HHsearch alignment for GI: 254780182 and conserved domain: PRK13979
>PRK13979 DNA topoisomerase IV subunit A; Provisional,Validated.
Probab=99.94 E-value=4.9e-24 Score=234.12 Aligned_cols=240 Identities=21% Similarity=0.286 Sum_probs=162.0
Q ss_pred CCEEEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEECCCCE---EEEEECCCCEEEEECCCCCCCCCC
Q ss_conf 78189990797052331000002334565211000146410101133237773---999954893999820004322444
Q gi|254780182|r 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS---VLFFSSLGFVYKEKVWRLPIGSPQ 612 (910)
Q Consensus 536 E~vvV~lS~~GyIKr~~~~~yr~Q~RggkG~~~~~~ke~D~v~~~~~~~t~d~---LLfFTs~Gkvy~l~v~~IP~~sr~ 612 (910)
T Consensus 622 ~~~lvfaTk~G~VKKt~L~~f~~-~~sg--iiAIkL~egDeLI~V~l~~~~~~~~~i~l~T~~G~~irf~e~~vR~mGR~ 698 (959)
T PRK13979 622 QKDFIFITDSGGIKKTSLDKFNT-NYSK--LMALKLKKGEELIKVKLVDRTREEKFLKIKTKKGLSFTVEEPELEPVDRN 698 (959)
T ss_pred CCEEEEEECCCEEECCCHHHCCC-CCCC--CEEEECCCCCEEEEEEEECCCCCCEEEEEECCCCEEEECCCHHCCCCCCC
T ss_conf 75499992898688373898285-5678--36666699987987897358887507999658965997142022457876
Q ss_pred CCCCC---------------------------------------------------------------------------
Q ss_conf 56554---------------------------------------------------------------------------
Q gi|254780182|r 613 ARGKA--------------------------------------------------------------------------- 617 (910)
Q Consensus 613 skG~p--------------------------------------------------------------------------- 617 (910)
T Consensus 699 a~GVrgi~L~~~D~Vvsm~i~~~~e~~~~~~~i~~~g~i~~~~~~~~~~~~~~~~~~~~~ili~~~~G~~~~~~~~~~~~ 778 (959)
T PRK13979 699 ILGYQLFNLSPNDSIKKVDFCDNYEYKEFYININKKGIIKISDLKKNKSHISLKTNSSKNLLLFSDKGKVYKIPAFMLQN 778 (959)
T ss_pred CCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCEEECCHHHCCC
T ss_conf 66752143399998986102244420000023342002332210011111111356631135432577233032432023
Q ss_pred -------CEEEEE-CCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEECHHHHHHCCCCCEEEEEECCCCEEEEEEE
Q ss_conf -------124545-365562002566301256668717999947991898423686204777227866158985788896
Q gi|254780182|r 618 -------LINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET 689 (910)
Q Consensus 618 -------i~nll~-l~~~E~I~ail~~~~~~~~~~~~~Lvl~Tk~G~VKkt~l~ef~~~r~~G~~aikLkegD~Li~v~~ 689 (910)
T Consensus 779 ~~~~g~~i~~~~~~~~~~e~vi~~~~~~~~---~e~~~il~vTe~G~GKRT~~~eyr~~g~~~~~~k~~~~~~~~v~~~~ 855 (959)
T PRK13979 779 IEESGINISALTGDFEKKESIINAISIFEF---EEDLSIYFFSKKGLVKKTLLSEFKGEGNSTQVYKFKHKEDELVSVDI 855 (959)
T ss_pred CCCCCCCCHHHHHHHCCCCCEEEEEECCCC---CCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEEEEECCCCEEEEEE
T ss_conf 355564502222121022302466520357---77615999935897466656773346786489998844897899997
Q ss_pred -CCCCCEEEEEECCCEEEEEEHHHCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -1898269999369859997587623547866553576752899869998973366654200000122233333334555
Q gi|254780182|r 690 -CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 (910)
Q Consensus 690 -~~~~~~Iil~T~~G~~lrF~~~evr~~~GR~a~GVkgIkL~~~D~Vv~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 768 (910)
T Consensus 856 ~~~~~d~imliT~~G~~IR~~v~~I~~~-GR~tqGV~li~L~~~dkVV~~~~i~~~~~---------------------- 912 (959)
T PRK13979 856 NEHEQKNILIITKKGMAIRFKSEAVNPM-GKIASGVTGISLKDEDKVIFGSIIDENDT---------------------- 912 (959)
T ss_pred ECCCCCEEEEEECCCEEEEEEHHHCCCC-CCCCCCEEEEECCCCCEEEEEEEECCCCC----------------------
T ss_conf 0489963899907987999872434702-60368806897389987999999747777----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCEEEEEHHHCCCCCCCCCCEEEEECC
Q ss_conf 44444444333222223200111012568679999759934530178848667577414887606
Q gi|254780182|r 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 (910)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~IL~vTe~G~GKRt~~~eyr~q~RGgkGv~~ik~~ 833 (910)
T Consensus 913 -----------------------------~~~~~~~k~~~~~~~~~~~~~~q~~~g~g~~~~~~~ 948 (959)
T PRK13979 913 -----------------------------RKIKLKSKAKDKGEIEIEDIKLQNRAGRGNSLMPLL 948 (959)
T ss_pred -----------------------------CEEEEEECCCCCCEEEHHHHHHCCCCCCCCEEEEEE
T ss_conf -----------------------------459999738866278711311000267872478862