HHsearch results for GI: 254780182 and protein with PDBid: 2xcs_B

>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xcr_B* 2xcq_A* 2xco_A*
Probab=100.00  E-value=0  Score=1178.69  Aligned_cols=488  Identities=53%  Similarity=0.843  Sum_probs=479.9

Q ss_pred             CCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCCCC
Q ss_conf             76432356660099999876787779988631375400089736789999999878999998113404255664366887
Q gi|254780182|r    9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH   88 (910)
Q Consensus         9 ~~~~~~~i~~~~~~~~m~~syl~Ya~svI~~RAlPd~rDGlKpv~Rrily~m~~~~~~~~~~~~K~a~ivg~v~gkyHPH   88 (910)
                      ..-.+.++...+++++|.++|++||||||.+|||||++||||||||||||||+++++.++++|+|||++||+|+|+||||
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Raip~~~DGlKp~qRkil~~~~~~~~~~~~~~~k~a~~~g~v~~~~~~H  282 (692)
T 2xcs_B          203 AELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGKYHPH  282 (692)
T ss_dssp             ---------EEEHHHHHHHHHHHHHHHHHHHTSSCBTTTCCCHHHHHHHHHHHHTTCCTTSCCEEHHHHHHHHHHHTCCS
T ss_pred             HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHCCCC
T ss_conf             53461035534189988899999999887740475142176578999999999856788887676316589888650888


Q ss_pred             CHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEECC
Q ss_conf             04789999997122011156131478870887769720135789997899999986307684053306898854850343
Q gi|254780182|r   89 GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC  168 (910)
Q Consensus        89 Gd~siy~a~v~maq~~~~r~plidg~GnfGs~dgd~~AA~RYte~rl~~~~~~~l~~i~~~tv~~~~n~D~~~~EP~vlP  168 (910)
                      ||+|+|+|+|+|||+|++|+||++|||||||++||+|||||||||||++++..|+.++++++|+|.+||||+..||+++|
T Consensus       283 Ge~sl~~tiv~maq~~~~n~~ll~~~G~fGs~~g~~~aa~RYi~~~l~~~~~~~~~~~~~~~~~~~~~~dg~~~EP~~~~  362 (692)
T 2xcs_B          283 GDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRFTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLP  362 (692)
T ss_dssp             CHHHHHHHHHHHHCTTTCSSCSEEEESCCCCTTCCCCCCTTTCEEEECHHHHHHHTTTTTTCSCEEECTTSSCEEESSCC
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCC
T ss_conf             56778788999864352166530015887899999630021687751776887642236535655530255546874478


Q ss_pred             CCCCCCHHCCCCCEEEHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCEE
Q ss_conf             22732110167610101331789854789999998876187768888886345866887443447588999987012038
Q gi|254780182|r  169 ARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI  248 (910)
Q Consensus       169 ~~~P~lL~nG~~GIAvGmaTnippHNl~Ev~~a~~~~i~~p~~~~~eL~~~i~GPDFPTGG~I~~~~~i~~~y~tGrG~i  248 (910)
                      +.+|++||||++||||||||||||||+.|||+|++++|++|+++.++||+++|||||||||.|.|.+|+.++|.||||++
T Consensus       363 p~iP~~LvNG~~GIgtG~sT~IP~hNp~eVi~~i~~~l~~~~~~~~el~~~i~gPdfPtgg~i~g~~g~~~~y~tGrg~~  442 (692)
T 2xcs_B          363 ARFPNLLANGASGIAVGMATNIPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSI  442 (692)
T ss_dssp             CSSCHHHHHCEEEECSSCEEEECCBCHHHHHHHHHHHHTCTTCCHHHHTTTCCSBCCTTCCEEECSHHHHHHHHHSEEEE
T ss_pred             CCCCHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCEEECCCCEEEHHCCCCCCE
T ss_conf             65638887368752267631567889899999999985498535899984288898998765877754000221787515


Q ss_pred             EEEEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCC-CCCEEEEEEECCCCCHHHHHHHH
Q ss_conf             99998865433678459999246443528999999999987166501445873037-46557999947988778999999
Q gi|254780182|r  249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQL  327 (910)
Q Consensus       249 ~iR~k~~ie~~~~~k~~ivItEiPY~vnk~~lie~Ia~lv~~~ki~gI~dirDeSd-r~giRivielKr~~~~~~vln~L  327 (910)
                      ++|+++++++.++|+++|+||||||++++++++|+|++++++||+++|+|++|||+ +.|+||||++|++.+++.++++|
T Consensus       443 ~~~~~~~~~~~~~~k~~I~ITELP~g~wt~~yke~L~~lv~~kki~~i~d~~des~~~~~vrivi~~k~~~~~~~~~~~L  522 (692)
T 2xcs_B          443 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVRKDANASVILNNL  522 (692)
T ss_dssp             EEECEEEEEEEETTEEEEEEEECCTTCCHHHHHHHHHHHHHTTCSCCEEEEEECCBTTTBSCEEEEECTTSCHHHHHHHH
T ss_pred             EEEEEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCEEEEEEEECCCCCHHHHHHHH
T ss_conf             89999999994499659999825887778999999999997599776055114566652179999826887889999878


Q ss_pred             HHHCCHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             97610110000002455416630002999999999999999999999999999888778999999874069999998618
Q gi|254780182|r  328 YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS  407 (910)
Q Consensus       328 yk~T~Lq~sf~~N~~aL~~g~P~~l~Lk~iL~~fi~hR~evi~rRt~~~L~ka~~R~HILeGL~~Al~nIDeVI~iIR~S  407 (910)
                      |++|+||+||++||++|++|+|+++++.+||++|++||.++++||.+|+|+++++|+|||+|+++|+++||+||++||+|
T Consensus       523 ~k~tkL~tsis~N~~~l~dg~pk~~~~~eIL~~f~~~Rle~y~KRkey~L~kle~rl~iLegl~~~i~~ID~vIkiIr~s  602 (692)
T 2xcs_B          523 YKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRES  602 (692)
T ss_dssp             HHHSTTEEEEEEECEEEETTEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTC
T ss_pred             HHHCCCEEEECCEEEEEECCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             87577322102069999889368932599999999999999999999999999999999980999998499999999829


Q ss_pred             CCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99789878776312697889999974022111222344523699999999987899998887999999899999999988
Q gi|254780182|r  408 PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC  487 (910)
Q Consensus       408 ~d~~eAk~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~lSe~QA~AILdMrL~rLt~LE~~kl~~E~~eL~~~I~~l  487 (910)
                      +++++|+..|+++                          |++|+.||+|||+|||++||++|++||++|+++|.++|++|
T Consensus       603 k~~~~a~~~L~~~--------------------------f~lse~QadyLL~M~L~~LT~eeieKL~~E~~el~~ei~eL  656 (692)
T 2xcs_B          603 DTDKVAMESLQQR--------------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISEL  656 (692)
T ss_dssp             SSHHHHHHHHHHH--------------------------HTCCHHHHHHHHTCBGGGGSTTHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH--------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9989999999986--------------------------59999999999970999975779999999999999999999


Q ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEC
Q ss_conf             75304989999999998999998405688331001
Q gi|254780182|r  488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE  522 (910)
Q Consensus       488 ~~IL~s~~~l~~iI~~EL~eik~kygd~RRT~I~~  522 (910)
                      ++||+|++.+|+++++||.+++++||++|||+|.+
T Consensus       657 ~~iL~s~~~l~~~i~~EL~~lkkky~~~RRT~Ie~  691 (692)
T 2xcs_B          657 ETILADEEVLLQLVRDELTEIRDRFGDDRRTEIQL  691 (692)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHCCCCCSEEEC
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             99868999999999999999999828987862158