HHsearch alignment for GI: 254780182 and conserved domain: PRK09630

>PRK09630 DNA topoisomerase IV subunit A; Provisional.
Probab=97.56  E-value=0.0059  Score=45.50  Aligned_cols=112  Identities=12%  Similarity=-0.028  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHH
Q ss_conf             999999999999999999999999888778999999874-------0699999986189978987877631269788999
Q gi|254780182|r  357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVA-------NLDEVVRIIRFSPNPETARRELMQRSWNASDIKD  429 (910)
Q Consensus       357 iL~~fi~hR~evi~rRt~~~L~ka~~R~HILeGL~~Al~-------nIDeVI~iIR~S~d~~eAk~~L~~~~~~~~~~~~  429 (910)
T Consensus       308 ~l~eiL~~~~~~~~~~lrr~l~~~~~~~~r-~~~~k~Le~l~I~~~~~d~I~eiI~~i~~~~~~ed~~~~l---------  377 (479)
T PRK09630        308 SISEILKLHTEALQGYLKKELLILQDSLTR-EHYHKTLEYIFIKHKLYDTVREMLSKRKTKPSASDLHNAV---------  377 (479)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH---------
T ss_conf             689999999998755434668999899999-9999888899998778999999999885389899999999---------


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q ss_conf             99740221112223445236999999999878999988879999-998999999999887530
Q gi|254780182|r  430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI-RNELNSLGIEIKECLDIL  491 (910)
Q Consensus       430 ~~~~~~~~~~~~~~~~~f~lSe~QA~AILdMrL~rLt~LE~~kl-~~E~~eL~~~I~~l~~IL  491 (910)
T Consensus       378 -------------~~~~~~~~~~~~~~i~~q~~~~L~~l~l~kL~~Le~~k~~~El~~l~~~i  427 (479)
T PRK09630        378 -------------LHALEPFLHTLPTAPDKQATSQLASLTIKKILCFNENAYTKELAAIEKKQ  427 (479)
T ss_pred             -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             -------------98765667877543389999999998999875133999999999999999