HHsearch alignment for GI: 254780182 and conserved domain: PRK05561

>PRK05561 DNA topoisomerase IV subunit A; Validated.
Probab=99.85  E-value=9.9e-19  Score=186.69  Aligned_cols=188  Identities=23%  Similarity=0.373  Sum_probs=156.6

Q ss_pred             CEEEEEECCCCEEEECHHHHHHCCCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCEEEEEEHHHCCCCCCCCCCCEE
Q ss_conf             17999947991898423686204777227866158985788896189826999936985999758762354786655357
Q gi|254780182|r  646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR  725 (910)
Q Consensus       646 ~~Lvl~Tk~G~VKkt~l~ef~~~r~~G~~aikLkegD~Li~v~~~~~~~~Iil~T~~G~~lrF~~~evr~~~GR~a~GVk  725 (910)
T Consensus       509 ~v~V~lS~~GyIKr~k~~~~------~~~~~~~Ke~D~v~~~~~~~T~d~LLfFTn~Grvy~lkv~~IP--~~r-~~G~p  579 (745)
T PRK05561        509 PVTVVLSKKGWVRRAKGHDI------DPAGLGYKEGDSLLFAFEARTTDKLLFFTSTGRVYSLPVHELP--SAR-GQGEP  579 (745)
T ss_pred             CCEEEECCCEEEEEECCCCC------CCCCCCCCCCCCEEEEEEEECCCEEEEEECCCEEEEEEHHHCC--CCC-CCCCC
T ss_conf             61899817804998448886------7544567778532589998069769999579759998922087--866-78808


Q ss_pred             ---EEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEE
Q ss_conf             ---67528998699989733666542000001222333333345554444444433322222320011101256867999
Q gi|254780182|r  726 ---GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT  802 (910)
Q Consensus       726 ---gIkL~~~D~Vv~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~IL~  802 (910)
T Consensus       580 i~nll~L~~~EkIv~vl~~~-----------------------------------------------------~~~~lll  606 (745)
T PRK05561        580 LTGLIDLEPGEEIVHVLVGD-----------------------------------------------------PDQKLLL  606 (745)
T ss_pred             HHHCCCCCCCCEEEEEEEEC-----------------------------------------------------CCCEEEE
T ss_conf             98806899999699999858-----------------------------------------------------9876999


Q ss_pred             EECCCCEEEEEHHHCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCC-CCEEEEEECCCEEEEEECCCCCCCCCCCCCCE
Q ss_conf             97599345301788486675774148876067777686899997289-96499994599899999010554451568738
Q gi|254780182|r  803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVV  881 (910)
Q Consensus       803 vTe~G~GKRt~~~eyr~q~RGgkGv~~ik~~~~n~~g~lv~~~~V~~-~DeIlliT~~G~iiR~~v~~I~~~gR~a~GV~  881 (910)
T Consensus       607 aTk~G~~kr~~l~e~~~~~k--~G~~ai~L~~g---Delv~~~~i~~~~d~I~lvT~~Gk~lrF~~~evr~~gR-gkGVk  680 (745)
T PRK05561        607 ASSAGYGFVVSEEDLVGRNR--AGKAVINLKDG---DKVLAPVPVEGDEDSLAAITQRGRLLVFPLSELPELSR-GKGVK  680 (745)
T ss_pred             EECCCEEEEEEHHHHCCCCC--CCEEEEEECCC---CEEEEEEEECCCCCEEEEEECCCCEEEEEHHHCCCCCC-CCCCC
T ss_conf             97893299978698004462--67188861899---88988899469998899995898289979888777575-46801


Q ss_pred             EEEECCCCEEEEEEEECCCC
Q ss_conf             89808998799999835665
Q gi|254780182|r  882 IFSTAKDERVVSVERIRESE  901 (910)
Q Consensus       882 i~~L~~~D~Vv~va~i~~~e  901 (910)
T Consensus       681 gikLk~~D~Vv~~~vv~~~~  700 (745)
T PRK05561        681 LIELKKEEGLADLAVLPPGD  700 (745)
T ss_pred             EEEECCCCEEEEEEEECCCC
T ss_conf             47668999899999985888