HHsearch alignment for GI: 254780182 and conserved domain: PRK09631

>PRK09631 DNA topoisomerase IV subunit A; Provisional.
Probab=100.00  E-value=0  Score=1402.78  Aligned_cols=609  Identities=25%  Similarity=0.421  Sum_probs=511.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf             09999987678777998863137540008973678999999987899999811340425566436688704789999997
Q gi|254780182|r   20 SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR   99 (910)
Q Consensus        20 ~~~~~m~~syl~Ya~svI~~RAlPd~rDGlKpv~Rrily~m~~~~~~~~~~~~K~a~ivg~v~gkyHPHGd~siy~a~v~   99 (910)
T Consensus         2 ~i~~~~~~~~l~Ya~~VI~~RAlPdv~DGLKPvqRRiL~~m~~~~---~~~~~K~A~ivG~~m-kyHPHGd~siy~alV~   77 (626)
T PRK09631          2 DIKTLLKDNFLQYSSYVIKDRAIASVIDGFKPVQRRIIHSLFEMH---DGNFHKVANVVGNTM-KYHPHGDTSIYEALVN   77 (626)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCC---CCCCCEEEEEECCCC-CCCCCCCHHHHHHHHH
T ss_conf             868999999998889998850277521488659999999998648---999857628850511-2689982479999999


Q ss_pred             HCCCHHCCCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEECCCCCCCCHHCC
Q ss_conf             122011156131478870887-7697201357899978999999863076840533068988548503432273211016
Q gi|254780182|r  100 MAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG  178 (910)
Q Consensus       100 maq~~~~r~plidg~GnfGs~-dgd~~AA~RYte~rl~~~~~~~l~~i~~~tv~~~~n~D~~~~EP~vlP~~~P~lL~nG  178 (910)
T Consensus        78 maq----~~~lid~qGNfGsi~~gD~aAA~RYtEaRls~~a~e~l--~~~~tv~~~~nyDg~~~EP~vLP~~~PnLL~nG  151 (626)
T PRK09631         78 IAN----KDLFIEKQGNFGNLFTGDPASASRYIECRLTPLAFEVL--YSKEITSYEPSYDGRNNEPLIFPAKIPVILIQG  151 (626)
T ss_pred             HHC----CCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH--CCCCCCEECCCCCCCCCCCEEEECCCCHHHHCC
T ss_conf             856----57605278888899998834566689897799999983--787851201278987446405553573777526


Q ss_pred             CCCEEEHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEEEEEE
Q ss_conf             76101013317898547899999988761877688888863458668874434475889999870120389999886543
Q gi|254780182|r  179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK  258 (910)
Q Consensus       179 ~~GIAvGmaTnippHNl~Ev~~a~~~~i~~p~~~~~eL~~~i~GPDFPTGG~I~~~~~i~~~y~tGrG~i~iR~k~~ie~  258 (910)
T Consensus       152 ~~GIAVGmaT~IpPHNl~Evida~i~~l~~~~~~~--------~PDFPTGG~i~~-----~~Y~tG~G~i~vRak~e~~~  218 (626)
T PRK09631        152 SEGIAVGMAAKILPHNFNEILEAVKSELLGESYDL--------YPDFPTGGIVDV-----NEYADGNGKVLVRAKIETTD  218 (626)
T ss_pred             CCCHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCC--------CCCCCCCCCCCH-----HHHHCCCEEEEEEEEEEECC
T ss_conf             74221222106899888999999998533898766--------999998751033-----25634862799999999817


Q ss_pred             CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHCCHHCCCC
Q ss_conf             36784599992464435289999999999871665014458730374655799994798877899999997610110000
Q gi|254780182|r  259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFS  338 (910)
Q Consensus       259 ~~~~k~~ivItEiPY~vnk~~lie~Ia~lv~~~ki~gI~dirDeSdr~giRivielKr~~~~~~vln~Lyk~T~Lq~sf~  338 (910)
T Consensus       219 ----~~~ivItEiPy~v~k~~lie~I~~~~~~~ki~-I~~i~D~s~-~~vrIvi~lk~~~~~~~vln~Ly~~T~lq~sf~  292 (626)
T PRK09631        219 ----EKTIVIRELPFGETTESLIASIEKAIRKNYIK-VSSINDFTA-ENVEIELKLPRGVYASEVIEKLYHYTNCQVSIS  292 (626)
T ss_pred             ----CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCC-CCCCCCCCC-CCEEEEEEECCCCCHHHHHHHHHHHCCHHHEEC
T ss_conf             ----83599995687777899999999999725676-211414689-827999998999998999999875097132176


Q ss_pred             CEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             00245541663000299999999999999999999999999988877899999987406999999861899789878776
Q gi|254780182|r  339 VNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM  418 (910)
Q Consensus       339 ~N~~aL~~g~P~~l~Lk~iL~~fi~hR~evi~rRt~~~L~ka~~R~HILeGL~~Al~nIDeVI~iIR~S~d~~eAk~~L~  418 (910)
T Consensus       293 ~n~~ai~~~~P~~l~l~eiL~~~~~h~~~vl~r~le~~l~k~~er~H~~sLe~IfIe~--rIy~~Ie~~~~~e~v~~~i~  370 (626)
T PRK09631        293 VNLLLLSDRYPVIYTVTDIIKFHAEHLQKILKMELELERSKILEKIFSKTLEQIFIEK--KIYKILETISKEEDVVSIVL  370 (626)
T ss_pred             CEEEEEECCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCCCHHHHHHHHH
T ss_conf             2689998998279879999999999999999999998899899868999999998666--68999884201688999999


Q ss_pred             HHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf             31269788999997402211122234452369999999998789999888799999989999999998875304989999
Q gi|254780182|r  419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL  498 (910)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~lSe~QA~AILdMrL~rLt~LE~~kl~~E~~eL~~~I~~l~~IL~s~~~l~  498 (910)
T Consensus       371 ~~l~pf~-----------------~~l~r~ite~d~~aLleirL~RIT~~didK~~eei~~L~~eI~eI~~~L~~---l~  430 (626)
T PRK09631        371 SELLPFK-----------------SSLSRDVTEDDVENLLKIPIRKISLFDIDKNNKDIRILNKELKSIESNIKS---IK  430 (626)
T ss_pred             HHHHHHH-----------------HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
T ss_conf             8777678-----------------876301579999999998998853430887999999999999999863776---89


Q ss_pred             HHHHHHHHHHHHHCCCC--CCCEEECCCCCCCCCCCCCCCCEEEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             99999899999840568--8331001343453010145678189990797052331000002334565211000146410
Q gi|254780182|r  499 GIIKQELLSVKDELDTP--RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF  576 (910)
Q Consensus       499 ~iI~~EL~eik~kygd~--RRT~I~~~~~~i~~EdlI~~E~vvV~lS~~GyIKr~~~~~yr~Q~RggkG~~~~~~ke~D~  576 (910)
T Consensus       431 ~~~I~~l~~Lk~kYG~~~~RKTEI--------------------~lfd~i~aKrVa~~n~Kly~nr~~GFiGtslKkdDf  490 (626)
T PRK09631        431 GYAINFIDKLLAKYSKEYKRKTEI--------------------SLIKSKNVREIATKNMKVYLNLETGFVGTSLIDGEF  490 (626)
T ss_pred             HHHHHHHHHHHHHHCCCCCCEEEE--------------------EEECCEEEEEEECCCCEEEECCCCCEEEECCCCCCE
T ss_conf             999999999998735477725799--------------------976444369957023325665888556103567845


Q ss_pred             HEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCC-CEEEEEEECCCCCCCCCCEEEEEECCC
Q ss_conf             1011332377739999548939998200043224445655412454536556-200256630125666871799994799
Q gi|254780182|r  577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE-RITTIMPFPEDESSWNNLYVVFATKHG  655 (910)
Q Consensus       577 v~~~~~~~t~d~LLfFTs~Gkvy~l~v~~IP~~sr~skG~pi~nll~l~~~E-~I~ail~~~~~~~~~~~~~Lvl~Tk~G  655 (910)
T Consensus       491 V---~~CSd~DdILvF~d-G~---ykV~kV~~K~Fvgk~i~~v~v~~k~d~~~tiyn~IY-rDgk-----------~g~~  551 (626)
T PRK09631        491 I---GNASYYDKILIFKD-GS---YVLKNIEDKTFIDKKNVCVLVYDINNSKEQVFSIIY-RDKL-----------DNFY  551 (626)
T ss_pred             E---EECCCCCEEEEEEC-CE---EEEEECCCCCEECCCCEEEEEEECCCCCCEEEEEEE-ECCC-----------CCCE
T ss_conf             6---73356653999989-85---999985776054688379999852787650799999-8699-----------8836


Q ss_pred             CEEEECHHHHHHCCCCCEEEEEECCCCEEEEEEECCCCCEEEEE-ECCCEEEEEEHHHCCCCCCCCCCCEEE
Q ss_conf             18984236862047772278661589857888961898269999-369859997587623547866553576
Q gi|254780182|r  656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGVRG  726 (910)
Q Consensus       656 ~VKkt~l~ef~~~r~~G~~aikLkegD~Li~v~~~~~~~~Iil~-T~~G~~lrF~~~evr~~~GR~a~GVkg  726 (910)
T Consensus       552 yiKRF~V~~~trdK--~Y~l--~~~~s~~l~fs~n~-n--l~~~~~~k~~~~~~df~~~~-iKgr~skGn~v  615 (626)
T PRK09631        552 YVKRFKIDKFILDK--VYEF--LPENDEFLDFSLNP-E--FVPFSRSKDIVKMIEIDNFM-VKSRSSKGKRI  615 (626)
T ss_pred             EEEEEEECCEEECC--CCCC--CCCCCEEEEEEECC-C--CCCCCCCCCEEEEECHHHEE-EECCCCCCEEE
T ss_conf             89998832388425--2245--79998799999777-6--57454424514773211403-41444555176