HHsearch alignment for GI: 254780182 and conserved domain: PRK13979

>PRK13979 DNA topoisomerase IV subunit A; Provisional,Validated.
Probab=99.94  E-value=4.9e-24  Score=234.12  Aligned_cols=240  Identities=21%  Similarity=0.286  Sum_probs=162.0

Q ss_pred             CCEEEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEECCCCE---EEEEECCCCEEEEECCCCCCCCCC
Q ss_conf             78189990797052331000002334565211000146410101133237773---999954893999820004322444
Q gi|254780182|r  536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS---VLFFSSLGFVYKEKVWRLPIGSPQ  612 (910)
Q Consensus       536 E~vvV~lS~~GyIKr~~~~~yr~Q~RggkG~~~~~~ke~D~v~~~~~~~t~d~---LLfFTs~Gkvy~l~v~~IP~~sr~  612 (910)
T Consensus       622 ~~~lvfaTk~G~VKKt~L~~f~~-~~sg--iiAIkL~egDeLI~V~l~~~~~~~~~i~l~T~~G~~irf~e~~vR~mGR~  698 (959)
T PRK13979        622 QKDFIFITDSGGIKKTSLDKFNT-NYSK--LMALKLKKGEELIKVKLVDRTREEKFLKIKTKKGLSFTVEEPELEPVDRN  698 (959)
T ss_pred             CCEEEEEECCCEEECCCHHHCCC-CCCC--CEEEECCCCCEEEEEEEECCCCCCEEEEEECCCCEEEECCCHHCCCCCCC
T ss_conf             75499992898688373898285-5678--36666699987987897358887507999658965997142022457876


Q ss_pred             CCCCC---------------------------------------------------------------------------
Q ss_conf             56554---------------------------------------------------------------------------
Q gi|254780182|r  613 ARGKA---------------------------------------------------------------------------  617 (910)
Q Consensus       613 skG~p---------------------------------------------------------------------------  617 (910)
T Consensus       699 a~GVrgi~L~~~D~Vvsm~i~~~~e~~~~~~~i~~~g~i~~~~~~~~~~~~~~~~~~~~~ili~~~~G~~~~~~~~~~~~  778 (959)
T PRK13979        699 ILGYQLFNLSPNDSIKKVDFCDNYEYKEFYININKKGIIKISDLKKNKSHISLKTNSSKNLLLFSDKGKVYKIPAFMLQN  778 (959)
T ss_pred             CCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCEEECCHHHCCC
T ss_conf             66752143399998986102244420000023342002332210011111111356631135432577233032432023


Q ss_pred             -------CEEEEE-CCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEECHHHHHHCCCCCEEEEEECCCCEEEEEEE
Q ss_conf             -------124545-365562002566301256668717999947991898423686204777227866158985788896
Q gi|254780182|r  618 -------LINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET  689 (910)
Q Consensus       618 -------i~nll~-l~~~E~I~ail~~~~~~~~~~~~~Lvl~Tk~G~VKkt~l~ef~~~r~~G~~aikLkegD~Li~v~~  689 (910)
T Consensus       779 ~~~~g~~i~~~~~~~~~~e~vi~~~~~~~~---~e~~~il~vTe~G~GKRT~~~eyr~~g~~~~~~k~~~~~~~~v~~~~  855 (959)
T PRK13979        779 IEESGINISALTGDFEKKESIINAISIFEF---EEDLSIYFFSKKGLVKKTLLSEFKGEGNSTQVYKFKHKEDELVSVDI  855 (959)
T ss_pred             CCCCCCCCHHHHHHHCCCCCEEEEEECCCC---CCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEEEEECCCCEEEEEE
T ss_conf             355564502222121022302466520357---77615999935897466656773346786489998844897899997


Q ss_pred             -CCCCCEEEEEECCCEEEEEEHHHCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             -1898269999369859997587623547866553576752899869998973366654200000122233333334555
Q gi|254780182|r  690 -CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD  768 (910)
Q Consensus       690 -~~~~~~Iil~T~~G~~lrF~~~evr~~~GR~a~GVkgIkL~~~D~Vv~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~  768 (910)
T Consensus       856 ~~~~~d~imliT~~G~~IR~~v~~I~~~-GR~tqGV~li~L~~~dkVV~~~~i~~~~~----------------------  912 (959)
T PRK13979        856 NEHEQKNILIITKKGMAIRFKSEAVNPM-GKIASGVTGISLKDEDKVIFGSIIDENDT----------------------  912 (959)
T ss_pred             ECCCCCEEEEEECCCEEEEEEHHHCCCC-CCCCCCEEEEECCCCCEEEEEEEECCCCC----------------------
T ss_conf             0489963899907987999872434702-60368806897389987999999747777----------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCEEEEEHHHCCCCCCCCCCEEEEECC
Q ss_conf             44444444333222223200111012568679999759934530178848667577414887606
Q gi|254780182|r  769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS  833 (910)
Q Consensus       769 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~IL~vTe~G~GKRt~~~eyr~q~RGgkGv~~ik~~  833 (910)
T Consensus       913 -----------------------------~~~~~~~k~~~~~~~~~~~~~~q~~~g~g~~~~~~~  948 (959)
T PRK13979        913 -----------------------------RKIKLKSKAKDKGEIEIEDIKLQNRAGRGNSLMPLL  948 (959)
T ss_pred             -----------------------------CEEEEEECCCCCCEEEHHHHHHCCCCCCCCEEEEEE
T ss_conf             -----------------------------459999738866278711311000267872478862