HHsearch results for GI: 254780182 and protein with PDBid: 1zi0_A
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=99.91 E-value=4.2e-22 Score=214.93 Aligned_cols=189 Identities=22% Similarity=0.350 Sum_probs=65.3
Q ss_pred EEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 89990797052331000002334565211000146410101133237773999954893999820004322444565541
Q gi|254780182|r 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 (910)
Q Consensus 539 vV~lS~~GyIKr~~~~~yr~Q~RggkG~~~~~~ke~D~v~~~~~~~t~d~LLfFTs~Gkvy~l~v~~IP~~sr~skG~pi 618 (910)
.+.+|++|+|||+++++|...++ .|...++++++|.+..+..++..+.++++|+.|++......++|..+|+++|..
T Consensus 112 l~~~T~~G~iKr~~l~~f~~~r~--~g~~ai~L~~~Delv~v~~~~~~~~v~l~T~~G~~lrf~~~~v~~~gr~a~GV~- 188 (307)
T 1zi0_A 112 VFMATANGTVKKTVLTEFNRLRT--AGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVR- 188 (307)
T ss_dssp EEEEETTSEEEEEEGGGGTTCCT--TCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE-
T ss_pred EEEEECCCCEEEEECCCCCCCCC--CCCEEEECCCCCEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCEE-
T ss_conf 99996787178730310257673--570877558999999999947997399998387489860330003788887767-
Q ss_pred EEEEECCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEECHHHHHHCCCC--CEEEEEEC-CCCEEEEEEECCCCCE
Q ss_conf 24545365562002566301256668717999947991898423686204777--22786615-8985788896189826
Q gi|254780182|r 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLD-SRDEILSVETCTQEND 695 (910)
Q Consensus 619 ~nll~l~~~E~I~ail~~~~~~~~~~~~~Lvl~Tk~G~VKkt~l~ef~~~r~~--G~~aikLk-egD~Li~v~~~~~~~~ 695 (910)
-+.|.++++|+++..++ ++.+|+++|.+|++||+++++|....+. |..++++. .++.++.+..+.+.++
T Consensus 189 --gi~L~~~d~vv~~~~~~------~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~~Gv~~~k~~~~~~~~v~~~~v~~~d~ 260 (307)
T 1zi0_A 189 --GIRLGEGDKVVSLIVPR------GDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQ 260 (307)
T ss_dssp --CCCCCTTCCEEEEECCC------SSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTCE
T ss_pred --EEECCCCCEEEEEEECC------CCCEEEEEECCCEEEEECCCEEEEECCCCCCCEEEECCCCCCCEEEEEECCCCCE
T ss_conf --05708999999998613------8716998744860599402143120456557142202566773899998289987
Q ss_pred EEEEECCCEEEEEEHHHCCCCCCCCCCCEEEEECCCCCEEEEEE
Q ss_conf 99993698599975876235478665535767528998699989
Q gi|254780182|r 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739 (910)
Q Consensus 696 Iil~T~~G~~lrF~~~evr~~~GR~a~GVkgIkL~~~D~Vv~~~ 739 (910)
+++.|++|+++||+.+++|.+ ||.++||+.|+|.++|+|++++
T Consensus 261 ill~T~~G~~ir~~~~~i~~~-gR~t~Gv~li~L~~~d~Vv~v~ 303 (307)
T 1zi0_A 261 IMMITDAGTLVRTRVSEISIV-GRNTQGVILIRTAEDENVVGLQ 303 (307)
T ss_dssp EEEEESSCCEEEEEGGGSCBC-CSSCCCEECSCCCTTCCEEEEE
T ss_pred EEEEECCCEEEEEEHHHCCCC-CCCCCCEEEEECCCCCEEEEEE
T ss_conf 999918997999885465667-8889987979879999899999