HHsearch alignment for GI: 254780182 and conserved domain: PRK05561

>PRK05561 DNA topoisomerase IV subunit A; Validated.
Probab=100.00  E-value=0  Score=2157.71  Aligned_cols=734  Identities=41%  Similarity=0.654  Sum_probs=698.8

Q ss_pred             CCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCCC
Q ss_conf             87643235666009999987678777998863137540008973678999999987899999811340425566436688
Q gi|254780182|r    8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP   87 (910)
Q Consensus         8 ~~~~~~~~i~~~~~~~~m~~syl~Ya~svI~~RAlPd~rDGlKpv~Rrily~m~~~~~~~~~~~~K~a~ivg~v~gkyHP   87 (910)
T Consensus         3 ~~~~~~e~i~~~~~~~~~~~~yl~Ya~svi~~RalPd~rDGlKPv~RRily~m~~~~l~~~~~~~KsarivG~v~GkyHP   82 (745)
T PRK05561          3 MPDPMSEGIEDLPLEEFLEERYLRYSMYVIMDRALPDVRDGLKPVQRRILYAMSELGLTPDAKFKKSARTVGDVLGKYHP   82 (745)
T ss_pred             CCCCHHCCCEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEHHHCCCCCC
T ss_conf             99832058157238999998899989999985127764458860999999999972899999973631664100557789


Q ss_pred             CCHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEEC
Q ss_conf             70478999999712201115613147887088776972013578999789999998630768405330689885485034
Q gi|254780182|r   88 HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL  167 (910)
Q Consensus        88 HGd~siy~a~v~maq~~~~r~plidg~GnfGs~dgd~~AA~RYte~rl~~~~~~~l~~i~~~tv~~~~n~D~~~~EP~vl  167 (910)
T Consensus        83 HGD~siY~a~vrmaQ~f~~r~plidg~GNfGsidgd~~AAmRYTE~rls~~~~~~l~di~~~tv~f~~n~D~~~~EP~vL  162 (745)
T PRK05561         83 HGDSAIYDAMVRMAQDFSYRYPLVDGQGNFGSIDGDPAAAMRYTEARLSKIAELLLEEIDEGTVDFVPNFDGTLEEPTVL  162 (745)
T ss_pred             CCHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEE
T ss_conf             87047999999973301315751427887789999843767889887699999999630647513205879997675543


Q ss_pred             CCCCCCCHHCCCCCEEEHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCC-CCCHHHHHHHHHHCCC
Q ss_conf             322732110167610101331789854789999998876187768888886345866887443-4475889999870120
Q gi|254780182|r  168 CARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATGRG  246 (910)
Q Consensus       168 P~~~P~lL~nG~~GIAvGmaTnippHNl~Ev~~a~~~~i~~p~~~~~eL~~~i~GPDFPTGG~-I~~~~~i~~~y~tGrG  246 (910)
T Consensus       163 Pa~~PnlL~NG~~GIAvGmaTnIPpHNl~Ev~~a~i~~i~np~~t~~eL~~~i~GPDFPTGg~Ii~g~~~i~~ay~tGrG  242 (745)
T PRK05561        163 PARFPNLLLNGATGIAVGMATDIPPHNLREVIDAAIHLIDNPDATLEELMEFVPGPDFPTGGEIITGRDGIRKAYETGRG  242 (745)
T ss_pred             CCCCCHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHHCCC
T ss_conf             04687411048862487664487997669999999987449999999998318899799883897288999999984767


Q ss_pred             EEEEEEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCC-EEEEEEECCC-CCHHHHH
Q ss_conf             3899998865433678459999246443528999999999987166501445873037465-5799994798-8778999
Q gi|254780182|r  247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIELKRG-ASADVIL  324 (910)
Q Consensus       247 ~i~iR~k~~ie~~~~~k~~ivItEiPY~vnk~~lie~Ia~lv~~~ki~gI~dirDeSdr~g-iRivielKr~-~~~~~vl  324 (910)
T Consensus       243 ~i~iRak~~iE~~~~g~~~IvItEIPY~vnk~~liekIa~lv~~kki~gI~dvrDESdr~g~iRIVIelK~~~~d~~~vl  322 (745)
T PRK05561        243 SIRVRARWEIEDLARGQWQIVITELPYQVSKAKLIEQIAEQMQAKKLPGIADVRDESDRENPVRIVIEPKSNRVDPEALM  322 (745)
T ss_pred             EEEEEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCEEEEEEECCCCCCHHHHH
T ss_conf             09998899999637984179999678768489999999999970866410241036678787799999788887999999


Q ss_pred             HHHHHHCCHHCCCCCEEEEEE-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999976101100000024554-1663000299999999999999999999999999988877899999987406999999
Q gi|254780182|r  325 NQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRI  403 (910)
Q Consensus       325 n~Lyk~T~Lq~sf~~N~~aL~-~g~P~~l~Lk~iL~~fi~hR~evi~rRt~~~L~ka~~R~HILeGL~~Al~nIDeVI~i  403 (910)
T Consensus       323 n~Lyk~T~Lq~sf~~N~~al~~dg~P~~l~Lk~iL~~~l~hR~~vi~rrt~~~L~Ka~~RlhIleGLliA~~~iD~VI~i  402 (745)
T PRK05561        323 NHLFATTDLESSYRVNMNVIGLDGRPRVKGLKEILSEWLDHRREVVTRRSQFRLDKVEKRLHILEGLLIAFLNIDEVIEI  402 (745)
T ss_pred             HHHHHHCCCHHHCCCEEEEEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_conf             99998576242137148999379975582799999999999999999999999999999999998899999676899999


Q ss_pred             HHHCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             86189978987877631269788999997402211122234452369999999998789999888799999989999999
Q gi|254780182|r  404 IRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE  483 (910)
Q Consensus       404 IR~S~d~~eAk~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~lSe~QA~AILdMrL~rLt~LE~~kl~~E~~eL~~~  483 (910)
T Consensus       403 IR~S~---dak~~L~~~--------------------------f~lse~QA~AIL~mrL~rLt~LE~~kl~~E~~eL~~~  453 (745)
T PRK05561        403 IRESD---EPKANLMAR--------------------------FGLTEIQAEAILELRLRRLAKLEEIEIRKEQDELRKE  453 (745)
T ss_pred             HHCCC---HHHHHHHHH--------------------------HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             97063---266777555--------------------------0879999999999999998766799999999999999


Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCC--CCCCCCCCCCCCEEEEEECCCEECCCCCCCCCCCCC
Q ss_conf             998875304989999999998999998405688331001343--453010145678189990797052331000002334
Q gi|254780182|r  484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRR  561 (910)
Q Consensus       484 I~~l~~IL~s~~~l~~iI~~EL~eik~kygd~RRT~I~~~~~--~i~~EdlI~~E~vvV~lS~~GyIKr~~~~~yr~Q~R  561 (910)
T Consensus       454 I~~l~~IL~s~~~~~~iI~~EL~eik~kfgd~RRT~I~~~~~~~~i~~edlI~~E~v~V~lS~~GyIKr~k~~~~~----  529 (745)
T PRK05561        454 IAELEAILASERKLWKLIKKELKADAKKFGDPRRTPIEEREEAKAIDEEALVPDEPVTVVLSKKGWVRRAKGHDID----  529 (745)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCEEEECCCEEEEEECCCCCC----
T ss_conf             9999999638999999999999999986389986302267420237877717676618998178049984488867----


Q ss_pred             CCCCCCCCCCCCCCHHEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCC
Q ss_conf             56521100014641010113323777399995489399982000432244456554124545365562002566301256
Q gi|254780182|r  562 GGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES  641 (910)
Q Consensus       562 ggkG~~~~~~ke~D~v~~~~~~~t~d~LLfFTs~Gkvy~l~v~~IP~~sr~skG~pi~nll~l~~~E~I~ail~~~~~~~  641 (910)
T Consensus       530 ----~~~~~~Ke~D~v~~~~~~~T~d~LLfFTn~Grvy~lkv~~IP--~~r~~G~pi~nll~L~~~EkIv~vl~~~~---  600 (745)
T PRK05561        530 ----PAGLGYKEGDSLLFAFEARTTDKLLFFTSTGRVYSLPVHELP--SARGQGEPLTGLIDLEPGEEIVHVLVGDP---  600 (745)
T ss_pred             ----CCCCCCCCCCCEEEEEEEECCCEEEEEECCCEEEEEEHHHCC--CCCCCCCCHHHCCCCCCCCEEEEEEEECC---
T ss_conf             ----544567778532589998069769999579759998922087--86678808988068999996999998589---


Q ss_pred             CCCCCEEEEEECCCCEEEECHHHHHHCCCCCEEEEEECCCCEEEEEEECCC-CCEEEEEECCCEEEEEEHHHCCCCCCCC
Q ss_conf             668717999947991898423686204777227866158985788896189-8269999369859997587623547866
Q gi|254780182|r  642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRN  720 (910)
Q Consensus       642 ~~~~~~Lvl~Tk~G~VKkt~l~ef~~~r~~G~~aikLkegD~Li~v~~~~~-~~~Iil~T~~G~~lrF~~~evr~~~GR~  720 (910)
T Consensus       601 ---~~~lllaTk~G~~kr~~l~e~~~~~k~G~~ai~L~~gDelv~~~~i~~~~d~I~lvT~~Gk~lrF~~~evr~~-gR-  675 (745)
T PRK05561        601 ---DQKLLLASSAGYGFVVSEEDLVGRNRAGKAVINLKDGDKVLAPVPVEGDEDSLAAITQRGRLLVFPLSELPEL-SR-  675 (745)
T ss_pred             ---CCEEEEEECCCEEEEEEHHHHCCCCCCCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCEEEEEHHHCCCC-CC-
T ss_conf             ---8769999789329997869800446267188861899889888994699988999958982899798887775-75-


Q ss_pred             CCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEE
Q ss_conf             55357675289986999897336665420000012223333333455544444444333222223200111012568679
Q gi|254780182|r  721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI  800 (910)
Q Consensus       721 a~GVkgIkL~~~D~Vv~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~I  800 (910)
T Consensus       676 gkGVkgikLk~~D~Vv~~~vv~~~~~---------------------------------------------------l~v  704 (745)
T PRK05561        676 GKGVKLIELKKEEGLADLAVLPPGDG---------------------------------------------------LTL  704 (745)
T ss_pred             CCCCCEEEECCCCEEEEEEEECCCCC---------------------------------------------------EEE
T ss_conf             46801476689998999999858883---------------------------------------------------499


Q ss_pred             EEEECCCCEEEEEHHHCCCCCCCCCCEEEEECCCCCCCCCEE
Q ss_conf             999759934530178848667577414887606777768689
Q gi|254780182|r  801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV  842 (910)
Q Consensus       801 L~vTe~G~GKRt~~~eyr~q~RGgkGv~~ik~~~~n~~g~lv  842 (910)
T Consensus       705 ~s~~~~g~~k~t~l~~y~~-~Rgg~G~~~~k~~~k--~gk~~  743 (745)
T PRK05561        705 HAGKRKLTLKPKDLEEYRG-KRARRGSLLPRGLQR--VDRLS  743 (745)
T ss_pred             EECCCCCCCCCCCHHHHCC-CCCCCCCCCCCCCCC--CCCCC
T ss_conf             9867876345551677462-247788678888887--89717