RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780181|ref|YP_003064594.1| phosphopantetheine
adenylyltransferase [Candidatus Liberibacter asiaticus str. psy62]
(182 letters)
>gnl|CDD|178911 PRK00168, coaD, phosphopantetheine adenylyltransferase;
Provisional.
Length = 159
Score = 190 bits (485), Expect = 2e-49
Identities = 66/161 (40%), Positives = 103/161 (63%), Gaps = 6/161 (3%)
Query: 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKGFLSIQERSELIKQSIF 61
M+ A+Y GSFDPITNGH+DII +A +++++A+ N K K S++ER ELI+++
Sbjct: 1 MKIAIYPGSFDPITNGHLDIIERASRLFDEVIVAVAINPSK-KPLFSLEERVELIREATA 59
Query: 62 HFIPDSSNRVSVISFEGLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIAT 121
H V V+SF+GL V+ A+++ A VIVRGLR ++DF+YE +M +NR L PEI T
Sbjct: 60 HL-----PNVEVVSFDGLLVDFAREVGATVIVRGLRAVSDFEYEFQMAGMNRKLAPEIET 114
Query: 122 IALFAKESSRYVTSTLIRHLISIDADITSFVPDPVCVFLKN 162
+ L +++S+L++ + + D++ FVP V LK
Sbjct: 115 VFLMPSPEYSFISSSLVKEVARLGGDVSGFVPPAVAKALKE 155
>gnl|CDD|162396 TIGR01510, coaD_prev_kdtB, pantetheine-phosphate
adenylyltransferase, bacterial. This model describes
pantetheine-phosphate adenylyltransferase, the
penultimate enzyme of coenzyme A (CoA) biosynthesis in
bacteria. It does not show any strong homology to
eukaryotic enzymes of coenzyme A biosynthesis. This
protein was previously designated KdtB and postulated
(because of cytidyltransferase homology and proximity to
kdtA) to be an enzyme of LPS biosynthesis, a
cytidyltransferase for 3-deoxy-D-manno-2-octulosonic
acid. However, no activity toward that compound was
found with either CTP or ATP. The phylogenetic
distribution of this enzyme is more consistent with
coenzyme A biosynthesis than with LPS biosynthesis.
Length = 155
Score = 152 bits (385), Expect = 7e-38
Identities = 66/158 (41%), Positives = 99/158 (62%), Gaps = 6/158 (3%)
Query: 4 KAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKGFLSIQERSELIKQSIFHF 63
A+Y GSFDP+TNGH+DII +A + +++++A+ N K K S++ER ELIK + H
Sbjct: 1 IALYPGSFDPVTNGHLDIIKRAAALFDEVIVAVAKNPSK-KPLFSLEERVELIKDATKHL 59
Query: 64 IPDSSNRVSVISFEGLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIA 123
V V F+GL V+ AK++ A IVRGLR TDF+YE++M +N+ L PEI T+
Sbjct: 60 -----PNVRVDVFDGLLVDYAKELGATFIVRGLRAATDFEYELQMALMNKHLAPEIETVF 114
Query: 124 LFAKESSRYVTSTLIRHLISIDADITSFVPDPVCVFLK 161
L A +V+S+L++ + S D+++ VP V LK
Sbjct: 115 LMASPEYAFVSSSLVKEIASFGGDVSNLVPPAVARRLK 152
>gnl|CDD|184424 PRK13964, coaD, phosphopantetheine adenylyltransferase;
Provisional.
Length = 140
Score = 87.1 bits (216), Expect = 3e-18
Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 7/140 (5%)
Query: 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKGFLSIQERSELIKQSIF 61
M+ A+Y GSFDP GH++I+ +AL + + + + N K+ + R + +K +
Sbjct: 1 MKIAIYPGSFDPFHKGHLNILKKALKLFDKVYVVVSINPDKSNA-SDLDSRFKNVKNKLK 59
Query: 62 HFIPDSSNRVSVISFE-GLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIA 120
F V V+ E L +AK + A ++R R+ DF YE+ + + N+ L ++
Sbjct: 60 DF-----KNVEVLINENKLTAEIAKKLGANFLIRSARNNIDFQYEIVLAAGNKSLNNDLE 114
Query: 121 TIALFAKESSRYVTSTLIRH 140
TI + +STL+RH
Sbjct: 115 TILIIPDYDKIEYSSTLLRH 134
>gnl|CDD|161722 TIGR00125, cyt_tran_rel, cytidyltransferase-related domain.
Protein families that contain at least one copy of this
domain include citrate lyase ligase,
pantoate-beta-alanine ligase, glycerol-3-phosphate
cytidyltransferase, ADP-heptose synthase,
phosphocholine cytidylyltransferase, lipopolysaccharide
core biosynthesis protein KdtB, the bifunctional
protein NadR, and a number whose function is unknown.
Many of these proteins are known to use CTP or ATP and
release pyrophosphate.
Length = 66
Score = 50.8 bits (122), Expect = 2e-07
Identities = 17/63 (26%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 4 KAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIG----CNSVKTKGFLSIQERSELIKQS 59
+ ++ G+FDP GH+D++ +A ++L++ +G N +K + S++ER E++K
Sbjct: 1 RVIFVGTFDPFHLGHLDLLERAKELFDELIVGVGSDQFVNPLKGEPVFSLEERLEMLKAL 60
Query: 60 IFH 62
+
Sbjct: 61 KYV 63
>gnl|CDD|178839 PRK00071, nadD, nicotinic acid mononucleotide
adenylyltransferase; Provisional.
Length = 203
Score = 39.8 bits (94), Expect = 4e-04
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 1 MMRKAVYTGSFDPITNGHMDIIIQALSFVE-DLVIAI--GCNSVKT-KGFLSIQERSELI 56
M R ++ G+FDP GH+ I +A + D V + K K ++ R ++
Sbjct: 3 MKRIGLFGGTFDPPHYGHLAIAEEAAERLGLDEVWFLPNPGPPHKPQKPLAPLEHRLAML 62
Query: 57 KQSI 60
+ +I
Sbjct: 63 ELAI 66
Score = 26.0 bits (58), Expect = 6.2
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 135 STLIRHLISIDADITSFVPDPV 156
ST IR I I +P+ V
Sbjct: 170 STAIRERIKEGRPIRYLLPEAV 191
>gnl|CDD|162401 TIGR01527, arch_NMN_Atrans, nicotinamide-nucleotide
adenylyltransferase. In some archaeal species, a
lower-scoring paralog, uncharacterized with respect to
activity, is also present. These score between trusted
and noise cutoffs.
Length = 165
Score = 37.9 bits (88), Expect = 0.001
Identities = 39/164 (23%), Positives = 60/164 (36%), Gaps = 14/164 (8%)
Query: 4 KAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGC--NSVKTKGFLSIQERSELIKQSIF 61
+ Y G F P GH+++I + V++L+I IG S + + ER +I QS+
Sbjct: 1 RGFYIGRFQPFHLGHLEVIKKIAEEVDELIIGIGSAQESHTLENPFTAGERILMITQSLK 60
Query: 62 HFIPDSSNRVSVISFEGLAVNLAKDISAQVIVRGLRDMT-DFDYEMRMTSVNRCLCPEIA 120
+I E + N + V + MT FD + R L E
Sbjct: 61 EV---GDLTYYIIPIEDIERN-------SIWVSYVESMTPPFDVVYSNNPLVRRLFKEAG 110
Query: 121 TIALFAKESSRYV-TSTLIRHLISIDADITSFVPDPVCVFLKNI 163
+R + T IR + D VP V +K I
Sbjct: 111 YEVKRPPMFNRKEYSGTEIRRRMLNGEDWEHLVPKAVADVIKEI 154
>gnl|CDD|179235 PRK01153, PRK01153, nicotinamide-nucleotide adenylyltransferase;
Provisional.
Length = 174
Score = 37.2 bits (87), Expect = 0.002
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIG 37
MR A++ G F P GH+++I L V++L+I IG
Sbjct: 1 MR-ALFIGRFQPFHKGHLEVIKWILEEVDELIIGIG 35
>gnl|CDD|180046 PRK05379, PRK05379, bifunctional nicotinamide mononucleotide
adenylyltransferase/ADP-ribose pyrophosphatase;
Provisional.
Length = 340
Score = 36.9 bits (86), Expect = 0.003
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 25/96 (26%)
Query: 5 AVYTGSFDPITNGHMDIIIQALSFVEDLVIAIG-CNSVK-TKGFLSIQERSELIKQSIFH 62
V+ G F P NGH+ +I +ALS + +++ IG + + K S +ER+++I+ +
Sbjct: 9 LVFIGRFQPFHNGHLAVIREALSRAKKVIVLIGSADLARSIKNPFSFEERAQMIRAA--- 65
Query: 63 FIPDSSNRVSVISFEGLAVNLAKDISAQVIVRGLRD 98
LA A+V +R LRD
Sbjct: 66 --------------------LAGIDLARVTIRPLRD 81
>gnl|CDD|161899 TIGR00482, TIGR00482, nicotinate (nicotinamide) nucleotide
adenylyltransferase. This model represents the
predominant bacterial/eukaryotic adenylyltransferase
for nicotinamide-nucleotide, its deamido form
nicotinate nucleotide, or both. The first activity,
nicotinamide-nucleotide adenylyltransferase (EC
2.7.7.1), synthesizes NAD by the salvage pathway, while
the second, nicotinate-nucleotide adenylyltransferase
(EC 2.7.7.18) synthesizes the immediate precursor of
NAD by the de novo pathway. In E. coli, NadD activity
is biased toward the de novo pathway while salvage
activity is channeled through the multifunctional NadR
protein, but this division of labor may be exceptional.
The given name of this model, nicotinate (nicotinamide)
nucleotide adenylyltransferase, reflects the lack of
absolute specificity with respect to substrate
amidation state in most species.
Length = 193
Score = 35.0 bits (81), Expect = 0.012
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 6 VYTGSFDPITNGHMDIIIQALS-FVEDLVIAI-GCNSV--KTKGFLSIQERSELIKQSI 60
++ GSFDPI GH+ + +AL D VI + N KT S R ++K +I
Sbjct: 1 LFGGSFDPIHYGHLLLAEEALDHLDLDKVIFVPTANPPHKKTYEAASSHHRLAMLKLAI 59
Score = 27.7 bits (62), Expect = 1.9
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 133 VTSTLIRHLISIDADITSFVPDPVC 157
++ST IR I I +PDPV
Sbjct: 160 ISSTEIRQRIRQGKSIEYLLPDPVI 184
>gnl|CDD|180860 PRK07152, nadD, putative nicotinate-nucleotide
adenylyltransferase; Validated.
Length = 342
Score = 33.4 bits (77), Expect = 0.039
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 2 MRKAVYTGSFDPITNGHMDIIIQALSFVE-DLVIAIGC--NSVKTKGFLSIQE-RSELIK 57
M+ A++ GSFDPI GH++I +A+ ++ D + + N K K S E R ++K
Sbjct: 1 MKIAIFGGSFDPIHKGHINIAKKAIKKLKLDKLFFVPTYINPFKKKQKASNGEHRLNMLK 60
Query: 58 QSI 60
++
Sbjct: 61 LAL 63
>gnl|CDD|181229 PRK08099, PRK08099, bifunctional DNA-binding transcriptional
repressor/ NMN adenylyltransferase; Provisional.
Length = 399
Score = 31.2 bits (71), Expect = 0.16
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 1 MMRK-AVYTGSFDPITNGHMDIIIQALSFVEDLVIAIG 37
M+K V G F P+ GH+ +I +A S V++L I I
Sbjct: 50 QMKKIGVVFGKFYPLHTGHIYLIQRACSQVDELHIIIC 87
>gnl|CDD|179121 PRK00777, PRK00777, phosphopantetheine adenylyltransferase;
Provisional.
Length = 153
Score = 29.0 bits (66), Expect = 0.74
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAI 36
M K G+FDP+ +GH ++ +A + + I +
Sbjct: 1 MMKVAVGGTFDPLHDGHRALLRKAFELGKRVTIGL 35
>gnl|CDD|162400 TIGR01526, nadR_NMN_Atrans, nicotinamide-nucleotide
adenylyltransferase, NadR type. E. coli NadR has also
been found to regulate the import of its substrate,
nicotinamide ribonucleotide, but it is not known if the
other members of this model share that activity.
Length = 325
Score = 28.7 bits (64), Expect = 0.86
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIG 37
V G F P+ GH+ +I +A S V++L I +G
Sbjct: 1 KTIGVVFGKFYPLHTGHIYLIYEAFSKVDELHIVVG 36
>gnl|CDD|183910 PRK13238, tnaA, tryptophanase/L-cysteine desulfhydrase,
PLP-dependent; Provisional.
Length = 460
Score = 27.5 bits (62), Expect = 2.2
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 11/41 (26%)
Query: 70 RVSVISFEG------LAVNLAKDISAQVIVRGLRDMTDFDY 104
R I +EG LA +D+ A + GL + D DY
Sbjct: 282 RTLCILYEGFPTYGGLAG---RDMEA--LAVGLYEGMDEDY 317
>gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed.
Length = 644
Score = 26.2 bits (57), Expect = 5.2
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 11/72 (15%)
Query: 64 IPDSSNRVSVISFEGLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIA 123
+PD R ++ V LA DI A +I RG + D L + A
Sbjct: 321 LPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGAD-----------LANLVNEAA 369
Query: 124 LFAKESSRYVTS 135
LFA ++ V S
Sbjct: 370 LFAARGNKRVVS 381
>gnl|CDD|129003 smart00764, Citrate_ly_lig, Citrate lyase ligase C-terminal
domain. Proteins of this family contain the C-terminal
domain of citrate lyase ligase EC:6.2.1.22.
Length = 182
Score = 26.1 bits (58), Expect = 6.1
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 13 PITNGHMDIIIQALSFVEDLVIAIGCNSVKT-KGFLSIQERSELIKQSIFHF 63
P T GH ++ QA + + + + + V S ER L+K+
Sbjct: 10 PFTLGHRYLVEQAAAECDWVHLFV----VSEDASLFSFDERFALVKKGTKDL 57
>gnl|CDD|129230 TIGR00124, cit_ly_ligase, [citrate (pro-3S)-lyase] ligase. ATP is
cleaved to AMP and pyrophosphate during the reaction.
The carboxyl end is homologous to a number of
cytidyltransferases that also release pyrophosphate.
Length = 332
Score = 25.6 bits (56), Expect = 7.5
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 12 DPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKGFL-SIQERSELIKQSIF 61
+P TNGH +I QA + L + + VK L S ER L+KQ I
Sbjct: 149 NPFTNGHRYLIEQAARQCDWLHLFV----VKEDASLFSYDERFALVKQGIQ 195
>gnl|CDD|181576 PRK08887, PRK08887, nicotinic acid mononucleotide
adenylyltransferase; Provisional.
Length = 174
Score = 25.5 bits (56), Expect = 9.2
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 20/80 (25%)
Query: 1 MMRKAVYTGSFDPITNGHMDIIIQALSFVEDLVI-------AIGCNSVKTKGFLSIQERS 53
M + AV+ +F+P + GH +I F DLV+ A G K L + R
Sbjct: 1 MKKIAVFGSAFNPPSLGHKSVIESLSHF--DLVLLVPSIAHAWG------KTMLDYETRC 52
Query: 54 ELIKQSIFHFIPD-SSNRVS 72
+L+ FI D + V
Sbjct: 53 QLVDA----FIQDLGLSNVQ 68
>gnl|CDD|184329 PRK13793, PRK13793, nicotinamide-nucleotide adenylyltransferase;
Provisional.
Length = 196
Score = 25.3 bits (55), Expect = 9.4
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 6 VYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVK---TKGFLSIQERSELI 56
V+ G F P HM I AL +++A+G ++ FL+I ER ++I
Sbjct: 8 VFIGRFQPFHLAHMQTIEIALQQSRYVILALGSAQMERNIKNPFLAI-EREQMI 60
>gnl|CDD|140212 PTZ00185, PTZ00185, ATPase alpha subunit; Provisional.
Length = 574
Score = 25.4 bits (55), Expect = 9.6
Identities = 12/57 (21%), Positives = 24/57 (42%)
Query: 99 MTDFDYEMRMTSVNRCLCPEIATIALFAKESSRYVTSTLIRHLISIDADITSFVPDP 155
M F + ++ R A + + S + + +I ++ SID I + +P P
Sbjct: 1 MRRFVAQYVAPAMGRLASTAAAGKSAAPGQKSFFKATEMIGYVHSIDGTIATLIPAP 57
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.326 0.139 0.392
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,831,937
Number of extensions: 166078
Number of successful extensions: 415
Number of sequences better than 10.0: 1
Number of HSP's gapped: 410
Number of HSP's successfully gapped: 31
Length of query: 182
Length of database: 5,994,473
Length adjustment: 87
Effective length of query: 95
Effective length of database: 4,114,577
Effective search space: 390884815
Effective search space used: 390884815
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (24.6 bits)