HHsearch results for GI: 254780182 and protein with PDBid: 3ilw_A
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} PDB: 3ifz_A*
Probab=100.00 E-value=0 Score=1180.31 Aligned_cols=464 Identities=48% Similarity=0.809 Sum_probs=455.5
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHCCCCCCC
Q ss_conf 79988631375400089736789999999878999998113404255664366887047899999971220111561314
Q gi|254780182|r 33 AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112 (910)
Q Consensus 33 a~svI~~RAlPd~rDGlKpv~Rrily~m~~~~~~~~~~~~K~a~ivg~v~gkyHPHGd~siy~a~v~maq~~~~r~plid 112 (910)
.-|||++|||||++||||||||||||||+++++.++.++.|||++||+|||+||||||+|+|+|||+|||+||+|+||++
T Consensus 2 ~~svi~~RaiP~~~DGLKp~qRkil~~~~~~~l~~~~k~~k~a~~v~e~~~~YHpHGe~Sl~~tiv~mAQ~fsnn~~Ll~ 81 (470)
T 3ilw_A 2 NASVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDSLVRMAQPWSLRYPLVD 81 (470)
T ss_dssp -----CTTTSCBTTTCCCHHHHHHHHHHHHHTCCTTSCCEEHHHHHHHHHHHTCCCCSTHHHHHHHHHHCTTTCSSCSEE
T ss_pred CCCEEHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 86312004477521388589999999999728988986101156899750146888688999999998561020463414
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEECCCCCCCCHHCCCCCEEEHHHHCCCC
Q ss_conf 78870887769720135789997899999986307684053306898854850343227321101676101013317898
Q gi|254780182|r 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 (910)
Q Consensus 113 g~GnfGs~dgd~~AA~RYte~rl~~~~~~~l~~i~~~tv~~~~n~D~~~~EP~vlP~~~P~lL~nG~~GIAvGmaTnipp 192 (910)
|||||||++||+||||||||||||++|..||.++|.++|+|.|||||+..||++||+.+|++||||++||||||||||||
T Consensus 82 ~~G~FGs~~g~~aAa~RYi~t~Ls~~~~~if~~~d~~~l~~~~n~Dg~~~EP~~y~piiP~vLvNG~~GIgtG~sT~IP~ 161 (470)
T 3ilw_A 82 GQGNFGSPGNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPP 161 (470)
T ss_dssp EESCCCCSSSCCCCCTTSCEEEECHHHHHHHTTGGGTCSCEEECTTSSSEEESSCCCSSCHHHHHCEECSSTTCSCEECC
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEEEECCCCCC
T ss_conf 78999999999764413688744189999973432041046756578645872016436299863777525300036776
Q ss_pred CCHHHHHHHHHHHHHCCCCCHHH----HHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEEEEEECCCCCEEEEE
Q ss_conf 54789999998876187768888----88634586688744344758899998701203899998865433678459999
Q gi|254780182|r 193 HNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268 (910)
Q Consensus 193 HNl~Ev~~a~~~~i~~p~~~~~e----L~~~i~GPDFPTGG~I~~~~~i~~~y~tGrG~i~iR~k~~ie~~~~~k~~ivI 268 (910)
||+.|||+||+++|++|+++..+ +|++++||||||||.|.|..|+.++|+||+|++++|++|++|+...|+|+|+|
T Consensus 162 ~Np~evi~~~~~~l~~~~~~~~~~~~~~~~~~~gPdfp~g~~i~g~~~~~~~y~~G~g~~~~~~~~~iee~~~gk~~i~I 241 (470)
T 3ilw_A 162 HNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQGTADAYKTGRGSIRMRGVVEVEEDSRGRTSLVI 241 (470)
T ss_dssp CCHHHHHHHHHHHHHTTTCCHHHHHHHHHHHCCSCCCTTCCEEECSHHHHHHHHHSEEEEEEECEEEEEECTTCCEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCEEECCCCHHHHHHCCCCEEEEEEEEEEEECCCCCEEEEE
T ss_conf 01567999999986477421035589986157789989876676662446674259824999879999975798258999
Q ss_pred ECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH-CCCCCEEEEEEECCCCCHHHHHHHHHHHCCHHCCCCCEEEEEECC
Q ss_conf 2464435289999999999871665014458730-374655799994798877899999997610110000002455416
Q gi|254780182|r 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY 347 (910)
Q Consensus 269 tEiPY~vnk~~lie~Ia~lv~~~ki~gI~dirDe-Sdr~giRivielKr~~~~~~vln~Lyk~T~Lq~sf~~N~~aL~~g 347 (910)
|||||++++++++++|++++.+||+++|+|++|+ |++.|+||||++|++++++.++++|||+|+||+||++||+||.||
T Consensus 242 tElP~~~~~~~~~e~i~~~~~~kk~~~i~di~de~s~~~~vrivI~lk~~~~~~~~~~~L~k~tkL~ts~s~n~~~l~d~ 321 (470)
T 3ilw_A 242 TELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDG 321 (470)
T ss_dssp EECCTTCCHHHHHHHHHHHHHTTSCTTEEEEEECCBTTTBCCEEEEECTTSCHHHHHHHHHHHSTTEEEEEEECEEEETT
T ss_pred EEECCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCEEEEECCEEEEEECC
T ss_conf 86214454889999999997568867734302034777654899852687778999999998558066650369999899
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHH
Q ss_conf 63000299999999999999999999999999988877899999987406999999861899789878776312697889
Q gi|254780182|r 348 KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 (910)
Q Consensus 348 ~P~~l~Lk~iL~~fi~hR~evi~rRt~~~L~ka~~R~HILeGL~~Al~nIDeVI~iIR~S~d~~eAk~~L~~~~~~~~~~ 427 (910)
+|+.+++++||++|++||.++++||.+|+|+++++|+|+|+|+++++.+||++|.+||+|++.++|++.|++.
T Consensus 322 ~pk~~~~~eIL~~f~~~R~~~y~kR~~~~L~k~~~rl~il~~~~~~i~~id~~i~iir~s~~~~~~k~~l~k~------- 394 (470)
T 3ilw_A 322 VPRTLRLDQLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARAGLIEL------- 394 (470)
T ss_dssp EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHCSSHHHHHHHHHHH-------
T ss_pred EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-------
T ss_conf 7147379999999999999999999999999999999999759999970277788887158889999987774-------
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 99997402211122234452369999999998789999888799999989999999998875304989999999998999
Q gi|254780182|r 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLS 507 (910)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~f~lSe~QA~AILdMrL~rLt~LE~~kl~~E~~eL~~~I~~l~~IL~s~~~l~~iI~~EL~e 507 (910)
|+||+.||++||+|||++||++|+++|++|+++|.+++++|++||+|++.+|+++++||.+
T Consensus 395 -------------------~~lse~qadyLL~M~L~~LT~ee~~kL~~E~~~l~~ei~~L~~il~~~~~l~~~i~~EL~~ 455 (470)
T 3ilw_A 395 -------------------LDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDELAE 455 (470)
T ss_dssp -------------------HTCCHHHHHHHHTCBGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred -------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf -------------------3999999999985199987168899999999999999999999968999999999999999
Q ss_pred HHHHCCCCCCCEEEC
Q ss_conf 998405688331001
Q gi|254780182|r 508 VKDELDTPRRTRIVE 522 (910)
Q Consensus 508 ik~kygd~RRT~I~~ 522 (910)
++++||+||||+|+.
T Consensus 456 l~~k~~~~RrT~I~~ 470 (470)
T 3ilw_A 456 IVDRHGDDRRTRIIA 470 (470)
T ss_dssp HHHHHCCCCCSEEEC
T ss_pred HHHHHCCCCCCCCCC
T ss_conf 999828987884379