HHsearch alignment for GI: 254780182 and conserved domain: PRK09630

>PRK09630 DNA topoisomerase IV subunit A; Provisional.
Probab=100.00  E-value=0  Score=1299.61  Aligned_cols=468  Identities=28%  Similarity=0.438  Sum_probs=426.7

Q ss_pred             ECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             00999998767877799886313754000897367899999998789999981134042556643668870478999999
Q gi|254780182|r   19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALA   98 (910)
Q Consensus        19 ~~~~~~m~~syl~Ya~svI~~RAlPd~rDGlKpv~Rrily~m~~~~~~~~~~~~K~a~ivg~v~gkyHPHGd~siy~a~v   98 (910)
T Consensus         2 ~~i~~~~~~~yl~Ya~~vI~~RAlPdvrDGLKPVqRRiLy~m~~~~---~~~~~K~ArvvG~v~g-yHPHGd~siy~alv   77 (479)
T PRK09630          2 SDVSDLFKTHFMHYASYVILERAIPHILDGLKPVQRRLLWTLFRMD---DGKMHKVANIAGRTMA-LHPHGDAPIVEALV   77 (479)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCC---CCCCCEEEEEECCEEC-CCCCCHHHHHHHHH
T ss_conf             6279999999998889999851177532588609999999983068---9987134244213511-48887278999999


Q ss_pred             HHCCCHHCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEECCCCCCCCHHC
Q ss_conf             712201115613147887088-7769720135789997899999986307684053306898854850343227321101
Q gi|254780182|r   99 RMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN  177 (910)
Q Consensus        99 ~maq~~~~r~plidg~GnfGs-~dgd~~AA~RYte~rl~~~~~~~l~~i~~~tv~~~~n~D~~~~EP~vlP~~~P~lL~n  177 (910)
T Consensus        78 rmaq----r~~LvdgqGNfGs~~dgd~~AAmRYtE~rls~~a~~~l--~~~dtv~f~~NyDgs~~EP~vLPa~~PnLLvN  151 (479)
T PRK09630         78 VLAN----KGYLIDTQGNFGNPLTGDPHAAARYIEARLSPLAKEVL--FNTDLMTFHDSYDGREKEPDILPAKLPLLLLH  151 (479)
T ss_pred             HHHC----CCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH--CCCCCCCCCCCCCCCCCCCCEEECCCCHHHHC
T ss_conf             9856----76156467888999899804677899987589999983--55685467789899855771211457187754


Q ss_pred             CCCCEEEHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEEEEE
Q ss_conf             67610101331789854789999998876187768888886345866887443447588999987012038999988654
Q gi|254780182|r  178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE  257 (910)
Q Consensus       178 G~~GIAvGmaTnippHNl~Ev~~a~~~~i~~p~~~~~eL~~~i~GPDFPTGG~I~~~~~i~~~y~tGrG~i~iR~k~~ie  257 (910)
T Consensus       152 Gs~GIAVGmAT~IpPHNl~EvidA~i~~i~~~~~~~--------~PDFPTGGii~~~~-----Y~tGrG~i~vRak~~~~  218 (479)
T PRK09630        152 GVDGIAVGMTTKIFPHNFCELLEAQIAILNDQPFTL--------LPDFPSGGLMDASE-----YQDGLGSITLRASIDII  218 (479)
T ss_pred             CCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCC--------CCCCCCCCEECHHH-----HCCCCCEEEEEEEEEEE
T ss_conf             775222345525899898999999999762898775--------89999977305466-----55789818999999997


Q ss_pred             ECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHCCHHCCC
Q ss_conf             33678459999246443528999999999987166501445873037465579999479887789999999761011000
Q gi|254780182|r  258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF  337 (910)
Q Consensus       258 ~~~~~k~~ivItEiPY~vnk~~lie~Ia~lv~~~ki~gI~dirDeSdr~giRivielKr~~~~~~vln~Lyk~T~Lq~sf  337 (910)
T Consensus       219 ~~----k~ivItEiPy~v~k~~lie~I~~~~~~~~~-~I~~i~D~s~-~~~rivI~lkr~~~~~~vl~~Lyk~T~Lq~sf  292 (479)
T PRK09630        219 ND----KTLLIKEICPSTTTETLIRSIENAAKRGII-KIDSIQDFST-DLPHIEIKLPKGIYAKDLLPPLFEHTECQVIL  292 (479)
T ss_pred             EC----CEEEEEECCCCCCHHHHHHHHHHHHHCCCC-CCCCEEECCC-CCCEEEEECCCCCCHHHHHHHHHHCCCHHHEE
T ss_conf             14----438997068656699999999999864876-6885113357-98559984799999999999998369624122


Q ss_pred             CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH---HHHHHHHHHHHHHHHCCCHH
Q ss_conf             000245541663000299999999999999999999999999988877---899999---98740699999986189978
Q gi|254780182|r  338 SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH---VLVGLA---IAVANLDEVVRIIRFSPNPE  411 (910)
Q Consensus       338 ~~N~~aL~~g~P~~l~Lk~iL~~fi~hR~evi~rRt~~~L~ka~~R~H---ILeGL~---~Al~nIDeVI~iIR~S~d~~  411 (910)
T Consensus       293 ~~N~~aI~~g~P~~l~l~eiL~~~~~~~~~~lrr~l~~-~~~~~~r~~~~k~Le~l~I~~~~~d~I~eiI~~i~~~~~~e  371 (479)
T PRK09630        293 TSKPTAIYQNKPVETSISEILKLHTEALQGYLKKELLI-LQDSLTREHYHKTLEYIFIKHKLYDTVREMLSKRKTKPSAS  371 (479)
T ss_pred             CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf             33237888890866668999999999875543466899-98999999999888899998778999999999885389899


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98787763126978899999740221112223445236999999999-87899998887999999899999999988753
Q gi|254780182|r  412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL-ELRLARLTGLGRDDIRNELNSLGIEIKECLDI  490 (910)
Q Consensus       412 eAk~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~lSe~QA~AIL-dMrL~rLt~LE~~kl~~E~~eL~~~I~~l~~I  490 (910)
T Consensus       372 d~~~~l~~~~~~~~------------------~~~~~~i~~q~~~~L~~l~l~kL~~Le~~k~~~El~~l~~~i~~l~~~  433 (479)
T PRK09630        372 DLHNAVLHALEPFL------------------HTLPTAPDKQATSQLASLTIKKILCFNENAYTKELAAIEKKQAAVQKD  433 (479)
T ss_pred             HHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999998765667------------------877543389999999998999875133999999999999999999999


Q ss_pred             HCCHHHHHHHHHHHHHHHHHHCCC--CCCCEEECCCCCCCCCCCCCCCCEE
Q ss_conf             049899999999989999984056--8833100134345301014567818
Q gi|254780182|r  491 LSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMV  539 (910)
Q Consensus       491 L~s~~~l~~iI~~EL~eik~kygd--~RRT~I~~~~~~i~~EdlI~~E~vv  539 (910)
T Consensus       434 l~---~l~kiii~eL~~ikekYGd~~eRRTeI~~~~~--~~~~~~~~e~~v  479 (479)
T PRK09630        434 LS---QLKKYTVKYLKGLLERYGHLGHRKTQITKFKA--KKTSILKQQTLI  479 (479)
T ss_pred             HH---HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC--HHHHCCCHHCCC
T ss_conf             99---99999999999999985899877675602432--343024200259