HHsearch alignment for GI: 254780182 and conserved domain: PRK05561
>PRK05561 DNA topoisomerase IV subunit A; Validated.
Probab=99.85 E-value=9.9e-19 Score=186.69 Aligned_cols=188 Identities=23% Similarity=0.373 Sum_probs=156.6
Q ss_pred CEEEEEECCCCEEEECHHHHHHCCCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCEEEEEEHHHCCCCCCCCCCCEE
Q ss_conf 17999947991898423686204777227866158985788896189826999936985999758762354786655357
Q gi|254780182|r 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 (910)
Q Consensus 646 ~~Lvl~Tk~G~VKkt~l~ef~~~r~~G~~aikLkegD~Li~v~~~~~~~~Iil~T~~G~~lrF~~~evr~~~GR~a~GVk 725 (910)
T Consensus 509 ~v~V~lS~~GyIKr~k~~~~------~~~~~~~Ke~D~v~~~~~~~T~d~LLfFTn~Grvy~lkv~~IP--~~r-~~G~p 579 (745)
T PRK05561 509 PVTVVLSKKGWVRRAKGHDI------DPAGLGYKEGDSLLFAFEARTTDKLLFFTSTGRVYSLPVHELP--SAR-GQGEP 579 (745)
T ss_pred CCEEEECCCEEEEEECCCCC------CCCCCCCCCCCCEEEEEEEECCCEEEEEECCCEEEEEEHHHCC--CCC-CCCCC
T ss_conf 61899817804998448886------7544567778532589998069769999579759998922087--866-78808
Q ss_pred ---EEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEE
Q ss_conf ---67528998699989733666542000001222333333345554444444433322222320011101256867999
Q gi|254780182|r 726 ---GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802 (910)
Q Consensus 726 ---gIkL~~~D~Vv~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~IL~ 802 (910)
T Consensus 580 i~nll~L~~~EkIv~vl~~~-----------------------------------------------------~~~~lll 606 (745)
T PRK05561 580 LTGLIDLEPGEEIVHVLVGD-----------------------------------------------------PDQKLLL 606 (745)
T ss_pred HHHCCCCCCCCEEEEEEEEC-----------------------------------------------------CCCEEEE
T ss_conf 98806899999699999858-----------------------------------------------------9876999
Q ss_pred EECCCCEEEEEHHHCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCC-CCEEEEEECCCEEEEEECCCCCCCCCCCCCCE
Q ss_conf 97599345301788486675774148876067777686899997289-96499994599899999010554451568738
Q gi|254780182|r 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881 (910)
Q Consensus 803 vTe~G~GKRt~~~eyr~q~RGgkGv~~ik~~~~n~~g~lv~~~~V~~-~DeIlliT~~G~iiR~~v~~I~~~gR~a~GV~ 881 (910)
T Consensus 607 aTk~G~~kr~~l~e~~~~~k--~G~~ai~L~~g---Delv~~~~i~~~~d~I~lvT~~Gk~lrF~~~evr~~gR-gkGVk 680 (745)
T PRK05561 607 ASSAGYGFVVSEEDLVGRNR--AGKAVINLKDG---DKVLAPVPVEGDEDSLAAITQRGRLLVFPLSELPELSR-GKGVK 680 (745)
T ss_pred EECCCEEEEEEHHHHCCCCC--CCEEEEEECCC---CEEEEEEEECCCCCEEEEEECCCCEEEEEHHHCCCCCC-CCCCC
T ss_conf 97893299978698004462--67188861899---88988899469998899995898289979888777575-46801
Q ss_pred EEEECCCCEEEEEEEECCCC
Q ss_conf 89808998799999835665
Q gi|254780182|r 882 IFSTAKDERVVSVERIRESE 901 (910)
Q Consensus 882 i~~L~~~D~Vv~va~i~~~e 901 (910)
T Consensus 681 gikLk~~D~Vv~~~vv~~~~ 700 (745)
T PRK05561 681 LIELKKEEGLADLAVLPPGD 700 (745)
T ss_pred EEEECCCCEEEEEEEECCCC
T ss_conf 47668999899999985888