RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780181|ref|YP_003064594.1| phosphopantetheine
adenylyltransferase [Candidatus Liberibacter asiaticus str. psy62]
(182 letters)
>gnl|CDD|173914 cd02163, PPAT, Phosphopantetheine adenylyltransferase.
Phosphopantetheine adenylyltransferase (PPAT). PPAT is
an essential enzyme in bacteria, responsible for
catalyzing the rate-limiting step in coenzyme A (CoA)
biosynthesis. The dinucleotide-binding fold of PPAT is
homologous to class I aminoacyl-tRNA synthetases. CoA
has been shown to inhibit PPAT and competes with ATP,
PhP, and dPCoA. PPAT is a homohexamer in E. coli.
Length = 153
Score = 175 bits (447), Expect = 5e-45
Identities = 66/159 (41%), Positives = 97/159 (61%), Gaps = 6/159 (3%)
Query: 4 KAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKGFLSIQERSELIKQSIFHF 63
AVY GSFDPITNGH+DII +A +++++A+ N K K S++ER ELI+++ H
Sbjct: 1 IAVYPGSFDPITNGHLDIIERASKLFDEVIVAVAVNPSK-KPLFSLEERVELIREATKHL 59
Query: 64 IPDSSNRVSVISFEGLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIA 123
V V F+GL V+ A+ A VIVRGLR ++DF+YE +M +NR L PEI T+
Sbjct: 60 P-----NVEVDGFDGLLVDFARKHGANVIVRGLRAVSDFEYEFQMAGMNRKLAPEIETVF 114
Query: 124 LFAKESSRYVTSTLIRHLISIDADITSFVPDPVCVFLKN 162
L A +++S+L++ + D++ FVP V LK
Sbjct: 115 LMASPEYSFISSSLVKEIARFGGDVSGFVPPVVAKALKE 153
>gnl|CDD|31013 COG0669, CoaD, Phosphopantetheine adenylyltransferase [Coenzyme
metabolism].
Length = 159
Score = 169 bits (431), Expect = 3e-43
Identities = 66/162 (40%), Positives = 104/162 (64%), Gaps = 6/162 (3%)
Query: 1 MMRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKGFLSIQERSELIKQSI 60
MM+ AVY GSFDPITNGH+DII +A + +++++A+ N K K S++ER ELI+++
Sbjct: 1 MMKIAVYPGSFDPITNGHLDIIKRASALFDEVIVAVAINPSK-KPLFSLEERVELIREAT 59
Query: 61 FHFIPDSSNRVSVISFEGLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIA 120
H V V+ F GL V+ AK + A V+VRGLR ++DF+YE++M +NR L PE+
Sbjct: 60 KHL-----PNVEVVGFSGLLVDYAKKLGATVLVRGLRAVSDFEYELQMAHMNRKLAPEVE 114
Query: 121 TIALFAKESSRYVTSTLIRHLISIDADITSFVPDPVCVFLKN 162
T+ L +++S+L+R + + D++ FVP+ V L+
Sbjct: 115 TVFLMPSPEYSFISSSLVREIAAFGGDVSEFVPEAVARALRA 156
>gnl|CDD|144891 pfam01467, CTP_transf_2, Cytidylyltransferase. This family
includes: Cholinephosphate cytidylyltransferase.
Glycerol-3-phosphate cytidylyltransferase.
Length = 148
Score = 64.4 bits (157), Expect = 2e-11
Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 6 VYTGSFDPITNGHMDIIIQALS-FVEDLVIAI-GCNSVK--TKGFLSIQERSELIKQSIF 61
++ G+FDPI GH+ ++ QA F D ++ + S TK S +ER E+++ ++
Sbjct: 1 LFGGTFDPIHLGHLRLLEQAKELFDLDKIVGVPSDESPHKDTKNLFSAEERLEMLELAL- 59
Query: 62 HFIPDSSNRVSVISFEGLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNR 113
+ + V FE L V A V +RG R +T+ E ++ VNR
Sbjct: 60 ----EVDPNLEVDDFEDLDVYFIIGADALVNLRGWRGVTELLPEFQIVVVNR 107
>gnl|CDD|185678 cd02039, cytidylyltransferase_like, Cytidylyltransferase-like
domain. Cytidylyltransferase-like domain. Many of these
proteins are known to use CTP or ATP and release
pyrophosphate. Protein families that contain at least
one copy of this domain include citrate lyase ligase,
pantoate-beta-alanine ligase, glycerol-3-phosphate
cytidyltransferase, ADP-heptose synthase, phosphocholine
cytidylyltransferase, lipopolysaccharide core
biosynthesis protein KdtB, the bifunctional protein
NadR, and a number whose function is unknown.
Length = 143
Score = 44.7 bits (106), Expect = 1e-05
Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 7/109 (6%)
Query: 4 KAVYTGSFDPITNGHMDIIIQALS-FVEDLVIAIGCNSVK---TKGFLSIQERSELIK-- 57
+ G F+P GH+ +I +AL +++++I I N K K S+ ER E++K
Sbjct: 1 VGIIIGRFEPFHLGHLKLIKEALEEALDEVIIIIVSNPPKKKRNKDPFSLHERVEMLKEI 60
Query: 58 -QSIFHFIPDSSNRVSVISFEGLAVNLAKDISAQVIVRGLRDMTDFDYE 105
+ +P V ++ + + + +V G +
Sbjct: 61 LKDRLKVVPVDFPEVKILLAVVFILKILLKVGPDKVVVGEDFAFGKNAS 109
>gnl|CDD|31257 COG1057, NadD, Nicotinic acid mononucleotide adenylyltransferase
[Coenzyme metabolism].
Length = 197
Score = 44.9 bits (106), Expect = 1e-05
Identities = 38/184 (20%), Positives = 66/184 (35%), Gaps = 28/184 (15%)
Query: 1 MMRKAVYTGSFDPITNGHMDIIIQALSFVE-DLVIAIGCNS---VKTKGFLSIQERSELI 56
M + A++ GSFDP GH+ I +AL + D VI + K K S + R ++
Sbjct: 2 MKKIALFGGSFDPPHYGHLLIAEEALDQLGLDKVIFLPSPVPPHKKKKELASAEHRLAML 61
Query: 57 KQSI---------FHFIPDSSNRVSVISFEGLAVNLAKDISAQVIVRG--LRDMTDF-DY 104
+ +I I ++ + E L D+ I+ L + + D+
Sbjct: 62 ELAIEDNPRFEVSDREIKRGGPSYTIDTLEHLRQEYGPDVELYFIIGADNLASLPKWYDW 121
Query: 105 EMRMTSVNRCLCPEI------------ATIALFAKESSRYVTSTLIRHLISIDADITSFV 152
+ + V + P + ++ST IR I A + +
Sbjct: 122 DELLKLVTFVVAPRPGYGELELSLLSSGGAIILLDLPRLDISSTEIRERIRRGASVDYLL 181
Query: 153 PDPV 156
PD V
Sbjct: 182 PDSV 185
>gnl|CDD|185680 cd02165, NMNAT, Nicotinamide/nicotinate mononucleotide
adenylyltransferase. Nicotinamide/nicotinate
mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT).
NMNAT represents the primary bacterial and eukaryotic
adenylyltransferases for nicotinamide-nucleotide and for
the deamido form, nicotinate nucleotide. It is an
indispensable enzyme in the biosynthesis of NAD(+) and
NADP(+). Nicotinamide-nucleotide adenylyltransferase
synthesizes NAD via the salvage pathway, while
nicotinate-nucleotide adenylyltransferase synthesizes
the immediate precursor of NAD via the de novo pathway.
Human NMNAT displays unique dual substrate specificity
toward both NMN and NaMN, and can participate in both de
novo and salvage pathways of NAD synthesis.
Length = 192
Score = 39.9 bits (94), Expect = 4e-04
Identities = 36/188 (19%), Positives = 65/188 (34%), Gaps = 43/188 (22%)
Query: 5 AVYTGSFDPITNGHMDIIIQALSFVE-DLVIAIGC--NSVKTKGFLSIQERSELIKQSIF 61
A++ GSFDP GH+ I +AL + D V+ + K S + R E++K +I
Sbjct: 2 ALFGGSFDPPHLGHLAIAEEALEELGLDRVLLLPSANPPHKPPKPASFEHRLEMLKLAI- 60
Query: 62 HFIPDSSNRVSVISFEGL------AVNLAKDISAQ--------VI-------------VR 94
+ + + V E ++ +++ + +I
Sbjct: 61 ----EDNPKFEVSDIEIKRDGPSYTIDTLEELRERYPNAELYFIIGSDNLIRLPKWYDWE 116
Query: 95 GLRDMTDF------DYEMRMTSVNRCLCPEIATIALFAKESSRYVTSTLIRHLISIDADI 148
L + Y + S+ + L P I L ++ST IR + I
Sbjct: 117 ELLSLVHLVVAPRPGYPIEDASLEKLLLPGGRIILLDNPL--LNISSTEIRERLKNGKSI 174
Query: 149 TSFVPDPV 156
+P V
Sbjct: 175 RYLLPPAV 182
>gnl|CDD|173919 cd02168, NMNAT_Nudix, Nicotinamide/nicotinate mononucleotide
adenylyltransferase of bifunctional proteins, also
containing a Nudix hydrolase domain. N-terminal NMNAT
(Nicotinamide/nicotinate mononucleotide
adenylyltransferase) domain of a novel bifunctional
enzyme endowed with NMN adenylyltransferase and Nudix
hydrolase activities. This domain is highly homologous
to the archeal NMN adenyltransferase that catalyzes NAD
synthesis from NMN and ATP. NMNAT is an essential
enzyme in the biosynthesis of NAD(+) and NADP(+).
Nicotinamide-nucleotide adenylyltransferase synthesizes
NAD via the salvage pathway, while
nicotinate-nucleotide adenylyltransferase synthesizes
the immediate precursor of NAD via the de novo pathway.
The C-terminal domain of this enzyme shares homology
with the archaeal ADP-ribose pyrophosphatase, a member
of the 'Nudix' hydrolase family.
Length = 181
Score = 37.4 bits (87), Expect = 0.002
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 5 AVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGC--NSVKTKGFLSIQERSELI 56
VY G F P NGH+ +++ AL + ++I IG + K + +ER +I
Sbjct: 2 LVYIGRFQPFHNGHLAVVLIALEKAKKVIILIGSARTARNIKNPWTSEEREVMI 55
>gnl|CDD|31845 COG1659, COG1659, Uncharacterized protein, linocin/CFP29 homolog
[Function unknown].
Length = 267
Score = 36.9 bits (85), Expect = 0.003
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 2/100 (2%)
Query: 23 IQALSFVEDLVIAIGCNSVKTKGFLSIQERSELIKQSIFHFIPDSSNR-VSVISFEGLAV 81
+ L+FVED I G ++ +G LS L IPD + +S + G+
Sbjct: 109 AKKLAFVEDRTIFEGYSAAGIEGILSASSNPALTLPEDPREIPDVIVQALSELRLAGVDG 168
Query: 82 NLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIAT 121
+ ++A + + + +D Y +R +NR + +I
Sbjct: 169 PYSLLLNADRYTKLVSETSDHGYPIR-EHLNRLVDGDIIW 207
>gnl|CDD|173912 cd02156, nt_trans, nucleotidyl transferase superfamily. nt_trans
(nucleotidyl transferase) This superfamily includes the
class I amino-acyl tRNA synthetases, pantothenate
synthetase (PanC), ATP sulfurylase, and the
cytidylyltransferases, all of which have a conserved
dinucleotide-binding domain.
Length = 105
Score = 36.7 bits (85), Expect = 0.004
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 4 KAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKT--KGFLSIQERSELIKQSIF 61
KA + G + GH +I +A + V+ I N + ++ER E I++ I
Sbjct: 1 KARFPGEPGYLHIGHAKLICRAKGIADQCVVRIDDNPPVKVWQDPHELEERKESIEEDIS 60
>gnl|CDD|31256 COG1056, NadR, Nicotinamide mononucleotide adenylyltransferase
[Coenzyme metabolism].
Length = 172
Score = 36.4 bits (84), Expect = 0.005
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 1 MMRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIG 37
M++ VY G F P+ GH+ +I +ALS V++L+I IG
Sbjct: 2 RMKRGVYFGRFQPLHTGHLYVIKRALSKVDELIIVIG 38
>gnl|CDD|173917 cd02166, NMNAT_Archaea, Nicotinamide/nicotinate mononucleotide
adenylyltransferase, archaeal. This family of archaeal
proteins exhibits nicotinamide-nucleotide
adenylyltransferase (NMNAT) activity utilizing the
salvage pathway to synthesize NAD. In some cases, the
enzyme was tested and found also to have the activity of
nicotinate-nucleotide adenylyltransferase an enzyme of
NAD de novo biosynthesis, although with a higher Km. In
some archaeal species, a number of proteins which are
uncharacterized with respect to activity, are also
present.
Length = 163
Score = 36.1 bits (84), Expect = 0.005
Identities = 43/176 (24%), Positives = 71/176 (40%), Gaps = 36/176 (20%)
Query: 4 KAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIG----CNSVK---TKGFLSIQERSELI 56
+A++ G F P GH+ +I L V++L+I IG ++++ T G ER +I
Sbjct: 1 RALFIGRFQPFHLGHLKVIKWILEEVDELIIGIGSAQESHTLENPFTAG-----ERVLMI 55
Query: 57 KQSIFHFIPDSSNRVSVISFEGLAVNLAKDISAQVIVRGLRDMT-DFDYEMRMTSVNRCL 115
++++ D S R +I + N + V + +T FD + S N
Sbjct: 56 RRALEEEGIDLS-RYYIIPVPDIERNS-------LWVSYVESLTPPFD---VVYSGN--- 101
Query: 116 CPEIATIALFAKESSRYV--------TSTLIRHLISIDADITSFVPDPVCVFLKNI 163
P +A + A R + T IR L+ D VP V +K I
Sbjct: 102 -PLVARLFKEAGYEVRRPPMFNREEYSGTEIRRLMLGGEDWEELVPKSVAEVIKEI 156
>gnl|CDD|35535 KOG0314, KOG0314, KOG0314, Predicted E3 ubiquitin ligase
[Posttranslational modification, protein turnover,
chaperones].
Length = 448
Score = 30.8 bits (69), Expect = 0.25
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 59 SIFHFIPDSSNRVSVISFEGLAVNLAKDISAQVIVRG-LRDMTDFDYEMRMTSVNRCLCP 117
S H+ S V I F+GL + +A D+ ++IV L DFD ++
Sbjct: 3 STIHYKFRSQLNVDTIQFDGLHLIVA-DLKREIIVEDKLGKFGDFDLQIPNAQTKEHYND 61
Query: 118 E 118
+
Sbjct: 62 D 62
>gnl|CDD|31222 COG1019, COG1019, Predicted nucleotidyltransferase [General
function prediction only].
Length = 158
Score = 29.5 bits (66), Expect = 0.55
Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSV----KTKGFLSIQERSELIK 57
K G+FD + +GH ++ A + + I + + + K + + R ++
Sbjct: 5 FMKVAVGGTFDRLHDGHKKLLEVAFEIGDRVTIGLTSDELAKKKKKEKIEPYEVRLRNLR 64
Query: 58 Q 58
Sbjct: 65 N 65
>gnl|CDD|173918 cd02167, NMNAT_NadR, Nicotinamide/nicotinate mononucleotide
adenylyltransferase of bifunctional NadR-like proteins.
NMNAT domain of NadR protein. The NadR protein (NadR)
is a bifunctional enzyme possessing both NMN
adenylytransferase (NMNAT) and ribosylnicotinamide
kinase (RNK) activities. Its function is essential for
the growth and survival of H. influenzae and thus may
present a new highly specific anti-infectious drug
target. The N-terminal domain that hosts the NMNAT
activity is closely related to archaeal NMNAT. The
bound NAD at the active site of the NMNAT domain
reveals several critical interactions between NAD and
the protein.The NMNAT domain of hiNadR defines yet
another member of the pyridine nucleotide
adenylyltransferase.
Length = 158
Score = 29.0 bits (65), Expect = 0.71
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 6 VYTGSFDPITNGHMDIIIQALSFVEDLVIAIG 37
+ G F P+ GH+ +I +ALS V++L+I +G
Sbjct: 3 IVFGKFAPLHTGHVYLIYKALSQVDELLIIVG 34
>gnl|CDD|39748 KOG4548, KOG4548, KOG4548, Mitochondrial ribosomal protein L17
[Translation, ribosomal structure and biogenesis].
Length = 263
Score = 29.2 bits (65), Expect = 0.74
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 9/73 (12%)
Query: 46 FLSIQERSELIKQSIFHFIPDSSNRVSVISFEGLAVNLAKDISAQVIVR---GLRDMTDF 102
+ QE E Q+ D + F G+ N KD+ + ++ R +T+
Sbjct: 70 LKAFQEEKEKAWQAQLRKEVDEED-----EFIGITANDRKDMWKKDLLDFDLPFR-ITEA 123
Query: 103 DYEMRMTSVNRCL 115
D + S+ R L
Sbjct: 124 DPKNDRKSLEREL 136
>gnl|CDD|185681 cd09286, NMNAT_Eukarya, Nicotinamide/nicotinate mononucleotide
adenylyltransferase, Eukaryotic.
Nicotinamide/nicotinate mononucleotide (NMN/
NaMN)adenylyltransferase (NMNAT). NMNAT represents the
primary bacterial and eukaryotic adenylyltransferases
for nicotinamide-nucleotide and for the deamido form,
nicotinate nucleotide. It is an indispensable enzyme
in the biosynthesis of NAD(+) and NADP(+).
Nicotinamide-nucleotide adenylyltransferase synthesizes
NAD via the salvage pathway, while
nicotinate-nucleotide adenylyltransferase synthesizes
the immediate precursor of NAD via the de novo pathway.
Human NMNAT displays unique dual substrate specificity
toward both NMN and NaMN, and can participate in both
de novo and salvage pathways of NAD synthesis. This
subfamily consists strictly of eukaryotic members and
includes secondary structural elements not found in all
NMNATs.
Length = 225
Score = 28.0 bits (63), Expect = 1.5
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 6 VYTGSFDPITNGHM 19
+ GSF+PITN H+
Sbjct: 4 LACGSFNPITNMHL 17
>gnl|CDD|173921 cd02170, cytidylyltransferase, cytidylyltransferase. The
cytidylyltransferase family includes cholinephosphate
cytidylyltransferase (CCT), glycerol-3-phosphate
cytidylyltransferase, RafE and phosphoethanolamine
cytidylyltransferase (ECT). All enzymes catalyze the
transfer of a cytidylyl group from CTP to various
substrates.
Length = 136
Score = 28.0 bits (63), Expect = 1.5
Identities = 13/60 (21%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAI----GCNSVKTKGFLSIQERSELIK 57
M++ G+FD I GH+ + +A + L++ + +K + L ++R+E+++
Sbjct: 1 MKRVYAAGTFDIIHPGHIRFLEEAKKLGDYLIVGVARDETVAKIKRRPILPEEQRAEVVE 60
>gnl|CDD|30932 COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication,
recombination, and repair].
Length = 1139
Score = 26.0 bits (57), Expect = 6.4
Identities = 9/67 (13%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 49 IQERSELIKQSIFHFIPDSSNRV--SVISFEGLAVNLAKDISAQVIVRGLRDMTDFDYEM 106
I+ I +S + F + + + + +G+ + ++I + + + DF +
Sbjct: 799 IEVLPPDINRSGWDFTVEEKKAIRLGLGAIKGVGEDAIEEIVEARKEKPFKSLEDFCDRI 858
Query: 107 RMTSVNR 113
+N+
Sbjct: 859 DRKGLNK 865
>gnl|CDD|146864 pfam04433, SWIRM, SWIRM domain. This SWIRM domain is a small
alpha-helical domain of about 85 amino acid residues
found in chromosomal proteins. It contains a helix-turn
helix motif and binds to DNA.
Length = 84
Score = 26.0 bits (58), Expect = 6.8
Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 14/65 (21%)
Query: 101 DFDYEMRMTSVNRCLCPEI-------------ATIALFAKESSRYVTSTLIRHLISIDAD 147
FD + + + + L PE + + +Y+T T R L+ D +
Sbjct: 9 WFDLD-LLHEIEKRLLPEFFLGTPEVYLKIRNFILNEWRLNPGKYLTKTDARRLLKGDVN 67
Query: 148 ITSFV 152
S V
Sbjct: 68 KVSRV 72
>gnl|CDD|133011 cd02518, GT2_SpsF, SpsF is a glycosyltrnasferase implicated in the
synthesis of the spore coat. Spore coat polysaccharide
biosynthesis protein F (spsF) is a glycosyltransferase
implicated in the synthesis of the spore coat in a
variety of bacteria challenged by stress as starvation.
The spsF gene is expressed in the late stage of coat
development responsible for a terminal step in coat
formation that involves the glycosylation of the coat.
SpsF gene mutation resulted in spores that appeared
normal. But, the spores tended to aggregate and had
abnormal adsorption properties, indicating a surface
alteration.
Length = 233
Score = 25.6 bits (57), Expect = 8.0
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 9/55 (16%)
Query: 103 DYEMRMTSVNRCLCPEI--ATIALFAKESSRYVT----STLIRHLISIDADITSF 151
D +R+T + PEI A I LF K + Y + T L D ++ +
Sbjct: 89 DVVVRITGDCPLIDPEIIDAVIRLFLKSGADYTSNTLPRTYPDGL---DVEVFTR 140
>gnl|CDD|173922 cd02171, G3P_Cytidylyltransferase, glycerol-3-phosphate
cytidylyltransferase. Glycerol-3-phosphate
cytidylyltransferase,(CDP-glycerol pyrophosphorylase).
Glycerol-3-phosphate cytidyltransferase acts in
pathways of teichoic acid biosynthesis. Teichoic acids
are substituted polymers, linked by phosphodiester
bonds, of glycerol, ribitol, etc. An example is
poly(glycerol phosphate), the major teichoic acid of
the Bacillus subtilis cell wall. Most, but not all,
species encoding proteins in this family are
Gram-positive bacteria. A closely related protein
assigned a different function experimentally is a human
ethanolamine-phosphate cytidylyltransferase.
Length = 129
Score = 25.5 bits (56), Expect = 8.9
Identities = 14/60 (23%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGC---NSVK-TKGFLSIQERSELIK 57
M+ + G+FD + GH++++ +A + + L++A+ N+ K K + ++R+E+++
Sbjct: 1 MKVVITYGTFDLLHIGHLNLLERAKALGDKLIVAVSTDEFNAGKGKKAVIPYEQRAEILE 60
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.326 0.139 0.392
Gapped
Lambda K H
0.267 0.0657 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,063,989
Number of extensions: 99578
Number of successful extensions: 314
Number of sequences better than 10.0: 1
Number of HSP's gapped: 309
Number of HSP's successfully gapped: 32
Length of query: 182
Length of database: 6,263,737
Length adjustment: 88
Effective length of query: 94
Effective length of database: 4,362,145
Effective search space: 410041630
Effective search space used: 410041630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (24.7 bits)