HHsearch alignment for GI: 254780182 and conserved domain: PRK05561
>PRK05561 DNA topoisomerase IV subunit A; Validated.
Probab=100.00 E-value=0 Score=2157.71 Aligned_cols=734 Identities=41% Similarity=0.654 Sum_probs=698.8
Q ss_pred CCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCCC
Q ss_conf 87643235666009999987678777998863137540008973678999999987899999811340425566436688
Q gi|254780182|r 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87 (910)
Q Consensus 8 ~~~~~~~~i~~~~~~~~m~~syl~Ya~svI~~RAlPd~rDGlKpv~Rrily~m~~~~~~~~~~~~K~a~ivg~v~gkyHP 87 (910)
T Consensus 3 ~~~~~~e~i~~~~~~~~~~~~yl~Ya~svi~~RalPd~rDGlKPv~RRily~m~~~~l~~~~~~~KsarivG~v~GkyHP 82 (745)
T PRK05561 3 MPDPMSEGIEDLPLEEFLEERYLRYSMYVIMDRALPDVRDGLKPVQRRILYAMSELGLTPDAKFKKSARTVGDVLGKYHP 82 (745)
T ss_pred CCCCHHCCCEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEHHHCCCCCC
T ss_conf 99832058157238999998899989999985127764458860999999999972899999973631664100557789
Q ss_pred CCHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEEC
Q ss_conf 70478999999712201115613147887088776972013578999789999998630768405330689885485034
Q gi|254780182|r 88 HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167 (910)
Q Consensus 88 HGd~siy~a~v~maq~~~~r~plidg~GnfGs~dgd~~AA~RYte~rl~~~~~~~l~~i~~~tv~~~~n~D~~~~EP~vl 167 (910)
T Consensus 83 HGD~siY~a~vrmaQ~f~~r~plidg~GNfGsidgd~~AAmRYTE~rls~~~~~~l~di~~~tv~f~~n~D~~~~EP~vL 162 (745)
T PRK05561 83 HGDSAIYDAMVRMAQDFSYRYPLVDGQGNFGSIDGDPAAAMRYTEARLSKIAELLLEEIDEGTVDFVPNFDGTLEEPTVL 162 (745)
T ss_pred CCHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEE
T ss_conf 87047999999973301315751427887789999843767889887699999999630647513205879997675543
Q ss_pred CCCCCCCHHCCCCCEEEHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCC-CCCHHHHHHHHHHCCC
Q ss_conf 322732110167610101331789854789999998876187768888886345866887443-4475889999870120
Q gi|254780182|r 168 CARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATGRG 246 (910)
Q Consensus 168 P~~~P~lL~nG~~GIAvGmaTnippHNl~Ev~~a~~~~i~~p~~~~~eL~~~i~GPDFPTGG~-I~~~~~i~~~y~tGrG 246 (910)
T Consensus 163 Pa~~PnlL~NG~~GIAvGmaTnIPpHNl~Ev~~a~i~~i~np~~t~~eL~~~i~GPDFPTGg~Ii~g~~~i~~ay~tGrG 242 (745)
T PRK05561 163 PARFPNLLLNGATGIAVGMATDIPPHNLREVIDAAIHLIDNPDATLEELMEFVPGPDFPTGGEIITGRDGIRKAYETGRG 242 (745)
T ss_pred CCCCCHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHHCCC
T ss_conf 04687411048862487664487997669999999987449999999998318899799883897288999999984767
Q ss_pred EEEEEEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCC-EEEEEEECCC-CCHHHHH
Q ss_conf 3899998865433678459999246443528999999999987166501445873037465-5799994798-8778999
Q gi|254780182|r 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIELKRG-ASADVIL 324 (910)
Q Consensus 247 ~i~iR~k~~ie~~~~~k~~ivItEiPY~vnk~~lie~Ia~lv~~~ki~gI~dirDeSdr~g-iRivielKr~-~~~~~vl 324 (910)
T Consensus 243 ~i~iRak~~iE~~~~g~~~IvItEIPY~vnk~~liekIa~lv~~kki~gI~dvrDESdr~g~iRIVIelK~~~~d~~~vl 322 (745)
T PRK05561 243 SIRVRARWEIEDLARGQWQIVITELPYQVSKAKLIEQIAEQMQAKKLPGIADVRDESDRENPVRIVIEPKSNRVDPEALM 322 (745)
T ss_pred EEEEEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCEEEEEEECCCCCCHHHHH
T ss_conf 09998899999637984179999678768489999999999970866410241036678787799999788887999999
Q ss_pred HHHHHHCCHHCCCCCEEEEEE-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999976101100000024554-1663000299999999999999999999999999988877899999987406999999
Q gi|254780182|r 325 NQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRI 403 (910)
Q Consensus 325 n~Lyk~T~Lq~sf~~N~~aL~-~g~P~~l~Lk~iL~~fi~hR~evi~rRt~~~L~ka~~R~HILeGL~~Al~nIDeVI~i 403 (910)
T Consensus 323 n~Lyk~T~Lq~sf~~N~~al~~dg~P~~l~Lk~iL~~~l~hR~~vi~rrt~~~L~Ka~~RlhIleGLliA~~~iD~VI~i 402 (745)
T PRK05561 323 NHLFATTDLESSYRVNMNVIGLDGRPRVKGLKEILSEWLDHRREVVTRRSQFRLDKVEKRLHILEGLLIAFLNIDEVIEI 402 (745)
T ss_pred HHHHHHCCCHHHCCCEEEEEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_conf 99998576242137148999379975582799999999999999999999999999999999998899999676899999
Q ss_pred HHHCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 86189978987877631269788999997402211122234452369999999998789999888799999989999999
Q gi|254780182|r 404 IRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 (910)
Q Consensus 404 IR~S~d~~eAk~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~lSe~QA~AILdMrL~rLt~LE~~kl~~E~~eL~~~ 483 (910)
T Consensus 403 IR~S~---dak~~L~~~--------------------------f~lse~QA~AIL~mrL~rLt~LE~~kl~~E~~eL~~~ 453 (745)
T PRK05561 403 IRESD---EPKANLMAR--------------------------FGLTEIQAEAILELRLRRLAKLEEIEIRKEQDELRKE 453 (745)
T ss_pred HHCCC---HHHHHHHHH--------------------------HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 97063---266777555--------------------------0879999999999999998766799999999999999
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCC--CCCCCCCCCCCCEEEEEECCCEECCCCCCCCCCCCC
Q ss_conf 998875304989999999998999998405688331001343--453010145678189990797052331000002334
Q gi|254780182|r 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRR 561 (910)
Q Consensus 484 I~~l~~IL~s~~~l~~iI~~EL~eik~kygd~RRT~I~~~~~--~i~~EdlI~~E~vvV~lS~~GyIKr~~~~~yr~Q~R 561 (910)
T Consensus 454 I~~l~~IL~s~~~~~~iI~~EL~eik~kfgd~RRT~I~~~~~~~~i~~edlI~~E~v~V~lS~~GyIKr~k~~~~~---- 529 (745)
T PRK05561 454 IAELEAILASERKLWKLIKKELKADAKKFGDPRRTPIEEREEAKAIDEEALVPDEPVTVVLSKKGWVRRAKGHDID---- 529 (745)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCEEEECCCEEEEEECCCCCC----
T ss_conf 9999999638999999999999999986389986302267420237877717676618998178049984488867----
Q ss_pred CCCCCCCCCCCCCCHHEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCC
Q ss_conf 56521100014641010113323777399995489399982000432244456554124545365562002566301256
Q gi|254780182|r 562 GGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641 (910)
Q Consensus 562 ggkG~~~~~~ke~D~v~~~~~~~t~d~LLfFTs~Gkvy~l~v~~IP~~sr~skG~pi~nll~l~~~E~I~ail~~~~~~~ 641 (910)
T Consensus 530 ----~~~~~~Ke~D~v~~~~~~~T~d~LLfFTn~Grvy~lkv~~IP--~~r~~G~pi~nll~L~~~EkIv~vl~~~~--- 600 (745)
T PRK05561 530 ----PAGLGYKEGDSLLFAFEARTTDKLLFFTSTGRVYSLPVHELP--SARGQGEPLTGLIDLEPGEEIVHVLVGDP--- 600 (745)
T ss_pred ----CCCCCCCCCCCEEEEEEEECCCEEEEEECCCEEEEEEHHHCC--CCCCCCCCHHHCCCCCCCCEEEEEEEECC---
T ss_conf ----544567778532589998069769999579759998922087--86678808988068999996999998589---
Q ss_pred CCCCCEEEEEECCCCEEEECHHHHHHCCCCCEEEEEECCCCEEEEEEECCC-CCEEEEEECCCEEEEEEHHHCCCCCCCC
Q ss_conf 668717999947991898423686204777227866158985788896189-8269999369859997587623547866
Q gi|254780182|r 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRN 720 (910)
Q Consensus 642 ~~~~~~Lvl~Tk~G~VKkt~l~ef~~~r~~G~~aikLkegD~Li~v~~~~~-~~~Iil~T~~G~~lrF~~~evr~~~GR~ 720 (910)
T Consensus 601 ---~~~lllaTk~G~~kr~~l~e~~~~~k~G~~ai~L~~gDelv~~~~i~~~~d~I~lvT~~Gk~lrF~~~evr~~-gR- 675 (745)
T PRK05561 601 ---DQKLLLASSAGYGFVVSEEDLVGRNRAGKAVINLKDGDKVLAPVPVEGDEDSLAAITQRGRLLVFPLSELPEL-SR- 675 (745)
T ss_pred ---CCEEEEEECCCEEEEEEHHHHCCCCCCCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCEEEEEHHHCCCC-CC-
T ss_conf ---8769999789329997869800446267188861899889888994699988999958982899798887775-75-
Q ss_pred CCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEE
Q ss_conf 55357675289986999897336665420000012223333333455544444444333222223200111012568679
Q gi|254780182|r 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 (910)
Q Consensus 721 a~GVkgIkL~~~D~Vv~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~I 800 (910)
T Consensus 676 gkGVkgikLk~~D~Vv~~~vv~~~~~---------------------------------------------------l~v 704 (745)
T PRK05561 676 GKGVKLIELKKEEGLADLAVLPPGDG---------------------------------------------------LTL 704 (745)
T ss_pred CCCCCEEEECCCCEEEEEEEECCCCC---------------------------------------------------EEE
T ss_conf 46801476689998999999858883---------------------------------------------------499
Q ss_pred EEEECCCCEEEEEHHHCCCCCCCCCCEEEEECCCCCCCCCEE
Q ss_conf 999759934530178848667577414887606777768689
Q gi|254780182|r 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 (910)
Q Consensus 801 L~vTe~G~GKRt~~~eyr~q~RGgkGv~~ik~~~~n~~g~lv 842 (910)
T Consensus 705 ~s~~~~g~~k~t~l~~y~~-~Rgg~G~~~~k~~~k--~gk~~ 743 (745)
T PRK05561 705 HAGKRKLTLKPKDLEEYRG-KRARRGSLLPRGLQR--VDRLS 743 (745)
T ss_pred EECCCCCCCCCCCHHHHCC-CCCCCCCCCCCCCCC--CCCCC
T ss_conf 9867876345551677462-247788678888887--89717