCCCCCHHHHH---H-----HHHHHHHCCEEEEECCCCCC
Q ss_conf 9659996----5899878489999---9-----99999748979996455888
Q gi|254780181|r 1 MMRKAVY----TGSFDPITNGHMD---I-----IIQALSFVEDLVIAIGCNSV 41 (182)
Q Consensus 1 Mmkigif----gGsFdPiH~GHL~---i-----a~~a~~~~D~vii~~~~~p~ 41 (182)
|||.-|- --+ .++|.||+. + +.+....-..|++++|...|
T Consensus 1 m~k~~Ittp~Py~N-G~lHiGH~~~~~l~aDi~~Ry~rm~G~~v~~~~GtDeH 52 (722)
T 1rqg_A 1 MVRYMVTSALPYAN-GPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEH 52 (722)
T ss_dssp CCEEEEEECCCBTT-SCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCC
T ss_pred CCEEEEECCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECEECCC
T ss_conf 96499965898989-88566743337899999999998079955863866620
No 61
>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structural genomics, JCSG, PSI, protein structure initiative; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1
Probab=44.74 E-value=7.3 Score=18.02 Aligned_cols=32 Identities=9% Similarity=0.133 Sum_probs=18.0
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHC--CEEEEECC
Q ss_conf 96599965899878489999999999748--97999645
Q gi|254780181|r 1 MMRKAVYTGSFDPITNGHMDIIIQALSFV--EDLVIAIG 37 (182)
Q Consensus 1 MmkigifgGsFdPiH~GHL~ia~~a~~~~--D~vii~~~ 37 (182)
|||+||.|+|= ..=..+++ .+..+ .++..+.+
T Consensus 13 MikVaIvGATG----~VG~eli~-lL~~hP~~el~~laS 46 (351)
T 1vkn_A 13 MIRAGIIGATG----YTGLELVR-LLKNHPEAKITYLSS 46 (351)
T ss_dssp CEEEEEESTTS----HHHHHHHH-HHHHCTTEEEEEEEC
T ss_pred EEEEEEECCCH----HHHHHHHH-HHHCCCCCEEEEEEC
T ss_conf 66999989560----99999999-997599887999978
No 62
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=42.99 E-value=9 Score=17.49 Aligned_cols=30 Identities=13% Similarity=0.221 Sum_probs=21.1
Q ss_pred CCEEEEECCCCCCCCHHHH--HHHHHHHHHCCEEEEEC
Q ss_conf 9659996589987848999--99999997489799964
Q gi|254780181|r 1 MMRKAVYTGSFDPITNGHM--DIIIQALSFVEDLVIAI 36 (182)
Q Consensus 1 MmkigifgGsFdPiH~GHL--~ia~~a~~~~D~vii~~ 36 (182)
||||.|+||| |.+ .+++.+++.--+|..+.
T Consensus 4 m~KIlItGat------G~iG~~l~~~Ll~~g~~V~~l~ 35 (227)
T 3dhn_A 4 VKKIVLIGAS------GFVGSALLNEALNRGFEVTAVV 35 (227)
T ss_dssp CCEEEEETCC------HHHHHHHHHHHHTTTCEEEEEC
T ss_pred CCEEEEECCC------CHHHHHHHHHHHHCCCEEEEEE
T ss_conf 9999998899------8899999999997849899998
No 63
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus HB8} SCOP: c.129.1.1
Probab=40.55 E-value=17 Score=15.78 Aligned_cols=26 Identities=15% Similarity=-0.070 Sum_probs=18.7
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 96599965899878489999999999
Q gi|254780181|r 1 MMRKAVYTGSFDPITNGHMDIIIQAL 26 (182)
Q Consensus 1 MmkigifgGsFdPiH~GHL~ia~~a~ 26 (182)
|++|++||||-.....-+...|++.-
T Consensus 1 mk~V~Vfgss~~~~~~~~~~~a~~lG 26 (171)
T 1weh_A 1 MRLLAVFVSSRLSPEDPLYARWVRYG 26 (171)
T ss_dssp CEEEEEECCSSCCTTSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCCCHHHHHHHHHH
T ss_conf 98899992178998988999999999
No 64
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=40.12 E-value=18 Score=15.74 Aligned_cols=34 Identities=12% Similarity=0.158 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCCCCHHHH--HHHHHHHHHCCEEEEE-CCCCCC
Q ss_conf 9659996589987848999--9999999748979996-455888
Q gi|254780181|r 1 MMRKAVYTGSFDPITNGHM--DIIIQALSFVEDLVIA-IGCNSV 41 (182)
Q Consensus 1 MmkigifgGsFdPiH~GHL--~ia~~a~~~~D~vii~-~~~~p~ 41 (182)
++||||+|| |-| +++..|.++-=++++. +...|.
T Consensus 24 ~k~IgIlG~-------GQLg~ml~~aA~~LGi~v~vld~~~~pa 60 (403)
T 3k5i_A 24 SRKVGVLGG-------GQLGRMLVESANRLNIQVNVLDADNSPA 60 (403)
T ss_dssp CCEEEEECC-------SHHHHHHHHHHHHHTCEEEEEESTTCTT
T ss_pred CCEEEEECC-------CHHHHHHHHHHHHCCCEEEEEECCCCCH
T ss_conf 988999868-------7999999999997899899996899986
No 65
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 3.00A {Aquifex aeolicus VF5}
Probab=38.56 E-value=11 Score=17.06 Aligned_cols=24 Identities=13% Similarity=0.050 Sum_probs=18.2
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9659996589987848999999999974
Q gi|254780181|r 1 MMRKAVYTGSFDPITNGHMDIIIQALSF 28 (182)
Q Consensus 1 MmkigifgGsFdPiH~GHL~ia~~a~~~ 28 (182)
|+||||-||. =-|==.+++.+.+.
T Consensus 1 M~kIgItG~i----GSGKSTv~~~l~~~ 24 (204)
T 2if2_A 1 MKRIGLTGNI----GCGKSTVAQMFREL 24 (204)
T ss_dssp CCEEEEEECT----TSSHHHHHHHHHHT
T ss_pred CEEEEEECCC----CCCHHHHHHHHHHC
T ss_conf 9499997999----77799999999987
No 66
>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*
Probab=37.09 E-value=13 Score=16.62 Aligned_cols=34 Identities=6% Similarity=-0.187 Sum_probs=19.6
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHH--C--CEEEEECCC
Q ss_conf 9659996589987848999999999974--8--979996455
Q gi|254780181|r 1 MMRKAVYTGSFDPITNGHMDIIIQALSF--V--EDLVIAIGC 38 (182)
Q Consensus 1 MmkigifgGsFdPiH~GHL~ia~~a~~~--~--D~vii~~~~ 38 (182)
|+|+||.|+| =+.=.++++-.++. | -++..+.+.
T Consensus 1 M~kVaIvGAt----Gy~G~eLirlL~~h~~~p~~el~~~~S~ 38 (367)
T 1t4b_A 1 MQNVGFIGWR----GMVGSVLMQRMVEERDFDAIRPVFFSTS 38 (367)
T ss_dssp CCEEEEESTT----SHHHHHHHHHHHHTTGGGGSEEEEEESS
T ss_pred CCEEEEECCC----CHHHHHHHHHHHHCCCCCCEEEEEEECC
T ss_conf 9689996872----2999999999984679985279999840
No 67
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*
Probab=36.06 E-value=21 Score=15.35 Aligned_cols=47 Identities=9% Similarity=0.030 Sum_probs=25.8
Q ss_pred CEEEE----ECCCCCCCCHHHHHHHHHHHHHC-C--EEEEECC-CCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 65999----65899878489999999999748-9--7999645-58887665789899999999976
Q gi|254780181|r 2 MRKAV----YTGSFDPITNGHMDIIIQALSFV-E--DLVIAIG-CNSVKTKGFLSIQERSELIKQSI 60 (182)
Q Consensus 2 mkigi----fgGsFdPiH~GHL~ia~~a~~~~-D--~vii~~~-~~p~k~~~~~s~e~r~~m~~~a~ 60 (182)
||||| .|| |.+.++..+.+ + -+++.-. ..|. ...|.|+-...+....
T Consensus 1 mkIgvfDSGiGG---------ltv~~~l~~~~p~~~~iy~~D~~~~PY---G~ks~e~i~~~~~~~~ 55 (254)
T 1b73_A 1 MKIGIFDSGVGG---------LTVLKAIRNRYRKVDIVYLGDTARVPY---GIRSKDTIIRYSLECA 55 (254)
T ss_dssp CEEEEEESSSGG---------GTHHHHHHHHSTTCEEEEEECTTTCCC---TTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCH---------HHHHHHHHHHCCCCCEEEEECCCCCCC---CCCCHHHHHHHHHHHH
T ss_conf 979999489867---------999999999789998899946888999---9899999999999999
No 68
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, metal-binding, nucleotide-binding; HET: CIT; 1.40A {Escherichia coli k-12} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=35.91 E-value=21 Score=15.34 Aligned_cols=30 Identities=13% Similarity=0.072 Sum_probs=18.6
Q ss_pred CCCCHHHHH------H-HHHHHHHCCEEEEECCCCCC
Q ss_conf 878489999------9-99999748979996455888
Q gi|254780181|r 12 DPITNGHMD------I-IIQALSFVEDLVIAIGCNSV 41 (182)
Q Consensus 12 dPiH~GHL~------i-a~~a~~~~D~vii~~~~~p~ 41 (182)
-++|+||+. + +.+....-..|+++++...+
T Consensus 31 G~lHlGHa~~~~~~Di~~Ry~r~~G~~v~~~~G~D~~ 67 (560)
T 3h99_A 31 GSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAH 67 (560)
T ss_dssp SCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECEECCC
T ss_conf 9611325587999999999999469954550704557
No 69
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=34.81 E-value=22 Score=15.23 Aligned_cols=58 Identities=14% Similarity=0.121 Sum_probs=32.5
Q ss_pred EEEECC---CCCCCCHHHHHHHHH---HHHHCCEEEEECCCC------CC---CCCCCCCHHHHHHHHHHHHH
Q ss_conf 999658---998784899999999---997489799964558------88---76657898999999999764
Q gi|254780181|r 4 KAVYTG---SFDPITNGHMDIIIQ---ALSFVEDLVIAIGCN------SV---KTKGFLSIQERSELIKQSIF 61 (182)
Q Consensus 4 igifgG---sFdPiH~GHL~ia~~---a~~~~D~vii~~~~~------p~---k~~~~~s~e~r~~m~~~a~~ 61 (182)
+.+|-| |-+.+|.|||..... ..+....++++.+.. |. ......+.+...+..+....
T Consensus 34 ~~~Y~G~DPTa~sLHlGhlv~l~~l~~~q~~G~~~v~LiG~~T~~IGDPsgk~~~r~~l~~~~v~~n~~~~~~ 106 (322)
T 2yxn_A 34 IALVCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRK 106 (322)
T ss_dssp CEEEEEECCSSSSCBHHHHHHHHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 6799806799875308789999999999985990389953521684599886400004889999999999999
No 70
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, anticodon recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=34.75 E-value=22 Score=15.22 Aligned_cols=60 Identities=20% Similarity=0.163 Sum_probs=30.5
Q ss_pred EEEEECC---CCCCCCHHHHHHHHHHH---HHCC-EEEEECCCCCCC-CCCCCCHHHHHHHHHHHHHHH
Q ss_conf 5999658---99878489999999999---7489-799964558887-665789899999999976420
Q gi|254780181|r 3 RKAVYTG---SFDPITNGHMDIIIQAL---SFVE-DLVIAIGCNSVK-TKGFLSIQERSELIKQSIFHF 63 (182)
Q Consensus 3 kigifgG---sFdPiH~GHL~ia~~a~---~~~D-~vii~~~~~p~k-~~~~~s~e~r~~m~~~a~~~~ 63 (182)
+..||-| |=+|+|+||+..+..+. +.++ .++|..+.. .+ .....+.++........+..+
T Consensus 155 pf~vytG~~PSg~sLHLGHli~~~~~k~lQ~~g~~~v~I~IaD~-ea~~~~~~~~ee~~~~~~e~i~~~ 222 (477)
T 1r6t_A 155 PFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDD-EKYLWKDLTLDQAYGDAVENAKDI 222 (477)
T ss_dssp CEEEEEEECCCTTCCBGGGHHHHHHHHHHHHHHTCCEEEEECHH-HHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCH-HHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 83899585799854369999999999999980698536884153-541378999999999999999999
No 71
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP: d.159.1.5 PDB: 2gju_A
Probab=34.50 E-value=20 Score=15.40 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=15.8
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 965999658998784899999999997
Q gi|254780181|r 1 MMRKAVYTGSFDPITNGHMDIIIQALS 27 (182)
Q Consensus 1 MmkigifgGsFdPiH~GHL~ia~~a~~ 27 (182)
|+||+++|. +| |.+...+.+++
T Consensus 1 m~~I~visD----iH-g~~~~l~~~l~ 22 (252)
T 1nnw_A 1 MVYVAVLAN----IA-GNLPALTAALS 22 (252)
T ss_dssp -CEEEEEEC----CT-TCHHHHHHHHH
T ss_pred CCEEEEEEC----CC-CCHHHHHHHHH
T ss_conf 978999973----03-59899999999
No 72
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=34.13 E-value=15 Score=16.16 Aligned_cols=30 Identities=13% Similarity=0.326 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCCCCHHHH--HHHHHHHHHCCEEEEEC
Q ss_conf 9659996589987848999--99999997489799964
Q gi|254780181|r 1 MMRKAVYTGSFDPITNGHM--DIIIQALSFVEDLVIAI 36 (182)
Q Consensus 1 MmkigifgGsFdPiH~GHL--~ia~~a~~~~D~vii~~ 36 (182)
|+||.|+||| |++ .+++++++.--+|....
T Consensus 3 ~kkIlV~Gat------G~iG~~l~~~ll~~g~~V~~~~ 34 (206)
T 1hdo_A 3 VKKIAIFGAT------GQTGLTTLAQAVQAGYEVTVLV 34 (206)
T ss_dssp CCEEEEESTT------SHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEECCC------CHHHHHHHHHHHHCCCEEEEEE
T ss_conf 8889999998------6899999999997869899998
No 73
>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A
Probab=32.20 E-value=15 Score=16.14 Aligned_cols=10 Identities=20% Similarity=0.331 Sum_probs=9.3
Q ss_pred CCEEEEECCC
Q ss_conf 9659996589
Q gi|254780181|r 1 MMRKAVYTGS 10 (182)
Q Consensus 1 MmkigifgGs 10 (182)
|||+||.|.|
T Consensus 4 m~kVAIvGAT 13 (337)
T 3dr3_A 4 MLNTLIVGAS 13 (337)
T ss_dssp CEEEEEETTT
T ss_pred CCEEEEECCC
T ss_conf 5099999933
No 74
>1luc_A Bacterial luciferase; monooxygenase, flavoprotein; 1.50A {Vibrio harveyi} SCOP: c.1.16.1 PDB: 1brl_A 3fgc_A*
Probab=29.89 E-value=26 Score=14.74 Aligned_cols=35 Identities=6% Similarity=0.086 Sum_probs=25.0
Q ss_pred CEEEEECCCCCCCCHHHH-------HHHHHHHHH-CCEEEEEC
Q ss_conf 659996589987848999-------999999974-89799964
Q gi|254780181|r 2 MRKAVYTGSFDPITNGHM-------DIIIQALSF-VEDLVIAI 36 (182)
Q Consensus 2 mkigifgGsFdPiH~GHL-------~ia~~a~~~-~D~vii~~ 36 (182)
||.|+|.-+++|.+.+.- ++|+.|-++ ||.+|+.=
T Consensus 1 M~fg~f~~~~~~~~~~~~~~~~~~~e~a~~Ae~lGf~~~~~~e 43 (355)
T 1luc_A 1 MKFGNFLLTYQPPELSQTEVMKRLVNLGKASEGCGFDTVWLLE 43 (355)
T ss_dssp CEEEEEECCCCCTTCCHHHHHHHHHHHHHHTGGGTCSEEEECC
T ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 9257873788999979999999999999999987998999722
No 75
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural genomics of pathogenic protozoa, MSGPP; 3.00A {Entamoeba histolytica}
Probab=29.68 E-value=23 Score=15.02 Aligned_cols=26 Identities=12% Similarity=-0.022 Sum_probs=16.5
Q ss_pred CCCHHHHHHHHHHH---HHCC-EEEEECCC
Q ss_conf 78489999999999---7489-79996455
Q gi|254780181|r 13 PITNGHMDIIIQAL---SFVE-DLVIAIGC 38 (182)
Q Consensus 13 PiH~GHL~ia~~a~---~~~D-~vii~~~~ 38 (182)
++|+||+..+.... +.++ .++|..+.
T Consensus 94 ~lHLGh~i~~~~~k~lQ~~~~~~v~I~iaD 123 (386)
T 3hzr_A 94 EVALEEYITLEFARYLQDAFNIQVIIQILD 123 (386)
T ss_dssp SCBGGGHHHHHHHHHHHHHHCCEEEEEECH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 708989999999999997679759999744
No 76
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, anticodon recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=28.60 E-value=27 Score=14.60 Aligned_cols=55 Identities=20% Similarity=0.167 Sum_probs=27.0
Q ss_pred EEEECC---CCCCCCHHHHHHHHHH---HHHCC-EEEEECCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 999658---9987848999999999---97489-7999645588876657898999999999
Q gi|254780181|r 4 KAVYTG---SFDPITNGHMDIIIQA---LSFVE-DLVIAIGCNSVKTKGFLSIQERSELIKQ 58 (182)
Q Consensus 4 igifgG---sFdPiH~GHL~ia~~a---~~~~D-~vii~~~~~p~k~~~~~s~e~r~~m~~~ 58 (182)
..+|-| |=+|+|+||+..+..+ .+.++ .++|..+...-......+.+........
T Consensus 109 f~vytG~~PSg~~lHLGH~i~~~~~k~lQ~~g~~~v~I~iaD~ea~~~~~~~~ee~~~~~~e 170 (437)
T 1r6u_A 109 FYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVE 170 (437)
T ss_dssp EEEEEEECCCSSCCBHHHHHHHHHHHHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHH
T ss_pred EEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHCCCCCCHHHHHHHHHH
T ss_conf 58995337898753099999999999999706985478861348651589999999999999
No 77
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*
Probab=28.50 E-value=17 Score=15.92 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=18.0
Q ss_pred CCEEEEECCCCCCCCHHHH-HHHHHHHHHC
Q ss_conf 9659996589987848999-9999999748
Q gi|254780181|r 1 MMRKAVYTGSFDPITNGHM-DIIIQALSFV 29 (182)
Q Consensus 1 MmkigifgGsFdPiH~GHL-~ia~~a~~~~ 29 (182)
|+||+||-||- .|.- .+|+...+.+
T Consensus 1 M~KI~I~YgS~----tGnte~vA~~i~~~l 26 (164)
T 2bmv_A 1 MGKIGIFFGTD----SGNAEAIAEKISKAI 26 (164)
T ss_dssp -CCEEEEECCS----SSHHHHHHHHHHHHH
T ss_pred CCEEEEEEECC----CCHHHHHHHHHHHHC
T ss_conf 98399999999----747999999999866
No 78
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP- binding, ligase, mitochondrion, nucleotide-binding; HET: YSA; 2.20A {Homo sapiens}
Probab=27.08 E-value=29 Score=14.44 Aligned_cols=33 Identities=18% Similarity=0.445 Sum_probs=20.8
Q ss_pred EEECC---CCCCCCHHHHHHHHHH---HHHCCEEEEECC
Q ss_conf 99658---9987848999999999---974897999645
Q gi|254780181|r 5 AVYTG---SFDPITNGHMDIIIQA---LSFVEDLVIAIG 37 (182)
Q Consensus 5 gifgG---sFdPiH~GHL~ia~~a---~~~~D~vii~~~ 37 (182)
.+|-| |-+.+|.|||..+... .+....++++.+
T Consensus 48 ~vY~G~DPT~~sLHlGhlv~l~~l~~~q~~G~~~ivLiG 86 (356)
T 2pid_A 48 TIYCGFDPTADSLHVGHLLALLGLFHLQRAGHNVIALVG 86 (356)
T ss_dssp EEEEEECCSSSSCBHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 799815789875309889999999999986998999967
No 79
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Probab=26.29 E-value=23 Score=15.07 Aligned_cols=32 Identities=19% Similarity=0.469 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCCCHHHH--HHHHHHHHHCCEEEEECCCCC
Q ss_conf 659996589987848999--999999974897999645588
Q gi|254780181|r 2 MRKAVYTGSFDPITNGHM--DIIIQALSFVEDLVIAIGCNS 40 (182)
Q Consensus 2 mkigifgGsFdPiH~GHL--~ia~~a~~~~D~vii~~~~~p 40 (182)
|||||.||+ |.+ .+|....+.--+|.+. +.+|
T Consensus 1 MkI~iigGa------G~iG~alA~~la~~G~~V~l~-~R~~ 34 (212)
T 1jay_A 1 MRVALLGGT------GNLGKGLALRLATLGHEIVVG-SRRE 34 (212)
T ss_dssp CEEEEETTT------SHHHHHHHHHHHTTTCEEEEE-ESSH
T ss_pred CEEEEEECC------HHHHHHHHHHHHHCCCEEEEE-ECCH
T ss_conf 979999484------599999999999889989999-6999
No 80
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=26.16 E-value=30 Score=14.34 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=20.8
Q ss_pred CEEEEE-CCCCCCCCHHHH----HHHHHHHHHCCEEEEEC
Q ss_conf 659996-589987848999----99999997489799964
Q gi|254780181|r 2 MRKAVY-TGSFDPITNGHM----DIIIQALSFVEDLVIAI 36 (182)
Q Consensus 2 mkigif-gGsFdPiH~GHL----~ia~~a~~~~D~vii~~ 36 (182)
|||.|+ +|| -||+ .+|++..+.--+|.|+.
T Consensus 1 M~il~~~~gt-----~Ghv~P~lala~~L~~~Gh~V~~~~ 35 (415)
T 1iir_A 1 MRVLLATCGS-----RGDTEPLVALAVRVRDLGADVRMCA 35 (415)
T ss_dssp CEEEEECCSC-----HHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEECCCC-----HHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 9799988986-----4689999999999998799899995
No 81
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei}
Probab=26.16 E-value=24 Score=14.91 Aligned_cols=61 Identities=16% Similarity=0.180 Sum_probs=29.0
Q ss_pred EEEEECC---CCCCCCHHHHHHHHHHH---HHCC-EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 5999658---99878489999999999---7489-799964558887665789899999999976420
Q gi|254780181|r 3 RKAVYTG---SFDPITNGHMDIIIQAL---SFVE-DLVIAIGCNSVKTKGFLSIQERSELIKQSIFHF 63 (182)
Q Consensus 3 kigifgG---sFdPiH~GHL~ia~~a~---~~~D-~vii~~~~~p~k~~~~~s~e~r~~m~~~a~~~~ 63 (182)
+..+|-| |=+|+|+||+..+.... ..++ .++|..+....-.....+.+...++....+..+
T Consensus 78 ~~~vytG~~PSg~~lHLGh~v~~~~~~~lQ~~~~~~~~I~iaD~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (395)
T 3i05_A 78 PFYLYTGRGPSSESMHMGHLIPFMFTKWLQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAMTTENIKDI 145 (395)
T ss_dssp CEEEEEEECCCSSCCBGGGSHHHHHHHHHHHHHTCCEEEEECHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 83899584789864209999999999999863786059981545331377999999999999999999
No 82
>2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A {Rhodobacter capsulatus}
Probab=25.24 E-value=21 Score=15.26 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=18.6
Q ss_pred CCEEEEECCCCCCCCHHHH-HHHHHHHHHC
Q ss_conf 9659996589987848999-9999999748
Q gi|254780181|r 1 MMRKAVYTGSFDPITNGHM-DIIIQALSFV 29 (182)
Q Consensus 1 MmkigifgGsFdPiH~GHL-~ia~~a~~~~ 29 (182)
|.||+||-||= .|+- .+|+...+.+
T Consensus 1 M~KI~I~YgS~----tGnte~vA~~i~~~l 26 (182)
T 2wc1_A 1 MAKIGLFFGSD----TGTTRKIAKQIKDMF 26 (182)
T ss_dssp CCSEEEEECCS----SSHHHHHHHHHHTTS
T ss_pred CCEEEEEEECC----CHHHHHHHHHHHHHH
T ss_conf 98089999998----547999999999996
No 83
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: TRP; 2.50A {Thermotoga maritima}
Probab=24.21 E-value=33 Score=14.12 Aligned_cols=35 Identities=11% Similarity=0.105 Sum_probs=19.6
Q ss_pred CCEE--EEECCCCCCCCHHHHH-HHHHHHH---HCCEEEEECC
Q ss_conf 9659--9965899878489999-9999997---4897999645
Q gi|254780181|r 1 MMRK--AVYTGSFDPITNGHMD-IIIQALS---FVEDLVIAIG 37 (182)
Q Consensus 1 Mmki--gifgGsFdPiH~GHL~-ia~~a~~---~~D~vii~~~ 37 (182)
|||| |+=+-- ++|.||+. .+..... ...++++..+
T Consensus 12 ~~ri~tG~~PTG--~lHlG~~i~~i~~~~~lq~~g~~~~~~ia 52 (340)
T 2g36_A 12 HMRILSGMRPTG--KLHIGHLVGALENWVKLQEEGNECFYFVA 52 (340)
T ss_dssp CCEEEEEECCCS--SCBHHHHHTHHHHHHHHHHTTCEEEEEEC
T ss_pred CCEEEECCCCCC--CCHHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 453665618897--14588789999999999976994999972
No 84
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=24.15 E-value=33 Score=14.11 Aligned_cols=28 Identities=18% Similarity=0.057 Sum_probs=17.1
Q ss_pred CCCCHHHHH-------HHHHHHHHCCEEEEECCCC
Q ss_conf 878489999-------9999997489799964558
Q gi|254780181|r 12 DPITNGHMD-------IIIQALSFVEDLVIAIGCN 39 (182)
Q Consensus 12 dPiH~GHL~-------ia~~a~~~~D~vii~~~~~ 39 (182)
-++|.||+. +|.+...+...|++++|-.
T Consensus 47 G~lHiGH~~~~t~~Dv~aRy~rm~G~~vl~~~G~D 81 (862)
T 1gax_A 47 GSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTD 81 (862)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEB
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 86123178889999999999980799889998236
No 85
>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10
Probab=23.89 E-value=34 Score=14.08 Aligned_cols=40 Identities=10% Similarity=0.162 Sum_probs=26.1
Q ss_pred CEEEEE--CCCCCCC-CHHHHH-HHHH---HHHH--CCEEEEECCCCCC
Q ss_conf 659996--5899878-489999-9999---9974--8979996455888
Q gi|254780181|r 2 MRKAVY--TGSFDPI-TNGHMD-IIIQ---ALSF--VEDLVIAIGCNSV 41 (182)
Q Consensus 2 mkigif--gGsFdPi-H~GHL~-ia~~---a~~~--~D~vii~~~~~p~ 41 (182)
+|+.|| +|.|-|. +.-||- .++. .++. .|+|+.+..+.|+
T Consensus 44 KkVvl~~vPGAFTptCs~~hlP~y~~~~~~f~k~~gvd~I~cisvNDpf 92 (182)
T 1xiy_A 44 KKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNFDDIYCITNNDIY 92 (182)
T ss_dssp CEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCCSEEEEEESSCHH
T ss_pred CEEEEEECCCCCCCCCCHHHCCCHHHHHHHHHHHCCCCEEEEEECCCHH
T ss_conf 8499997377769867830375688888999985698526899659999
No 86
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasis, aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=23.44 E-value=34 Score=14.03 Aligned_cols=56 Identities=23% Similarity=0.249 Sum_probs=27.8
Q ss_pred EEEEECCCCCC----CCHHHHHHHHHHH---HHCC-EEEEECCCCCC-CCCCCCCHHHHHHHHHHH
Q ss_conf 59996589987----8489999999999---7489-79996455888-766578989999999997
Q gi|254780181|r 3 RKAVYTGSFDP----ITNGHMDIIIQAL---SFVE-DLVIAIGCNSV-KTKGFLSIQERSELIKQS 59 (182)
Q Consensus 3 kigifgGsFdP----iH~GHL~ia~~a~---~~~D-~vii~~~~~p~-k~~~~~s~e~r~~m~~~a 59 (182)
+.+||-| |+| +|+||+..+.... +.++ .++|..+.... -.....+.+.........
T Consensus 91 pf~v~tG-~~PsSG~~HLGh~~~~~~~~~lQd~~~~~~~i~iaD~ea~~~~~~~~~e~~~~~~~e~ 155 (451)
T 3foc_A 91 PIYIYTG-RGPSSGALHLGHLLPFIFTKYLQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTREN 155 (451)
T ss_dssp CEEEEEE-ECCCSSCCBHHHHHHHHHHHHHHHHHTCEEEEEECHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred CEEEEEC-CCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 8499979-8899897539999999999999875799789997247884048899999999999999
No 87
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=23.39 E-value=34 Score=14.02 Aligned_cols=30 Identities=13% Similarity=0.320 Sum_probs=17.1
Q ss_pred CC-EEEEECCCCCCCCHHHH--HHHHHHHHHCCEEEEEC
Q ss_conf 96-59996589987848999--99999997489799964
Q gi|254780181|r 1 MM-RKAVYTGSFDPITNGHM--DIIIQALSFVEDLVIAI 36 (182)
Q Consensus 1 Mm-kigifgGsFdPiH~GHL--~ia~~a~~~~D~vii~~ 36 (182)
|+ ||.|+||| |.+ .+++++++.-.+|.++.
T Consensus 10 mk~KIlVtGat------G~iG~~l~~~Ll~~g~~V~~l~ 42 (318)
T 2r6j_A 10 MKSKILIFGGT------GYIGNHMVKGSLKLGHPTYVFT 42 (318)
T ss_dssp CCCCEEEETTT------STTHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEECCC------CHHHHHHHHHHHHCCCEEEEEE
T ss_conf 99839998999------6899999999997869799997
No 88
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=22.41 E-value=36 Score=13.91 Aligned_cols=29 Identities=14% Similarity=0.096 Sum_probs=16.4
Q ss_pred CCCCHHHHH------H-HHHHHHHCCEEEEECCCCC
Q ss_conf 878489999------9-9999974897999645588
Q gi|254780181|r 12 DPITNGHMD------I-IIQALSFVEDLVIAIGCNS 40 (182)
Q Consensus 12 dPiH~GHL~------i-a~~a~~~~D~vii~~~~~p 40 (182)
.++|.||+. + +.+.....-.|.++++..-
T Consensus 39 G~lHlGHa~~~~~~Di~~Ry~r~~G~~V~~v~G~D~ 74 (564)
T 3kfl_A 39 ASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDE 74 (564)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 852356668899999999999936997034083687
No 89
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=22.31 E-value=30 Score=14.35 Aligned_cols=29 Identities=14% Similarity=0.252 Sum_probs=18.7
Q ss_pred CEEEEECCCCCCCCHHHH--HHHHHHHHHCCEEEEEC
Q ss_conf 659996589987848999--99999997489799964
Q gi|254780181|r 2 MRKAVYTGSFDPITNGHM--DIIIQALSFVEDLVIAI 36 (182)
Q Consensus 2 mkigifgGsFdPiH~GHL--~ia~~a~~~~D~vii~~ 36 (182)
|||.|+||| |-+ .+++++++.--+|....
T Consensus 1 MkIlV~Gat------G~iG~~l~~~L~~~G~~V~~~~ 31 (221)
T 3ew7_A 1 MKIGIIGAT------GRAGSRILEEAKNRGHEVTAIV 31 (221)
T ss_dssp CEEEEETTT------SHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEECCC------CHHHHHHHHHHHHCCCEEEEEE
T ss_conf 949999988------1899999999997869899998
No 90
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=20.90 E-value=39 Score=13.72 Aligned_cols=52 Identities=21% Similarity=0.245 Sum_probs=25.6
Q ss_pred CCCCCCHHHHHHHHHH---HHHCC-EEEEECCCCC-CCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9987848999999999---97489-7999645588-876657898999999999764
Q gi|254780181|r 10 SFDPITNGHMDIIIQA---LSFVE-DLVIAIGCNS-VKTKGFLSIQERSELIKQSIF 61 (182)
Q Consensus 10 sFdPiH~GHL~ia~~a---~~~~D-~vii~~~~~p-~k~~~~~s~e~r~~m~~~a~~ 61 (182)
|=+|+|+||+..+... .+.++ .++|..+.-. .-.....+.+.........+.
T Consensus 112 Sg~~lHLGh~l~~~~~k~~Q~~~~~~v~i~iaD~~a~~~~~~~s~e~i~~~~~e~~~ 168 (432)
T 2ip1_A 112 SSDSMHLGHMIPFVFTKWLQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAK 168 (432)
T ss_dssp CSSCCBGGGHHHHHHHHHHHHHHTCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 996214999999999999997679850589723476364778999999999999999
Done!