HHsearch results for GI: 254780182 and protein with PDBid: 1zi0_A

>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=99.91  E-value=4.2e-22  Score=214.93  Aligned_cols=189  Identities=22%  Similarity=0.350  Sum_probs=65.3

Q ss_pred             EEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf             89990797052331000002334565211000146410101133237773999954893999820004322444565541
Q gi|254780182|r  539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL  618 (910)
Q Consensus       539 vV~lS~~GyIKr~~~~~yr~Q~RggkG~~~~~~ke~D~v~~~~~~~t~d~LLfFTs~Gkvy~l~v~~IP~~sr~skG~pi  618 (910)
                      .+.+|++|+|||+++++|...++  .|...++++++|.+..+..++..+.++++|+.|++......++|..+|+++|.. 
T Consensus       112 l~~~T~~G~iKr~~l~~f~~~r~--~g~~ai~L~~~Delv~v~~~~~~~~v~l~T~~G~~lrf~~~~v~~~gr~a~GV~-  188 (307)
T 1zi0_A          112 VFMATANGTVKKTVLTEFNRLRT--AGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVR-  188 (307)
T ss_dssp             EEEEETTSEEEEEEGGGGTTCCT--TCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE-
T ss_pred             EEEEECCCCEEEEECCCCCCCCC--CCCEEEECCCCCEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCEE-
T ss_conf             99996787178730310257673--570877558999999999947997399998387489860330003788887767-


Q ss_pred             EEEEECCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEECHHHHHHCCCC--CEEEEEEC-CCCEEEEEEECCCCCE
Q ss_conf             24545365562002566301256668717999947991898423686204777--22786615-8985788896189826
Q gi|254780182|r  619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLD-SRDEILSVETCTQEND  695 (910)
Q Consensus       619 ~nll~l~~~E~I~ail~~~~~~~~~~~~~Lvl~Tk~G~VKkt~l~ef~~~r~~--G~~aikLk-egD~Li~v~~~~~~~~  695 (910)
                        -+.|.++++|+++..++      ++.+|+++|.+|++||+++++|....+.  |..++++. .++.++.+..+.+.++
T Consensus       189 --gi~L~~~d~vv~~~~~~------~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~~Gv~~~k~~~~~~~~v~~~~v~~~d~  260 (307)
T 1zi0_A          189 --GIRLGEGDKVVSLIVPR------GDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQ  260 (307)
T ss_dssp             --CCCCCTTCCEEEEECCC------SSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTCE
T ss_pred             --EEECCCCCEEEEEEECC------CCCEEEEEECCCEEEEECCCEEEEECCCCCCCEEEECCCCCCCEEEEEECCCCCE
T ss_conf             --05708999999998613------8716998744860599402143120456557142202566773899998289987


Q ss_pred             EEEEECCCEEEEEEHHHCCCCCCCCCCCEEEEECCCCCEEEEEE
Q ss_conf             99993698599975876235478665535767528998699989
Q gi|254780182|r  696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA  739 (910)
Q Consensus       696 Iil~T~~G~~lrF~~~evr~~~GR~a~GVkgIkL~~~D~Vv~~~  739 (910)
                      +++.|++|+++||+.+++|.+ ||.++||+.|+|.++|+|++++
T Consensus       261 ill~T~~G~~ir~~~~~i~~~-gR~t~Gv~li~L~~~d~Vv~v~  303 (307)
T 1zi0_A          261 IMMITDAGTLVRTRVSEISIV-GRNTQGVILIRTAEDENVVGLQ  303 (307)
T ss_dssp             EEEEESSCCEEEEEGGGSCBC-CSSCCCEECSCCCTTCCEEEEE
T ss_pred             EEEEECCCEEEEEEHHHCCCC-CCCCCCEEEEECCCCCEEEEEE
T ss_conf             999918997999885465667-8889987979879999899999