HHsearch results for GI: 254780182 and protein with PDBid: 2inr_A
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=100.00 E-value=0 Score=1261.00 Aligned_cols=491 Identities=42% Similarity=0.725 Sum_probs=482.9
Q ss_pred CCCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCCCCCH
Q ss_conf 43235666009999987678777998863137540008973678999999987899999811340425566436688704
Q gi|254780182|r 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGN 90 (910)
Q Consensus 11 ~~~~~i~~~~~~~~m~~syl~Ya~svI~~RAlPd~rDGlKpv~Rrily~m~~~~~~~~~~~~K~a~ivg~v~gkyHPHGd 90 (910)
+..+.|.+++|+++|+++|++||||||++|||||+|||||||||||||||++++++++++|+|||++||+|||+||||||
T Consensus 23 ~~~~~i~~~~~~~~~~~~~~~Ya~~vi~~RaiP~~~DGLKP~qRkIL~~~~~~~l~~~~~~~K~A~~vg~v~~~YHpHGe 102 (514)
T 2inr_A 23 EVSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGD 102 (514)
T ss_dssp ------------------------------CCCBTTTCCCHHHHHHHHHHHHHTCCSSSCCEEHHHHHHHHHHHTCC---
T ss_pred CCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHCCCCCH
T ss_conf 30264153449999999999878898773027742248848999999999970788898821007899998865379848
Q ss_pred HHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEECCCC
Q ss_conf 78999999712201115613147887088776972013578999789999998630768405330689885485034322
Q gi|254780182|r 91 AAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170 (910)
Q Consensus 91 ~siy~a~v~maq~~~~r~plidg~GnfGs~dgd~~AA~RYte~rl~~~~~~~l~~i~~~tv~~~~n~D~~~~EP~vlP~~ 170 (910)
+|+|+|||||||+|+++|||++|||||||++|++||||||||||||++|..||.++|+++|+|+|||||+..||+|||+.
T Consensus 103 ~Sl~~tiv~mAQ~f~~~~~L~~~~G~fGs~~~~~~Aa~RYi~trLs~~a~~if~~~d~~~l~~~~n~Dg~~~EP~~y~pi 182 (514)
T 2inr_A 103 SSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSR 182 (514)
T ss_dssp CHHHHHHHHTTCTTTCSSCSEEEESCCCCTTCCCCCCTTTCEEEECTTHHHHSTTTTSSCSCEEECTTSSSEEESSCCCS
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCC
T ss_conf 89999999985540056535157899999999851147799988768999997643757426766889973177402576
Q ss_pred CCCCHHCCCCCEEEHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEE
Q ss_conf 73211016761010133178985478999999887618776888888634586688744344758899998701203899
Q gi|254780182|r 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 (910)
Q Consensus 171 ~P~lL~nG~~GIAvGmaTnippHNl~Ev~~a~~~~i~~p~~~~~eL~~~i~GPDFPTGG~I~~~~~i~~~y~tGrG~i~i 250 (910)
||+||||||+||||||||||||||+.|||+||+++|++|++++++||+++|||||||||+|.+.+|+.++|.||||+|++
T Consensus 183 iP~vLvNGs~GIgtG~sT~IPphNp~evi~~~~~~l~~~~~~~~el~~~~~GPdFptGg~I~~~~~~~~~y~~G~G~i~~ 262 (514)
T 2inr_A 183 FPNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIV 262 (514)
T ss_dssp SCHHHHHCEECC--CCCCEECCBCHHHHHHHHHHHHHCTTCCHHHHTTTCCSBCCTTCCEEECHHHHHHHHHHSEEEEEE
T ss_pred CCHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCEEECCCHHHHHHHCCCEEEEE
T ss_conf 73898736776223200377998999999999999649999879996207799899984687761178886268369998
Q ss_pred EEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 99886543367845999924644352899999999998716650144587303746557999947988778999999976
Q gi|254780182|r 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRY 330 (910)
Q Consensus 251 R~k~~ie~~~~~k~~ivItEiPY~vnk~~lie~Ia~lv~~~ki~gI~dirDeSdr~giRivielKr~~~~~~vln~Lyk~ 330 (910)
||++++|+.+.|+++|+||||||++++++++++|+++++++|+++|+|+||+||++|+||||++|++++++.+++.|||+
T Consensus 263 ~~~~~ie~~~~g~~~i~ItElP~~~~~~~~~~~i~~l~~~~ki~~i~d~~d~s~~~~i~ivi~~~~~~~~~~~~~~L~k~ 342 (514)
T 2inr_A 263 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELKKDVNSESIKNYLYKN 342 (514)
T ss_dssp ECEEEECC----CCEEEEEECCTTCCHHHHHHHHHHHHHHTSCC---CEEECCBTTBCCEEEEC------CHHHHHHTTS
T ss_pred EEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 44899997379826899984355456778999999998559878700303246887329999805762078888899850
Q ss_pred CCHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 10110000002455416630002999999999999999999999999999888778999999874069999998618997
Q gi|254780182|r 331 TSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410 (910)
Q Consensus 331 T~Lq~sf~~N~~aL~~g~P~~l~Lk~iL~~fi~hR~evi~rRt~~~L~ka~~R~HILeGL~~Al~nIDeVI~iIR~S~d~ 410 (910)
|+||+||++||+++++++|+.+++.+||++|++||+++++||++|+|+++++|+|+++|++.++.++|++|++||+|+++
T Consensus 343 t~l~st~~~n~~~l~~~~pk~~~l~eIL~~f~~~R~~~y~kR~~~~L~k~e~rl~il~~~i~~i~~id~vi~iIr~sk~~ 422 (514)
T 2inr_A 343 SDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNK 422 (514)
T ss_dssp STTEEEEEEECEEEETTEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCCSH
T ss_pred CCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHCCCCH
T ss_conf 63101222368983399146677899999999999999999999999999999977532312775422144422217998
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89878776312697889999974022111222344523699999999987899998887999999899999999988753
Q gi|254780182|r 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 (910)
Q Consensus 411 ~eAk~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~lSe~QA~AILdMrL~rLt~LE~~kl~~E~~eL~~~I~~l~~I 490 (910)
++|+..|+++ |+||+.||++||+|||++||+++++||++|+++|.++|++|+++
T Consensus 423 ~e~~~~L~k~--------------------------f~~se~qadyLL~M~L~~LT~eei~kL~~E~~el~~ei~eL~~i 476 (514)
T 2inr_A 423 RDAKENLIEV--------------------------YEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHI 476 (514)
T ss_dssp HHHHHHHHTT--------------------------SSCCHHHHHHHHTCCGGGGSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--------------------------CCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999998874--------------------------59999999999827899870689999999999999999999998
Q ss_pred HCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCC
Q ss_conf 0498999999999899999840568833100134345
Q gi|254780182|r 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM 527 (910)
Q Consensus 491 L~s~~~l~~iI~~EL~eik~kygd~RRT~I~~~~~~i 527 (910)
|+|++.+|+++++||.+++++||+||||+|..+.+++
T Consensus 477 L~s~~~l~~~i~~EL~el~kky~~~RrT~I~~~~~e~ 513 (514)
T 2inr_A 477 LDNHDALLNVIKEELNEIKKKFKSERLSLIEAEIEEI 513 (514)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHCCCCCCEEESSCCC-
T ss_pred HCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHC
T ss_conf 6899999999999999999983898861342666423