Query         gi|254780182|ref|YP_003064595.1| DNA gyrase subunit A [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 910
No_of_seqs    225 out of 2407
Neff          5.8 
Searched_HMMs 23785
Date          Mon May 23 08:07:00 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780182.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1zvu_A Topoisomerase IV subuni 100.0       0       0 1748.2  51.6  692   38-834     1-707 (716)
  2 2wl2_A GYRA, DNA gyrase subuni 100.0       0       0 1320.0  38.2  510   13-522     4-522 (522)
  3 2inr_A DNA topoisomerase 4 sub 100.0       0       0 1261.0  32.5  491   11-527    23-513 (514)
  4 2xcs_B DNA gyrase subunit B, D 100.0       0       0 1178.7  40.8  488    9-522   203-691 (692)
  5 3ilw_A DNA gyrase subunit A; D 100.0       0       0 1180.3  37.5  464   33-522     2-470 (470)
  6 2nov_A DNA topoisomerase 4 sub 100.0       0       0 1188.5  27.9  489   14-528     2-490 (496)
  7 2xkj_E Topoisomerase IV; type  100.0       0       0 1112.1  41.1  495    9-537   266-767 (767)
  8 3l4j_A DNA topoisomerase 2; to 100.0       0       0  922.3  20.1  484    7-516   238-757 (757)
  9 3l6v_A GYRA, DNA gyrase subuni 100.0       0       0  624.8  32.7  354  531-908     2-355 (370)
 10 1zi0_A DNA gyrase subunit A; b 100.0       0       0  600.5  30.4  307  534-899     1-307 (307)
 11 1suu_A DNA gyrase subunit A; t 100.0       0       0  595.7  32.3  312  529-899     1-312 (312)
 12 1wp5_A Topoisomerase IV; broke 100.0       0       0  593.7  28.6  314  532-907     1-315 (323)
 13 1zvt_A Topoisomerase IV subuni 100.0 2.3E-34 9.6E-39  324.7  18.9  189  536-742     2-197 (256)
 14 3ku8_A GYRA14, DNA gyrase subu 100.0 1.6E-29 6.5E-34  281.4   8.5  139  358-496    10-156 (156)
 15 3l6v_A GYRA, DNA gyrase subuni  99.9 2.3E-22 9.5E-27  217.3  25.4  205  535-745   112-348 (370)
 16 1wp5_A Topoisomerase IV; broke  99.9 9.6E-22   4E-26  211.7  24.4  196  537-742   107-306 (323)
 17 1suu_A DNA gyrase subunit A; t  99.9 2.7E-22 1.2E-26  216.6  21.6   40  674-713    39-78  (312)
 18 1zi0_A DNA gyrase subunit A; b  99.9 4.2E-22 1.8E-26  214.9  21.9  189  539-739   112-303 (307)
 19 1zvt_A Topoisomerase IV subuni  99.8 4.4E-17 1.9E-21  170.0  15.8  188  648-901     5-200 (256)
 20 1zvu_A Topoisomerase IV subuni  99.7 5.3E-17 2.2E-21  169.2  13.4  234  586-892   472-712 (716)
 21 3l4j_A DNA topoisomerase 2; to  93.5    0.47   2E-05   26.6  11.2   34   85-121    26-62  (757)
 22 1wle_A Seryl-tRNA synthetase;   80.7     2.5 0.00011   20.0   9.7   24  718-743   319-342 (501)
 23 3lss_A Seryl-tRNA synthetase;   80.4     2.6 0.00011   19.9   7.9   47  459-512    95-141 (484)
 24 2q6t_A DNAB replication FORK h  79.3     2.3 9.7E-05   20.4   4.4   17  499-515   339-355 (444)
 25 3cnf_A VP1; cytoplasmic polyhe  77.8     2.1 8.8E-05   20.7   3.9   81  649-739  1177-1258(1333)
 26 1t3j_A Mitofusin 1; coiled coi  73.9     3.7 0.00015   18.6   7.0   52  461-512    40-94  (96)
 27 2vld_A NUCS, UPF0286 protein p  67.7     4.8  0.0002   17.5   3.8   34  678-711   141-176 (251)
 28 2r6a_A DNAB helicase, replicat  66.8       5 0.00021   17.4   4.4   20  266-286   206-225 (454)
 29 2dq3_A Seryl-tRNA synthetase;   66.5     5.1 0.00021   17.3   9.0   84  401-512     4-91  (425)
 30 2ayu_A Nucleosome assembly pro  54.8     3.8 0.00016   18.5   1.3   64  460-523    72-141 (417)
 31 3h3m_A Flagellar protein FLIT;  51.1     8.5 0.00036   15.3   4.2   41  480-520    74-114 (126)
 32 3gc3_B Arrestin beta-1, clathr  49.4       9 0.00038   15.1  10.3   66  795-871   268-333 (363)
 33 1b4u_A LIGA, LIGB, protocatech  47.6     9.5  0.0004   14.9   3.0   25  447-471    64-88  (139)
 34 2qzb_A Uncharacterized protein  46.9     2.4 9.9E-05   20.3  -0.8   54  567-621    47-104 (166)
 35 1io1_A Phase 1 flagellin; beta  46.6     9.8 0.00041   14.7   6.3   61  387-488     5-74  (398)
 36 1ses_A Seryl-tRNA synthetase;   46.0      10 0.00042   14.7   9.7   55  401-486     4-60  (421)
 37 1fxl_A Paraneoplastic encephal  45.0      10 0.00043   14.5   5.6   60  264-326    89-149 (167)
 38 1ik9_A DNA repair protein XRCC  43.3      11 0.00045   14.4   6.8   24  485-508   178-201 (213)
 39 3oc4_A Oxidoreductase, pyridin  42.5      11 0.00047   14.3   2.6   20  725-744   372-391 (452)
 40 3nkz_A Flagellar protein FLIT;  41.8      11 0.00048   14.2   4.2   57  481-537    65-122 (123)
 41 1b79_A DNAB helicase; hexamer,  40.9      12 0.00049   14.1   3.3   36  189-225    15-50  (119)
 42 3fv6_A YQZB protein; CBS domai  40.1     8.2 0.00034   15.4   1.1   39   78-118    19-60  (159)
 43 2ob9_A Tail assembly chaperone  37.5      13 0.00054   13.7   1.9   29   47-75     99-127 (130)
 44 3glc_A Aldolase LSRF; TIM barr  37.3      13 0.00055   13.6   3.5   22  397-418   270-291 (295)
 45 3fxd_A Protein ICMQ; helix bun  36.8      13 0.00053   13.7   1.7   45  448-514     4-48  (57)
 46 2dq0_A Seryl-tRNA synthetase;   36.7      13 0.00056   13.6  11.0   85  401-512     4-92  (455)
 47 1q8y_A SR protein kinase; tran  36.3     3.3 0.00014   19.0  -1.4   30   81-120     3-35  (373)
 48 1ldd_A APC2WHB, anaphase promo  36.1      13 0.00057   13.5   1.9   36  184-219    14-53  (74)
 49 2o16_A Acetoin utilization pro  36.1     9.8 0.00041   14.7   1.0   29   89-117    20-48  (160)
 50 3ol2_B Plexin-B1; beta-propell  35.7      14 0.00058   13.4   6.2   25  844-868   394-418 (528)
 51 1m1j_C Fibrinogen gamma chain;  34.3      14  0.0006   13.3  12.0   48  469-516    92-139 (409)
 52 3bzq_A Nitrogen regulatory pro  33.9      14 0.00061   13.2   3.6   78  190-293    10-88  (114)
 53 3a7m_A Flagellar protein FLIT;  33.8      15 0.00061   13.2   3.8   57  481-537    62-119 (122)
 54 1xi4_A Clathrin heavy chain; a  33.8      15 0.00061   13.2  10.3   20  848-867   925-944 (1630)
 55 3ghg_C Fibrinogen gamma chain;  33.4      15 0.00062   13.2  10.9   50  468-517    91-140 (411)
 56 1wak_A Serine/threonine-protei  31.7     4.5 0.00019   17.7  -1.3   18  209-226    11-28  (397)
 57 1fzc_C Fibrin; blood coagulati  31.3      16 0.00066   12.9   1.7   34  479-512    15-48  (319)
 58 1muk_A Minor core protein lamb  31.3      13 0.00053   13.8   0.9  129  236-375   281-443 (1267)
 59 3kjx_A Transcriptional regulat  31.2      16 0.00066   12.9   3.6   81   20-104    12-97  (344)
 60 3iq1_A DPS family protein; csg  30.3     6.8 0.00029   16.2  -0.6   17  393-409    63-79  (159)
 61 1bpo_A Protein (clathrin); cla  30.1      16 0.00069   12.7  11.9   66  795-871   268-333 (494)
 62 1deq_A Fibrinogen (alpha chain  30.1      16 0.00069   12.7  14.3   12  349-360    49-60  (390)
 63 3lay_A Zinc resistance-associa  29.9      16 0.00069   12.7   7.1   65  447-516    66-133 (175)
 64 2khd_A Uncharacterized protein  28.0      15 0.00062   13.2   0.8   25  446-470    79-103 (108)
 65 1q47_A Semaphorin 3A; beta pro  27.9      18 0.00074   12.4   7.9   11  705-715   315-325 (495)
 66 2cdu_A NADPH oxidase; flavoenz  27.7      18 0.00075   12.4   4.6   19  725-743   377-395 (452)
 67 2nyc_A Nuclear protein SNF4; b  27.5      18 0.00075   12.4   1.2   29   88-116    25-53  (144)
 68 3dm8_A Uncharacterized protein  27.2      18 0.00076   12.3   7.5   56  192-249     3-68  (143)
 69 2jo8_A Serine/threonine-protei  27.1      16 0.00065   12.9   0.8   22  497-518    22-43  (51)
 70 1o50_A CBS domain-containing p  26.8      13 0.00056   13.6   0.4   42   78-120    18-63  (157)
 71 1l1q_A Adenine phosphoribosylt  26.5      16 0.00068   12.8   0.8   10  262-271   117-126 (186)
 72 1y5h_A Hypothetical protein RV  26.3      14 0.00059   13.4   0.5   43   78-120    10-55  (133)
 73 1itu_A Renal dipeptidase; glyc  25.9      19  0.0008   12.2   6.2   13  102-114     8-20  (369)
 74 3kpb_A Uncharacterized protein  25.8      19  0.0008   12.2   1.7   44   77-121     2-49  (122)
 75 1tvf_A PBP4, penicillin bindin  25.5      19 0.00081   12.1   3.2   11  350-360   110-120 (369)
 76 3lqn_A CBS domain protein; csg  25.2      19 0.00082   12.1   1.5   43   78-120    17-64  (150)
 77 2pi2_E Replication protein A 1  25.1      20 0.00082   12.1   1.7   15  695-709    61-75  (142)
 78 2hsg_A Glucose-resistance amyl  24.6      20 0.00083   12.0   1.0   84   21-108     5-93  (332)
 79 2hgl_A HNRPF protein, heteroge  24.1      18 0.00075   12.4   0.6   58  262-324    43-105 (136)
 80 1lwu_C Fibrinogen gamma chain;  23.9      20 0.00086   11.9   7.2   42  473-514    17-58  (323)
 81 2kz5_A Transcription factor NF  23.9      20 0.00086   11.9   4.0   18  447-464    55-72  (91)
 82 1jid_A Signal recognition part  23.3      21 0.00088   11.8   1.6   86  178-290    29-114 (128)
 83 2r60_A Glycosyl transferase, g  23.0      21 0.00089   11.7   1.9   16  107-122     9-24  (499)
 84 1fec_A Trypanothione reductase  22.6      22  0.0009   11.7   3.5   18  725-742   413-430 (490)
 85 2ckz_A DNA-directed RNA polyme  22.5      15 0.00062   13.1   0.0   13  448-460   144-156 (161)
 86 3l4f_A RHO guanine nucleotide   22.3      22 0.00091   11.6   5.0   47  471-517    10-56  (61)
 87 2nuw_A 2-keto-3-deoxygluconate  22.2      22 0.00092   11.6   2.0   27  461-487   260-286 (288)
 88 1yc1_A HSP 86, heat shock prot  22.1      22 0.00092   11.6   3.6   34  307-341   211-248 (264)
 89 2db1_A Heterogeneous nuclear r  22.0      21 0.00086   11.9   0.6   57  262-323    16-77  (118)
 90 1wlq_A Geminin; coiled-coil; 2  21.9      22 0.00093   11.6   5.1   34  469-502    46-79  (83)
 91 1vr9_A CBS domain protein/ACT   21.8      21  0.0009   11.7   0.7   44   78-121    15-61  (213)
 92 2f6r_A COA synthase, bifunctio  21.8      22 0.00093   11.6   3.1   14  448-461   222-235 (281)
 93 1zn8_A APRT, adenine phosphori  21.8      19 0.00081   12.1   0.5   10  489-498    31-40  (180)
 94 3khp_A MAOC family protein; de  21.6       3 0.00013   19.3  -3.7   11  164-175    71-81  (311)
 95 2gxf_A Hypothetical protein YY  21.5      22 0.00094   11.5   3.1   47  195-244     5-55  (142)
 96 3f40_A Uncharacterized NTF2-li  21.2      23 0.00096   11.5   5.1   23  185-210     1-23  (114)
 97 3ctp_A Periplasmic binding pro  21.2      18 0.00075   12.4   0.2   70   37-107    18-92  (330)
 98 1zbt_A RF-1, peptide chain rel  21.2      23 0.00096   11.5   4.8   49  465-513    52-104 (371)
 99 1b8x_A Protein (AML-1B); nucle  21.1      23 0.00096   11.5   1.9   12  505-516   185-196 (280)
100 1yav_A Hypothetical protein BS  21.0      21 0.00086   11.9   0.5   43   78-120    16-63  (159)
101 3ebt_A Uncharacterized NTF2-li  20.9      23 0.00097   11.4   6.8   56  185-248     1-66  (132)
102 3bq9_A Predicted rossmann fold  20.9      23 0.00097   11.4   1.0   83  446-546   369-454 (460)
103 2gek_A Phosphatidylinositol ma  20.8      23 0.00097   11.4   1.8   11  397-407   273-283 (406)
104 1uyl_A HSP 86, heat shock prot  20.7      23 0.00098   11.4   3.6   31  590-623   161-191 (236)
105 3al0_B Aspartyl/glutamyl-tRNA(  20.5      23 0.00099   11.3   5.1   14  216-229   155-168 (482)
106 3fhm_A Uncharacterized protein  20.3      24 0.00099   11.3   1.0   48   73-120    21-74  (165)
107 3nfi_A DNA-directed RNA polyme  20.1      22 0.00094   11.5   0.5   14  183-196    15-28  (237)
108 3fvh_A Serine/threonine-protei  20.0      24   0.001   11.3   1.1   28  581-608    77-104 (237)

No 1  
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA binding, DNA topology; 3.00A {Escherichia coli}
Probab=100.00  E-value=0  Score=1748.20  Aligned_cols=692  Identities=34%  Similarity=0.549  Sum_probs=652.6

Q ss_pred             HHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHCCCCCCCCCCCC
Q ss_conf             63137540008973678999999987899999811340425566436688704789999997122011156131478870
Q gi|254780182|r   38 LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF  117 (910)
Q Consensus        38 ~~RAlPd~rDGlKpv~Rrily~m~~~~~~~~~~~~K~a~ivg~v~gkyHPHGd~siy~a~v~maq~~~~r~plidg~Gnf  117 (910)
                      .+|||||+|||||||||||||||+++|++++++|+||||+||+||||||||||+|+|||||||||+|+|||||+||||||
T Consensus         1 l~RalP~~~DGlKpvqRril~~m~~~~~~~~~~~~k~a~~vg~v~g~yhpHGd~s~~~a~v~maq~~~~~~pl~~~~Gnf   80 (716)
T 1zvu_A            1 MDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNW   80 (716)
T ss_dssp             -CCCCCBTTTCCCHHHHHHHHHHSTTCC----------CCHHHHHTTTSCTTCHHHHHHHHHHTSTTSCSSCSEEECSCC
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCC
T ss_conf             98778972238857888999999862898999854435479887418889759999999999835323046216478987


Q ss_pred             CCCCCCC-CCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEECCCCCCCCHHCCCCCEEEHHHHCCCCCCHH
Q ss_conf             8877697-201357899978999999863076840533068988548503432273211016761010133178985478
Q gi|254780182|r  118 GSVDGDP-PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG  196 (910)
Q Consensus       118 Gs~dgd~-~AA~RYte~rl~~~~~~~l~~i~~~tv~~~~n~D~~~~EP~vlP~~~P~lL~nG~~GIAvGmaTnippHNl~  196 (910)
                      ||+||++ ||||||||||||+++++||.|+|++||+|+|||||+++||+|||++|||||||||+|||||||||||||||+
T Consensus        81 Gs~~~~~~~Aa~RY~e~rls~~~~~~~~~~~~~~~~~~~n~Dg~~~EP~~lp~~~P~lLvNG~~GIavG~aT~IpphNl~  160 (716)
T 1zvu_A           81 GAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR  160 (716)
T ss_dssp             SSSSSCCCTTSSCGGGEEECGGGHHHHTTTTSSCSCEEECTTSSSEEESSCCCSSCHHHHHCCCSCCSSCSCBCCCBCHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHCCCCCCHH
T ss_conf             89999965465667873557999998764065744766388987458730266564776357765456765277663368


Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCC-HHHHHHHHHHCCCEEEEEEEEEEEECCCCCEEEEEECCCCCC
Q ss_conf             9999998876187768888886345866887443447-588999987012038999988654336784599992464435
Q gi|254780182|r  197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV  275 (910)
Q Consensus       197 Ev~~a~~~~i~~p~~~~~eL~~~i~GPDFPTGG~I~~-~~~i~~~y~tGrG~i~iR~k~~ie~~~~~k~~ivItEiPY~v  275 (910)
                      ||++||+++|++|++++++||++||||||||||+|++ .++|.++|+||||+|++||+|++|+     ++||||||||||
T Consensus       161 ev~~a~~~~i~~~~~~~~~l~~~i~gPdfptgg~i~~~~~~i~~~y~tG~G~i~~r~~~~~e~-----~~ivItEiPy~~  235 (716)
T 1zvu_A          161 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED-----GAVVISALPHQV  235 (716)
T ss_dssp             HHHHHHHHHHHCTTCCHHHHTTTCCSBCCSSSSEECSCTTHHHHHHHHTEEEEEEECEEEEET-----TEEEEEECCTTC
T ss_pred             HHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCEEECCHHHHHHHHHCCCEEEEEEEEEECCC-----CEEEEEECCCCC
T ss_conf             888778998629987889996137789989856697684888876526985999999982448-----749999788545


Q ss_pred             CHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEE--EEECCCCCHHHHHHHHHHHCCHHCCCCCEEEEE-ECCCCCCC
Q ss_conf             289999999999871665014458730374655799--994798877899999997610110000002455-41663000
Q gi|254780182|r  276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV--IELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERF  352 (910)
Q Consensus       276 nk~~lie~Ia~lv~~~ki~gI~dirDeSdr~giRiv--ielKr~~~~~~vln~Lyk~T~Lq~sf~~N~~aL-~~g~P~~l  352 (910)
                      ||++++|+|++++++||++||+|+|||||++|+|+|  ++.+++++++.|||+|||+|+||+||++||+++ ++|+|+++
T Consensus       236 ~~~~lie~i~~lv~~kki~~i~d~~DeSd~~~~~~vv~~~~~~~~~~e~vl~~Lyk~T~Lq~s~~~N~~~i~~~g~P~~~  315 (716)
T 1zvu_A          236 SGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVK  315 (716)
T ss_dssp             CHHHHHHHHHHHHHTTSCTTEEEEEECCCSSSTTCEEEEESSSSCCHHHHHHHHHHHSTTEEEEEEECEEECTTSCEEEC
T ss_pred             CHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCHHHHHCCCCEEEEEECCCCCCC
T ss_conf             67889999998876489662000111356667579995055568899999999998442344313045788309964505


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             29999999999999999999999999998887789999998740699999986189978987877631269788999997
Q gi|254780182|r  353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID  432 (910)
Q Consensus       353 ~Lk~iL~~fi~hR~evi~rRt~~~L~ka~~R~HILeGL~~Al~nIDeVI~iIR~S~d~~eAk~~L~~~~~~~~~~~~~~~  432 (910)
                      +|+++|++|++||++|++||++|+|+|+++|+||||||++|+.+||+||++||+|+++.   .+||++            
T Consensus       316 ~l~eiL~~f~~~R~evi~rR~~~~L~k~~~rl~ilegl~~a~~~iD~vI~iIr~s~~~~---~~l~~~------------  380 (716)
T 1zvu_A          316 NLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPK---PALMSR------------  380 (716)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSHH---HHHHHS------------
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH---HHHHHH------------
T ss_conf             79999999999999999999999999999999999829999983999999996588558---999985------------


Q ss_pred             HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             40221112223445236999999999878999988879999998999999999887530498999999999899999840
Q gi|254780182|r  433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL  512 (910)
Q Consensus       433 ~~~~~~~~~~~~~~f~lSe~QA~AILdMrL~rLt~LE~~kl~~E~~eL~~~I~~l~~IL~s~~~l~~iI~~EL~eik~ky  512 (910)
                                    |+|||.||+|||+|||||||+||++||++|+++|.++|++|++||+|+++++++|++||.+++++|
T Consensus       381 --------------f~~se~Qa~aIL~mrL~~Lt~le~~kl~~E~~~l~~~i~~l~~IL~s~~~l~~~I~~EL~elkkkf  446 (716)
T 1zvu_A          381 --------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY  446 (716)
T ss_dssp             --------------TTCCTTHHHHHHTCCGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf             --------------599989999999757878778889999999999999999997420488898999998999999971


Q ss_pred             CCCCCCEEECCC--CCCCCCCCCCCCCEEEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEECCCCEEE
Q ss_conf             568833100134--345301014567818999079705233100000233456521100014641010113323777399
Q gi|254780182|r  513 DTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL  590 (910)
Q Consensus       513 gd~RRT~I~~~~--~~i~~EdlI~~E~vvV~lS~~GyIKr~~~~~yr~Q~RggkG~~~~~~ke~D~v~~~~~~~t~d~LL  590 (910)
                      |++|||.|.+..  .+++.+++|++|+++|++|+.|||||++.++|+.|        +++++++|.+.+++.|+|||+|+
T Consensus       447 gd~RRT~i~~~~~~~~~~~edli~~e~v~V~ls~~GyIkr~~~~~~~~~--------~~~~k~~D~~~~~~~~~t~d~ll  518 (716)
T 1zvu_A          447 GDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAP--------GLNYKAGDSFKAAVKGKSNQPVV  518 (716)
T ss_dssp             CCCCCSCBCCCCCCCCCCSSTTSCCCCCCEEEETTTEEEECCC-----------------------CCEEECCCSSSCEE
T ss_pred             CCCCCCCCCCCCCCCCCCHHHHCCCCCEEEEECCCCEEEECCCCCCCCC--------CCCCCCCCCCEEEEEEECCCCEE
T ss_conf             8988742214532245788780767650688636876862367765544--------54232366534789971576406


Q ss_pred             EEECCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEECHHHHHHCCC
Q ss_conf             99548939998200043224445655412454536556200256630125666871799994799189842368620477
Q gi|254780182|r  591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR  670 (910)
Q Consensus       591 fFTs~Gkvy~l~v~~IP~~sr~skG~pi~nll~l~~~E~I~ail~~~~~~~~~~~~~Lvl~Tk~G~VKkt~l~ef~~~r~  670 (910)
                      |||+.||||++++|+||++  +++|.|+.|+++++++|+|++++++.      ++.+++|+|++|++||+++++|.+.++
T Consensus       519 ~fT~~Grvy~l~v~~lP~~--~~kG~pi~~~l~l~~~E~I~~i~~~~------~d~~lll~T~~G~~K~~~l~~~~~~~k  590 (716)
T 1zvu_A          519 FVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPPGATVDHMLMES------DDQKLLMASDAGYGFVCTFNDLVARNR  590 (716)
T ss_dssp             EEETTSEEEEECTTTSCCC--C---CBSTTTSCCCTTCCEEEEECCC------TTCEEEEEBTTSEEEEEEGGGGCCCST
T ss_pred             EECCCCCEEEEEEEECCCC--CCCCCCCCCCCCCCCCCEEEEEEECC------CCCEEEEEECCCCEEEEEHHHHCCCCC
T ss_conf             8835882799741457677--67886543410479998489987327------886799997589589985136105475


Q ss_pred             CCEEEEEECCCCEEEEEEECCC-CCEEEEEECCCEEEEEEHHHCCCCCCCCCCCEEEEECCC------CCEEEEEEEECC
Q ss_conf             7227866158985788896189-826999936985999758762354786655357675289------986999897336
Q gi|254780182|r  671 SGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK------GDQVISMAIVLH  743 (910)
Q Consensus       671 ~G~~aikLkegD~Li~v~~~~~-~~~Iil~T~~G~~lrF~~~evr~~~GR~a~GVkgIkL~~------~D~Vv~~~vi~~  743 (910)
                      +|+.||+|++||+|+.|..+++ +++|+++|++|++|||++++||+| || ++||+||+|++      +|.|+++.++++
T Consensus       591 ~Gk~aikLke~Deli~~~~~~~~~d~vl~vT~~Gk~lrF~~~ev~~~-gr-g~GVkgikL~~~~~~~~~d~v~~~~v~~~  668 (716)
T 1zvu_A          591 AGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQL-SK-GKGNKIINIPSAEAARGEDGLAQLYVLPP  668 (716)
T ss_dssp             TCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEESTTSCBC-SS-BSCEESSCCCHHHHHTTSSCEEEEEEECS
T ss_pred             CCCEEEEECCCCEEEEEEEECCCCCEEEEECCCCEEEEEEHHHCCCC-CC-CCCCCEEECCCCCCCCCCCEEEEEEEECC
T ss_conf             77377876899889989996599988999888982999788998865-75-47712073065555567855999999779


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCEEEEEHH-HCCCCCC
Q ss_conf             665420000012223333333455544444444333222223200111012568679999759934530178-8486675
Q gi|254780182|r  744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY-DFRISNR  822 (910)
Q Consensus       744 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~IL~vTe~G~GKRt~~~-eyr~q~R  822 (910)
                      .                                                     ..++++|++|++|+++.+ +|+.++|
T Consensus       669 ~-----------------------------------------------------~~llv~t~~g~~k~~~~~~~~~~~~R  695 (716)
T 1zvu_A          669 Q-----------------------------------------------------STLTIHVGKRKIKLRPEELQKVTGER  695 (716)
T ss_dssp             S-----------------------------------------------------CCEEEEETTEEEEECHHHHTTSBCCT
T ss_pred             C-----------------------------------------------------CEEEEEECCCEEEECHHHHHHHCCCC
T ss_conf             9-----------------------------------------------------86999988980785878830201787


Q ss_pred             CCCCEEEEECCC
Q ss_conf             774148876067
Q gi|254780182|r  823 SGKGIRATDVSK  834 (910)
Q Consensus       823 GgkGv~~ik~~~  834 (910)
                      ||+|++.+++.+
T Consensus       696 g~kG~~~~~~~k  707 (716)
T 1zvu_A          696 GRRGTLMRGLQR  707 (716)
T ss_dssp             TSCCEECTTCCS
T ss_pred             CCCCCCCCCCCC
T ss_conf             888879977766


No 2  
>2wl2_A GYRA, DNA gyrase subunit A; isomerase, aminocoumarin antibiotic, drug target, protein-ligand complex; HET: DNA SM8; 2.62A {Escherichia coli} PDB: 1ab4_A 1x75_A*
Probab=100.00  E-value=0  Score=1319.96  Aligned_cols=510  Identities=53%  Similarity=0.877  Sum_probs=493.6

Q ss_pred             CCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCCCCCHHH
Q ss_conf             23566600999998767877799886313754000897367899999998789999981134042556643668870478
Q gi|254780182|r   13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA   92 (910)
Q Consensus        13 ~~~i~~~~~~~~m~~syl~Ya~svI~~RAlPd~rDGlKpv~Rrily~m~~~~~~~~~~~~K~a~ivg~v~gkyHPHGd~s   92 (910)
                      .++|++++|+++|++|||+||||||++|||||+|||||||||||||||++++++++++|+|||++||+|||+||||||+|
T Consensus         4 ~~~~~~~~~~~~~~~~~l~Ya~~vi~~RaiP~~~DGlKP~qRkil~~~~~~~l~~~~~~~K~a~l~G~v~~~yHpHGe~s   83 (522)
T 2wl2_A            4 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSA   83 (522)
T ss_dssp             ------------------CHHHHHHHHHHCCBTTTCCCHHHHHHHHHHHHTTCCTTSCCEEHHHHHHHHHHHTCCSSCTH
T ss_pred             CCCCEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHCCCCCCHHH
T ss_conf             33454612899999999999999998513786224884889899999986278889884253102998874368886899


Q ss_pred             HHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEECCCCCC
Q ss_conf             99999971220111561314788708877697201357899978999999863076840533068988548503432273
Q gi|254780182|r   93 IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP  172 (910)
Q Consensus        93 iy~a~v~maq~~~~r~plidg~GnfGs~dgd~~AA~RYte~rl~~~~~~~l~~i~~~tv~~~~n~D~~~~EP~vlP~~~P  172 (910)
                      +|+|||||||+||+|+||++|||||||++||+||||||||||||++|..||.++|+++|+|+|||||+..||.|||+.||
T Consensus        84 l~~tiv~maQ~fs~n~~l~~~qg~fgs~~g~~~Aa~RYi~trLs~~~~~l~~~~d~~~l~~~~n~Dg~~~EP~~~pp~iP  163 (522)
T 2wl2_A           84 VYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIP  163 (522)
T ss_dssp             HHHHHHHTTCTTTCSSCSEEEESCBCCTTCCCBCCTTTCEEEECHHHHHHTTTTTSSCSCEEECTTSSSEEESSCCCSSC
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCC
T ss_conf             99999999664020470315889999999986432306888887999999862322543767388986316704513574


Q ss_pred             CCHHCCCCCEEEHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEE
Q ss_conf             21101676101013317898547899999988761877688888863458668874434475889999870120389999
Q gi|254780182|r  173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG  252 (910)
Q Consensus       173 ~lL~nG~~GIAvGmaTnippHNl~Ev~~a~~~~i~~p~~~~~eL~~~i~GPDFPTGG~I~~~~~i~~~y~tGrG~i~iR~  252 (910)
                      +||||||+||||||||||||||++|||+||+++|++|++++++||++||||||||||.+.|..|+.++|.||+|+|++||
T Consensus       164 ~vLvNGa~GIgtG~sT~IP~hNp~evi~~~~~~i~~~~~~~~~l~~~i~gPdfP~g~~~~g~~~~~~~~~~G~g~~~~r~  243 (522)
T 2wl2_A          164 NLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA  243 (522)
T ss_dssp             HHHHHCEECTTTTCCCEECCCCHHHHHHHHHHHHHCTTCCHHHHHHHCCSCCCTTCCEECCSHHHHHHHHHSEEEEEEEC
T ss_pred             HHHHCCCCCEEHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCEECCCCHHHHHHHCCCEEEEEEE
T ss_conf             89865786321343316899998999999999852765217889851889988876620176107888637970799998


Q ss_pred             EEEEEEC-CCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHC
Q ss_conf             8865433-678459999246443528999999999987166501445873037465579999479887789999999761
Q gi|254780182|r  253 VSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT  331 (910)
Q Consensus       253 k~~ie~~-~~~k~~ivItEiPY~vnk~~lie~Ia~lv~~~ki~gI~dirDeSdr~giRivielKr~~~~~~vln~Lyk~T  331 (910)
                      +|++|.. +.|+++|+||||||++++++++|+|++++++||+++|+|+||+||++|+|+||++|++++++.++++|||+|
T Consensus       244 ~~~ie~~~~~~~~~i~ITELP~~~~t~~~~e~i~~lv~~kki~~i~d~~d~s~~~~vr~vI~lk~~~~~~~~~~~L~k~t  323 (522)
T 2wl2_A          244 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQT  323 (522)
T ss_dssp             EEEEEECTTTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTSSCSEEEEEECCCSSCCCEEEEECTTSCHHHHHHHHHTTS
T ss_pred             EEEEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             89998314588547999826985779999999999997599775410113578876089996787678899999998643


Q ss_pred             CHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf             01100000024554166300029999999999999999999999999998887789999998740699999986189978
Q gi|254780182|r  332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE  411 (910)
Q Consensus       332 ~Lq~sf~~N~~aL~~g~P~~l~Lk~iL~~fi~hR~evi~rRt~~~L~ka~~R~HILeGL~~Al~nIDeVI~iIR~S~d~~  411 (910)
                      +||+||++||+++++|+|++++|++||++|++||.++++||++|+|+|+++|+|+|+|+++|+.+||++|++||+|++++
T Consensus       324 kL~ts~s~n~~~l~d~~pk~~sl~eIL~~f~~~R~e~~~kR~~~~L~kl~~rl~il~~~~~~i~~Id~ii~iir~sk~~~  403 (522)
T 2wl2_A          324 QLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPA  403 (522)
T ss_dssp             TTEEEEEEECEEEETTEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHCSSHH
T ss_pred             HHHHCCCCEEEEEECCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf             27620230389986896258329999999999999999999999999999999887608999983478899987068769


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHCCCCCCCCC--------CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9878776312697889999974022111222--------34452369999999998789999888799999989999999
Q gi|254780182|r  412 TARRELMQRSWNASDIKDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE  483 (910)
Q Consensus       412 eAk~~L~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~f~lSe~QA~AILdMrL~rLt~LE~~kl~~E~~eL~~~  483 (910)
                      +|+..|+++.|....................        ....|.||+.||+|||+|||+|||++|++||++|+++|.++
T Consensus       404 ~ak~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSe~QadyIL~M~L~~LT~~e~~KL~~E~~~l~~e  483 (522)
T 2wl2_A          404 EAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ  483 (522)
T ss_dssp             HHHHHHHHSCEECTTTHHHHC----CCCSCTTCCTTSEESSSEEECCHHHHHHHHHCBGGGGSTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99998764013430099999872242114310120005556765579999999996499997676599999999999999


Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEC
Q ss_conf             998875304989999999998999998405688331001
Q gi|254780182|r  484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE  522 (910)
Q Consensus       484 I~~l~~IL~s~~~l~~iI~~EL~eik~kygd~RRT~I~~  522 (910)
                      +++|++||+|++.+|++|++||.+++++||++|||+|..
T Consensus       484 i~eL~~iL~s~~~l~~~i~~EL~elk~ky~~~RrT~I~a  522 (522)
T 2wl2_A          484 IAELLRILGSADRLMEVIREELELVREQFGDKRRTEITA  522 (522)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHHHCCCCCSEEC-
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             999999968999999999999999999828987886149


No 3  
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=100.00  E-value=0  Score=1261.00  Aligned_cols=491  Identities=42%  Similarity=0.725  Sum_probs=482.9

Q ss_pred             CCCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCCCCCH
Q ss_conf             43235666009999987678777998863137540008973678999999987899999811340425566436688704
Q gi|254780182|r   11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGN   90 (910)
Q Consensus        11 ~~~~~i~~~~~~~~m~~syl~Ya~svI~~RAlPd~rDGlKpv~Rrily~m~~~~~~~~~~~~K~a~ivg~v~gkyHPHGd   90 (910)
                      +..+.|.+++|+++|+++|++||||||++|||||+|||||||||||||||++++++++++|+|||++||+|||+||||||
T Consensus        23 ~~~~~i~~~~~~~~~~~~~~~Ya~~vi~~RaiP~~~DGLKP~qRkIL~~~~~~~l~~~~~~~K~A~~vg~v~~~YHpHGe  102 (514)
T 2inr_A           23 EVSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGD  102 (514)
T ss_dssp             ------------------------------CCCBTTTCCCHHHHHHHHHHHHHTCCSSSCCEEHHHHHHHHHHHTCC---
T ss_pred             CCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHCCCCCH
T ss_conf             30264153449999999999878898773027742248848999999999970788898821007899998865379848


Q ss_pred             HHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEECCCC
Q ss_conf             78999999712201115613147887088776972013578999789999998630768405330689885485034322
Q gi|254780182|r   91 AAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR  170 (910)
Q Consensus        91 ~siy~a~v~maq~~~~r~plidg~GnfGs~dgd~~AA~RYte~rl~~~~~~~l~~i~~~tv~~~~n~D~~~~EP~vlP~~  170 (910)
                      +|+|+|||||||+|+++|||++|||||||++|++||||||||||||++|..||.++|+++|+|+|||||+..||+|||+.
T Consensus       103 ~Sl~~tiv~mAQ~f~~~~~L~~~~G~fGs~~~~~~Aa~RYi~trLs~~a~~if~~~d~~~l~~~~n~Dg~~~EP~~y~pi  182 (514)
T 2inr_A          103 SSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSR  182 (514)
T ss_dssp             CHHHHHHHHTTCTTTCSSCSEEEESCCCCTTCCCCCCTTTCEEEECTTHHHHSTTTTSSCSCEEECTTSSSEEESSCCCS
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCC
T ss_conf             89999999985540056535157899999999851147799988768999997643757426766889973177402576


Q ss_pred             CCCCHHCCCCCEEEHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEE
Q ss_conf             73211016761010133178985478999999887618776888888634586688744344758899998701203899
Q gi|254780182|r  171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI  250 (910)
Q Consensus       171 ~P~lL~nG~~GIAvGmaTnippHNl~Ev~~a~~~~i~~p~~~~~eL~~~i~GPDFPTGG~I~~~~~i~~~y~tGrG~i~i  250 (910)
                      ||+||||||+||||||||||||||+.|||+||+++|++|++++++||+++|||||||||+|.+.+|+.++|.||||+|++
T Consensus       183 iP~vLvNGs~GIgtG~sT~IPphNp~evi~~~~~~l~~~~~~~~el~~~~~GPdFptGg~I~~~~~~~~~y~~G~G~i~~  262 (514)
T 2inr_A          183 FPNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIV  262 (514)
T ss_dssp             SCHHHHHCEECC--CCCCEECCBCHHHHHHHHHHHHHCTTCCHHHHTTTCCSBCCTTCCEEECHHHHHHHHHHSEEEEEE
T ss_pred             CCHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCEEECCCHHHHHHHCCCEEEEE
T ss_conf             73898736776223200377998999999999999649999879996207799899984687761178886268369998


Q ss_pred             EEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf             99886543367845999924644352899999999998716650144587303746557999947988778999999976
Q gi|254780182|r  251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRY  330 (910)
Q Consensus       251 R~k~~ie~~~~~k~~ivItEiPY~vnk~~lie~Ia~lv~~~ki~gI~dirDeSdr~giRivielKr~~~~~~vln~Lyk~  330 (910)
                      ||++++|+.+.|+++|+||||||++++++++++|+++++++|+++|+|+||+||++|+||||++|++++++.+++.|||+
T Consensus       263 ~~~~~ie~~~~g~~~i~ItElP~~~~~~~~~~~i~~l~~~~ki~~i~d~~d~s~~~~i~ivi~~~~~~~~~~~~~~L~k~  342 (514)
T 2inr_A          263 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELKKDVNSESIKNYLYKN  342 (514)
T ss_dssp             ECEEEECC----CCEEEEEECCTTCCHHHHHHHHHHHHHHTSCC---CEEECCBTTBCCEEEEC------CHHHHHHTTS
T ss_pred             EEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHC
T ss_conf             44899997379826899984355456778999999998559878700303246887329999805762078888899850


Q ss_pred             CCHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf             10110000002455416630002999999999999999999999999999888778999999874069999998618997
Q gi|254780182|r  331 TSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP  410 (910)
Q Consensus       331 T~Lq~sf~~N~~aL~~g~P~~l~Lk~iL~~fi~hR~evi~rRt~~~L~ka~~R~HILeGL~~Al~nIDeVI~iIR~S~d~  410 (910)
                      |+||+||++||+++++++|+.+++.+||++|++||+++++||++|+|+++++|+|+++|++.++.++|++|++||+|+++
T Consensus       343 t~l~st~~~n~~~l~~~~pk~~~l~eIL~~f~~~R~~~y~kR~~~~L~k~e~rl~il~~~i~~i~~id~vi~iIr~sk~~  422 (514)
T 2inr_A          343 SDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNK  422 (514)
T ss_dssp             STTEEEEEEECEEEETTEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCCSH
T ss_pred             CCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHCCCCH
T ss_conf             63101222368983399146677899999999999999999999999999999977532312775422144422217998


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89878776312697889999974022111222344523699999999987899998887999999899999999988753
Q gi|254780182|r  411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI  490 (910)
Q Consensus       411 ~eAk~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~lSe~QA~AILdMrL~rLt~LE~~kl~~E~~eL~~~I~~l~~I  490 (910)
                      ++|+..|+++                          |+||+.||++||+|||++||+++++||++|+++|.++|++|+++
T Consensus       423 ~e~~~~L~k~--------------------------f~~se~qadyLL~M~L~~LT~eei~kL~~E~~el~~ei~eL~~i  476 (514)
T 2inr_A          423 RDAKENLIEV--------------------------YEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHI  476 (514)
T ss_dssp             HHHHHHHHTT--------------------------SSCCHHHHHHHHTCCGGGGSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH--------------------------CCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999998874--------------------------59999999999827899870689999999999999999999998


Q ss_pred             HCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCC
Q ss_conf             0498999999999899999840568833100134345
Q gi|254780182|r  491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM  527 (910)
Q Consensus       491 L~s~~~l~~iI~~EL~eik~kygd~RRT~I~~~~~~i  527 (910)
                      |+|++.+|+++++||.+++++||+||||+|..+.+++
T Consensus       477 L~s~~~l~~~i~~EL~el~kky~~~RrT~I~~~~~e~  513 (514)
T 2inr_A          477 LDNHDALLNVIKEELNEIKKKFKSERLSLIEAEIEEI  513 (514)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHHCCCCCCEEESSCCC-
T ss_pred             HCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHC
T ss_conf             6899999999999999999983898861342666423


No 4  
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xcr_B* 2xcq_A* 2xco_A*
Probab=100.00  E-value=0  Score=1178.69  Aligned_cols=488  Identities=53%  Similarity=0.843  Sum_probs=479.9

Q ss_pred             CCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCCCC
Q ss_conf             76432356660099999876787779988631375400089736789999999878999998113404255664366887
Q gi|254780182|r    9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH   88 (910)
Q Consensus         9 ~~~~~~~i~~~~~~~~m~~syl~Ya~svI~~RAlPd~rDGlKpv~Rrily~m~~~~~~~~~~~~K~a~ivg~v~gkyHPH   88 (910)
                      ..-.+.++...+++++|.++|++||||||.+|||||++||||||||||||||+++++.++++|+|||++||+|+|+||||
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Raip~~~DGlKp~qRkil~~~~~~~~~~~~~~~k~a~~~g~v~~~~~~H  282 (692)
T 2xcs_B          203 AELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGKYHPH  282 (692)
T ss_dssp             ---------EEEHHHHHHHHHHHHHHHHHHHTSSCBTTTCCCHHHHHHHHHHHHTTCCTTSCCEEHHHHHHHHHHHTCCS
T ss_pred             HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHCCCC
T ss_conf             53461035534189988899999999887740475142176578999999999856788887676316589888650888


Q ss_pred             CHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEECC
Q ss_conf             04789999997122011156131478870887769720135789997899999986307684053306898854850343
Q gi|254780182|r   89 GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC  168 (910)
Q Consensus        89 Gd~siy~a~v~maq~~~~r~plidg~GnfGs~dgd~~AA~RYte~rl~~~~~~~l~~i~~~tv~~~~n~D~~~~EP~vlP  168 (910)
                      ||+|+|+|+|+|||+|++|+||++|||||||++||+|||||||||||++++..|+.++++++|+|.+||||+..||+++|
T Consensus       283 Ge~sl~~tiv~maq~~~~n~~ll~~~G~fGs~~g~~~aa~RYi~~~l~~~~~~~~~~~~~~~~~~~~~~dg~~~EP~~~~  362 (692)
T 2xcs_B          283 GDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRFTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLP  362 (692)
T ss_dssp             CHHHHHHHHHHHHCTTTCSSCSEEEESCCCCTTCCCCCCTTTCEEEECHHHHHHHTTTTTTCSCEEECTTSSCEEESSCC
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCC
T ss_conf             56778788999864352166530015887899999630021687751776887642236535655530255546874478


Q ss_pred             CCCCCCHHCCCCCEEEHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCEE
Q ss_conf             22732110167610101331789854789999998876187768888886345866887443447588999987012038
Q gi|254780182|r  169 ARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI  248 (910)
Q Consensus       169 ~~~P~lL~nG~~GIAvGmaTnippHNl~Ev~~a~~~~i~~p~~~~~eL~~~i~GPDFPTGG~I~~~~~i~~~y~tGrG~i  248 (910)
                      +.+|++||||++||||||||||||||+.|||+|++++|++|+++.++||+++|||||||||.|.|.+|+.++|.||||++
T Consensus       363 p~iP~~LvNG~~GIgtG~sT~IP~hNp~eVi~~i~~~l~~~~~~~~el~~~i~gPdfPtgg~i~g~~g~~~~y~tGrg~~  442 (692)
T 2xcs_B          363 ARFPNLLANGASGIAVGMATNIPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSI  442 (692)
T ss_dssp             CSSCHHHHHCEEEECSSCEEEECCBCHHHHHHHHHHHHTCTTCCHHHHTTTCCSBCCTTCCEEECSHHHHHHHHHSEEEE
T ss_pred             CCCCHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCEEECCCCEEEHHCCCCCCE
T ss_conf             65638887368752267631567889899999999985498535899984288898998765877754000221787515


Q ss_pred             EEEEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCC-CCCEEEEEEECCCCCHHHHHHHH
Q ss_conf             99998865433678459999246443528999999999987166501445873037-46557999947988778999999
Q gi|254780182|r  249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQL  327 (910)
Q Consensus       249 ~iR~k~~ie~~~~~k~~ivItEiPY~vnk~~lie~Ia~lv~~~ki~gI~dirDeSd-r~giRivielKr~~~~~~vln~L  327 (910)
                      ++|+++++++.++|+++|+||||||++++++++|+|++++++||+++|+|++|||+ +.|+||||++|++.+++.++++|
T Consensus       443 ~~~~~~~~~~~~~~k~~I~ITELP~g~wt~~yke~L~~lv~~kki~~i~d~~des~~~~~vrivi~~k~~~~~~~~~~~L  522 (692)
T 2xcs_B          443 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVRKDANASVILNNL  522 (692)
T ss_dssp             EEECEEEEEEEETTEEEEEEEECCTTCCHHHHHHHHHHHHHTTCSCCEEEEEECCBTTTBSCEEEEECTTSCHHHHHHHH
T ss_pred             EEEEEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCEEEEEEEECCCCCHHHHHHHH
T ss_conf             89999999994499659999825887778999999999997599776055114566652179999826887889999878


Q ss_pred             HHHCCHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             97610110000002455416630002999999999999999999999999999888778999999874069999998618
Q gi|254780182|r  328 YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS  407 (910)
Q Consensus       328 yk~T~Lq~sf~~N~~aL~~g~P~~l~Lk~iL~~fi~hR~evi~rRt~~~L~ka~~R~HILeGL~~Al~nIDeVI~iIR~S  407 (910)
                      |++|+||+||++||++|++|+|+++++.+||++|++||.++++||.+|+|+++++|+|||+|+++|+++||+||++||+|
T Consensus       523 ~k~tkL~tsis~N~~~l~dg~pk~~~~~eIL~~f~~~Rle~y~KRkey~L~kle~rl~iLegl~~~i~~ID~vIkiIr~s  602 (692)
T 2xcs_B          523 YKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRES  602 (692)
T ss_dssp             HHHSTTEEEEEEECEEEETTEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTC
T ss_pred             HHHCCCEEEECCEEEEEECCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             87577322102069999889368932599999999999999999999999999999999980999998499999999829


Q ss_pred             CCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99789878776312697889999974022111222344523699999999987899998887999999899999999988
Q gi|254780182|r  408 PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC  487 (910)
Q Consensus       408 ~d~~eAk~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~lSe~QA~AILdMrL~rLt~LE~~kl~~E~~eL~~~I~~l  487 (910)
                      +++++|+..|+++                          |++|+.||+|||+|||++||++|++||++|+++|.++|++|
T Consensus       603 k~~~~a~~~L~~~--------------------------f~lse~QadyLL~M~L~~LT~eeieKL~~E~~el~~ei~eL  656 (692)
T 2xcs_B          603 DTDKVAMESLQQR--------------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISEL  656 (692)
T ss_dssp             SSHHHHHHHHHHH--------------------------HTCCHHHHHHHHTCBGGGGSTTHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH--------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9989999999986--------------------------59999999999970999975779999999999999999999


Q ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEC
Q ss_conf             75304989999999998999998405688331001
Q gi|254780182|r  488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE  522 (910)
Q Consensus       488 ~~IL~s~~~l~~iI~~EL~eik~kygd~RRT~I~~  522 (910)
                      ++||+|++.+|+++++||.+++++||++|||+|.+
T Consensus       657 ~~iL~s~~~l~~~i~~EL~~lkkky~~~RRT~Ie~  691 (692)
T 2xcs_B          657 ETILADEEVLLQLVRDELTEIRDRFGDDRRTEIQL  691 (692)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHCCCCCSEEEC
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             99868999999999999999999828987862158


No 5  
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} PDB: 3ifz_A*
Probab=100.00  E-value=0  Score=1180.31  Aligned_cols=464  Identities=48%  Similarity=0.809  Sum_probs=455.5

Q ss_pred             HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHCCCCCCC
Q ss_conf             79988631375400089736789999999878999998113404255664366887047899999971220111561314
Q gi|254780182|r   33 AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE  112 (910)
Q Consensus        33 a~svI~~RAlPd~rDGlKpv~Rrily~m~~~~~~~~~~~~K~a~ivg~v~gkyHPHGd~siy~a~v~maq~~~~r~plid  112 (910)
                      .-|||++|||||++||||||||||||||+++++.++.++.|||++||+|||+||||||+|+|+|||+|||+||+|+||++
T Consensus         2 ~~svi~~RaiP~~~DGLKp~qRkil~~~~~~~l~~~~k~~k~a~~v~e~~~~YHpHGe~Sl~~tiv~mAQ~fsnn~~Ll~   81 (470)
T 3ilw_A            2 NASVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDSLVRMAQPWSLRYPLVD   81 (470)
T ss_dssp             -----CTTTSCBTTTCCCHHHHHHHHHHHHHTCCTTSCCEEHHHHHHHHHHHTCCCCSTHHHHHHHHHHCTTTCSSCSEE
T ss_pred             CCCEEHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             86312004477521388589999999999728988986101156899750146888688999999998561020463414


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEECCCCCCCCHHCCCCCEEEHHHHCCCC
Q ss_conf             78870887769720135789997899999986307684053306898854850343227321101676101013317898
Q gi|254780182|r  113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT  192 (910)
Q Consensus       113 g~GnfGs~dgd~~AA~RYte~rl~~~~~~~l~~i~~~tv~~~~n~D~~~~EP~vlP~~~P~lL~nG~~GIAvGmaTnipp  192 (910)
                      |||||||++||+||||||||||||++|..||.++|.++|+|.|||||+..||++||+.+|++||||++||||||||||||
T Consensus        82 ~~G~FGs~~g~~aAa~RYi~t~Ls~~~~~if~~~d~~~l~~~~n~Dg~~~EP~~y~piiP~vLvNG~~GIgtG~sT~IP~  161 (470)
T 3ilw_A           82 GQGNFGSPGNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPP  161 (470)
T ss_dssp             EESCCCCSSSCCCCCTTSCEEEECHHHHHHHTTGGGTCSCEEECTTSSSEEESSCCCSSCHHHHHCEECSSTTCSCEECC
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEEEECCCCCC
T ss_conf             78999999999764413688744189999973432041046756578645872016436299863777525300036776


Q ss_pred             CCHHHHHHHHHHHHHCCCCCHHH----HHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEEEEEECCCCCEEEEE
Q ss_conf             54789999998876187768888----88634586688744344758899998701203899998865433678459999
Q gi|254780182|r  193 HNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV  268 (910)
Q Consensus       193 HNl~Ev~~a~~~~i~~p~~~~~e----L~~~i~GPDFPTGG~I~~~~~i~~~y~tGrG~i~iR~k~~ie~~~~~k~~ivI  268 (910)
                      ||+.|||+||+++|++|+++..+    +|++++||||||||.|.|..|+.++|+||+|++++|++|++|+...|+|+|+|
T Consensus       162 ~Np~evi~~~~~~l~~~~~~~~~~~~~~~~~~~gPdfp~g~~i~g~~~~~~~y~~G~g~~~~~~~~~iee~~~gk~~i~I  241 (470)
T 3ilw_A          162 HNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQGTADAYKTGRGSIRMRGVVEVEEDSRGRTSLVI  241 (470)
T ss_dssp             CCHHHHHHHHHHHHHTTTCCHHHHHHHHHHHCCSCCCTTCCEEECSHHHHHHHHHSEEEEEEECEEEEEECTTCCEEEEE
T ss_pred             CCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCEEECCCCHHHHHHCCCCEEEEEEEEEEEECCCCCEEEEE
T ss_conf             01567999999986477421035589986157789989876676662446674259824999879999975798258999


Q ss_pred             ECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH-CCCCCEEEEEEECCCCCHHHHHHHHHHHCCHHCCCCCEEEEEECC
Q ss_conf             2464435289999999999871665014458730-374655799994798877899999997610110000002455416
Q gi|254780182|r  269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY  347 (910)
Q Consensus       269 tEiPY~vnk~~lie~Ia~lv~~~ki~gI~dirDe-Sdr~giRivielKr~~~~~~vln~Lyk~T~Lq~sf~~N~~aL~~g  347 (910)
                      |||||++++++++++|++++.+||+++|+|++|+ |++.|+||||++|++++++.++++|||+|+||+||++||+||.||
T Consensus       242 tElP~~~~~~~~~e~i~~~~~~kk~~~i~di~de~s~~~~vrivI~lk~~~~~~~~~~~L~k~tkL~ts~s~n~~~l~d~  321 (470)
T 3ilw_A          242 TELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDG  321 (470)
T ss_dssp             EECCTTCCHHHHHHHHHHHHHTTSCTTEEEEEECCBTTTBCCEEEEECTTSCHHHHHHHHHHHSTTEEEEEEECEEEETT
T ss_pred             EEECCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCEEEEECCEEEEEECC
T ss_conf             86214454889999999997568867734302034777654899852687778999999998558066650369999899


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHH
Q ss_conf             63000299999999999999999999999999988877899999987406999999861899789878776312697889
Q gi|254780182|r  348 KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI  427 (910)
Q Consensus       348 ~P~~l~Lk~iL~~fi~hR~evi~rRt~~~L~ka~~R~HILeGL~~Al~nIDeVI~iIR~S~d~~eAk~~L~~~~~~~~~~  427 (910)
                      +|+.+++++||++|++||.++++||.+|+|+++++|+|+|+|+++++.+||++|.+||+|++.++|++.|++.       
T Consensus       322 ~pk~~~~~eIL~~f~~~R~~~y~kR~~~~L~k~~~rl~il~~~~~~i~~id~~i~iir~s~~~~~~k~~l~k~-------  394 (470)
T 3ilw_A          322 VPRTLRLDQLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARAGLIEL-------  394 (470)
T ss_dssp             EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHCSSHHHHHHHHHHH-------
T ss_pred             EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-------
T ss_conf             7147379999999999999999999999999999999999759999970277788887158889999987774-------


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf             99997402211122234452369999999998789999888799999989999999998875304989999999998999
Q gi|254780182|r  428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLS  507 (910)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~f~lSe~QA~AILdMrL~rLt~LE~~kl~~E~~eL~~~I~~l~~IL~s~~~l~~iI~~EL~e  507 (910)
                                         |+||+.||++||+|||++||++|+++|++|+++|.+++++|++||+|++.+|+++++||.+
T Consensus       395 -------------------~~lse~qadyLL~M~L~~LT~ee~~kL~~E~~~l~~ei~~L~~il~~~~~l~~~i~~EL~~  455 (470)
T 3ilw_A          395 -------------------LDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDELAE  455 (470)
T ss_dssp             -------------------HTCCHHHHHHHHTCBGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             -------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             -------------------3999999999985199987168899999999999999999999968999999999999999


Q ss_pred             HHHHCCCCCCCEEEC
Q ss_conf             998405688331001
Q gi|254780182|r  508 VKDELDTPRRTRIVE  522 (910)
Q Consensus       508 ik~kygd~RRT~I~~  522 (910)
                      ++++||+||||+|+.
T Consensus       456 l~~k~~~~RrT~I~~  470 (470)
T 3ilw_A          456 IVDRHGDDRRTRIIA  470 (470)
T ss_dssp             HHHHHCCCCCSEEEC
T ss_pred             HHHHHCCCCCCCCCC
T ss_conf             999828987884379


No 6  
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A*
Probab=100.00  E-value=0  Score=1188.48  Aligned_cols=489  Identities=44%  Similarity=0.749  Sum_probs=480.9

Q ss_pred             CCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCCCCCHHHH
Q ss_conf             35666009999987678777998863137540008973678999999987899999811340425566436688704789
Q gi|254780182|r   14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI   93 (910)
Q Consensus        14 ~~i~~~~~~~~m~~syl~Ya~svI~~RAlPd~rDGlKpv~Rrily~m~~~~~~~~~~~~K~a~ivg~v~gkyHPHGd~si   93 (910)
                      .+|.+++|++.|.++|++||||||.+|||||++||||||||||||||++++++++++|+|||++||+|||+||||||+|+
T Consensus         2 ~~~~~~~~~~~~~~~~~~ya~~~i~~RaiP~~~DGLKp~qRkiL~~~~~~~l~~~~~~~KvA~~~g~v~~~yHpHGe~Sl   81 (496)
T 2nov_A            2 SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDSSI   81 (496)
T ss_dssp             ---------------------------CCCCTTTCCCHHHHHHHHHHHHTTCCTTSCCEEHHHHHHHHHHHTCCSCSTTT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHCCCCCCHHHH
T ss_conf             98723669999999999888898661148842148848998999998862788898802426379988741588778899


Q ss_pred             HHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEECCCCCCC
Q ss_conf             99999712201115613147887088776972013578999789999998630768405330689885485034322732
Q gi|254780182|r   94 YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN  173 (910)
Q Consensus        94 y~a~v~maq~~~~r~plidg~GnfGs~dgd~~AA~RYte~rl~~~~~~~l~~i~~~tv~~~~n~D~~~~EP~vlP~~~P~  173 (910)
                      |+|+|+|||+||+|+||++|||||||++|++|||||||||||++++..++.++|.++|+|.+||||+..||+++|+.||+
T Consensus        82 ~~tiv~mAq~fsnn~~Ll~~~G~FGsr~~~~~Aa~RYi~~~l~~~~~~lf~~~d~~~~~~~~~~dg~~~EP~~y~piiP~  161 (496)
T 2nov_A           82 YDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPN  161 (496)
T ss_dssp             HHHHHHTTCTTTSSSCSEEEESCSCCSSSCCCCCTTTCEEEECHHHHTTSTTCCCCCSCEEECSSSSSEEESSCCCSSCH
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEECCCCCH
T ss_conf             99999997874247644037788788899704468889998888798752564423234655888862277000465758


Q ss_pred             CHHCCCCCEEEHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEE
Q ss_conf             11016761010133178985478999999887618776888888634586688744344758899998701203899998
Q gi|254780182|r  174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV  253 (910)
Q Consensus       174 lL~nG~~GIAvGmaTnippHNl~Ev~~a~~~~i~~p~~~~~eL~~~i~GPDFPTGG~I~~~~~i~~~y~tGrG~i~iR~k  253 (910)
                      +||||++||||||||||||||+.|||+||+++|++|++++++||+++|||||||||+|.+.+++.++|++|+|+|++||+
T Consensus       162 vLvNG~~GIgtG~sT~IP~~Np~evi~~~~~~l~~~~~~~~~l~~~~~~pdfptGg~i~~~~~~~~~y~~g~G~i~~~~~  241 (496)
T 2nov_A          162 LLVNGSTGISAGYATDIPPHNLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSK  241 (496)
T ss_dssp             HHHHCEECCC-CCCCEECCCCHHHHHHHHHHHHHCTTCCHHHHTTTCCSCCCTTCCEECCHHHHHHHHHHSEEECCEECE
T ss_pred             HHHCCCCCEEEEHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCEEECCHHHHHHHHCCCCEEEEEEE
T ss_conf             87547776242001057777889999999998509999989998637889899874554716679998569943999667


Q ss_pred             EEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHCCH
Q ss_conf             86543367845999924644352899999999998716650144587303746557999947988778999999976101
Q gi|254780182|r  254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL  333 (910)
Q Consensus       254 ~~ie~~~~~k~~ivItEiPY~vnk~~lie~Ia~lv~~~ki~gI~dirDeSdr~giRivielKr~~~~~~vln~Lyk~T~L  333 (910)
                      +++|..+.|+++|+||||||++++++++++|++|++++|+++|+|++|+|+++|+||||++|++.+++.++++|||+|+|
T Consensus       242 ~~~e~~~~~~~~i~ITELP~g~~t~~~~e~l~~l~~~~ki~~i~d~~Des~~~~v~i~I~lk~~~~~~~~~~~l~k~t~l  321 (496)
T 2nov_A          242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVLNYLFKYTDL  321 (496)
T ss_dssp             EEEEECSTTCEEEEEEECCTTCCHHHHHHHTTHHHHTTSCC---CCEEC-----CCEEC----CCCCTTHHHHHHHSSTT
T ss_pred             EEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHCEEE
T ss_conf             89997269834899997066565778999999876438767701214447888508999815322467789999861010


Q ss_pred             HCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf             10000002455416630002999999999999999999999999999888778999999874069999998618997898
Q gi|254780182|r  334 QSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA  413 (910)
Q Consensus       334 q~sf~~N~~aL~~g~P~~l~Lk~iL~~fi~hR~evi~rRt~~~L~ka~~R~HILeGL~~Al~nIDeVI~iIR~S~d~~eA  413 (910)
                      |++|++||+++.+++|+.+++++||+.|++||.++++||.+|+|+++++|+|+|+|+++++++||++|.+||+|++.++|
T Consensus       322 ~st~~~n~~~~~~~~pk~~sv~eIL~~f~~~R~~~~~rR~~~~l~~~e~rl~il~~~~~fi~~i~~~i~~ir~~k~~~~~  401 (496)
T 2nov_A          322 QINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA  401 (496)
T ss_dssp             EECCEEECEEEETTEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHTTSSSHHHH
T ss_pred             EEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf             01056555555305884056999999989999999999999999999999999862899998565678888717987999


Q ss_pred             HHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             78776312697889999974022111222344523699999999987899998887999999899999999988753049
Q gi|254780182|r  414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS  493 (910)
Q Consensus       414 k~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~lSe~QA~AILdMrL~rLt~LE~~kl~~E~~eL~~~I~~l~~IL~s  493 (910)
                      +..|++.                          |+||+.||++||+|||++||++|++||++|+++|.++|++|++||+|
T Consensus       402 ~~~l~~~--------------------------f~lse~q~dyLL~M~L~~LT~~e~~kL~~E~~~l~~ei~~L~~il~~  455 (496)
T 2nov_A          402 KENLKVS--------------------------YDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD  455 (496)
T ss_dssp             HSSCCC---------------------------CCCCHHHHHHHHTCBGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHH--------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             9999986--------------------------59999999999975899975899999999999999999999999689


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCC
Q ss_conf             89999999998999998405688331001343453
Q gi|254780182|r  494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME  528 (910)
Q Consensus       494 ~~~l~~iI~~EL~eik~kygd~RRT~I~~~~~~i~  528 (910)
                      ++.+++++++||.+++++||+||||+|.+..++++
T Consensus       456 ~~~l~~~~~~eL~~l~~k~~~~RrT~i~~~~~~~~  490 (496)
T 2nov_A          456 ERTMYNLMKKELREVKKKFATPRLSSLEDTAKALE  490 (496)
T ss_dssp             TTHHHHHHHHHHHHHHHHHCCCCCSBC--------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
T ss_conf             99999999999999999838988860748676664


No 7  
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A*
Probab=100.00  E-value=0  Score=1112.15  Aligned_cols=495  Identities=40%  Similarity=0.656  Sum_probs=472.4

Q ss_pred             CCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCCCC
Q ss_conf             76432356660099999876787779988631375400089736789999999878999998113404255664366887
Q gi|254780182|r    9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH   88 (910)
Q Consensus         9 ~~~~~~~i~~~~~~~~m~~syl~Ya~svI~~RAlPd~rDGlKpv~Rrily~m~~~~~~~~~~~~K~a~ivg~v~gkyHPH   88 (910)
                      ..-.+.....+++.+.+.+.|+.||||||.+|||||++||||||||||||+|+++++.++.++.|||++||+|+|+||||
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~ys~~~~~~R~iP~~~DGLKp~QRkIL~~~~k~~l~~~~k~~k~a~~vg~v~~~~yhH  345 (767)
T 2xkj_E          266 TSLAHHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSARTVGDVLGKYHPH  345 (767)
T ss_dssp             --------CEEEHHHHHHHHHHHHHHHHHHHHTCCBTTTSCCHHHHHHHHHHHHTTCCTTSCCEEHHHHHHHHHHHTCCS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf             55565454564299999999987777766640256154405588899999999874057741788887889886233888


Q ss_pred             CHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEEC
Q ss_conf             0478999999712201115613147887088776-972013578999789999998630768405330689885485034
Q gi|254780182|r   89 GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG-DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL  167 (910)
Q Consensus        89 Gd~siy~a~v~maq~~~~r~plidg~GnfGs~dg-d~~AA~RYte~rl~~~~~~~l~~i~~~tv~~~~n~D~~~~EP~vl  167 (910)
                      ||+|+|+|+|+|||+|++|+||++|||||||++| ++|||||||||||++++..++.++|.++++|.+||||+..||+++
T Consensus       346 Ge~Sl~~tiv~MAQ~fsnNipLl~p~GqFGsr~gg~daAa~RYI~t~Ls~~~~~if~~~D~~~l~y~~~~d~~~~eP~~y  425 (767)
T 2xkj_E          346 GDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRYTEAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITL  425 (767)
T ss_dssp             CHHHHHHHHHHHHCTTTCSSCSEECSSCCCBTTBTTCCCCTTTCEEEECGGGHHHHTTTTTTCSCEEECTTSSSEEESSC
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCEECCCCCEECCCCC
T ss_conf             61577788999724543187650114576766899444557888736788899861055731330311789826677522


Q ss_pred             CCCCCCCHHCCCCCEEEHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCC-CHHHHHHHHHHCCC
Q ss_conf             32273211016761010133178985478999999887618776888888634586688744344-75889999870120
Q gi|254780182|r  168 CARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRG  246 (910)
Q Consensus       168 P~~~P~lL~nG~~GIAvGmaTnippHNl~Ev~~a~~~~i~~p~~~~~eL~~~i~GPDFPTGG~I~-~~~~i~~~y~tGrG  246 (910)
                      |..+|++||||++||||||||||||||+.|||++|+++|++++++.+++++++|||||||||.|. +.+++.++|.||+|
T Consensus       426 ~piIPmvLVNG~~GIgtG~ST~IP~hNp~eII~~i~~~l~~~~~~~e~~~~~~p~p~~p~g~~i~~~~~~~~~~~~~g~G  505 (767)
T 2xkj_E          426 PARVPNILLNGTTGIAVGMATDIPPHNLREVVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRG  505 (767)
T ss_dssp             CCSSCHHHHHCEEEEETTEEEEECCCCHHHHHHHHHHHHHCTTCCHHHHHHHCCSCCCSSSCEECCCHHHHHHHHHHSEE
T ss_pred             CCCCHHHHHCCCCCEEHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCEEECCHHHHHHHHHCCCC
T ss_conf             65353998647864102443177987789999999999728655646786215789899874796688888887762897


Q ss_pred             EEEEEEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCC-CEEEEEEECCC-CCHHHHH
Q ss_conf             389999886543367845999924644352899999999998716650144587303746-55799994798-8778999
Q gi|254780182|r  247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIELKRG-ASADVIL  324 (910)
Q Consensus       247 ~i~iR~k~~ie~~~~~k~~ivItEiPY~vnk~~lie~Ia~lv~~~ki~gI~dirDeSdr~-giRivielKr~-~~~~~vl  324 (910)
                      ++.+||+++++     +++|+||||||++++++++++|.++++++|++++.|++|+|+.+ ++|+|++++++ .+++.++
T Consensus       506 ~~~~r~~~~i~-----~~~I~ITELPig~wt~~yke~L~~li~~kki~~i~di~D~s~~~~~irivi~~k~~~~~~e~~~  580 (767)
T 2xkj_E          506 SYRMRAVYTIE-----KNEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVIVLRSNRIDAEAVM  580 (767)
T ss_dssp             EEEEECEEEEE-----TTEEEEEECCTTCCHHHHHHHHHHHHHTTCCTTEEEEEECCCSSCSSCEEEEESCTTSCHHHHH
T ss_pred             CEEEEEEEEEC-----CCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCEEEEEECCCCCCCHHHHH
T ss_conf             17874368970-----6549999528725677799999999975997764212332567786699994476647999999


Q ss_pred             HHHHHHCCHHCCCCCEEEEEE-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999976101100000024554-1663000299999999999999999999999999988877899999987406999999
Q gi|254780182|r  325 NQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRI  403 (910)
Q Consensus       325 n~Lyk~T~Lq~sf~~N~~aL~-~g~P~~l~Lk~iL~~fi~hR~evi~rRt~~~L~ka~~R~HILeGL~~Al~nIDeVI~i  403 (910)
                      +.|||+|+||++|++||+++. +|+|+.+++.+||++|++||.+++.||.+|+|+++++|+|||+||++|+.+||+||++
T Consensus       581 ~~L~k~t~L~~s~s~N~~~i~~~g~~Ky~s~~EIL~eF~~~Rl~~y~KRkey~L~kle~rl~iLegli~~~~~iD~vI~i  660 (767)
T 2xkj_E          581 SHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKKTVTRRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRI  660 (767)
T ss_dssp             HHHHHHSTTEEEEEEECEEECTTSCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHCCCCCCCHHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99986401012110468998559974667899999999999999999999999999999999998299999829999999


Q ss_pred             HHHCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             86189978987877631269788999997402211122234452369999999998789999888799999989999999
Q gi|254780182|r  404 IRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE  483 (910)
Q Consensus       404 IR~S~d~~eAk~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~lSe~QA~AILdMrL~rLt~LE~~kl~~E~~eL~~~  483 (910)
                      ||+|+++   +..|+++                          |+||+.||+|||+|||++||++|+++|++|+++|.++
T Consensus       661 Ir~s~~~---k~~L~~~--------------------------f~l~e~qadyLL~M~L~~LTk~e~~kL~~E~~el~~e  711 (767)
T 2xkj_E          661 IREEDQP---KPVLMEH--------------------------FNIDEIQAEAILELKLRHLAKLEEMEIRHEQDELSAK  711 (767)
T ss_dssp             HHHCSSH---HHHHHHH--------------------------HTCCHHHHHHHHHSCHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHCCCCH---HHHHHHH--------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9827846---8999986--------------------------5999999999998699984524799999999999999


Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCC--CCCCCCCCCCCCC
Q ss_conf             99887530498999999999899999840568833100134--3453010145678
Q gi|254780182|r  484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVRED  537 (910)
Q Consensus       484 I~~l~~IL~s~~~l~~iI~~EL~eik~kygd~RRT~I~~~~--~~i~~EdlI~~E~  537 (910)
                      +++|+++|+|++.+++++++||.+++++||+||||+|.+..  .+++.||+|++|.
T Consensus       712 i~eL~~iL~s~~~l~~~i~~EL~el~kkyg~~RrT~I~~~~e~~~~~~e~~i~~e~  767 (767)
T 2xkj_E          712 AAIIREQLENPESLKNLIISELKEDAKKFGDERRSPIVARAEAVQIKEQDLMPAET  767 (767)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCSSCBCCCCCCCCC----------
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHCCCCCC
T ss_conf             99999997899999999999999999981898873212665435676533577789


No 8  
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A*
Probab=100.00  E-value=0  Score=922.35  Aligned_cols=484  Identities=17%  Similarity=0.220  Sum_probs=406.1

Q ss_pred             CCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCC
Q ss_conf             88764323566600999998767877799886313754000897367899999998789999981134042556643668
Q gi|254780182|r    7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH   86 (910)
Q Consensus         7 ~~~~~~~~~i~~~~~~~~m~~syl~Ya~svI~~RAlPd~rDGlKpv~Rrily~m~~~~~~~~~~~~K~a~ivg~v~gkyH   86 (910)
                      +++...+..+.++++++.|..+|+.||||++. |||||++||||||||||||+|+++++.++.++.|||++||+++| ||
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-RaiP~~~DGlKp~qRkil~~~~~~~~~~~~k~~~~a~~v~~~~~-yh  315 (757)
T 3l4j_A          238 EPGTVLDPTLKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTA-YH  315 (757)
T ss_dssp             CTTCCCCSSCSEECHHHHHHHTHHHHHHHHHH-HHSCBTTTCCCHHHHHHHHHHHHTTTTSCEEHHHHHHHHHHHTT-CC
T ss_pred             CCCCEECCCCCEEEHHHHHHHHHHHHHHHHHH-HHCCCHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHC-CC
T ss_conf             65401048865233899888989998798898-61762331355899999999986189976771442421134306-88


Q ss_pred             CCCHHHHHHHHHHHCCCH--HCCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCC
Q ss_conf             870478999999712201--115613147887088--7769720135789997899999986307684053306898854
Q gi|254780182|r   87 PHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ  162 (910)
Q Consensus        87 PHGd~siy~a~v~maq~~--~~r~plidg~GnfGs--~dgd~~AA~RYte~rl~~~~~~~l~~i~~~tv~~~~n~D~~~~  162 (910)
                       |||+|+|+|||+|||+|  |+|+||++|||||||  .+|++||||||||||||+++..||.++|+++|+|.+| ||...
T Consensus       316 -HGe~Sl~~aiv~maQ~~~gsnn~pLl~~~GnFGsr~~~g~~~AA~RYi~~rls~~~~~lf~~~D~~~l~y~~~-dg~~~  393 (757)
T 3l4j_A          316 -HGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQE-DEKTV  393 (757)
T ss_dssp             -SCHHHHHHHHHHHHCCSTTSCSSCSBCCBSCCCCTTTTTTTCCCTTTCEECBCTTHHHHSCGGGGGGSCEEEC-SSSEE
T ss_pred             -CCCHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCC-CCCEE
T ss_conf             -8841678999998611130576200036788566678898644578999863053675503356660113568-87622


Q ss_pred             CCEECCCCCCCCHHCCCCCEEEHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             85034322732110167610101331789854789999998876187768888886345866887443447588999987
Q gi|254780182|r  163 EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA  242 (910)
Q Consensus       163 EP~vlP~~~P~lL~nG~~GIAvGmaTnippHNl~Ev~~a~~~~i~~p~~~~~eL~~~i~GPDFPTGG~I~~~~~i~~~y~  242 (910)
                      ||++||+.||+||||||+|||||||||||||||.|||+||+++|++|++  .+++.+++||++++.+             
T Consensus       394 EP~~y~p~iP~lLvNGa~GIavG~aTnIPphNp~eVi~~~~~~i~~~~~--~~~~p~~~Gf~g~i~~-------------  458 (757)
T 3l4j_A          394 EPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEEL--EQMHPWFRGWTGTIEE-------------  458 (757)
T ss_dssp             EESCCCCSSCHHHHHCEEEECSSCEEEECCCCHHHHHHHHHHHHTTCCC--CCCCCCCTTCCSEEEE-------------
T ss_pred             CCCCCCCCCHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHCCCHH--HHCCCCCCCCCCCCCC-------------
T ss_conf             5630232016888741456004641377898868999999998187145--4317875788775210-------------


Q ss_pred             HCCCEEEEEEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHH-CCCCCH-HHHHHHHCCCCCEEEEEEECCCCCH
Q ss_conf             01203899998865433678459999246443528999999999987-166501-4458730374655799994798877
Q gi|254780182|r  243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR-EKRIVD-IADLRDESDRQGYRVVIELKRGASA  320 (910)
Q Consensus       243 tGrG~i~iR~k~~ie~~~~~k~~ivItEiPY~vnk~~lie~Ia~lv~-~~ki~g-I~dirDeSdr~giRivielKr~~~~  320 (910)
                      ++.|+++++|+++.    .|+++|+|||||||+++++++|+|++++. ++|+.+ |.|++| |+++|+||||++|+++++
T Consensus       459 ~~~g~~~~~g~~e~----~~~~~I~ITELP~gv~t~~~~e~i~~~l~~~~Ki~~~i~d~~d-~s~~~Vr~vI~lk~~~~~  533 (757)
T 3l4j_A          459 IEPLRYRMYGRIEQ----IGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEE-QHDDNIKFIITLSPEEMA  533 (757)
T ss_dssp             EETTEEEEECEEEE----EETTEEEEEECCTTCCHHHHHHHHHHHHHCCSSSCCCCSEEEE-CCSSSCCEEEECCHHHHH
T ss_pred             CCCCEEEEEEEEEE----CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHCCC-CCCCCEEEEEEECCCCCH
T ss_conf             14416999999997----2763599983673144889999998765024545553000114-567622799998166651


Q ss_pred             HHHHHHHHHHCCHHCCCCCEEEEEECC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_conf             899999997610110000002455416---6300029999999999999999999999999998887789999998740-
Q gi|254780182|r  321 DVILNQLYRYTSLQSLFSVNMVALNGY---KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN-  396 (910)
Q Consensus       321 ~~vln~Lyk~T~Lq~sf~~N~~aL~~g---~P~~l~Lk~iL~~fi~hR~evi~rRt~~~L~ka~~R~HILeGL~~Al~n-  396 (910)
                      +.+++.|||+|.||++|++|++++.|.   .|+.+++++||++|++||.+++.||.+|.|++++.++|+++..+..+.. 
T Consensus       534 ~~~~~~l~k~~kL~ss~s~~Nm~l~d~~g~i~k~~sl~eIL~~f~~~Rl~~y~kRk~~ll~~l~~eL~~l~~k~rFI~~v  613 (757)
T 3l4j_A          534 KTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMI  613 (757)
T ss_dssp             HHHHHCHHHHTTCEEEEECSCCEEECTTSCEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             77765366543211235256799984889762018999999999999999999999999999999999987289999775


Q ss_pred             -----------HHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCC-----------CCCCCCCCCCCCCHHHH
Q ss_conf             -----------69999998618997898787763126978899999740221-----------11222344523699999
Q gi|254780182|r  397 -----------LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS-----------SYTIGSDGTMYLSEVQT  454 (910)
Q Consensus       397 -----------IDeVI~iIR~S~d~~eAk~~L~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~f~lSe~QA  454 (910)
                                 .|+||++||+++.+..++..++...|...............           .........+..+..|+
T Consensus       614 i~~~I~I~~~~k~eIi~~L~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~y  693 (757)
T 3l4j_A          614 IEKELTVTNKPRNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTY  693 (757)
T ss_dssp             HTTSCCCSSSCHHHHHHHHHHTTCCEECSSCCEECCC------------------------------------CTTTCBS
T ss_pred             HHCEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCHHHH
T ss_conf             41113301688899999999679933446665430230466776654310011121000000234444320100134568


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH----HHHHHHHHHHHHHCCCCC
Q ss_conf             99998789999888799999989999999998875304989999----999998999998405688
Q gi|254780182|r  455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL----GIIKQELLSVKDELDTPR  516 (910)
Q Consensus       455 ~AILdMrL~rLt~LE~~kl~~E~~eL~~~I~~l~~IL~s~~~l~----~iI~~EL~eik~kygd~R  516 (910)
                      +|||+|||++||++++++|++|++++.+++++|++.  +.+.+|    +.+.+|+.+..++++++|
T Consensus       694 dYLL~M~L~~LT~eevekL~~E~~~l~~Ei~~L~~~--t~~~lW~~DL~~l~~e~~k~~~~~~e~R  757 (757)
T 3l4j_A          694 EYLLGMRIWSLTKERYQKLLKQKQEKETELENLLKL--SAKDIWNTDLKAFEVGYQEFLQRDAEAR  757 (757)
T ss_dssp             HHHHTSCGGGGSHHHHHHHHHHHHHHHHHHHHHHTC--CHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             799838588877999999999999999999999868--9999999999999999999998752379


No 9  
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=100.00  E-value=0  Score=624.77  Aligned_cols=354  Identities=37%  Similarity=0.580  Sum_probs=314.0

Q ss_pred             CCCCCCCEEEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEECCCCEEEEEECCCCEEEEECCCCCCCC
Q ss_conf             01456781899907970523310000023345652110001464101011332377739999548939998200043224
Q gi|254780182|r  531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS  610 (910)
Q Consensus       531 dlI~~E~vvV~lS~~GyIKr~~~~~yr~Q~RggkG~~~~~~ke~D~v~~~~~~~t~d~LLfFTs~Gkvy~l~v~~IP~~s  610 (910)
                      |||++|+|+|++|+.|||||+|+++|++|+|||+|..++++|++|++.+++.|+|||+||||||+|+||+++||+||+++
T Consensus         2 dlI~~e~v~V~lT~~GyiKR~~~~~~~~q~rg~~g~~~~~~k~~D~~~~~~~~~t~d~ll~fT~~G~vy~l~v~~iP~~~   81 (370)
T 3l6v_A            2 DLIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAG   81 (370)
T ss_dssp             CCCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred             CCCCCCCEEEEEECCCEEEEEEHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCC
T ss_conf             86778888999958986897317996420268988323625788538999998089879999389779999830176778


Q ss_pred             CCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEECHHHHHHCCCCCEEEEEECCCCEEEEEEEC
Q ss_conf             44565541245453655620025663012566687179999479918984236862047772278661589857888961
Q gi|254780182|r  611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC  690 (910)
Q Consensus       611 r~skG~pi~nll~l~~~E~I~ail~~~~~~~~~~~~~Lvl~Tk~G~VKkt~l~ef~~~r~~G~~aikLkegD~Li~v~~~  690 (910)
                      |+++|.||.|++++.++|+|+++++++++.   +.+||+|+|++|+|||+++++|.+.+++|++||+|+++|+|++|.++
T Consensus        82 ~~~~G~~l~~ll~~~~~e~i~~~~~~~~~~---~~~~lv~~T~~G~iKr~~l~~f~~~~~~g~~aikLk~~Delv~v~~~  158 (370)
T 3l6v_A           82 SNARGRPIINWIPLESGERVQAVLPVREYA---DNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALT  158 (370)
T ss_dssp             TTSCCEEGGGSCCCCTTCCEEEEEEESCCC---TTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEE
T ss_pred             CCCCCCEEEECCCCCCCCCEEEEEEECCCC---CCCEEEEEECCCCEEECCHHHHHHCCCCCCEEEECCCCCEEEEEEEE
T ss_conf             666681600013557786168999904467---77669999789858966579941113354078984899879978974


Q ss_pred             CCCCEEEEEECCCEEEEEEHHHCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             89826999936985999758762354786655357675289986999897336665420000012223333333455544
Q gi|254780182|r  691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE  770 (910)
Q Consensus       691 ~~~~~Iil~T~~G~~lrF~~~evr~~~GR~a~GVkgIkL~~~D~Vv~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  770 (910)
                      +++++|+++|++|++|||++++||+| ||+|+||+||+|+++|+||+|.++.+......+....                
T Consensus       159 ~~~~~i~l~T~~G~~lrf~~~~v~~~-gr~a~GVk~i~L~~~d~vv~~~v~~~~~~~~~~~~~~----------------  221 (370)
T 3l6v_A          159 DGDRDVLLFASNGKTVRFGESTVRSM-GRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDE----------------  221 (370)
T ss_dssp             CSCCEEEEEETTSEEEEEEGGGSCBC-CTTCCCEECCCCCTTCCEEEEEEECCC--------------------------
T ss_pred             CCCEEEEEEECCCEEEEEEECEECCC-CCCCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCC----------------
T ss_conf             59813999931651899860113236-8765643667708999899989641555432110022----------------


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCEEEEEHHHCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCC
Q ss_conf             44444433322222320011101256867999975993453017884866757741488760677776868999972899
Q gi|254780182|r  771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN  850 (910)
Q Consensus       771 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~IL~vTe~G~GKRt~~~eyr~q~RGgkGv~~ik~~~~n~~g~lv~~~~V~~~  850 (910)
                        .......................+++++|++|++||+||+++++||.|+|||+|++++++.++  .|.||+++.|.++
T Consensus       222 --~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~vT~~G~~Kr~~~~e~~~~~Rg~~G~~~~k~~~~--~d~lv~~~~v~~~  297 (370)
T 3l6v_A          222 --SAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTER--NGKLVRAVLLGST  297 (370)
T ss_dssp             ---------------------------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTT--TCSEEEEEEECTT
T ss_pred             --CHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEECCHHHCCCCCCCCCCEEEEEECCC--CCEEEEEEEECCC
T ss_conf             --001100134544310000013678507999716884276777765733588665166687478--7349999992699


Q ss_pred             CEEEEEECCCEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCC
Q ss_conf             6499994599899999010554451568738898089987999998356655566555
Q gi|254780182|r  851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES  908 (910)
Q Consensus       851 DeIlliT~~G~iiR~~v~~I~~~gR~a~GV~i~~L~~~D~Vv~va~i~~~e~~de~e~  908 (910)
                      |+|||+|++|+++|+++++||.+||+|+||++|+|+++|+|++|++++.+..+++...
T Consensus       298 d~ill~T~~G~~~r~~~~~I~~~gR~t~Gv~~i~L~~~d~v~sv~~v~~~~~e~~~~~  355 (370)
T 3l6v_A          298 DEVMLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQAVERLDASLEEPEDVV  355 (370)
T ss_dssp             CEEEEEETTCCEEEEEGGGSCBCCSSSCCEESSCCCTTCCEEEEEEECCCC-------
T ss_pred             CEEEEEECCCEEEEEEHHHCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCC
T ss_conf             7599995899899989345476788789847688899999999998166566854333


No 10 
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=100.00  E-value=0  Score=600.49  Aligned_cols=307  Identities=43%  Similarity=0.743  Sum_probs=294.2

Q ss_pred             CCCCEEEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCC
Q ss_conf             56781899907970523310000023345652110001464101011332377739999548939998200043224445
Q gi|254780182|r  534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA  613 (910)
Q Consensus       534 ~~E~vvV~lS~~GyIKr~~~~~yr~Q~RggkG~~~~~~ke~D~v~~~~~~~t~d~LLfFTs~Gkvy~l~v~~IP~~sr~s  613 (910)
                      .+|+|+|++|++|||||+|+++|++|+|||+|+.++++|++|++.+++.|+|||+||||||+|++|++++|+||+++|++
T Consensus         1 ~eEdv~V~ls~~GyiKR~~~~~y~~q~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fTn~G~~~~~~v~eIp~~~~~~   80 (307)
T 1zi0_A            1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA   80 (307)
T ss_dssp             CCCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred             CCCCEEEEEECCCEEEEEEHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCC
T ss_conf             97679999968986887428997521468998334503789558999997189879999279759999920274212346


Q ss_pred             CCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEECHHHHHHCCCCCEEEEEECCCCEEEEEEECCCC
Q ss_conf             65541245453655620025663012566687179999479918984236862047772278661589857888961898
Q gi|254780182|r  614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE  693 (910)
Q Consensus       614 kG~pi~nll~l~~~E~I~ail~~~~~~~~~~~~~Lvl~Tk~G~VKkt~l~ef~~~r~~G~~aikLkegD~Li~v~~~~~~  693 (910)
                      +|.||.|++++.++|+|++++++.+++   ++.||+|+|++|+|||+++++|.+.+++|++||+|++||+|++|.+++++
T Consensus        81 ~G~~i~~ll~l~~~E~i~~~~~~~~~~---~~~~l~~~T~~G~iKr~~l~~f~~~r~~g~~ai~L~~~Delv~v~~~~~~  157 (307)
T 1zi0_A           81 RGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGE  157 (307)
T ss_dssp             CCEEGGGTSCCCTTCCEEEEEEESCCC---TTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTT
T ss_pred             CCCCHHEEECCCCCCEEEEEECCCCCC---CCCEEEEEECCCCEEEEECCCCCCCCCCCCEEEECCCCCEEEEEEEECCC
T ss_conf             782855040688885489998123356---67449999678717873031025767357087755899999999994799


Q ss_pred             CEEEEEECCCEEEEEEHHHCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             26999936985999758762354786655357675289986999897336665420000012223333333455544444
Q gi|254780182|r  694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT  773 (910)
Q Consensus       694 ~~Iil~T~~G~~lrF~~~evr~~~GR~a~GVkgIkL~~~D~Vv~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  773 (910)
                      ++++++|++|++|||+++++|++ ||+|+||+||+|+++|+||+|.++.                               
T Consensus       158 ~~v~l~T~~G~~lrf~~~~v~~~-gr~a~GV~gi~L~~~d~vv~~~~~~-------------------------------  205 (307)
T 1zi0_A          158 DEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRGIRLGEGDKVVSLIVPR-------------------------------  205 (307)
T ss_dssp             CEEEEEETTSEEEEEEGGGSCBC-CTTCCCEECCCCCTTCCEEEEECCC-------------------------------
T ss_pred             CEEEEEECCCEEEEEECCCCCCC-CCCCCCEEEEECCCCCEEEEEEECC-------------------------------
T ss_conf             73999983874898603300037-8888776705708999999998613-------------------------------


Q ss_pred             CCCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCEEEEEHHHCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEE
Q ss_conf             44433322222320011101256867999975993453017884866757741488760677776868999972899649
Q gi|254780182|r  774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI  853 (910)
Q Consensus       774 ~~~~~~~~~~~~~~e~~~~~~~~~~~IL~vTe~G~GKRt~~~eyr~q~RGgkGv~~ik~~~~n~~g~lv~~~~V~~~DeI  853 (910)
                                            ++.++|++|++|||||+++++||.++|||+|++++++.+++  +.++++..|.++|++
T Consensus       206 ----------------------~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~~Gv~~~k~~~~~--~~~v~~~~v~~~d~i  261 (307)
T 1zi0_A          206 ----------------------GDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQVDDCDQI  261 (307)
T ss_dssp             ----------------------SSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTT--CSEEEEEEECTTCEE
T ss_pred             ----------------------CCCEEEEEECCCEEEEECCCEEEEECCCCCCCEEEECCCCC--CCEEEEEECCCCCEE
T ss_conf             ----------------------87169987448605994021431204565571422025667--738999982899879


Q ss_pred             EEEECCCEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEEEECC
Q ss_conf             9994599899999010554451568738898089987999998356
Q gi|254780182|r  854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE  899 (910)
Q Consensus       854 lliT~~G~iiR~~v~~I~~~gR~a~GV~i~~L~~~D~Vv~va~i~~  899 (910)
                      +++|++|+++|+++++||.+||+|+||++++|+++|+|++|++|+|
T Consensus       262 ll~T~~G~~ir~~~~~i~~~gR~t~Gv~li~L~~~d~Vv~v~~v~e  307 (307)
T 1zi0_A          262 MMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAE  307 (307)
T ss_dssp             EEEESSCCEEEEEGGGSCBCCSSCCCEECSCCCTTCCEEEEEECCC
T ss_pred             EEEECCCEEEEEEHHHCCCCCCCCCCEEEEECCCCCEEEEEEECCC
T ss_conf             9991899799988546566788899879798799998999998589


No 11 
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=100.00  E-value=0  Score=595.69  Aligned_cols=312  Identities=25%  Similarity=0.456  Sum_probs=297.1

Q ss_pred             CCCCCCCCCEEEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEECCCCEEEEEECCCCEEEEECCCCCC
Q ss_conf             01014567818999079705233100000233456521100014641010113323777399995489399982000432
Q gi|254780182|r  529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI  608 (910)
Q Consensus       529 ~EdlI~~E~vvV~lS~~GyIKr~~~~~yr~Q~RggkG~~~~~~ke~D~v~~~~~~~t~d~LLfFTs~Gkvy~l~v~~IP~  608 (910)
                      .||||++|+|+|++|++|||||+|+++|++|+|||+|+.++++|++|++.+++.|+|||+||||||.|++|++++|+||+
T Consensus         1 ~EdlI~~e~v~v~lT~~GyiKR~~~~~~~~q~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~G~~y~i~v~~Ip~   80 (312)
T 1suu_A            1 MSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKD   80 (312)
T ss_dssp             -------CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC
T ss_pred             CCCCCCCCCEEEEEECCCEEEECCHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCEEEEEEEECCC
T ss_conf             96556888889999689878874079975114788873345146896799999953886389987888499988453000


Q ss_pred             CCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEECHHHHHHCCCCCEEEEEECCCCEEEEEE
Q ss_conf             24445655412454536556200256630125666871799994799189842368620477722786615898578889
Q gi|254780182|r  609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE  688 (910)
Q Consensus       609 ~sr~skG~pi~nll~l~~~E~I~ail~~~~~~~~~~~~~Lvl~Tk~G~VKkt~l~ef~~~r~~G~~aikLkegD~Li~v~  688 (910)
                      ++|+++|+||.|++++.++|+|++++++.++.   .+.||+|+|++|+|||+++++|.+.+++|+.|++|+++|++++|.
T Consensus        81 ~~~~~~G~~i~~ll~l~~~e~ii~~~~~~~~~---~~~~lvl~Tk~G~iKr~~l~~~~~~~~~g~~a~kL~~~D~lv~v~  157 (312)
T 1suu_A           81 SSRASKGQNISELINLGDQEEILTIKNSKDLT---DDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAE  157 (312)
T ss_dssp             -------CBGGGTSCCCTTCCEEEEEEESCCC---TTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEE
T ss_pred             CCCCCCCCEEEEECCCCCCCEEEECCCCCCCC---CCCEEEEEECCCCEEEEEHHHHHHHCCCCEEEECCCCCCEEEEEE
T ss_conf             57133780801333788763177603674314---301599995067155662588310140211663168997788899


Q ss_pred             ECCCCCEEEEEECCCEEEEEEHHHCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             61898269999369859997587623547866553576752899869998973366654200000122233333334555
Q gi|254780182|r  689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD  768 (910)
Q Consensus       689 ~~~~~~~Iil~T~~G~~lrF~~~evr~~~GR~a~GVkgIkL~~~D~Vv~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~  768 (910)
                      .++++++++++|++|+++||+++++|+| ||+|+||++|+|+++|+|+++.++.                          
T Consensus       158 ~~~~~~~i~i~t~~G~~lrf~~~ei~~~-gr~a~GVk~i~L~~~d~v~~~~~~~--------------------------  210 (312)
T 1suu_A          158 IVFKDEKVICLSKKGSAFIFNSRDVRLT-NRGTQGVCGMKLKEGDLFVKVLSVK--------------------------  210 (312)
T ss_dssp             EECTTCEEEEEETTSEEEEEEGGGSCBC-CTTBCCEECCCCCTTCCEEEEEECT--------------------------
T ss_pred             EECCCCEEEEECCCCCEEEEEHHCCCCC-CCCCCCCCCEEECCCCEEEEEEEEC--------------------------
T ss_conf             9079834787547870698403306545-8776782024726998599999735--------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCEEEEEHHHCCCCCCCCCCEEEEECCCCCCCCCEEEEEECC
Q ss_conf             44444444333222223200111012568679999759934530178848667577414887606777768689999728
Q gi|254780182|r  769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN  848 (910)
Q Consensus       769 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~IL~vTe~G~GKRt~~~eyr~q~RGgkGv~~ik~~~~n~~g~lv~~~~V~  848 (910)
                                                 .++++|++|++|||||+++++||.++|||+|+++|+++++ +.|.|++++.|+
T Consensus       211 ---------------------------~~~~ll~iT~~G~gKr~~~~e~~~~~Rg~~Gv~~~k~~~~-~~~~vv~~~~v~  262 (312)
T 1suu_A          211 ---------------------------ENPYLLIVSENGYGKRLNMSKISELKRGATGYTSYKKSDK-KAGSVVDAIAVS  262 (312)
T ss_dssp             ---------------------------TCSEEEEEETTSEEEEEEGGGSCBCCTTCCCEECSCTTCT-TTCSEEEEEEEC
T ss_pred             ---------------------------CCCEEEEEECCCCEEECCCHHHHCCCCCCCCEEEEEECCC-CCCCEEEEEEEC
T ss_conf             ---------------------------8862988836996698462342002557776598980478-887489999968


Q ss_pred             CCCEEEEEECCCEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEEEECC
Q ss_conf             996499994599899999010554451568738898089987999998356
Q gi|254780182|r  849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE  899 (910)
Q Consensus       849 ~~DeIlliT~~G~iiR~~v~~I~~~gR~a~GV~i~~L~~~D~Vv~va~i~~  899 (910)
                      ++|+|+++|++|+++|+++++||.+||+|+||++|+| ++|++++++++.+
T Consensus       263 ~~d~i~l~T~~g~~ir~~~~~i~~~gR~~~Gv~~~~l-~~d~~v~v~~v~~  312 (312)
T 1suu_A          263 EDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFL-DNDSLVSVSKFIK  312 (312)
T ss_dssp             TTCEEEEEETTCEEEEEEGGGSCBCCTTCCCEECSCC-SSCCEEEEEECC-
T ss_pred             CCCEEEEEECCCEEEEEEHHHCCCCCCCCCCEEEEEC-CCCCEEEEEEECC
T ss_conf             9998999958998999984354777877898488988-9997999999509


No 12 
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=100.00  E-value=0  Score=593.68  Aligned_cols=314  Identities=25%  Similarity=0.422  Sum_probs=291.7

Q ss_pred             CCCCCCEEEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCC
Q ss_conf             14567818999079705233100000233456521100014641010113323777399995489399982000432244
Q gi|254780182|r  532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP  611 (910)
Q Consensus       532 lI~~E~vvV~lS~~GyIKr~~~~~yr~Q~RggkG~~~~~~ke~D~v~~~~~~~t~d~LLfFTs~Gkvy~l~v~~IP~~sr  611 (910)
                      ||++|+|+|++|+.|||||+|+++|++|+|+|.|     +|++|++.+++.|+|||+||||||.||||+++||+||+++|
T Consensus         1 LI~~E~vvV~lS~~GyIKr~~~~~~~~~~~~~~~-----~k~~D~v~~~~~~~t~d~ll~fT~~Grvy~i~v~eiP~~~~   75 (323)
T 1wp5_A            1 MVASEDVIVTVTKDGYVKRTSLRSYAASNGQDFA-----MKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRW   75 (323)
T ss_dssp             CCSCCEEEEEEETTCEEEEEEHHHHHHTTTCCCC-----CCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred             CCCCCCEEEEEECCCEEEEEEHHHHCCCCCCCCC-----CCCCCEEEEEEEECCCCEEEEEECCCEEEEEEEEECCCCCC
T ss_conf             9888878999937985898067993114788786-----57884389999985898799993898799999052877533


Q ss_pred             CCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEECHHHHHHCCC-CCEEEEEECCCCEEEEEEEC
Q ss_conf             45655412454536556200256630125666871799994799189842368620477-72278661589857888961
Q gi|254780182|r  612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR-SGKIAMKLDSRDEILSVETC  690 (910)
Q Consensus       612 ~skG~pi~nll~l~~~E~I~ail~~~~~~~~~~~~~Lvl~Tk~G~VKkt~l~ef~~~r~-~G~~aikLkegD~Li~v~~~  690 (910)
                      +++|+||.|++++.++|+|++++++.++.   .+.||+|+|++|++||+++++|.+.++ +|+.+|+|+++|+|++|.++
T Consensus        76 ~~~G~~i~nll~l~~~e~ii~~~~~~~~~---~~~~ll~~Tk~G~iKr~~l~e~~~~~~~~g~~~i~L~~~D~l~~v~~~  152 (323)
T 1wp5_A           76 KDLGQHIANIIPIDRDEEIIKAIPINDFE---LNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLT  152 (323)
T ss_dssp             TSCCEEGGGTSCCCTTCCEEEEEEESCTT---SSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEE
T ss_pred             CCCCCCCCCCCCCCCCCCEEEECCCCCCC---CCCEEEEEECCCCEEEEEHHHHCCCCCCCHHEEEECCCCCCCCCEEEC
T ss_conf             35783121225666676356503445455---674699998888233865566101123330002433665555516843


Q ss_pred             CCCCEEEEEECCCEEEEEEHHHCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             89826999936985999758762354786655357675289986999897336665420000012223333333455544
Q gi|254780182|r  691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE  770 (910)
Q Consensus       691 ~~~~~Iil~T~~G~~lrF~~~evr~~~GR~a~GVkgIkL~~~D~Vv~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  770 (910)
                      +++++|+++|++|++|||+++++|+| ||+|+||+||+|+++|+||++.++.+                           
T Consensus       153 ~~~~~i~l~t~~G~~lrf~~~~vr~~-gr~a~GVk~i~L~~~D~vv~~~~v~~---------------------------  204 (323)
T 1wp5_A          153 DGMNELFLVTHNGYALWFDESEVSIV-GVRAAGVKGMNLKEGDYIVSGQLITS---------------------------  204 (323)
T ss_dssp             CSCSEEEEEETTSEEEEEEGGGSCBC-CSSCCCEECCCCCTTCCEEEEEEECC---------------------------
T ss_pred             CCCEEEEEEECCCEEEEECCCCCCCC-CCCCCCCCCCCCCCCCEEEEEEEEEE---------------------------
T ss_conf             89848997404982897034542346-87656730202478988999999960---------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCEEEEEHHHCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCC
Q ss_conf             44444433322222320011101256867999975993453017884866757741488760677776868999972899
Q gi|254780182|r  771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN  850 (910)
Q Consensus       771 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~IL~vTe~G~GKRt~~~eyr~q~RGgkGv~~ik~~~~n~~g~lv~~~~V~~~  850 (910)
                                               ++++||++|++|||||+++++||.++|||+|++++++.+++ ...|+++..++++
T Consensus       205 -------------------------~~~~ll~iT~~G~gKr~~~~e~~~~~Rg~kGv~~~k~~k~~-~~~v~~~~v~~~~  258 (323)
T 1wp5_A          205 -------------------------KDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKAN-PHRISGFVVAQDS  258 (323)
T ss_dssp             -------------------------TTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSS-CCCEEEEEEECTT
T ss_pred             -------------------------CCCEEEEEECCCCEEECCHHHHHHCCCCCCCEEEECCCCCC-CCEEEEEEECCCC
T ss_conf             -------------------------57269998508814751145633115578870610133567-8248899976899


Q ss_pred             CEEEEEECCCEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCC
Q ss_conf             649999459989999901055445156873889808998799999835665556655
Q gi|254780182|r  851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE  907 (910)
Q Consensus       851 DeIlliT~~G~iiR~~v~~I~~~gR~a~GV~i~~L~~~D~Vv~va~i~~~e~~de~e  907 (910)
                      |+|+++|++|+++|+++++||.+||+|+||++++|+++|+|+++++++++|.+||.+
T Consensus       259 d~i~i~T~~g~~~r~~~~~i~~~gR~~~Gv~li~l~~~d~vvsv~~v~~~d~~e~~~  315 (323)
T 1wp5_A          259 DTIYLQTEKSFIETIKVGDIRFSDRYSNGSFVLDEEENGRVISVWKVEAEDKTEKLA  315 (323)
T ss_dssp             CEEEEEETTSCEEEEEGGGSCBCCSSSCCEESSCHHHHCCEEEEEEECSSCHHHHHH
T ss_pred             CEEEEEECCCEEEEEECCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCC
T ss_conf             889999599889998700267678868887979889998999999868776641001


No 13 
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA binding, DNA topology; 1.70A {Escherichia coli}
Probab=100.00  E-value=2.3e-34  Score=324.68  Aligned_cols=189  Identities=19%  Similarity=0.316  Sum_probs=161.3

Q ss_pred             CCEEEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCC
Q ss_conf             78189990797052331000002334565211000146410101133237773999954893999820004322444565
Q gi|254780182|r  536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG  615 (910)
Q Consensus       536 E~vvV~lS~~GyIKr~~~~~yr~Q~RggkG~~~~~~ke~D~v~~~~~~~t~d~LLfFTs~Gkvy~l~v~~IP~~sr~skG  615 (910)
                      |||+|+||++||||+.        +..+...+++++|++|++.+++.|+|||+||||||.|++|++++|+||+++|++  
T Consensus         2 E~vtV~lS~~G~Ir~~--------kg~~~~~~~~~~Ke~D~~~~~~~~~t~d~ll~FTn~G~~y~~~v~~ip~~~~~~--   71 (256)
T 1zvt_A            2 EPVTIVLSQMGWVRSA--------KGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQG--   71 (256)
T ss_dssp             CEEEEEEETTSEEEEE--------ESSCCCSTTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCC--
T ss_pred             CCEEEEECCCCEEEEE--------CCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCC--
T ss_conf             8979999289738800--------488888121745788811699998589889999489879999760041112456--


Q ss_pred             CCCEEEEECCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEECHHHHHHCCCCCEEEEEECCCCEEEEEEECC-CCC
Q ss_conf             5412454536556200256630125666871799994799189842368620477722786615898578889618-982
Q gi|254780182|r  616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT-QEN  694 (910)
Q Consensus       616 ~pi~nll~l~~~E~I~ail~~~~~~~~~~~~~Lvl~Tk~G~VKkt~l~ef~~~r~~G~~aikLkegD~Li~v~~~~-~~~  694 (910)
                      +|+.+++.++.++.++.+..+      .++.|++|+|++|++||+++++|.+.+++|+.+|+|+++|+++.+..+. +++
T Consensus        72 ~~~~~~~~~~~~~~~i~~~~~------~~~~~ll~~T~~G~ikr~~l~~~~~~~~~Gk~~~~l~~~d~~i~~~~v~~~~~  145 (256)
T 1zvt_A           72 EPLTGKLTLPPGATVDHMLME------SDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASD  145 (256)
T ss_dssp             EEGGGTCCCCTTCCEEEEECC------CTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTC
T ss_pred             CCCCCCCCCCCCCCEEEEEEE------CCCCEEEEEECCCEEEEEEHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCE
T ss_conf             784443434445531345540------68842999968977999872550050235750022577883255599648854


Q ss_pred             EEEEEECCCEEEEEEHHHCCCCCCCCCCCEEEEECCC------CCEEEEEEEEC
Q ss_conf             6999936985999758762354786655357675289------98699989733
Q gi|254780182|r  695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK------GDQVISMAIVL  742 (910)
Q Consensus       695 ~Iil~T~~G~~lrF~~~evr~~~GR~a~GVkgIkL~~------~D~Vv~~~vi~  742 (910)
                      +|+++|++|++|||+.+++|.| +| ++||++|+|++      +|.|+++.++.
T Consensus       146 ~i~l~t~~G~~l~f~~~ev~~~-~r-g~Gv~~~~l~~~~~~~~dd~v~~~~v~~  197 (256)
T 1zvt_A          146 MLLAITQAGRMLMFPVSDLPQL-SK-GKGNKIINIPSAEAARGEDGLAQLYVLP  197 (256)
T ss_dssp             EEEEEETTSEEEEEEGGGSCBC-SS-BSCEESSCCCHHHHHTTSSCEEEEEEEC
T ss_pred             EEEEECCCCCEEEEEHHHCCCC-CC-CCCCCCEEECCCCCCCCCCEEEEEEEEC
T ss_conf             9999868992898566884424-58-8884247106422456774799988858


No 14 
>3ku8_A GYRA14, DNA gyrase subunit A; alpha+beta, SH3 domain, topoisomerase, toxin-isomerase compl; HET: DNA; 1.93A {Escherichia coli} PDB: 1x75_A* 3kua_A*
Probab=99.96  E-value=1.6e-29  Score=281.42  Aligned_cols=139  Identities=37%  Similarity=0.602  Sum_probs=127.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCC
Q ss_conf             99999999999999999999999888778999999874069999998618997898787763126978899999740221
Q gi|254780182|r  358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS  437 (910)
Q Consensus       358 L~~fi~hR~evi~rRt~~~L~ka~~R~HILeGL~~Al~nIDeVI~iIR~S~d~~eAk~~L~~~~~~~~~~~~~~~~~~~~  437 (910)
                      -..|+.||.+||+|||+|+|+||++|+||||||++|++|||+||+|||+|+|+++|+.+||++.|..+............
T Consensus        10 ~s~~l~~R~~vItRRt~f~L~Ka~eR~HILeGL~iAl~nID~VI~IIR~S~d~~eAk~~L~~~~w~~~~~~~~~~~~~~~   89 (156)
T 3ku8_A           10 HSSGLVPRGSHMTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDD   89 (156)
T ss_dssp             ------------CCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHCSSHHHHHHHHHHSCEECTTHHHHGGGSSTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCH
T ss_conf             05477776668788679779999998999999999999499999999828982689999998530202168999982330


Q ss_pred             CCCCC--------CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf             11222--------344523699999999987899998887999999899999999988753049899
Q gi|254780182|r  438 SYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR  496 (910)
Q Consensus       438 ~~~~~--------~~~~f~lSe~QA~AILdMrL~rLt~LE~~kl~~E~~eL~~~I~~l~~IL~s~~~  496 (910)
                      ...+.        ..+.|+||+.||+|||+|||||||+||+++|.+|+++|.++|++|++||+|+++
T Consensus        90 ~~~~~~~~~~~~~~~~~y~LSe~QA~AILemrL~rLT~LE~ekl~~E~~eL~~~I~~l~~IL~~~~r  156 (156)
T 3ku8_A           90 AARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADR  156 (156)
T ss_dssp             TTSCTTCCTTSEEETTEEECCHHHHHHHHTCBGGGGSHHHHHHHHHHHHHHHHHHHHHHHTCCSCC-
T ss_pred             HHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             0020002310034455453799999999996999998778999999999999999999998768888


No 15 
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=99.92  E-value=2.3e-22  Score=217.32  Aligned_cols=205  Identities=20%  Similarity=0.306  Sum_probs=180.4

Q ss_pred             CCCEEEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCC
Q ss_conf             67818999079705233100000233456521100014641010113323777399995489399982000432244456
Q gi|254780182|r  535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR  614 (910)
Q Consensus       535 ~E~vvV~lS~~GyIKr~~~~~yr~Q~RggkG~~~~~~ke~D~v~~~~~~~t~d~LLfFTs~Gkvy~l~v~~IP~~sr~sk  614 (910)
                      +...+|.+|++|+|||++++.|...++  +|...++++++|.+..+..|...+.+++.|+.|++......++|..+|+++
T Consensus       112 ~~~~lv~~T~~G~iKr~~l~~f~~~~~--~g~~aikLk~~Delv~v~~~~~~~~i~l~T~~G~~lrf~~~~v~~~gr~a~  189 (370)
T 3l6v_A          112 DNRYVFMATRNGTVKKTPLSEFAFRLA--RGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTAT  189 (370)
T ss_dssp             TTCEEEEEETTSEEEEEEGGGGCSCCT--TCEESSCCCTTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCC
T ss_pred             CCCEEEEEECCCCEEECCHHHHHHCCC--CCCEEEECCCCCEEEEEEEECCCEEEEEEECCCEEEEEEECEECCCCCCCC
T ss_conf             776699997898589665799411133--540789848998799789745981399993165189986011323687656


Q ss_pred             CCCCEEEEECCCCCCEEEEEEECCCC-----------------------------CCCCCCEEEEEECCCCEEEECHHHH
Q ss_conf             55412454536556200256630125-----------------------------6668717999947991898423686
Q gi|254780182|r  615 GKALINILSLNQGERITTIMPFPEDE-----------------------------SSWNNLYVVFATKHGNVRRNKLSDF  665 (910)
Q Consensus       615 G~pi~nll~l~~~E~I~ail~~~~~~-----------------------------~~~~~~~Lvl~Tk~G~VKkt~l~ef  665 (910)
                      |...   +.|.++++|+++..+....                             ...+..|++++|++|++||+++++|
T Consensus       190 GVk~---i~L~~~d~vv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~vT~~G~~Kr~~~~e~  266 (370)
T 3l6v_A          190 GVRG---IRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEY  266 (370)
T ss_dssp             CEEC---CCCCTTCCEEEEEEECCC-----------------------------------CEEEEEETTSEEEEEEGGGS
T ss_pred             CEEE---EEECCCCEEEEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEECCHHHC
T ss_conf             4366---7708999899989641555432110022001100134544310000013678507999716884276777765


Q ss_pred             HHCC--CCCEEEEEEC-CCCEEEEEEECCCCCEEEEEECCCEEEEEEHHHCCCCCCCCCCCEEEEECCCCCEEEEEEEEC
Q ss_conf             2047--7722786615-898578889618982699993698599975876235478665535767528998699989733
Q gi|254780182|r  666 IQIN--RSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL  742 (910)
Q Consensus       666 ~~~r--~~G~~aikLk-egD~Li~v~~~~~~~~Iil~T~~G~~lrF~~~evr~~~GR~a~GVkgIkL~~~D~Vv~~~vi~  742 (910)
                      ...+  ..|.+++++. ++|+|+++..+.++++|+++|+.|+++||+.+++|. +||+|+||++|+|+++|+|+++..++
T Consensus       267 ~~~~Rg~~G~~~~k~~~~~d~lv~~~~v~~~d~ill~T~~G~~~r~~~~~I~~-~gR~t~Gv~~i~L~~~d~v~sv~~v~  345 (370)
T 3l6v_A          267 PRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRGSEISR-VGRNTQGVTLIRLSKGEKLQAVERLD  345 (370)
T ss_dssp             CCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEEGGGSCB-CCSSSCCEESSCCCTTCCEEEEEEEC
T ss_pred             CCCCCCCCCEEEEEECCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCCC-CCCCCCCEEEEECCCCCEEEEEEECC
T ss_conf             73358866516668747873499999926997599995899899989345476-78878984768889999999999816


Q ss_pred             CCC
Q ss_conf             666
Q gi|254780182|r  743 HAD  745 (910)
Q Consensus       743 ~~~  745 (910)
                      ...
T Consensus       346 ~~~  348 (370)
T 3l6v_A          346 ASL  348 (370)
T ss_dssp             CCC
T ss_pred             CCC
T ss_conf             656


No 16 
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=99.91  E-value=9.6e-22  Score=211.72  Aligned_cols=196  Identities=22%  Similarity=0.312  Sum_probs=82.2

Q ss_pred             CEEEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCC
Q ss_conf             81899907970523310000023345652110001464101011332377739999548939998200043224445655
Q gi|254780182|r  537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK  616 (910)
Q Consensus       537 ~vvV~lS~~GyIKr~~~~~yr~Q~RggkG~~~~~~ke~D~v~~~~~~~t~d~LLfFTs~Gkvy~l~v~~IP~~sr~skG~  616 (910)
                      ..++.+|+.|++||+++++|... |..+|...++++++|.+..++.|+..+.+++.|+.|++...+..++|..+|+++|.
T Consensus       107 ~~ll~~Tk~G~iKr~~l~e~~~~-~~~~g~~~i~L~~~D~l~~v~~~~~~~~i~l~t~~G~~lrf~~~~vr~~gr~a~GV  185 (323)
T 1wp5_A          107 GYFLFVTRNGMVKKTELKHYKAQ-RYSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGV  185 (323)
T ss_dssp             CEEEEEETTSEEEEEEGGGGCCS-CCSSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCE
T ss_pred             CEEEEEECCCCEEEEEHHHHCCC-CCCCHHEEEECCCCCCCCCEEECCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCC
T ss_conf             46999988882338655661011-23330002433665555516843898489974049828970345423468765673


Q ss_pred             CCEEEEECCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEECHHHHHHCCCC--CEEEEEEC--CCCEEEEEEECCC
Q ss_conf             4124545365562002566301256668717999947991898423686204777--22786615--8985788896189
Q gi|254780182|r  617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLD--SRDEILSVETCTQ  692 (910)
Q Consensus       617 pi~nll~l~~~E~I~ail~~~~~~~~~~~~~Lvl~Tk~G~VKkt~l~ef~~~r~~--G~~aikLk--egD~Li~v~~~~~  692 (910)
                      ..   +.|.++++|+++..+.+     ++.+|+++|++|++||+++++|...++.  |.+++++.  .++.++.+..+++
T Consensus       186 k~---i~L~~~D~vv~~~~v~~-----~~~~ll~iT~~G~gKr~~~~e~~~~~Rg~kGv~~~k~~k~~~~~v~~~~v~~~  257 (323)
T 1wp5_A          186 KG---MNLKEGDYIVSGQLITS-----KDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQD  257 (323)
T ss_dssp             EC---CCCCTTCCEEEEEEECC-----TTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECT
T ss_pred             CC---CCCCCCCEEEEEEEEEE-----CCCEEEEEECCCCEEECCHHHHHHCCCCCCCEEEECCCCCCCCEEEEEEECCC
T ss_conf             02---02478988999999960-----57269998508814751145633115578870610133567824889997689


Q ss_pred             CCEEEEEECCCEEEEEEHHHCCCCCCCCCCCEEEEECCCCCEEEEEEEEC
Q ss_conf             82699993698599975876235478665535767528998699989733
Q gi|254780182|r  693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL  742 (910)
Q Consensus       693 ~~~Iil~T~~G~~lrF~~~evr~~~GR~a~GVkgIkL~~~D~Vv~~~vi~  742 (910)
                      +++|+++|+.|+++||+.+++|. +||+|+||+.|+|+++|+|+++..+.
T Consensus       258 ~d~i~i~T~~g~~~r~~~~~i~~-~gR~~~Gv~li~l~~~d~vvsv~~v~  306 (323)
T 1wp5_A          258 SDTIYLQTEKSFIETIKVGDIRF-SDRYSNGSFVLDEEENGRVISVWKVE  306 (323)
T ss_dssp             TCEEEEEETTSCEEEEEGGGSCB-CCSSSCCEESSCHHHHCCEEEEEEEC
T ss_pred             CCEEEEEECCCEEEEEECCCCCC-CCCCCCCEEEEECCCCCEEEEEEECC
T ss_conf             98899995998899987002676-78868887979889998999999868


No 17 
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=99.91  E-value=2.7e-22  Score=216.57  Aligned_cols=40  Identities=15%  Similarity=0.233  Sum_probs=13.8

Q ss_pred             EEEEECCCCEEEEEEECCCCCEEEEEECCCEEEEEEHHHC
Q ss_conf             7866158985788896189826999936985999758762
Q gi|254780182|r  674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI  713 (910)
Q Consensus       674 ~aikLkegD~Li~v~~~~~~~~Iil~T~~G~~lrF~~~ev  713 (910)
                      .+++++++|.++.+..++..++++++|+.|++.+++..++
T Consensus        39 ~~~~~ke~D~~~~~~~~~t~d~ll~fT~~G~~y~i~v~~I   78 (312)
T 1suu_A           39 SSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEI   78 (312)
T ss_dssp             ECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGS
T ss_pred             CCCCCCCCCEEEEEEEECCCCEEEEECCCCCEEEEEEEEC
T ss_conf             3451468967999999538863899878884999884530


No 18 
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=99.91  E-value=4.2e-22  Score=214.93  Aligned_cols=189  Identities=22%  Similarity=0.350  Sum_probs=65.3

Q ss_pred             EEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf             89990797052331000002334565211000146410101133237773999954893999820004322444565541
Q gi|254780182|r  539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL  618 (910)
Q Consensus       539 vV~lS~~GyIKr~~~~~yr~Q~RggkG~~~~~~ke~D~v~~~~~~~t~d~LLfFTs~Gkvy~l~v~~IP~~sr~skG~pi  618 (910)
                      .+.+|++|+|||+++++|...++  .|...++++++|.+..+..++..+.++++|+.|++......++|..+|+++|.. 
T Consensus       112 l~~~T~~G~iKr~~l~~f~~~r~--~g~~ai~L~~~Delv~v~~~~~~~~v~l~T~~G~~lrf~~~~v~~~gr~a~GV~-  188 (307)
T 1zi0_A          112 VFMATANGTVKKTVLTEFNRLRT--AGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVR-  188 (307)
T ss_dssp             EEEEETTSEEEEEEGGGGTTCCT--TCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE-
T ss_pred             EEEEECCCCEEEEECCCCCCCCC--CCCEEEECCCCCEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCEE-
T ss_conf             99996787178730310257673--570877558999999999947997399998387489860330003788887767-


Q ss_pred             EEEEECCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEECHHHHHHCCCC--CEEEEEEC-CCCEEEEEEECCCCCE
Q ss_conf             24545365562002566301256668717999947991898423686204777--22786615-8985788896189826
Q gi|254780182|r  619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLD-SRDEILSVETCTQEND  695 (910)
Q Consensus       619 ~nll~l~~~E~I~ail~~~~~~~~~~~~~Lvl~Tk~G~VKkt~l~ef~~~r~~--G~~aikLk-egD~Li~v~~~~~~~~  695 (910)
                        -+.|.++++|+++..++      ++.+|+++|.+|++||+++++|....+.  |..++++. .++.++.+..+.+.++
T Consensus       189 --gi~L~~~d~vv~~~~~~------~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~~Gv~~~k~~~~~~~~v~~~~v~~~d~  260 (307)
T 1zi0_A          189 --GIRLGEGDKVVSLIVPR------GDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQ  260 (307)
T ss_dssp             --CCCCCTTCCEEEEECCC------SSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTCE
T ss_pred             --EEECCCCCEEEEEEECC------CCCEEEEEECCCEEEEECCCEEEEECCCCCCCEEEECCCCCCCEEEEEECCCCCE
T ss_conf             --05708999999998613------8716998744860599402143120456557142202566773899998289987


Q ss_pred             EEEEECCCEEEEEEHHHCCCCCCCCCCCEEEEECCCCCEEEEEE
Q ss_conf             99993698599975876235478665535767528998699989
Q gi|254780182|r  696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA  739 (910)
Q Consensus       696 Iil~T~~G~~lrF~~~evr~~~GR~a~GVkgIkL~~~D~Vv~~~  739 (910)
                      +++.|++|+++||+.+++|.+ ||.++||+.|+|.++|+|++++
T Consensus       261 ill~T~~G~~ir~~~~~i~~~-gR~t~Gv~li~L~~~d~Vv~v~  303 (307)
T 1zi0_A          261 IMMITDAGTLVRTRVSEISIV-GRNTQGVILIRTAEDENVVGLQ  303 (307)
T ss_dssp             EEEEESSCCEEEEEGGGSCBC-CSSCCCEECSCCCTTCCEEEEE
T ss_pred             EEEEECCCEEEEEEHHHCCCC-CCCCCCEEEEECCCCCEEEEEE
T ss_conf             999918997999885465667-8889987979879999899999


No 19 
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA binding, DNA topology; 1.70A {Escherichia coli}
Probab=99.76  E-value=4.4e-17  Score=169.96  Aligned_cols=188  Identities=16%  Similarity=0.295  Sum_probs=147.5

Q ss_pred             EEEEECCCCEEEECHHHHHHCCCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCEEEEEEHHHCCCCCCCCCCCEEE-
Q ss_conf             9999479918984236862047772278661589857888961898269999369859997587623547866553576-
Q gi|254780182|r  648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG-  726 (910)
Q Consensus       648 Lvl~Tk~G~VKkt~l~ef~~~r~~G~~aikLkegD~Li~v~~~~~~~~Iil~T~~G~~lrF~~~evr~~~GR~a~GVkg-  726 (910)
                      .|++|++|+||+..-..   .   ....+++++||.+..+..|+..++++++|+.|++..++..+++.. .+.+.|+.. 
T Consensus         5 tV~lS~~G~Ir~~kg~~---~---~~~~~~~Ke~D~~~~~~~~~t~d~ll~FTn~G~~y~~~v~~ip~~-~~~~~~~~~~   77 (256)
T 1zvt_A            5 TIVLSQMGWVRSAKGHD---I---DAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA-RGQGEPLTGK   77 (256)
T ss_dssp             EEEEETTSEEEEEESSC---C---CSTTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCS-SSCCEEGGGT
T ss_pred             EEEECCCCEEEEECCCC---C---CCCCCCCCCCCEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCC-CCCCCCCCCC
T ss_conf             99992897388004888---8---812174578881169999858988999948987999976004111-2456784443


Q ss_pred             EECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEECC
Q ss_conf             75289986999897336665420000012223333333455544444444333222223200111012568679999759
Q gi|254780182|r  727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK  806 (910)
Q Consensus       727 IkL~~~D~Vv~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~IL~vTe~  806 (910)
                      ..+..++.++++...                                                     .++.++|++|++
T Consensus        78 ~~~~~~~~~i~~~~~-----------------------------------------------------~~~~~ll~~T~~  104 (256)
T 1zvt_A           78 LTLPPGATVDHMLME-----------------------------------------------------SDDQKLLMASDA  104 (256)
T ss_dssp             CCCCTTCCEEEEECC-----------------------------------------------------CTTCEEEEEBTT
T ss_pred             CCCCCCCCEEEEEEE-----------------------------------------------------CCCCEEEEEECC
T ss_conf             434445531345540-----------------------------------------------------688429999689


Q ss_pred             CCEEEEEHHHCCCCCCCCCCEEEEECCCCCCCCCEEEEEEC-CCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCEEEEE
Q ss_conf             93453017884866757741488760677776868999972-89964999945998999990105544515687388980
Q gi|254780182|r  807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV-NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST  885 (910)
Q Consensus       807 G~GKRt~~~eyr~q~RGgkGv~~ik~~~~n~~g~lv~~~~V-~~~DeIlliT~~G~iiR~~v~~I~~~gR~a~GV~i~~L  885 (910)
                      ||+|||++++|..++|+|+..  |++.+.   +.++.+..+ ..+++|+++|++|+++|++++++|+++| ++||++|++
T Consensus       105 G~ikr~~l~~~~~~~~~Gk~~--~~l~~~---d~~i~~~~v~~~~~~i~l~t~~G~~l~f~~~ev~~~~r-g~Gv~~~~l  178 (256)
T 1zvt_A          105 GYGFVCTFNDLVARNRAGKAL--ITLPEN---AHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINI  178 (256)
T ss_dssp             SEEEEEEGGGGCCCSTTCEEC--BCCCTT---CCBCCCEECCCTTCEEEEEETTSEEEEEEGGGSCBCSS-BSCEESSCC
T ss_pred             CEEEEEEHHHHCCCCCCCCCC--CCCCCC---CCEEEEEEECCCCEEEEEECCCCCEEEEEHHHCCCCCC-CCCCCCEEE
T ss_conf             779998725500502357500--225778---83255599648854999986899289856688442458-888424710


Q ss_pred             CC------CCEEEEEEEECCCC
Q ss_conf             89------98799999835665
Q gi|254780182|r  886 AK------DERVVSVERIRESE  901 (910)
Q Consensus       886 ~~------~D~Vv~va~i~~~e  901 (910)
                      .+      +|.|+.+..+++++
T Consensus       179 ~~~~~~~~dd~v~~~~v~~~~~  200 (256)
T 1zvt_A          179 PSAEAARGEDGLAQLYVLPPQS  200 (256)
T ss_dssp             CHHHHHTTSSCEEEEEEEC-CC
T ss_pred             CCCCCCCCCCEEEEEEEECCCC
T ss_conf             6422456774799988858997


No 20 
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA binding, DNA topology; 3.00A {Escherichia coli}
Probab=99.74  E-value=5.3e-17  Score=169.24  Aligned_cols=234  Identities=15%  Similarity=0.229  Sum_probs=160.0

Q ss_pred             CCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEECHHHH
Q ss_conf             77399995489399982000432244456554124545365562002566301256668717999947991898423686
Q gi|254780182|r  586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF  665 (910)
Q Consensus       586 ~d~LLfFTs~Gkvy~l~v~~IP~~sr~skG~pi~nll~l~~~E~I~ail~~~~~~~~~~~~~Lvl~Tk~G~VKkt~l~ef  665 (910)
                      .+-++.+|..|-+-..+.+.....     |      ++..++..+..++..      ....+|+|+|.+|.+......+.
T Consensus       472 e~v~V~ls~~GyIkr~~~~~~~~~-----~------~~~k~~D~~~~~~~~------~t~d~ll~fT~~Grvy~l~v~~l  534 (716)
T 1zvu_A          472 EPVTIVLSQMGWVRSAKGHDIDAP-----G------LNYKAGDSFKAAVKG------KSNQPVVFVDSTGRSYAIDPITL  534 (716)
T ss_dssp             CCCCEEEETTTEEEECCC--------------------------CCEEECC------CSSSCEEEEETTSEEEEECTTTS
T ss_pred             CCEEEEECCCCEEEECCCCCCCCC-----C------CCCCCCCCCEEEEEE------ECCCCEEEECCCCCEEEEEEEEC
T ss_conf             650688636876862367765544-----5------423236653478997------15764068835882799741457


Q ss_pred             HHCCCCCEE---EEEECCCCEEEEEEECCCCCEEEEEECCCEEEEEEHHHCCCCCCCCCCCEEEEECCCCCEEEEEEEEC
Q ss_conf             204777227---86615898578889618982699993698599975876235478665535767528998699989733
Q gi|254780182|r  666 IQINRSGKI---AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL  742 (910)
Q Consensus       666 ~~~r~~G~~---aikLkegD~Li~v~~~~~~~~Iil~T~~G~~lrF~~~evr~~~GR~a~GVkgIkL~~~D~Vv~~~vi~  742 (910)
                      ...+..|..   .++|+++.+++.+....++..++++|++|+.-+++.+++-.   ++..|.+.|+|++||+++++..+.
T Consensus       535 P~~~~kG~pi~~~l~l~~~E~I~~i~~~~~d~~lll~T~~G~~K~~~l~~~~~---~~k~Gk~aikLke~Deli~~~~~~  611 (716)
T 1zvu_A          535 PSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVA---RNRAGKALITLPENAHVMPPVVIE  611 (716)
T ss_dssp             CCCC---CBSTTTSCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCC---CSTTCEECBCCCTTCCBCCCEECC
T ss_pred             CCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCEEEEEHHHHCC---CCCCCCEEEEECCCCEEEEEEEEC
T ss_conf             67767886543410479998489987327886799997589589985136105---475773778768998899899965


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCEEEEEHHHCCCCCC
Q ss_conf             66654200000122233333334555444444443332222232001110125686799997599345301788486675
Q gi|254780182|r  743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR  822 (910)
Q Consensus       743 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~IL~vTe~G~GKRt~~~eyr~q~R  822 (910)
                      +                                                    ++++|+++|++|+.-|-+.++.|.++|
T Consensus       612 ~----------------------------------------------------~~d~vl~vT~~Gk~lrF~~~ev~~~gr  639 (716)
T 1zvu_A          612 D----------------------------------------------------ASDMLLAITQAGRMLMFPVSDLPQLSK  639 (716)
T ss_dssp             C----------------------------------------------------TTCEEEEEETTSEEEEEESTTSCBCSS
T ss_pred             C----------------------------------------------------CCCEEEEECCCCEEEEEEHHHCCCCCC
T ss_conf             9----------------------------------------------------998899988898299978899886575


Q ss_pred             CCCCEEEEECCCCC---CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC-CCCCCCCCCCEEEEECCCCEEE
Q ss_conf             77414887606777---7686899997289964999945998999990105-5445156873889808998799
Q gi|254780182|r  823 SGKGIRATDVSKIN---EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI-RIASRATKGVVIFSTAKDERVV  892 (910)
Q Consensus       823 GgkGv~~ik~~~~n---~~g~lv~~~~V~~~DeIlliT~~G~iiR~~v~~I-~~~gR~a~GV~i~~L~~~D~Vv  892 (910)
                       |+||+.|++.+.+   ..+.|+++..+++++.++++|.+|..-+...+.- +.+.|+++||.++.+...|++.
T Consensus       640 -g~GVkgikL~~~~~~~~~d~v~~~~v~~~~~~llv~t~~g~~k~~~~~~~~~~~~Rg~kG~~~~~~~k~D~~e  712 (716)
T 1zvu_A          640 -GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVE  712 (716)
T ss_dssp             -BSCEESSCCCHHHHHTTSSCEEEEEEECSSCCEEEEETTEEEEECHHHHTTSBCCTTSCCEECTTCCSCCEEE
T ss_pred             -CCCCCEEECCCCCCCCCCCEEEEEEEECCCCEEEEEECCCEEEECHHHHHHHCCCCCCCCCCCCCCCCCCCEE
T ss_conf             -4771207306555556785599999977998699998898078587883020178788887997776678378


No 21 
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A*
Probab=93.45  E-value=0.47  Score=26.58  Aligned_cols=34  Identities=26%  Similarity=0.288  Sum_probs=16.9

Q ss_pred             CCCCCHHHHHHH---HHHHCCCHHCCCCCCCCCCCCCCCC
Q ss_conf             688704789999---9971220111561314788708877
Q gi|254780182|r   85 YHPHGNAAIYDA---LARMAQDWSLRLLLIEGQGNFGSVD  121 (910)
Q Consensus        85 yHPHGd~siy~a---~v~maq~~~~r~plidg~GnfGs~d  121 (910)
                      |-.-||||.--|   +...+.||--=+||   .|-+=++-
T Consensus        26 ~l~EGdSA~~~~~~g~~~~~rd~~g~~pl---rGK~lN~~   62 (757)
T 3l4j_A           26 VLTEGDSALSLAVAGLAVVGRDYYGCYPL---RGKMLNVR   62 (757)
T ss_dssp             EEEEHHHHHHHHHHHHHHHCSTTEEEEEE---CSSCCCCT
T ss_pred             EEECCCCCCCCCCCCCCCCCCCCEEEEEC---CCCEEECC
T ss_conf             99657585221127653216643788533---77330014


No 22 
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=80.74  E-value=2.5  Score=20.04  Aligned_cols=24  Identities=13%  Similarity=0.174  Sum_probs=16.0

Q ss_pred             CCCCCCEEEEECCCCCEEEEEEEECC
Q ss_conf             86655357675289986999897336
Q gi|254780182|r  718 GRNSVGVRGISLAKGDQVISMAIVLH  743 (910)
Q Consensus       718 GR~a~GVkgIkL~~~D~Vv~~~vi~~  743 (910)
                      ||.++|.  +|+-.-++|--+.+..+
T Consensus       319 GkdtrGl--~RvHQF~KVE~f~~~~p  342 (501)
T 1wle_A          319 GKEPWGL--YRVHHFTKVEMFGVTGP  342 (501)
T ss_dssp             C--CCSS--SSCSEEEEEEEEEEECS
T ss_pred             CCCCCCC--EEEEECCCEEEEEEECC
T ss_conf             5677672--25662142689998368


No 23 
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=80.39  E-value=2.6  Score=19.95  Aligned_cols=47  Identities=9%  Similarity=0.021  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             878999988879999998999999999887530498999999999899999840
Q gi|254780182|r  459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL  512 (910)
Q Consensus       459 dMrL~rLt~LE~~kl~~E~~eL~~~I~~l~~IL~s~~~l~~iI~~EL~eik~ky  512 (910)
                      ...-..+..++..+|.++.++|.++|+.+++-+.       -+.+++.++.-.-
T Consensus        95 ~~~~~~~~~~~~~~Lk~~~k~Lk~~i~~le~~l~-------ele~~l~~lll~I  141 (484)
T 3lss_A           95 TLKGEQVEQLCVLQLKQLSKDLSDQVAGLAKEAQ-------QLEEERDKLMLNV  141 (484)
T ss_dssp             ----------CHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHC
T ss_conf             0000012244699999999999999999999999-------9999999999728


No 24 
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=79.27  E-value=2.3  Score=20.36  Aligned_cols=17  Identities=29%  Similarity=0.458  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHHHHCCCC
Q ss_conf             99999899999840568
Q gi|254780182|r  499 GIIKQELLSVKDELDTP  515 (910)
Q Consensus       499 ~iI~~EL~eik~kygd~  515 (910)
                      .-|..+|+.+.+.++-+
T Consensus       339 ~~i~~~Lk~lA~~~~i~  355 (444)
T 2q6t_A          339 AAISRGLKALARELGIP  355 (444)
T ss_dssp             HHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHCCE
T ss_conf             99999999999973987


No 25 
>3cnf_A VP1; cytoplasmic polyhedrosis virus, capsid protein, turret protein, polyhedrin-binding domain, guanylyltransferase domain; 3.88A {Bombyx mori cypovirus 1}
Probab=77.82  E-value=2.1  Score=20.74  Aligned_cols=81  Identities=14%  Similarity=0.182  Sum_probs=42.6

Q ss_pred             EEEECCCCEEEECHHHHHHCCCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCEEEEEEHHHCCCCCCCCCCCEEEE-
Q ss_conf             9994799189842368620477722786615898578889618982699993698599975876235478665535767-
Q gi|254780182|r  649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI-  727 (910)
Q Consensus       649 vl~Tk~G~VKkt~l~ef~~~r~~G~~aikLkegD~Li~v~~~~~~~~Iil~T~~G~~lrF~~~evr~~~GR~a~GVkgI-  727 (910)
                      ++++.+|++-.++.+.+...++.-+-.|.+-|+-  ....  ....+. .++..-+-..||.+.+-  +.|   -+++| 
T Consensus      1177 i~~~~~~~~~~~~~~~~l~~~~~~i~~i~f~D~~--~~~~--~~~~d~-~~~~~~~r~i~p~~~i~--~~~---~~r~l~ 1246 (1333)
T 3cnf_A         1177 VMTPSEGYTQHVDAESIMTAPKGKLFHLQFMDGL--LRPE--PSAFDP-PASGEDMRLIYPLQPIS--VAR---SMRAIV 1246 (1333)
T ss_pred             EEECCHHHHCCCCHHHHEECCCCEEEEEEEECCC--CCCC--CCCCCC-CCCCCEEEEEECCCHHH--HHH---HHHHHH
T ss_conf             5404556426988788600267704789974055--3688--988763-22554036760461888--999---999985


Q ss_pred             ECCCCCEEEEEE
Q ss_conf             528998699989
Q gi|254780182|r  728 SLAKGDQVISMA  739 (910)
Q Consensus       728 kL~~~D~Vv~~~  739 (910)
                      +....++-.++.
T Consensus      1247 ~~~~~~~p~~a~ 1258 (1333)
T 3cnf_A         1247 NHNEVDRPRGAV 1258 (1333)
T ss_pred             CCCCCCCCCCCC
T ss_conf             323567998787


No 26 
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=73.94  E-value=3.7  Score=18.55  Aligned_cols=52  Identities=17%  Similarity=0.300  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH---HHHHHHHHHHHHC
Q ss_conf             899998887999999899999999988753049899999---9999899999840
Q gi|254780182|r  461 RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG---IIKQELLSVKDEL  512 (910)
Q Consensus       461 rL~rLt~LE~~kl~~E~~eL~~~I~~l~~IL~s~~~l~~---iI~~EL~eik~ky  512 (910)
                      ||-+..-.-...|++|+++|..+|..|+.|-+.-+.|++   .+-.||...-+.|
T Consensus        40 RLc~qVd~t~~eLeeEI~~L~~eI~~LE~iqs~aK~LRNKA~~Le~eL~~F~~~f   94 (96)
T 1t3j_A           40 RLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENFSKQF   94 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999998899999999999999999999999999999878988999999999987


No 27 
>2vld_A NUCS, UPF0286 protein pyrab01260; endonuclease, hydrolase; 2.60A {Pyrococcus abyssi}
Probab=67.70  E-value=4.8  Score=17.50  Aligned_cols=34  Identities=15%  Similarity=0.104  Sum_probs=17.0

Q ss_pred             ECCCCEEEEEEE--CCCCCEEEEEECCCEEEEEEHH
Q ss_conf             158985788896--1898269999369859997587
Q gi|254780182|r  678 LDSRDEILSVET--CTQENDILLTTKLGQCVRFPIS  711 (910)
Q Consensus       678 LkegD~Li~v~~--~~~~~~Iil~T~~G~~lrF~~~  711 (910)
                      |.+|=.++.-..  ..|.-|++...++|....+...
T Consensus       141 i~~G~~~v~rE~~t~~G~iDll~~D~~g~~VvIElK  176 (251)
T 2vld_A          141 IEEGFKPIYREKPIRHGIVDVMGVDKDGNIVVLELK  176 (251)
T ss_dssp             TCTTCEEEEEEEEETTEEEEEEEECTTSCEEEEEEC
T ss_pred             HCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEE
T ss_conf             678978999988428896558999079999999997


No 28 
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=66.76  E-value=5  Score=17.35  Aligned_cols=20  Identities=35%  Similarity=0.398  Sum_probs=12.1

Q ss_pred             EEEECCCCCCCHHHHHHHHHH
Q ss_conf             999246443528999999999
Q gi|254780182|r  266 IVVTEIPYQVNKAAMLEKIAE  286 (910)
Q Consensus       266 ivItEiPY~vnk~~lie~Ia~  286 (910)
                      +||.- +.++.|+.+.-.++.
T Consensus       206 ~vi~a-~pg~GKT~~~~~~a~  225 (454)
T 2r6a_A          206 IIVAA-RPSVGKTAFALNIAQ  225 (454)
T ss_dssp             EEEEC-CTTSCHHHHHHHHHH
T ss_pred             EEEEE-CCCCCCHHHHHHHHH
T ss_conf             99995-677653299998997


No 29 
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus VF5}
Probab=66.50  E-value=5.1  Score=17.31  Aligned_cols=84  Identities=24%  Similarity=0.273  Sum_probs=47.0

Q ss_pred             HHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q ss_conf             999861899789878776312697889999974022111222344523699999999987-8999988879999998999
Q gi|254780182|r  401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL-RLARLTGLGRDDIRNELNS  479 (910)
Q Consensus       401 I~iIR~S~d~~eAk~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~lSe~QA~AILdM-rL~rLt~LE~~kl~~E~~e  479 (910)
                      |+.||.  +++.-+.+|-.|                         .+.+. ...+.|+++ .-+|-...+.++|+.|...
T Consensus         4 ik~iRe--n~e~v~~~l~~R-------------------------~~~~~-~~id~il~Ld~~~r~l~~e~e~Lr~erN~   55 (425)
T 2dq3_A            4 INLIRE--KPDYVKERLATR-------------------------DKELV-SLVDKVLELDKRRREIIKRLEALRSERNK   55 (425)
T ss_dssp             HHHHHH--CHHHHHHHHTTT-------------------------CGGGH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH--CHHHHHHHHHHC-------------------------CCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             788876--999999999870-------------------------99825-55999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHCCH---HHHHHHHHHHHHHHHHHC
Q ss_conf             999999887530498---999999999899999840
Q gi|254780182|r  480 LGIEIKECLDILSSR---SRLLGIIKQELLSVKDEL  512 (910)
Q Consensus       480 L~~~I~~l~~IL~s~---~~l~~iI~~EL~eik~ky  512 (910)
                      +.++|..+++--.+.   ....+.+++++.++.++.
T Consensus        56 iSKeIg~~kk~~~~~~~l~~~~~~lk~~i~~le~~~   91 (425)
T 2dq3_A           56 LSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEEL   91 (425)
T ss_dssp             HHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999998679889999999999999999999999


No 30 
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=54.82  E-value=3.8  Score=18.45  Aligned_cols=64  Identities=16%  Similarity=0.214  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC------CCCCEEECC
Q ss_conf             7899998887999999899999999988753049899999999989999984056------883310013
Q gi|254780182|r  460 LRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT------PRRTRIVEG  523 (910)
Q Consensus       460 MrL~rLt~LE~~kl~~E~~eL~~~I~~l~~IL~s~~~l~~iI~~EL~eik~kygd------~RRT~I~~~  523 (910)
                      =||..|.+....=|+.=-...+.+|..|+.|.....++..-..+|+.+|-.||..      .||..|+..
T Consensus        72 ~~l~~l~g~~sg~i~sLP~~Vr~Rv~aLk~lQ~e~~~le~kf~~Ev~~LE~KY~~~y~PLy~kR~~IV~G  141 (417)
T 2ayu_A           72 DRLGSLVGQDSGYVGGLPKNVKEKLLSLKTLQSELFEVEKEFQVEMFELENKFLQKYKPIWEQRSRIISG  141 (417)
T ss_dssp             STTTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCC
T ss_conf             9987662566446664999999999999999999999999999999999999999858399999999758


No 31 
>3h3m_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.50A {Bordetella bronchiseptica}
Probab=51.07  E-value=8.5  Score=15.28  Aligned_cols=41  Identities=17%  Similarity=0.263  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf             99999988753049899999999989999984056883310
Q gi|254780182|r  480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI  520 (910)
Q Consensus       480 L~~~I~~l~~IL~s~~~l~~iI~~EL~eik~kygd~RRT~I  520 (910)
                      ......-++.||+++.++..++...+.++...++..||..=
T Consensus        74 ~~~k~~lL~~IL~nDaeIR~Ll~prldeL~~l~~~~~rq~~  114 (126)
T 3h3m_A           74 RGMKFDLLVRILENDAAVRDLALPQLARLSDLLGRMKRQQS  114 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999986999999999999999999988888789


No 32 
>3gc3_B Arrestin beta-1, clathrin heavy chain 1; protein-protein complex, alternative splicing, phosphoprotein, sensory transduction, acetylation, coated PIT; 2.20A {Bos taurus} PDB: 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=49.40  E-value=9  Score=15.08  Aligned_cols=66  Identities=20%  Similarity=0.209  Sum_probs=42.1

Q ss_pred             CCCCEEEEEECCCCEEEEEHHHCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf             56867999975993453017884866757741488760677776868999972899649999459989999901055
Q gi|254780182|r  795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR  871 (910)
Q Consensus       795 ~~~~~IL~vTe~G~GKRt~~~eyr~q~RGgkGv~~ik~~~~n~~g~lv~~~~V~~~DeIlliT~~G~iiR~~v~~I~  871 (910)
                      .+...|+++|..||.-.-.+..=       .=+-.-+++.    +.+-.+..-+...-++.++.+|+++.+.+++-.
T Consensus       268 ~kygviyviTK~G~i~lyDleTg-------t~i~~nrIs~----~~iF~~a~~~~~~Gi~~Vnr~GqVl~v~vn~~~  333 (363)
T 3gc3_B          268 EKHDVVFLITKYGYIHLYDLETG-------TCIYMNRISG----ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN  333 (363)
T ss_dssp             TTTTEEEEEETTSEEEEEETTTC-------CEEEEEECCS----SCEEEEEEEGGGTEEEEEETTSEEEEEEECTTT
T ss_pred             CCCCEEEEEECCCEEEEEECCCC-------EEEEEEECCC----CCEEEEECCCCCCCEEEECCCCEEEEEEECHHH
T ss_conf             66688999946758999985766-------2788863478----854895156898728999379779999988132


No 33 
>1b4u_A LIGA, LIGB, protocatechuate 4,5-dioxygenase; extradiol type dioxygenase, non-heme iron protein; HET: DHB; 2.20A {Sphingomonas paucimobilis} SCOP: a.88.1.1 PDB: 1bou_A
Probab=47.60  E-value=9.5  Score=14.86  Aligned_cols=25  Identities=16%  Similarity=0.207  Sum_probs=21.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2369999999998789999888799
Q gi|254780182|r  447 MYLSEVQTRAILELRLARLTGLGRD  471 (910)
Q Consensus       447 f~lSe~QA~AILdMrL~rLt~LE~~  471 (910)
                      |+||++|-+||++.-..+|-.|.-+
T Consensus        64 ~~LTeEqr~AV~~rD~~~Li~lGgN   88 (139)
T 1b4u_A           64 WNLTPAAKAAVLARDYNAMIDEGGN   88 (139)
T ss_dssp             TTCCHHHHHHHHHTCHHHHHHTTCC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf             7999999999982019999993781


No 34 
>2qzb_A Uncharacterized protein YFEY; structural genomics, unknown function, PSI-2, protein structure initiative; 2.10A {Escherichia coli K12}
Probab=46.89  E-value=2.4  Score=20.27  Aligned_cols=54  Identities=19%  Similarity=0.258  Sum_probs=25.0

Q ss_pred             CCCCCCCCCHHEEEEEECCCCEE--EEEECCCCEEEEEC--CCCCCCCCCCCCCCCEEE
Q ss_conf             10001464101011332377739--99954893999820--004322444565541245
Q gi|254780182|r  567 SGVVMRDEDFVTDLFIVSTHTSV--LFFSSLGFVYKEKV--WRLPIGSPQARGKALINI  621 (910)
Q Consensus       567 ~~~~~ke~D~v~~~~~~~t~d~L--LfFTs~Gkvy~l~v--~~IP~~sr~skG~pi~nl  621 (910)
                      +||.+.+++.+.. |.+...|.+  .++.++|.|-.+.+  .+|+......-|+|...+
T Consensus        47 sGM~t~nG~~v~~-~qa~~~d~v~lvi~G~~G~V~rI~V~d~~i~t~~G~~IGtpFsdl  104 (166)
T 2qzb_A           47 SGMKTANGNVVRF-FEVMKGDNVAMVINGDQGTISRIDVLDSDIPADTGVKIGTPFSDL  104 (166)
T ss_dssp             EEEEEETTEEEEE-EEEEETTEEEEEEEC--CBCCEEEECCTTCCBTTSCCTTCBHHHH
T ss_pred             CCCCCCCCCEEEE-EEEECCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCHHHH
T ss_conf             3665689987999-875359947899968997189899858876788767748567776


No 35 
>1io1_A Phase 1 flagellin; beta-folium, structural protein; 2.00A {Salmonella typhimurium} SCOP: e.32.1.1
Probab=46.59  E-value=9.8  Score=14.74  Aligned_cols=61  Identities=23%  Similarity=0.272  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-
Q ss_conf             9999998740699999986189978987877631269788999997402211122234452369999999998789999-
Q gi|254780182|r  387 LVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL-  465 (910)
Q Consensus       387 LeGL~~Al~nIDeVI~iIR~S~d~~eAk~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~lSe~QA~AILdMrL~rL-  465 (910)
                      +-||-.|..|+..-|.+++-++..      |-+                                  +.-||. |+|-| 
T Consensus         5 i~gl~qa~~N~~d~~s~~qtae~a------l~e----------------------------------~~~iL~-r~reLa   43 (398)
T 1io1_A            5 IKGLTQASRNANDGISIAQTTEGA------LNE----------------------------------INNNLQ-RVRELA   43 (398)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHH------HHH----------------------------------HHHHHH-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH------HHH----------------------------------HHHHHH-HHHHHH
T ss_conf             655999999999999999999999------999----------------------------------999999-999999


Q ss_pred             --------HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             --------88879999998999999999887
Q gi|254780182|r  466 --------TGLGRDDIRNELNSLGIEIKECL  488 (910)
Q Consensus       466 --------t~LE~~kl~~E~~eL~~~I~~l~  488 (910)
                              +.-+|..|+.|+++|.++|..+-
T Consensus        44 vqaan~t~t~~dr~ai~~E~~~L~~ei~~ia   74 (398)
T 1io1_A           44 VQSANSTNSQSDLDSIQAEITQRLNEIDRVS   74 (398)
T ss_dssp             HHHTCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9861468999999999999999999999999


No 36 
>1ses_A Seryl-tRNA synthetase; ligase(synthetase); HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=45.98  E-value=10  Score=14.67  Aligned_cols=55  Identities=20%  Similarity=0.381  Sum_probs=27.2

Q ss_pred             HHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q ss_conf             999861899789878776312697889999974022111222344523699999999987--899998887999999899
Q gi|254780182|r  401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL--RLARLTGLGRDDIRNELN  478 (910)
Q Consensus       401 I~iIR~S~d~~eAk~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~lSe~QA~AILdM--rL~rLt~LE~~kl~~E~~  478 (910)
                      |+.||+  |++.-+++|-.|.                         +.++   .+.|+++  +.|.| ..+.+.+++|..
T Consensus         4 ik~iR~--n~e~v~~~l~~R~-------------------------~~~d---ld~ll~Ld~~~r~l-~~~~e~l~~~rN   52 (421)
T 1ses_A            4 LKRLRQ--EPEVFHRAIREKG-------------------------VALD---LEALLALDREVQEL-KKRLQEVQTERN   52 (421)
T ss_dssp             HHHHHH--CHHHHHHHHHHHT-------------------------CCCC---HHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred             HHHHHH--CHHHHHHHHHHCC-------------------------CCCC---HHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_conf             788875--9999999998659-------------------------9706---89999999999999-999999999999


Q ss_pred             HHHHHHHH
Q ss_conf             99999998
Q gi|254780182|r  479 SLGIEIKE  486 (910)
Q Consensus       479 eL~~~I~~  486 (910)
                      .+.++|..
T Consensus        53 ~lSK~I~k   60 (421)
T 1ses_A           53 QVAKRVPK   60 (421)
T ss_dssp             HHHHHSSS
T ss_pred             HHHHHHHH
T ss_conf             99999753


No 37 
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=44.96  E-value=10  Score=14.55  Aligned_cols=60  Identities=13%  Similarity=0.193  Sum_probs=28.4

Q ss_pred             EEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCE-EEEEEECCCCCHHHHHHH
Q ss_conf             599992464435289999999999871665014458730374655-799994798877899999
Q gi|254780182|r  264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY-RVVIELKRGASADVILNQ  326 (910)
Q Consensus       264 ~~ivItEiPY~vnk~~lie~Ia~lv~~~ki~gI~dirDeSdr~gi-RivielKr~~~~~~vln~  326 (910)
                      ..|.|..||+.++...|.+--.   .-+.+.-+.=++|..+...- -..|+.....+++..++.
T Consensus        89 ~~i~v~nl~~~~~~~~i~~~f~---~~G~i~~~~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~  149 (167)
T 1fxl_A           89 ANLYVSGLPKTMTQKELEQLFS---QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG  149 (167)
T ss_dssp             CEEEEESCCTTCCHHHHHHHHG---GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCCHHHHHHHHH---HCCCCCEEEEEECCCCCCCCCCEEEEECCHHHHHHHHHH
T ss_conf             6799947778799999999998---759824278840488898578569997999999999999


No 38 
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A*
Probab=43.30  E-value=11  Score=14.35  Aligned_cols=24  Identities=17%  Similarity=0.343  Sum_probs=11.1

Q ss_pred             HHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf             988753049899999999989999
Q gi|254780182|r  485 KECLDILSSRSRLLGIIKQELLSV  508 (910)
Q Consensus       485 ~~l~~IL~s~~~l~~iI~~EL~ei  508 (910)
                      +.+-.+||+++..+.-+...|..-
T Consensus       178 ~KF~~lLNeKK~KIR~lq~~L~~a  201 (213)
T 1ik9_A          178 KRFILVLNEKKTKIRSLHNKLLNA  201 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999988999999999999987


No 39 
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=42.45  E-value=11  Score=14.25  Aligned_cols=20  Identities=10%  Similarity=0.041  Sum_probs=12.2

Q ss_pred             EEEECCCCCEEEEEEEECCC
Q ss_conf             76752899869998973366
Q gi|254780182|r  725 RGISLAKGDQVISMAIVLHA  744 (910)
Q Consensus       725 kgIkL~~~D~Vv~~~vi~~~  744 (910)
                      |.+=-+++.+|+|+.++...
T Consensus       372 kli~~~~~~~ilG~~~~g~~  391 (452)
T 3oc4_A          372 KLIYDKVTQRVLGAQLCSKN  391 (452)
T ss_dssp             EEEEETTTCBEEEEEEEESS
T ss_pred             EEEEECCCCEEEEEEEECCC
T ss_conf             99999998989969999888


No 40 
>3nkz_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MC midwest center for structural genomics; HET: MSE PG4; 2.11A {Yersinia enterocolitica subsp}
Probab=41.82  E-value=11  Score=14.18  Aligned_cols=57  Identities=11%  Similarity=0.148  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEE-ECCCCCCCCCCCCCCCC
Q ss_conf             9999988753049899999999989999984056883310-01343453010145678
Q gi|254780182|r  481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVRED  537 (910)
Q Consensus       481 ~~~I~~l~~IL~s~~~l~~iI~~EL~eik~kygd~RRT~I-~~~~~~i~~EdlI~~E~  537 (910)
                      .....-++.||+++..+..++...+.++.+..+.-||..- ...-+.+....+.|.|+
T Consensus        65 ~~~~~lL~~IL~ndaeIr~Ll~~rmd~L~~li~q~~~q~~l~~aYgqf~~~~l~~~~~  122 (123)
T 3nkz_A           65 DLLREKLRAILDNEIEIKRLLQLRLDRLSDLVGQSTKQQAVNNTYGQFPDHALLLGET  122 (123)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             9999999999967999999999999999999998887789998885789985789999


No 41 
>1b79_A DNAB helicase; hexamer, DNA replication, hydrolase; 2.30A {Escherichia coli} SCOP: a.81.1.1 PDB: 1jwe_A
Probab=40.92  E-value=12  Score=14.07  Aligned_cols=36  Identities=17%  Similarity=0.284  Sum_probs=20.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCC
Q ss_conf             7898547899999988761877688888863458668
Q gi|254780182|r  189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDF  225 (910)
Q Consensus       189 nippHNl~Ev~~a~~~~i~~p~~~~~eL~~~i~GPDF  225 (910)
                      +.||||+--=-.-+-+++-+|++ .+++..+++.-||
T Consensus        15 r~pP~~~eAE~~vLG~lL~~p~~-~~~v~~~l~~edF   50 (119)
T 1b79_A           15 KVPPHSIEAEQSVLGGLMLDNER-WDDVAERVVADDF   50 (119)
T ss_dssp             --CCCHHHHHHHHHHHHHHCGGG-HHHHHTTCCGGGS
T ss_pred             CCCCCCHHHHHHHHHHHHCCCCH-HHHHHHCCCHHHC
T ss_conf             79999889999999999918518-9999960499871


No 42 
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic gene regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=40.14  E-value=8.2  Score=15.45  Aligned_cols=39  Identities=18%  Similarity=0.273  Sum_probs=31.0

Q ss_pred             HHHHHCCCCCC---CHHHHHHHHHHHCCCHHCCCCCCCCCCCCC
Q ss_conf             55664366887---047899999971220111561314788708
Q gi|254780182|r   78 SGEVMGKYHPH---GNAAIYDALARMAQDWSLRLLLIEGQGNFG  118 (910)
Q Consensus        78 vg~v~gkyHPH---Gd~siy~a~v~maq~~~~r~plidg~GnfG  118 (910)
                      |+|+|-+  |-   .|++|+||+-.|.+.---..|.+|..|.|.
T Consensus        19 v~dims~--pv~V~~~~tv~ea~~~m~~~~~~~l~Vvd~~~~~~   60 (159)
T 3fv6_A           19 VKDFQSI--PVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLV   60 (159)
T ss_dssp             GGGSCBC--CCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEE
T ss_pred             HHHHCCC--CEEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEE
T ss_conf             9995789--95999929799999999974996899996997399


No 43 
>2ob9_A Tail assembly chaperone; bacteriophage HK97, morphogenesis; 2.30A {Enterobacteria phage HK97}
Probab=37.46  E-value=13  Score=13.66  Aligned_cols=29  Identities=21%  Similarity=0.230  Sum_probs=16.9

Q ss_pred             CCCCHHHHHHHHHHHHCCCCCCCCEEEEH
Q ss_conf             08973678999999987899999811340
Q gi|254780182|r   47 DGLKPVHRRILFGMMQMGVEWNKKYVKCA   75 (910)
Q Consensus        47 DGlKpv~Rrily~m~~~~~~~~~~~~K~a   75 (910)
                      .-.-|||-|+|-..-+|+....-.-+|||
T Consensus        99 ~~YGPVH~Rll~qALeL~~~~~daek~s~  127 (130)
T 2ob9_A           99 EIYGPVHSRLLKQALDLINNADEAREKSQ  127 (130)
T ss_dssp             TTCCHHHHHHHHHHHTTTC----------
T ss_pred             HHHCHHHHHHHHHHHHHCCCHHHHHCCCC
T ss_conf             98640999999999981487888723468


No 44 
>3glc_A Aldolase LSRF; TIM barrel, cytoplasm, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli k-12} PDB: 3gnd_A* 3gkf_O
Probab=37.32  E-value=13  Score=13.64  Aligned_cols=22  Identities=9%  Similarity=0.244  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             6999999861899789878776
Q gi|254780182|r  397 LDEVVRIIRFSPNPETARRELM  418 (910)
Q Consensus       397 IDeVI~iIR~S~d~~eAk~~L~  418 (910)
                      +..+-+||-...+++||-+-+.
T Consensus       270 ~~ai~~iVH~~~s~eeA~~l~~  291 (295)
T 3glc_A          270 MKAVQAVVHHNETADRAYELYL  291 (295)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCHHHHHHHHH
T ss_conf             9999999828999999999987


No 45 
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila str} PDB: 3fxe_A
Probab=36.83  E-value=13  Score=13.74  Aligned_cols=45  Identities=27%  Similarity=0.369  Sum_probs=29.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             3699999999987899998887999999899999999988753049899999999989999984056
Q gi|254780182|r  448 YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT  514 (910)
Q Consensus       448 ~lSe~QA~AILdMrL~rLt~LE~~kl~~E~~eL~~~I~~l~~IL~s~~~l~~iI~~EL~eik~kygd  514 (910)
                      .||+.|++|||.-                   |-+-|+   .===.++.-+.+|-+-|.+|++.|..
T Consensus         4 ~l~~eq~~aILka-------------------LdeaIe---~GPWe~SnFLRvIGKnL~eIRd~F~~   48 (57)
T 3fxd_A            4 QLSDEQKETILKA-------------------LNDAIE---KGPWDKSNFLRVIGKKLIAIRDRFLK   48 (57)
T ss_dssp             CCCHHHHHHHHHH-------------------HHHHHH---HSCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-------------------HHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             4329999999999-------------------999998---29834888999998889999999999


No 46 
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=36.68  E-value=13  Score=13.56  Aligned_cols=85  Identities=21%  Similarity=0.241  Sum_probs=44.7

Q ss_pred             HHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q ss_conf             99986189978987877631269788999997402211122234452369999999998789-99988879999998999
Q gi|254780182|r  401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRL-ARLTGLGRDDIRNELNS  479 (910)
Q Consensus       401 I~iIR~S~d~~eAk~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~lSe~QA~AILdMrL-~rLt~LE~~kl~~E~~e  479 (910)
                      |+.||.  |++..+.+|..|.                         +..+....+.|+++-- +|-...+.+.+++|...
T Consensus         4 ik~iRe--npe~v~~~l~~R~-------------------------~~~d~~~vd~ll~ld~~~r~l~~e~e~Lr~~rN~   56 (455)
T 2dq0_A            4 IKLIRE--NPELVKNDLIKRG-------------------------ELEKVKWVDEILKLDTEWRTKLKEINRLRHERNK   56 (455)
T ss_dssp             HHHHHH--CHHHHHHHHHHHT-------------------------CGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH--CHHHHHHHHHHCC-------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             788776--9999999998649-------------------------9631557999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHCCHHH---HHHHHHHHHHHHHHHC
Q ss_conf             99999988753049899---9999999899999840
Q gi|254780182|r  480 LGIEIKECLDILSSRSR---LLGIIKQELLSVKDEL  512 (910)
Q Consensus       480 L~~~I~~l~~IL~s~~~---l~~iI~~EL~eik~ky  512 (910)
                      +.++|..+++--.+.+.   ..+-|++++.++.+++
T Consensus        57 lSK~Ig~~kk~~~~~~~l~~~~~~lk~~ik~le~~l   92 (455)
T 2dq0_A           57 IAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEV   92 (455)
T ss_dssp             HHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999998679978999999999999999999999


No 47 
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=36.31  E-value=3.3  Score=18.96  Aligned_cols=30  Identities=37%  Similarity=0.674  Sum_probs=21.3

Q ss_pred             HHCCCCCCCHHHHHHHHHHHCCCHH-CCCCCC--CCCCCCCCC
Q ss_conf             6436688704789999997122011-156131--478870887
Q gi|254780182|r   81 VMGKYHPHGNAAIYDALARMAQDWS-LRLLLI--EGQGNFGSV  120 (910)
Q Consensus        81 v~gkyHPHGd~siy~a~v~maq~~~-~r~pli--dg~GnfGs~  120 (910)
                      +=|-|||          |.++|-|. -||-|+  -|+|.||++
T Consensus         3 ~~~~~~p----------~~~g~~~~~~rY~l~~~LG~G~fg~V   35 (373)
T 1q8y_A            3 RPGGYHP----------AFKGEPYKDARYILVRKLGWGHFSTV   35 (373)
T ss_dssp             ----CCC----------CCTTCEETTTTEEEEEEEEECSSEEE
T ss_pred             CCCCCCC----------CCCCCCCCCCCEEEEEEEEECCCEEE
T ss_conf             9898476----------47898812686799889860658499


No 48 
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=36.14  E-value=13  Score=13.50  Aligned_cols=36  Identities=22%  Similarity=0.206  Sum_probs=21.2

Q ss_pred             EHHHHCCCCCCHHHHHHHHHHHHHC--C--CCCHHHHHHH
Q ss_conf             0133178985478999999887618--7--7688888863
Q gi|254780182|r  184 VGMATNIPTHNLGEVVDGCVAVIDN--P--DIDLDALMEI  219 (910)
Q Consensus       184 vGmaTnippHNl~Ev~~a~~~~i~~--p--~~~~~eL~~~  219 (910)
                      |||-||.++-.|.-+..-+...+-.  |  ++|.++|-.|
T Consensus        14 ~GMLtN~~slpleRIh~mLkmfv~~~~~~~~~t~~eL~~F   53 (74)
T 1ldd_A           14 EGMLTNLGAMKLHKIHSFLKITVPKDWGYNRITLQQLEGY   53 (74)
T ss_dssp             HHHHHHHCSEEHHHHHHHHHHHSCGGGCCTTCCHHHHHHH
T ss_pred             HHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
T ss_conf             9999767878799999999987579999887699999999


No 49 
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=36.10  E-value=9.8  Score=14.73  Aligned_cols=29  Identities=10%  Similarity=0.062  Sum_probs=14.5

Q ss_pred             CHHHHHHHHHHHCCCHHCCCCCCCCCCCC
Q ss_conf             04789999997122011156131478870
Q gi|254780182|r   89 GNAAIYDALARMAQDWSLRLLLIEGQGNF  117 (910)
Q Consensus        89 Gd~siy~a~v~maq~~~~r~plidg~Gnf  117 (910)
                      .++++++|+-.|.+.-....|.+|++|.|
T Consensus        20 ~~~tl~~a~~~m~~~~~~~lpVvd~~~~~   48 (160)
T 2o16_A           20 RTHTLNDAKHLMEALDIRHVPIVDANKKL   48 (160)
T ss_dssp             TTSBHHHHHHHHHHHTCSEEEEECTTCBE
T ss_pred             CCCCHHHHHHHHHHCCCCEEEEEECCCCE
T ss_conf             94969999999998599889999289959


No 50 
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=35.70  E-value=14  Score=13.44  Aligned_cols=25  Identities=24%  Similarity=0.235  Sum_probs=14.2

Q ss_pred             EEECCCCCEEEEEECCCEEEEEECC
Q ss_conf             9972899649999459989999901
Q gi|254780182|r  844 VFPVNDNDQIILVSDKGTLIRVPVN  868 (910)
Q Consensus       844 ~~~V~~~DeIlliT~~G~iiR~~v~  868 (910)
                      +..+...+-++|-|+.|+++++-+.
T Consensus       394 v~~~~~~tV~flGT~~G~l~Kv~~~  418 (528)
T 3ol2_B          394 VTMEDGHTIAFLGDSQGQLHRVYLG  418 (528)
T ss_dssp             EEEETTEEEEEEEETTSEEEEEECS
T ss_pred             EECCCCEEEEEEECCCCEEEEEEEC
T ss_conf             9613887999996688359999988


No 51 
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=34.31  E-value=14  Score=13.27  Aligned_cols=48  Identities=15%  Similarity=0.132  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             799999989999999998875304989999999998999998405688
Q gi|254780182|r  469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR  516 (910)
Q Consensus       469 E~~kl~~E~~eL~~~I~~l~~IL~s~~~l~~iI~~EL~eik~kygd~R  516 (910)
                      +..+++++..++.++|.+|+..+........-+++++.++..+.-.+-
T Consensus        92 ei~~lk~~I~~~e~qI~eLq~~l~~~~~~I~~LkqkI~qLeqq~qe~~  139 (409)
T 1m1j_C           92 EIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESHCQEPC  139 (409)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             999999999999989999999998777655679999999998750112


No 52 
>3bzq_A Nitrogen regulatory protein P-II; GLNB, GLNK, signal transdu protein, nucleotide-binding, transcription; 1.40A {Mycobacterium tuberculosis H37RV} PDB: 3lf0_A*
Probab=33.87  E-value=14  Score=13.22  Aligned_cols=78  Identities=19%  Similarity=0.300  Sum_probs=45.4

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCH-HHHHHHHHHCCCEEEEEEEEEEEECCCCCEEEEE
Q ss_conf             898547899999988761877688888863458668874434475-8899998701203899998865433678459999
Q gi|254780182|r  190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV  268 (910)
Q Consensus       190 ippHNl~Ev~~a~~~~i~~p~~~~~eL~~~i~GPDFPTGG~I~~~-~~i~~~y~tGrG~i~iR~k~~ie~~~~~k~~ivI  268 (910)
                      |.||.|.+|.+|+... .-|-+|+.+    ++|         .|. .+..+.|..+.-....-.|..+        .|++
T Consensus        10 Irp~kl~~v~~AL~~~-G~~g~Tv~~----V~G---------~G~~~~~~~~~~~~~~~~~~~~k~~i--------eivv   67 (114)
T 3bzq_A           10 VKPFTLDDVKTSLEDA-GVLGMTVSE----IQG---------YGRQKGHTEVYRGAEYSVDFVPKVRI--------EVVV   67 (114)
T ss_dssp             ECGGGHHHHHHHHHHT-TCCCCEEEE----EEE---------ECC---------------CEEEEEEE--------EEEE
T ss_pred             ECHHHHHHHHHHHHHC-CCCCEEEEE----EEC---------CCCCCCCCEEECCCEEEECCCCEEEE--------EEEE
T ss_conf             8989999999999978-998599998----305---------34667860244241567311316999--------9998


Q ss_pred             ECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             2464435289999999999871665
Q gi|254780182|r  269 TEIPYQVNKAAMLEKIAELVREKRI  293 (910)
Q Consensus       269 tEiPY~vnk~~lie~Ia~lv~~~ki  293 (910)
                      .+-.    -..+++.|.+..+.+..
T Consensus        68 ~d~~----ve~vv~~I~~~a~TG~~   88 (114)
T 3bzq_A           68 DDSI----VDKVVDSIVRAARTGKI   88 (114)
T ss_dssp             ETTT----HHHHHHHHHHHHCCSST
T ss_pred             CHHH----HHHHHHHHHHHHCCCCC
T ss_conf             8799----99999999998554999


No 53 
>3a7m_A Flagellar protein FLIT; UP-DOWN helix bundle, bacterial flagellum biogenesis, chaper cytoplasm, repressor, transcription; 3.20A {Salmonella typhimurium}
Probab=33.84  E-value=15  Score=13.21  Aligned_cols=57  Identities=11%  Similarity=0.111  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEE-CCCCCCCCCCCCCCCC
Q ss_conf             99999887530498999999999899999840568833100-1343453010145678
Q gi|254780182|r  481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVRED  537 (910)
Q Consensus       481 ~~~I~~l~~IL~s~~~l~~iI~~EL~eik~kygd~RRT~I~-~~~~~i~~EdlI~~E~  537 (910)
                      .....-++.||.++.+++.++...+.++....+.-+|..-. ..-+.+.-.-+.|++|
T Consensus        62 ~~~~~lL~~IL~nd~eIr~Ll~~rmdeL~~li~~~~rq~~l~~aYg~~~g~~l~p~~p  119 (122)
T 3a7m_A           62 DMVAGYIKQTLDNEQLLKGLLQQRLDELSSLIGQSTRQKSLNNAYGRLSGMLLVPDAP  119 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCCCCC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             9999999999976999999999999999999998786689999997478871489998


No 54 
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis/exocytosis complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A
Probab=33.77  E-value=15  Score=13.20  Aligned_cols=20  Identities=15%  Similarity=0.225  Sum_probs=12.6

Q ss_pred             CCCCEEEEEECCCEEEEEEC
Q ss_conf             89964999945998999990
Q gi|254780182|r  848 NDNDQIILVSDKGTLIRVPV  867 (910)
Q Consensus       848 ~~~DeIlliT~~G~iiR~~v  867 (910)
                      .-++|++-+|++..+.|..+
T Consensus       925 ~cD~eLI~vtn~N~l~K~qA  944 (1630)
T 1xi4_A          925 QCDLELINVCNENSLFKSLS  944 (1630)
T ss_pred             CCHHHHHHHHCCCHHHHHHH
T ss_conf             88599998772344589999


No 55 
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, alternative splicing, amyloid, amyloidosis, blood coagulation, coiled coil; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=33.36  E-value=15  Score=13.15  Aligned_cols=50  Identities=10%  Similarity=0.125  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             87999999899999999988753049899999999989999984056883
Q gi|254780182|r  468 LGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR  517 (910)
Q Consensus       468 LE~~kl~~E~~eL~~~I~~l~~IL~s~~~l~~iI~~EL~eik~kygd~RR  517 (910)
                      -+..+++....++.++|..|+..+...+....-+.+++.++.++...+..
T Consensus        91 eei~~le~~i~~~e~qI~qLq~~l~~l~~~i~~lk~~I~qLeek~~~~~~  140 (411)
T 3ghg_C           91 EEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCK  140 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCCE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             99999999999888777777778899998989999999999976435555


No 56 
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=31.74  E-value=4.5  Score=17.72  Aligned_cols=18  Identities=11%  Similarity=0.051  Sum_probs=8.1

Q ss_pred             CCCCHHHHHHHCCCCCCC
Q ss_conf             776888888634586688
Q gi|254780182|r  209 PDIDLDALMEIIRGPDFP  226 (910)
Q Consensus       209 p~~~~~eL~~~i~GPDFP  226 (910)
                      ++-..+++-.|.+|==||
T Consensus        11 ~~~~~~~~~~~~~~~~~~   28 (397)
T 1wak_A           11 DDDEQEDPNDYCKGGYHL   28 (397)
T ss_dssp             -----------CC--CCS
T ss_pred             CCCCCCCCCCCCCCCCEE
T ss_conf             855566734568799612


No 57 
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* 1re4_C* 2ffd_C* ...
Probab=31.34  E-value=16  Score=12.90  Aligned_cols=34  Identities=12%  Similarity=0.185  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999999887530498999999999899999840
Q gi|254780182|r  479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL  512 (910)
Q Consensus       479 eL~~~I~~l~~IL~s~~~l~~iI~~EL~eik~ky  512 (910)
                      +...+|..|+..|...+....-+.+++.++..+-
T Consensus        15 ~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~~   48 (319)
T 1fzc_C           15 THDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQC   48 (319)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             7699999999999999999999999999999987


No 58 
>1muk_A Minor core protein lambda 3; single subunit polymerase fold, fingers, PALM, thumb, right hand configuration, viral protein; 2.50A {Reovirus SP} SCOP: e.8.1.4 PDB: 1mwh_A* 1n1h_A* 1n35_A* 1n38_A* 1uon_A* 2cse_1
Probab=31.26  E-value=13  Score=13.79  Aligned_cols=129  Identities=9%  Similarity=0.138  Sum_probs=57.0

Q ss_pred             HHHHHHHHCCCEEEEEEEEEEEECCCCCEE---EEEECCC---C---CCCHHH------------HHHHHHHHHHCCC--
Q ss_conf             899998701203899998865433678459---9992464---4---352899------------9999999987166--
Q gi|254780182|r  236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQ---IVVTEIP---Y---QVNKAA------------MLEKIAELVREKR--  292 (910)
Q Consensus       236 ~i~~~y~tGrG~i~iR~k~~ie~~~~~k~~---ivItEiP---Y---~vnk~~------------lie~Ia~lv~~~k--  292 (910)
                      .+...|++|-|.+.=+=.|.-   .+.+++   +=++.|-   +   -++-.+            ++..|....+.-.  
T Consensus       281 sLHsMYR~~~gG~~P~ieW~E---PRskY~F~~~Gv~~l~~~~~~~~p~~d~~~~~~~~~ygL~dv~~~i~~~~~~~~~H  357 (1267)
T 1muk_A          281 TLHSMYESLEGGYCPNLEWLE---PRSDYKFMYMGVMPLSAKYARSAPSNDKKARELGEKYGLSSVVGELRKRTKTYVKH  357 (1267)
T ss_dssp             TGGGCCSSCCEEEEEEEEECS---SGGGCBEEEEEEEECCGGGSCCSCCCHHHHHHHHHHTTCHHHHHHHHHHHHTCCEE
T ss_pred             HHHHHHHHCCCCCCCCEEECC---CCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHCCCCCC
T ss_conf             299998724687566113237---66554489951476354545689876378999998728699999999986047666


Q ss_pred             -CCHHHHHHHH-CCCCCEEEEEEECCCCCHHHHHHHHHHHCCHHC------CC--CC-EEEEEECCCCCCCCHHHHHHHH
Q ss_conf             -5014458730-374655799994798877899999997610110------00--00-0245541663000299999999
Q gi|254780182|r  293 -IVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQS------LF--SV-NMVALNGYKPERFTLIGILKAF  361 (910)
Q Consensus       293 -i~gI~dirDe-Sdr~giRivielKr~~~~~~vln~Lyk~T~Lq~------sf--~~-N~~aL~~g~P~~l~Lk~iL~~f  361 (910)
                       -+-+.=|||- +-..||-||    | .-.+.||.. |..||.-.      -.  .+ |.-.|.+..|  ...+-+-+.|
T Consensus       358 ~~dSvr~VRDvMa~TSg~flV----R-~pTesVL~E-YsQ~P~Ik~PIp~s~wtgpIGnvRyL~~~~~--~pa~~Ly~~W  429 (1267)
T 1muk_A          358 DFASVRYIRDAMACTSGIFLV----R-TPTETVLQE-YTQSPEIKVPIPQKDWTGPIGEIRILKDTTS--SIARYLYRTW  429 (1267)
T ss_dssp             SHHHHHHHHHHHTSSCCCBCC----C-CHHHHHHHH-SSCCCCCSSCCCGGGEEEEETTEEEECTTCC--STHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHCCCEEEE----C-CCHHHHHHH-HCCCCCCCCCCCHHHCCCCCCCEEEECCCCC--CHHHHHHHHH
T ss_conf             605889999988643641686----2-860899997-3579854588986764687663676145678--6479999999


Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             99999999999999
Q gi|254780182|r  362 VAFREEVVVRRTKY  375 (910)
Q Consensus       362 i~hR~evi~rRt~~  375 (910)
                      .+--.++..+...+
T Consensus       430 r~AA~~v~~~p~t~  443 (1267)
T 1muk_A          430 YLAAARMAAQPRTW  443 (1267)
T ss_dssp             HHHHHHHHHCGGGG
T ss_pred             HHHHHHHHHCCCCC
T ss_conf             99999997097655


No 59 
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=31.21  E-value=16  Score=12.88  Aligned_cols=81  Identities=11%  Similarity=0.130  Sum_probs=49.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH-HHHHHHHHHHCCCCCCCCEE----EEHHHHHHHHCCCCCCCHHHHH
Q ss_conf             099999876787779988631375400089736-78999999987899999811----3404255664366887047899
Q gi|254780182|r   20 SITDEMQNSYLTYAINVILGRAIPDLRDGLKPV-HRRILFGMMQMGVEWNKKYV----KCARISGEVMGKYHPHGNAAIY   94 (910)
Q Consensus        20 ~~~~~m~~syl~Ya~svI~~RAlPd~rDGlKpv-~Rrily~m~~~~~~~~~~~~----K~a~ivg~v~gkyHPHGd~siy   94 (910)
                      -|.|..+.+=...|   -|+|||=+= .+..|- .+||+-++.++|..|+..-+    +..+++|-++...+.+....++
T Consensus        12 TikdIA~~agVS~a---TVSr~Ln~~-~~vs~~tr~rV~~~a~~lgY~pn~~a~~l~~~~~~~i~~~~~~~~~~~~~~~~   87 (344)
T 3kjx_A           12 TLRDVSEASGVSEM---TVSRVLRNR-GDVSDATRARVLAAAKELGYVPNKIAGALASNRVNLVAVIIPSLSNMVFPEVL   87 (344)
T ss_dssp             CHHHHHHHHCCCSH---HHHHHHTTC-SCCCHHHHHHHHHHHHHHTCCCCCCCSCSTTSCCSEEEEEESCSSSSSHHHHH
T ss_pred             CHHHHHHHHCCCHH---HHHHHHCCC-CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEEECCCCCCCHHHHHH
T ss_conf             69999999895999---999997898-99999999999999999599748778876308751799961455672157889


Q ss_pred             HHHHHHCCCH
Q ss_conf             9999712201
Q gi|254780182|r   95 DALARMAQDW  104 (910)
Q Consensus        95 ~a~v~maq~~  104 (910)
                      ..+.+.++..
T Consensus        88 ~~~~~~~~~~   97 (344)
T 3kjx_A           88 TGINQVLEDT   97 (344)
T ss_dssp             HHHHHHHTSS
T ss_pred             HHHHHHHHHH
T ss_conf             8999999974


No 60 
>3iq1_A DPS family protein; csgid, SAD, niaid, metal transport, structural genomics; 1.67A {Vibrio cholerae o1 biovar el tor str}
Probab=30.34  E-value=6.8  Score=16.15  Aligned_cols=17  Identities=18%  Similarity=0.110  Sum_probs=9.5

Q ss_pred             HHHHHHHHHHHHHHCCC
Q ss_conf             87406999999861899
Q gi|254780182|r  393 AVANLDEVVRIIRFSPN  409 (910)
Q Consensus       393 Al~nIDeVI~iIR~S~d  409 (910)
                      +.+.+|+|.+=||.-..
T Consensus        63 ~~~~~D~iAERI~~LGg   79 (159)
T 3iq1_A           63 LQLKIDELAERILTLSA   79 (159)
T ss_dssp             HHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHCC
T ss_conf             99999999999998078


No 61 
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane protein; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=30.14  E-value=16  Score=12.74  Aligned_cols=66  Identities=20%  Similarity=0.209  Sum_probs=42.4

Q ss_pred             CCCCEEEEEECCCCEEEEEHHHCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf             56867999975993453017884866757741488760677776868999972899649999459989999901055
Q gi|254780182|r  795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR  871 (910)
Q Consensus       795 ~~~~~IL~vTe~G~GKRt~~~eyr~q~RGgkGv~~ik~~~~n~~g~lv~~~~V~~~DeIlliT~~G~iiR~~v~~I~  871 (910)
                      .....|+++|..||.-.-.+..=       .=+-.-+++.    +.+-.+..-.+..-++.++.+|+++.+.+++-.
T Consensus       268 ~kygviyviTK~G~i~lyDleTg-------t~i~~nrIs~----~~iF~~~~~~~~~Gi~~Vnr~GqVl~v~vn~~~  333 (494)
T 1bpo_A          268 EKHDVVFLITKYGYIHLYDLETG-------TCIYMNRISG----ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN  333 (494)
T ss_dssp             TTTTEEEEEETTSEEEEEETTTC-------CEEEEEECCS----SCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred             CCCCEEEEEECCCEEEEEECCCC-------CEEEEECCCC----CCEEEEECCCCCCCEEEECCCCEEEEEEECHHH
T ss_conf             55688999956748999985667-------3777730578----844895056888858999379779999987022


No 62 
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=30.11  E-value=16  Score=12.74  Aligned_cols=12  Identities=17%  Similarity=0.534  Sum_probs=4.7

Q ss_pred             CCCCCHHHHHHH
Q ss_conf             300029999999
Q gi|254780182|r  349 PERFTLIGILKA  360 (910)
Q Consensus       349 P~~l~Lk~iL~~  360 (910)
                      |..+-++.+|++
T Consensus        49 ~~~~r~q~~ie~   60 (390)
T 1deq_A           49 PSGCRMKGLIDE   60 (390)
T ss_pred             CCHHHHHHHHHH
T ss_conf             427789999999


No 63 
>3lay_A Zinc resistance-associated protein; salmonella typhimurium LT2, ZRAP, periplasm, structural genomics; 2.70A {Salmonella enterica subsp}
Probab=29.93  E-value=16  Score=12.71  Aligned_cols=65  Identities=15%  Similarity=0.113  Sum_probs=45.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             236999999999878999988879999998999999999887530498---9999999998999998405688
Q gi|254780182|r  447 MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR---SRLLGIIKQELLSVKDELDTPR  516 (910)
Q Consensus       447 f~lSe~QA~AILdMrL~rLt~LE~~kl~~E~~eL~~~I~~l~~IL~s~---~~l~~iI~~EL~eik~kygd~R  516 (910)
                      -.||++|-.++-+++=.-.     .+...-.++|.+.-.+|..++.++   .....-+.+|+.+++.+....|
T Consensus        66 ~~LT~EQq~~~~~I~~~~~-----~~~~~Lr~qL~akr~EL~aLl~~~~~D~akI~aL~~eI~~Lr~qL~~~R  133 (175)
T 3lay_A           66 SPLTTEQQATAQKIYDDYY-----TQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQR  133 (175)
T ss_dssp             --CCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8899999999999999999-----9999999999999999999971799999999999999999999999999


No 64 
>2khd_A Uncharacterized protein VC_A0919; alpha beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Vibrio cholerae o1 biovar el tor str}
Probab=28.04  E-value=15  Score=13.16  Aligned_cols=25  Identities=20%  Similarity=0.282  Sum_probs=18.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5236999999999878999988879
Q gi|254780182|r  446 TMYLSEVQTRAILELRLARLTGLGR  470 (910)
Q Consensus       446 ~f~lSe~QA~AILdMrL~rLt~LE~  470 (910)
                      .|.|+=.==.-|-+|+||.|.+||.
T Consensus        79 ~f~FscqAEkmIFQL~~Rsl~~~~~  103 (108)
T 2khd_A           79 RFKFEVSAEKLIFELKTRALARLEH  103 (108)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHHTCS
T ss_pred             EEEEEEEEEEEEEEECCCHHHHHHH
T ss_conf             9999977444655300316766530


No 65 
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=27.88  E-value=18  Score=12.44  Aligned_cols=11  Identities=18%  Similarity=0.425  Sum_probs=6.1

Q ss_pred             EEEEEHHHCCC
Q ss_conf             99975876235
Q gi|254780182|r  705 CVRFPISAIRV  715 (910)
Q Consensus       705 ~lrF~~~evr~  715 (910)
                      +..|+.++|+.
T Consensus       315 vC~fsl~~I~~  325 (495)
T 1q47_A          315 VCMYSMSDVRR  325 (495)
T ss_dssp             EEEECHHHHHH
T ss_pred             EEEEEHHHHHH
T ss_conf             99978999999


No 66 
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}
Probab=27.72  E-value=18  Score=12.42  Aligned_cols=19  Identities=11%  Similarity=-0.054  Sum_probs=11.7

Q ss_pred             EEEECCCCCEEEEEEEECC
Q ss_conf             7675289986999897336
Q gi|254780182|r  725 RGISLAKGDQVISMAIVLH  743 (910)
Q Consensus       725 kgIkL~~~D~Vv~~~vi~~  743 (910)
                      |.+==+++.+++|+.++..
T Consensus       377 Kli~~~~~~~ilG~~~~g~  395 (452)
T 2cdu_A          377 SLVYDPKTRVILGGALSSM  395 (452)
T ss_dssp             EEEECTTTCBEEEEEEEES
T ss_pred             EEEEECCCCEEEEEEEECC
T ss_conf             9999999798999999977


No 67 
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=27.55  E-value=18  Score=12.43  Aligned_cols=29  Identities=14%  Similarity=0.262  Sum_probs=11.1

Q ss_pred             CCHHHHHHHHHHHCCCHHCCCCCCCCCCC
Q ss_conf             70478999999712201115613147887
Q gi|254780182|r   88 HGNAAIYDALARMAQDWSLRLLLIEGQGN  116 (910)
Q Consensus        88 HGd~siy~a~v~maq~~~~r~plidg~Gn  116 (910)
                      |.|+++++|+-.|...--...|.+|.+|.
T Consensus        25 ~~d~~l~~a~~~m~~~~~~~lpVvd~~~~   53 (144)
T 2nyc_A           25 QMTTPVIDVIQMLTQGRVSSVPIIDENGY   53 (144)
T ss_dssp             CTTSBHHHHHHHHHHHTCSEEEEECTTCB
T ss_pred             CCCCCHHHHHHHHHHCCCCEEEEEECCCE
T ss_conf             49092999999999859948999927992


No 68 
>3dm8_A Uncharacterized protein RPA4348; siras, putative isomerase, structural genomics, PSI-2, protein structure initiative; HET: CE9; 1.80A {Rhodopseudomonas palustris} SCOP: d.17.4.20
Probab=27.16  E-value=18  Score=12.34  Aligned_cols=56  Identities=16%  Similarity=0.159  Sum_probs=38.0

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCHHHHHHH--------CC--CCCCCCCCCCCCHHHHHHHHHHCCCEEE
Q ss_conf             8547899999988761877688888863--------45--8668874434475889999870120389
Q gi|254780182|r  192 THNLGEVVDGCVAVIDNPDIDLDALMEI--------IR--GPDFPTGAVILGRTGIKNAYATGRGSIV  249 (910)
Q Consensus       192 pHNl~Ev~~a~~~~i~~p~~~~~eL~~~--------i~--GPDFPTGG~I~~~~~i~~~y~tGrG~i~  249 (910)
                      .|.+.+++.+...-++..+.  +.++..        ++  ++-+|.+|...|++++.+.++.-..++.
T Consensus         3 ~~~~~~~~r~~y~A~~~~d~--d~~~~l~~dDv~~~~~~~~~~~P~~G~~~G~~~~~~~~~~~~~~~~   68 (143)
T 3dm8_A            3 EHSLWRFSRALHRALNDRQT--EELATIIDDNIDWAIYGPIDMFPFFGARQGKAAVLEVCRQIADSVR   68 (143)
T ss_dssp             SCHHHHHHHHHHHHHHHCCC--HHHHHHEEEEEEEEEESCTTTCTTCEEEESHHHHHHHHHHHHHHEE
T ss_pred             CCHHHHHHHHHHHHHHCCCH--HHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             43699999999999864799--9999864886599946876778855415468999999988865256


No 69 
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=27.12  E-value=16  Score=12.94  Aligned_cols=22  Identities=18%  Similarity=0.412  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             9999999899999840568833
Q gi|254780182|r  497 LLGIIKQELLSVKDELDTPRRT  518 (910)
Q Consensus       497 l~~iI~~EL~eik~kygd~RRT  518 (910)
                      +..-+-.|+.+++++|..+|.-
T Consensus        22 LD~eME~EieeLr~RYq~KRqP   43 (51)
T 2jo8_A           22 LDPMMEQEIEEIRQKYQSKRQP   43 (51)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHCC
T ss_conf             6688999999999998874343


No 70 
>1o50_A CBS domain-containing predicted protein TM0935; structural genomics, JCSG, PSI, protein structure initiative; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=26.82  E-value=13  Score=13.58  Aligned_cols=42  Identities=14%  Similarity=0.343  Sum_probs=31.5

Q ss_pred             HHHHHCCCCC---CCHHHHHHHHHHHCCCHHCCCCCCCCCCCC-CCC
Q ss_conf             5566436688---704789999997122011156131478870-887
Q gi|254780182|r   78 SGEVMGKYHP---HGNAAIYDALARMAQDWSLRLLLIEGQGNF-GSV  120 (910)
Q Consensus        78 vg~v~gkyHP---HGd~siy~a~v~maq~~~~r~plidg~Gnf-Gs~  120 (910)
                      |.++| ..+|   +.|+++++|+-.|.+.-..++|.+|.+|++ |-+
T Consensus        18 v~~~m-~~~~v~v~~~~~v~ea~~~m~~~~~~~~pVvd~~~~~vG~i   63 (157)
T 1o50_A           18 VCKLI-SLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMI   63 (157)
T ss_dssp             HTTSS-CCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEE
T ss_pred             HHHHC-CCCCEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEE
T ss_conf             77648-88978999929399999999977980999992899899888


No 71 
>1l1q_A Adenine phosphoribosyltransferase; aprtase, giardia lamblia, purine metabolism, catalytic loop; HET: 9DA; 1.85A {Giardia intestinalis} SCOP: c.61.1.1 PDB: 1l1r_A*
Probab=26.51  E-value=16  Score=12.80  Aligned_cols=10  Identities=0%  Similarity=0.172  Sum_probs=3.6

Q ss_pred             CCEEEEEECC
Q ss_conf             8459999246
Q gi|254780182|r  262 DREQIVVTEI  271 (910)
Q Consensus       262 ~k~~ivItEi  271 (910)
                      |+.-++|--+
T Consensus       117 G~rVLIVDDv  126 (186)
T 1l1q_A          117 HDVVLLHDDV  126 (186)
T ss_dssp             TCCEEEEEEE
T ss_pred             CCEEEEEEEH
T ss_conf             9989999534


No 72 
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Probab=26.26  E-value=14  Score=13.35  Aligned_cols=43  Identities=12%  Similarity=0.074  Sum_probs=21.0

Q ss_pred             HHHHHCCC--CCCCHHHHHHHHHHHCCCHHCCCCCCCCCCCC-CCC
Q ss_conf             55664366--88704789999997122011156131478870-887
Q gi|254780182|r   78 SGEVMGKY--HPHGNAAIYDALARMAQDWSLRLLLIEGQGNF-GSV  120 (910)
Q Consensus        78 vg~v~gky--HPHGd~siy~a~v~maq~~~~r~plidg~Gnf-Gs~  120 (910)
                      |.|+|-+=  .=+.++++++|+-.|.+.--...|.+|..|+| |-+
T Consensus        10 v~diM~~~~~~v~~~~sv~~a~~~m~~~~~~~~~Vvd~~~~~iGii   55 (133)
T 1y5h_A           10 ARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGML   55 (133)
T ss_dssp             HHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEE
T ss_pred             HHHHCCCCCCEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEE
T ss_conf             9997689984899919199999999984998899991998398787


No 73 
>1itu_A Renal dipeptidase; glycoprotein, membrane-bound, zinc protease beta-lactamase, cilastatin, complex (hydrolase/inhibitor); HET: NAG CIL; 2.00A {Homo sapiens} SCOP: c.1.9.7 PDB: 1itq_A*
Probab=25.85  E-value=19  Score=12.16  Aligned_cols=13  Identities=15%  Similarity=0.197  Sum_probs=8.4

Q ss_pred             CCHHCCCCCCCCC
Q ss_conf             2011156131478
Q gi|254780182|r  102 QDWSLRLLLIEGQ  114 (910)
Q Consensus       102 q~~~~r~plidg~  114 (910)
                      +.-..+.|++|+|
T Consensus         8 ~~lh~~~~viD~H   20 (369)
T 1itu_A            8 ERIMRDSPVIDGH   20 (369)
T ss_dssp             HHHHTTSCEEEEE
T ss_pred             HHHHCCCCEEEEC
T ss_conf             9996489989805


No 74 
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A*
Probab=25.79  E-value=19  Score=12.15  Aligned_cols=44  Identities=20%  Similarity=0.447  Sum_probs=31.1

Q ss_pred             HHHHHHCCCCC---CCHHHHHHHHHHHCCCHHCCCCCCCCCCCC-CCCC
Q ss_conf             25566436688---704789999997122011156131478870-8877
Q gi|254780182|r   77 ISGEVMGKYHP---HGNAAIYDALARMAQDWSLRLLLIEGQGNF-GSVD  121 (910)
Q Consensus        77 ivg~v~gkyHP---HGd~siy~a~v~maq~~~~r~plidg~Gnf-Gs~d  121 (910)
                      .|+|+|-+ .|   +-++++.+|+-.|.+.-....|.+|.+|.+ |-+.
T Consensus         2 ~V~diM~~-~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~G~it   49 (122)
T 3kpb_A            2 LVKDILSK-PPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIIT   49 (122)
T ss_dssp             BHHHHCCS-CCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEEC
T ss_pred             CHHHCCCC-CCEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCEEEEEE
T ss_conf             95682889-9728989193999999999879829999908992999988


No 75 
>1tvf_A PBP4, penicillin binding protein 4; structural genomics, nysgxrc target, SAV0642, PSI, protein structure initiative; 2.00A {Staphylococcus aureus} SCOP: b.105.1.2 e.3.1.1
Probab=25.46  E-value=19  Score=12.10  Aligned_cols=11  Identities=18%  Similarity=0.468  Sum_probs=6.8

Q ss_pred             CCCCHHHHHHH
Q ss_conf             00029999999
Q gi|254780182|r  350 ERFTLIGILKA  360 (910)
Q Consensus       350 ~~l~Lk~iL~~  360 (910)
                      ..++++++|..
T Consensus       110 ~~~tv~dLL~~  120 (369)
T 1tvf_A          110 QVWTIADLLQI  120 (369)
T ss_dssp             CEEEHHHHHHH
T ss_pred             CEEEHHHHHHH
T ss_conf             79759999998


No 76 
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis}
Probab=25.24  E-value=19  Score=12.07  Aligned_cols=43  Identities=14%  Similarity=0.128  Sum_probs=24.9

Q ss_pred             HHHHHC---C-CCCCCHHHHHHHHHHHCCCHHCCCCCCCCCCCC-CCC
Q ss_conf             556643---6-688704789999997122011156131478870-887
Q gi|254780182|r   78 SGEVMG---K-YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF-GSV  120 (910)
Q Consensus        78 vg~v~g---k-yHPHGd~siy~a~v~maq~~~~r~plidg~Gnf-Gs~  120 (910)
                      |.|+|-   + ++=+-+.++.+|+-.|.+.=-.+.|.+|..|+| |-+
T Consensus        17 v~dim~p~~~v~~v~~~~~l~ea~~~m~~~~~s~~pVvd~~~~~vG~i   64 (150)
T 3lqn_A           17 VKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLI   64 (150)
T ss_dssp             HHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEE
T ss_pred             HHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEE
T ss_conf             578388776438985939699999999984993999995899799999


No 77 
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxane, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=25.08  E-value=20  Score=12.05  Aligned_cols=15  Identities=13%  Similarity=0.129  Sum_probs=5.8

Q ss_pred             EEEEEECCCEEEEEE
Q ss_conf             699993698599975
Q gi|254780182|r  695 DILLTTKLGQCVRFP  709 (910)
Q Consensus       695 ~Iil~T~~G~~lrF~  709 (910)
                      .+.+.|.+|+-+...
T Consensus        61 ~~~l~ssDg~~VtV~   75 (142)
T 2pi2_E           61 MFILSDGEGKNGTIE   75 (142)
T ss_dssp             EEEEECTTSCEEEEE
T ss_pred             EEEEECCCCCEEEEE
T ss_conf             899994999999999


No 78 
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A
Probab=24.56  E-value=20  Score=11.99  Aligned_cols=84  Identities=14%  Similarity=0.223  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH-HHHHHHHHHCCCCCCCCE----EEEHHHHHHHHCCCCCCCHHHHHH
Q ss_conf             999998767877799886313754000897367-899999998789999981----134042556643668870478999
Q gi|254780182|r   21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH-RRILFGMMQMGVEWNKKY----VKCARISGEVMGKYHPHGNAAIYD   95 (910)
Q Consensus        21 ~~~~m~~syl~Ya~svI~~RAlPd~rDGlKpv~-Rrily~m~~~~~~~~~~~----~K~a~ivg~v~gkyHPHGd~siy~   95 (910)
                      |.|..+.+  ..|.+ -|+|||=. +.+..|-- +||+=+..+||..|+..-    .+..+++|-++....-+-...++.
T Consensus         5 i~dIA~~a--GVS~~-TVSr~Ln~-~~~vs~~tr~kV~~~a~elgY~pn~~a~~l~~~~s~~I~~~~~~~~~~~~~~~~~   80 (332)
T 2hsg_A            5 IYDVAREA--SVSMA-TVSRVVNG-NPNVKPSTRKKVLETIERLGYRPNAVARGLASKKTTTVGVIIPDISNIFYAELAR   80 (332)
T ss_dssp             HHHHHHHT--TSCHH-HHHHHHTT-CTTSCHHHHHHHHHHHHHHTCCSCHHHHHHTTC-CCEEEEEEC--CCSHHHHHHH
T ss_pred             HHHHHHHH--CCCHH-HHHHHHCC-CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEEEEECCCCCHHHHHHH
T ss_conf             99999998--97999-99999789-5999999999999999996898688888764178738999840146720146788


Q ss_pred             HHHHHCCCHHCCC
Q ss_conf             9997122011156
Q gi|254780182|r   96 ALARMAQDWSLRL  108 (910)
Q Consensus        96 a~v~maq~~~~r~  108 (910)
                      ++...++......
T Consensus        81 ~~~~~~~~~g~~~   93 (332)
T 2hsg_A           81 GIEDIATMYKYNI   93 (332)
T ss_dssp             HHHHHHHHHTCEE
T ss_pred             HHHHHHHHHHHHE
T ss_conf             9999987631221


No 79 
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=24.06  E-value=18  Score=12.43  Aligned_cols=58  Identities=12%  Similarity=0.167  Sum_probs=30.3

Q ss_pred             CCEEEEEECCCCCCCHHHHHHHHHHHHHCC-CCCHHHHH---HHHCCC-CCEEEEEEECCCCCHHHHH
Q ss_conf             845999924644352899999999998716-65014458---730374-6557999947988778999
Q gi|254780182|r  262 DREQIVVTEIPYQVNKAAMLEKIAELVREK-RIVDIADL---RDESDR-QGYRVVIELKRGASADVIL  324 (910)
Q Consensus       262 ~k~~ivItEiPY~vnk~~lie~Ia~lv~~~-ki~gI~di---rDeSdr-~giRivielKr~~~~~~vl  324 (910)
                      ..+.|.|.-|||.+++..|.+-    ...- .+..+..|   .|...+ .|.- -|+.....+++..|
T Consensus        43 ~~~~v~V~nLp~~~t~~dl~~~----F~~~~~~~~~~~v~~~~~~~g~~~G~a-fVeF~~~e~a~~Al  105 (136)
T 2hgl_A           43 EGFVVKLRGLPWSCSVEDVQNF----LSDCTIHDGAAGVHFIYTREGRQSGEA-FVELGSEDDVKMAL  105 (136)
T ss_dssp             TTCEEEEESCCTTCCHHHHHHH----TTTCCCSSSSTTEEEEECSSSCEEEEE-EEECSSHHHHHHHH
T ss_pred             CCEEEEEECCCCCCCHHHHHHH----HHCCCCCCCEEEEEEEECCCCCEEEEE-EEEECCHHHHHHHH
T ss_conf             7169999598975999999999----742456785589998878999871569-99978999999999


No 80 
>1lwu_C Fibrinogen gamma chain; coiled coil, heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=23.95  E-value=20  Score=11.89  Aligned_cols=42  Identities=12%  Similarity=0.219  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             999899999999988753049899999999989999984056
Q gi|254780182|r  473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT  514 (910)
Q Consensus       473 l~~E~~eL~~~I~~l~~IL~s~~~l~~iI~~EL~eik~kygd  514 (910)
                      +++-......+|+++.++|.....+..-+..++.+++.....
T Consensus        17 l~~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~~~~   58 (323)
T 1lwu_C           17 LEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSR   58 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999887789999999999999999999999999999987545


No 81 
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=23.91  E-value=20  Score=11.88  Aligned_cols=18  Identities=22%  Similarity=0.218  Sum_probs=15.2

Q ss_pred             CCCCHHHHHHHHHHHHHH
Q ss_conf             236999999999878999
Q gi|254780182|r  447 MYLSEVQTRAILELRLAR  464 (910)
Q Consensus       447 f~lSe~QA~AILdMrL~r  464 (910)
                      +.||+.|...|=|+|=|-
T Consensus        55 ~~Lte~Ql~lirDIRRRG   72 (91)
T 2kz5_A           55 YPLTESQLALVRDIRRRG   72 (91)
T ss_dssp             SCCCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHC
T ss_conf             799999999999999802


No 82 
>1jid_A Signal recognition particle 19 kDa protein; signal recognition particle (SRP), protein-RNA complex, GGAG tetraloop, signaling protein/RNA complex; HET: 5BU A23; 1.80A {Homo sapiens} SCOP: d.201.1.1 PDB: 3ktv_B* 1mfq_B* 1ry1_B* 2go5_B 2j37_B
Probab=23.31  E-value=21  Score=11.79  Aligned_cols=86  Identities=14%  Similarity=0.265  Sum_probs=49.6

Q ss_pred             CCCCEEEHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEEEEE
Q ss_conf             67610101331789854789999998876187768888886345866887443447588999987012038999988654
Q gi|254780182|r  178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE  257 (910)
Q Consensus       178 G~~GIAvGmaTnippHNl~Ev~~a~~~~i~~p~~~~~eL~~~i~GPDFPTGG~I~~~~~i~~~y~tGrG~i~iR~k~~ie  257 (910)
                      =+.|==|.-.-.++-=++.|+.+||..+==+..+.-+   +.-| -||.-           +.+  =+|+|+|.-+    
T Consensus        29 r~eGRRV~k~~aV~~Pt~~EI~~a~~~Lgl~~~~E~~---K~yP-r~w~~-----------~~~--~~GRVrV~lk----   87 (128)
T 1jid_A           29 IAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKN---KMYS-REWNR-----------DVQ--YRGRVRVQLK----   87 (128)
T ss_dssp             TTTTCCSCTTTCBSSCCHHHHHHHHHHTTCCEEEETT---CCCT-TCCCC-----------CGG--GCCEEEECCB----
T ss_pred             HHHCCCCCHHHHCCCCCHHHHHHHHHHCCCCEEEECC---CCCC-CCCCC-----------CCC--CCCEEEEEEE----
T ss_conf             5525664887846798999999999985998787337---7787-44355-----------333--5865999876----


Q ss_pred             ECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf             336784599992464435289999999999871
Q gi|254780182|r  258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE  290 (910)
Q Consensus       258 ~~~~~k~~ivItEiPY~vnk~~lie~Ia~lv~~  290 (910)
                      + ..|  .++..++|   +|..|+.+||+.+.+
T Consensus        88 ~-~~G--~~~~~~~~---sK~~Ll~~Ia~~I~k  114 (128)
T 1jid_A           88 Q-EDG--SLCLVQFP---SRKSVMLYAAEMIPK  114 (128)
T ss_dssp             C-TTS--CBSCTTCS---SHHHHHHHHHHHGGG
T ss_pred             C-CCC--CCCCCCCC---CHHHHHHHHHHHHHH
T ss_conf             7-999--87478889---999999999998876


No 83 
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=22.98  E-value=21  Score=11.74  Aligned_cols=16  Identities=31%  Similarity=0.648  Sum_probs=11.4

Q ss_pred             CCCCCCCCCCCCCCCC
Q ss_conf             5613147887088776
Q gi|254780182|r  107 RLLLIEGQGNFGSVDG  122 (910)
Q Consensus       107 r~plidg~GnfGs~dg  122 (910)
                      ...++.+||||-+-||
T Consensus         9 ~~~~~~~~~~~~~~~~   24 (499)
T 2r60_A            9 HVAFLNPQGNFDPADS   24 (499)
T ss_dssp             EEEEECCSSCCCTTCT
T ss_pred             EEEEECCCCCCCCCCC
T ss_conf             5999878766674334


No 84 
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2ve2_A*
Probab=22.58  E-value=22  Score=11.68  Aligned_cols=18  Identities=11%  Similarity=0.183  Sum_probs=7.8

Q ss_pred             EEEECCCCCEEEEEEEEC
Q ss_conf             767528998699989733
Q gi|254780182|r  725 RGISLAKGDQVISMAIVL  742 (910)
Q Consensus       725 kgIkL~~~D~Vv~~~vi~  742 (910)
                      |.+--+++.+|+|+.++.
T Consensus       413 kli~d~~~~~ILGa~~vG  430 (490)
T 1fec_A          413 RIVTNHADGEVLGVHMLG  430 (490)
T ss_dssp             EEEEETTTTEEEEEEEES
T ss_pred             EEEEECCCCEEEEEEEEC
T ss_conf             999999989799999988


No 85 
>2ckz_A DNA-directed RNA polymerase III 18 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=22.53  E-value=15  Score=13.14  Aligned_cols=13  Identities=23%  Similarity=0.393  Sum_probs=7.3

Q ss_pred             CCCHHHHHHHHHH
Q ss_conf             3699999999987
Q gi|254780182|r  448 YLSEVQTRAILEL  460 (910)
Q Consensus       448 ~lSe~QA~AILdM  460 (910)
                      .|||.|.+.||++
T Consensus       144 R~~ee~~~~il~~  156 (161)
T 2ckz_A          144 RFDEKTIEEMLEI  156 (161)
T ss_dssp             -------------
T ss_pred             CCCHHHHHHHHHH
T ss_conf             4898999999999


No 86 
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=22.33  E-value=22  Score=11.64  Aligned_cols=47  Identities=15%  Similarity=0.207  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             99999899999999988753049899999999989999984056883
Q gi|254780182|r  471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR  517 (910)
Q Consensus       471 ~kl~~E~~eL~~~I~~l~~IL~s~~~l~~iI~~EL~eik~kygd~RR  517 (910)
                      -.|+++..+|.++-+.++.-|.++.+-.+-+-.=+..+.+++.|+-+
T Consensus        10 YaLkDqV~eL~~e~krlkk~leeEqkARk~LE~~vrk~lk~~~d~~~   56 (61)
T 3l4f_A           10 YALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNMNDPAW   56 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             99999999999999999988889999999999999999987067852


No 87 
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho gluconate aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=22.15  E-value=22  Score=11.61  Aligned_cols=27  Identities=22%  Similarity=0.254  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             899998887999999899999999988
Q gi|254780182|r  461 RLARLTGLGRDDIRNELNSLGIEIKEC  487 (910)
Q Consensus       461 rL~rLt~LE~~kl~~E~~eL~~~I~~l  487 (910)
                      +|..|+.-++.+|++.+++|.++++++
T Consensus       260 P~~~l~~~~~~~l~~~l~~l~~~i~~l  286 (288)
T 2nuw_A          260 PIFPLTDEEALSLKREIEPLKRKIQEL  286 (288)
T ss_dssp             TSCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999999997


No 88 
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=22.10  E-value=22  Score=11.61  Aligned_cols=34  Identities=15%  Similarity=0.325  Sum_probs=15.5

Q ss_pred             CEEEEEEECCCC----CHHHHHHHHHHHCCHHCCCCCEE
Q ss_conf             557999947988----77899999997610110000002
Q gi|254780182|r  307 GYRVVIELKRGA----SADVILNQLYRYTSLQSLFSVNM  341 (910)
Q Consensus       307 giRivielKr~~----~~~~vln~Lyk~T~Lq~sf~~N~  341 (910)
                      |++|++.||.++    ++..|-+.+=||.+. .+|++++
T Consensus       211 GT~I~L~Lk~d~~Efle~~rl~~lIkkYS~f-I~~PI~l  248 (264)
T 1yc1_A          211 GTKVILHLKEDQTEYLEERRIKEIVKKHSQF-IGYPITL  248 (264)
T ss_dssp             EEEEEEEECGGGGGGGSHHHHHHHHHHHTTT-CSSCEEE
T ss_pred             CCEEEEEECCCHHHHCCHHHHHHHHHHHHHC-CCCCEEE
T ss_conf             9489999688727866998999999987636-6868699


No 89 
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=22.01  E-value=21  Score=11.86  Aligned_cols=57  Identities=11%  Similarity=0.232  Sum_probs=28.2

Q ss_pred             CCEEEEEECCCCCCCHHHHHHHHHHHHHCCC-CCHHHHH---HHHCCC-CCEEEEEEECCCCCHHHH
Q ss_conf             8459999246443528999999999987166-5014458---730374-655799994798877899
Q gi|254780182|r  262 DREQIVVTEIPYQVNKAAMLEKIAELVREKR-IVDIADL---RDESDR-QGYRVVIELKRGASADVI  323 (910)
Q Consensus       262 ~k~~ivItEiPY~vnk~~lie~Ia~lv~~~k-i~gI~di---rDeSdr-~giRivielKr~~~~~~v  323 (910)
                      ....|-|.-|||.++...|.+    +...-. +..+.+|   +|.+.+ .|.-+ |+.+...+++..
T Consensus        16 ~~~~v~v~nLP~~~te~dI~~----~F~~~~~~~~~~~v~~~~~~~g~~~G~af-V~F~~~e~a~~a   77 (118)
T 2db1_A           16 EGYVVKLRGLPWSCSIEDVQN----FLSDCTIHDGVAGVHFIYTREGRQSGEAF-VELESEDDVKLA   77 (118)
T ss_dssp             CCCEEEEESCCTTCCHHHHHH----HTTTSCBTTGGGGEEEEECSSSCEEEEEE-EEBSSHHHHHHH
T ss_pred             CCEEEEEECCCCCCCHHHHHH----HHHHCCCCCCEEEEEEEECCCCCCCCEEE-EEECCHHHHHHH
T ss_conf             867999929898597999999----98744557856999988789997525699-998999999999


No 90 
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} SCOP: h.1.28.1 PDB: 2zxx_A*
Probab=21.86  E-value=22  Score=11.57  Aligned_cols=34  Identities=15%  Similarity=0.196  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             7999999899999999988753049899999999
Q gi|254780182|r  469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK  502 (910)
Q Consensus       469 E~~kl~~E~~eL~~~I~~l~~IL~s~~~l~~iI~  502 (910)
                      +.+.++.|...|.++...|..++..-..+-.+|.
T Consensus        46 ~ie~~~eei~~lk~en~~L~ela~~~~~la~vl~   79 (83)
T 1wlq_A           46 EIEQKDSEIARLRKENKDLAEVAEHVQYMAEVIE   79 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9998889999999999999999999999999999


No 91 
>1vr9_A CBS domain protein/ACT domain protein; TM0892, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=21.84  E-value=21  Score=11.70  Aligned_cols=44  Identities=23%  Similarity=0.375  Sum_probs=32.7

Q ss_pred             HHHHHCCCCC--CCHHHHHHHHHHHCCCHHCCCCCCCCCCCC-CCCC
Q ss_conf             5566436688--704789999997122011156131478870-8877
Q gi|254780182|r   78 SGEVMGKYHP--HGNAAIYDALARMAQDWSLRLLLIEGQGNF-GSVD  121 (910)
Q Consensus        78 vg~v~gkyHP--HGd~siy~a~v~maq~~~~r~plidg~Gnf-Gs~d  121 (910)
                      |.|.|-+--|  +-++++.+|+-.|.+.-..+.|.+|+.|-+ |.+.
T Consensus        15 V~d~m~~~~~~v~~~~sv~ea~~~m~~~~~~~lpVvd~~g~l~Giit   61 (213)
T 1vr9_A           15 VKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVN   61 (213)
T ss_dssp             GGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEE
T ss_pred             HHHHCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEE
T ss_conf             28964689809999294999999999829968999928991999998


No 92 
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), structural genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=21.80  E-value=22  Score=11.56  Aligned_cols=14  Identities=29%  Similarity=0.278  Sum_probs=6.9

Q ss_pred             CCCHHHHHHHHHHH
Q ss_conf             36999999999878
Q gi|254780182|r  448 YLSEVQTRAILELR  461 (910)
Q Consensus       448 ~lSe~QA~AILdMr  461 (910)
                      ++|+.|++++++.+
T Consensus       222 gls~ee~~~ri~~Q  235 (281)
T 2f6r_A          222 GLSEAAAQSRLQSQ  235 (281)
T ss_dssp             CCCHHHHHHHHHTS
T ss_pred             CCCHHHHHHHHHHC
T ss_conf             99999999999938


No 93 
>1zn8_A APRT, adenine phosphoribosyltransferase; glycosyltransferase, polymorphism, purine salvage; HET: AMP; 1.76A {Homo sapiens} SCOP: c.61.1.1 PDB: 1ore_A* 1zn7_A* 1zn9_A*
Probab=21.77  E-value=19  Score=12.10  Aligned_cols=10  Identities=10%  Similarity=0.228  Sum_probs=4.2

Q ss_pred             HHHCCHHHHH
Q ss_conf             5304989999
Q gi|254780182|r  489 DILSSRSRLL  498 (910)
Q Consensus       489 ~IL~s~~~l~  498 (910)
                      .||.+++...
T Consensus        31 ~ll~dp~~~~   40 (180)
T 1zn8_A           31 PVLKDPASFR   40 (180)
T ss_dssp             HHHHSHHHHH
T ss_pred             HHHCCHHHHH
T ss_conf             4761999999


No 94 
>3khp_A MAOC family protein; dehydrogenase, oxidoreductase, structural genomics; HET: TLA; 2.30A {Mycobacterium tuberculosis H37RV}
Probab=21.61  E-value=3  Score=19.33  Aligned_cols=11  Identities=27%  Similarity=0.325  Sum_probs=4.9

Q ss_pred             CEECCCCCCCCH
Q ss_conf             503432273211
Q gi|254780182|r  164 PVVLCARYPNVL  175 (910)
Q Consensus       164 P~vlP~~~P~lL  175 (910)
                      +.|||+ ||.++
T Consensus        71 ~~vlPT-Favv~   81 (311)
T 3khp_A           71 QQVLPT-YAVIC   81 (311)
T ss_dssp             CCCCGG-GHHHH
T ss_pred             CCCCCE-EHHHC
T ss_conf             806874-03014


No 95 
>2gxf_A Hypothetical protein YYBH; alpha-beta protein., structural genomics, PSI, protein structure initiative; HET: MES; 3.10A {Bacillus subtilis} SCOP: d.17.4.22
Probab=21.50  E-value=22  Score=11.51  Aligned_cols=47  Identities=32%  Similarity=0.558  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHCCCCC----CCCCCCCCCHHHHHHHHHHC
Q ss_conf             789999998876187768888886345866----88744344758899998701
Q gi|254780182|r  195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPD----FPTGAVILGRTGIKNAYATG  244 (910)
Q Consensus       195 l~Ev~~a~~~~i~~p~~~~~eL~~~i~GPD----FPTGG~I~~~~~i~~~y~tG  244 (910)
                      +++++++...-+.+.|+  +.|+.+. -||    +|+|..+.|++.|++.|..-
T Consensus         5 I~~l~~~~~~A~~~~D~--d~l~~l~-a~Dav~~~~~g~~~~G~~ai~~~~~~~   55 (142)
T 2gxf_A            5 LKDIISACDLAIQNEDF--DTLMNYY-SEDAVLVVKPGMIARGKEEIKKAFITI   55 (142)
T ss_dssp             HHHHHHHHHHHHHTTCH--HHHTTSE-EEEEEEECSSSCEEEHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCCCH--HHHHHHC-CCCEEEECCCCCEECCHHHHHHHHHHH
T ss_conf             99999999999986999--9999730-478089848996552789999999999


No 96 
>3f40_A Uncharacterized NTF2-like protein; YP_677363.1, NTF2-like protein of unknown function, structural genomics; HET: MSE; 1.27A {Cytophaga hutchinsonii atcc 33406}
Probab=21.19  E-value=23  Score=11.46  Aligned_cols=23  Identities=26%  Similarity=0.453  Sum_probs=9.3

Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             13317898547899999988761877
Q gi|254780182|r  185 GMATNIPTHNLGEVVDGCVAVIDNPD  210 (910)
Q Consensus       185 GmaTnippHNl~Ev~~a~~~~i~~p~  210 (910)
                      ||+|.+-|   +|++.+-+.-+...|
T Consensus         1 ~m~~~~t~---~~lv~~y~~A~~~~D   23 (114)
T 3f40_A            1 GMKTQITT---RDLVLEFIHALNTEN   23 (114)
T ss_dssp             -CCSCCCH---HHHHHHHHHHHHTTC
T ss_pred             CCCCCCCH---HHHHHHHHHHHHCCC
T ss_conf             98766788---999999999987339


No 97 
>3ctp_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens qymf}
Probab=21.16  E-value=18  Score=12.40  Aligned_cols=70  Identities=9%  Similarity=0.016  Sum_probs=43.8

Q ss_pred             HHHHCCCCCCCCCCHH-HHHHHHHHHHCCCCCCCCE----EEEHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHCC
Q ss_conf             8631375400089736-7899999998789999981----134042556643668870478999999712201115
Q gi|254780182|r   37 ILGRAIPDLRDGLKPV-HRRILFGMMQMGVEWNKKY----VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR  107 (910)
Q Consensus        37 I~~RAlPd~rDGlKpv-~Rrily~m~~~~~~~~~~~----~K~a~ivg~v~gkyHPHGd~siy~a~v~maq~~~~r  107 (910)
                      -|+|||=+= .+.+|- ..||+-++.++|..|+..-    .+..+++|-++..+.-+-...++.++-+.++.....
T Consensus        18 TVSr~Ln~~-~~vs~~tr~rV~~~a~~lgY~pn~~a~~l~~~~~~~I~~~~~~~~~~~~~~~~~~i~~~~~~~g~~   92 (330)
T 3ctp_A           18 TVSRHLNNT-GYVSEDAREKIQKVVDELNYTPNALARAMFTKNSKTIGLMVPNISNPFFNQMASVIEEYAKNKGYT   92 (330)
T ss_dssp             -------------------------------------------CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCE
T ss_pred             HHHHHHCCC-CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCE
T ss_conf             999996897-999999999999999995898798889761278727999716778852004567999999977998


No 98 
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural genomics, joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=21.16  E-value=23  Score=11.46  Aligned_cols=49  Identities=14%  Similarity=0.159  Sum_probs=34.3

Q ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHHCC
Q ss_conf             98887-999999899999999988753049---89999999998999998405
Q gi|254780182|r  465 LTGLG-RDDIRNELNSLGIEIKECLDILSS---RSRLLGIIKQELLSVKDELD  513 (910)
Q Consensus       465 Lt~LE-~~kl~~E~~eL~~~I~~l~~IL~s---~~~l~~iI~~EL~eik~kyg  513 (910)
                      +..|+ ....-+++..+.+.++++..++.+   +..+.....+|+.++.++.-
T Consensus        52 ~s~L~~~v~~~~~l~~~~~dl~el~eLl~e~~~D~el~ela~eEl~~~~~~l~  104 (371)
T 1zbt_A           52 EANSRETVAVYREYKQVVQNIADAQEMIKDASGDPELEEMAKEELKNSKVAKE  104 (371)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             99899999999999999987999999985136885799999999987554589


No 99 
>1b8x_A Protein (AML-1B); nuclear matrix targeting signal protein; 2.70A {Escherichia coli} SCOP: a.45.1.1 c.47.1.5
Probab=21.12  E-value=23  Score=11.45  Aligned_cols=12  Identities=8%  Similarity=0.313  Sum_probs=4.6

Q ss_pred             HHHHHHHCCCCC
Q ss_conf             999998405688
Q gi|254780182|r  505 LLSVKDELDTPR  516 (910)
Q Consensus       505 L~eik~kygd~R  516 (910)
                      +-.+|+=...+|
T Consensus       185 rP~Vkkyl~S~r  196 (280)
T 1b8x_A          185 IPQIDKYLKSSK  196 (280)
T ss_dssp             SHHHHTTTTSSS
T ss_pred             CHHHHHHHCCCC
T ss_conf             999999983967


No 100
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=20.99  E-value=21  Score=11.86  Aligned_cols=43  Identities=16%  Similarity=0.190  Sum_probs=26.5

Q ss_pred             HHHHHC---CC-CCCCHHHHHHHHHHHCCCHHCCCCCCCCCCCC-CCC
Q ss_conf             556643---66-88704789999997122011156131478870-887
Q gi|254780182|r   78 SGEVMG---KY-HPHGNAAIYDALARMAQDWSLRLLLIEGQGNF-GSV  120 (910)
Q Consensus        78 vg~v~g---ky-HPHGd~siy~a~v~maq~~~~r~plidg~Gnf-Gs~  120 (910)
                      |+++|=   ++ +=+-+.++.+|+-.|.+.--.+.|.+|.+|++ |-+
T Consensus        16 V~~~mip~~~v~~v~~~~~l~~a~~~m~~~~~s~ipVvd~~g~lvGii   63 (159)
T 1yav_A           16 VGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLI   63 (159)
T ss_dssp             HHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEE
T ss_pred             HHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCEEEEEECCCCEEEEEE
T ss_conf             999697456469996909699999999975985999991883597677


No 101
>3ebt_A Uncharacterized NTF2-like protein; YP_110153.1, NTF2-like protein of unknown function, structural genomics; 1.30A {Burkholderia pseudomallei K96243} SCOP: d.17.4.9
Probab=20.89  E-value=23  Score=11.42  Aligned_cols=56  Identities=14%  Similarity=0.178  Sum_probs=33.1

Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH--------CCCC--CCCCCCCCCCHHHHHHHHHHCCCEE
Q ss_conf             13317898547899999988761877688888863--------4586--6887443447588999987012038
Q gi|254780182|r  185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI--------IRGP--DFPTGAVILGRTGIKNAYATGRGSI  248 (910)
Q Consensus       185 GmaTnippHNl~Ev~~a~~~~i~~p~~~~~eL~~~--------i~GP--DFPTGG~I~~~~~i~~~y~tGrG~i  248 (910)
                      ||++|      .|++.....-....|+  +.++++        .|+|  +.|.+|...|.+++.+.+..-...+
T Consensus         1 ~ms~n------~~~v~~~~~a~~~~D~--~~~~~~~~dD~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~   66 (132)
T 3ebt_A            1 GMSNN------MQTVRESYEAFHRRDL--PGVLAALAPDVRWTHPDGMSPYGLGGTKHGHDEVIAFIRHVPTHI   66 (132)
T ss_dssp             -CCHH------HHHHHHHHHHHHTTCH--HHHHTTEEEEEEEEECGGGGGGTCCEEEEHHHHHHHHHHHGGGTE
T ss_pred             CCCHH------HHHHHHHHHHHHCCCH--HHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf             98749------9999999999986899--899986186669996478777887764210899999987343236


No 102
>3bq9_A Predicted rossmann fold nucleotide-binding domain-containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica OS145}
Probab=20.86  E-value=23  Score=11.41  Aligned_cols=83  Identities=14%  Similarity=0.169  Sum_probs=48.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH--HHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEC
Q ss_conf             52369999999998789999-88879999998999999999887--5304989999999998999998405688331001
Q gi|254780182|r  446 TMYLSEVQTRAILELRLARL-TGLGRDDIRNELNSLGIEIKECL--DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE  522 (910)
Q Consensus       446 ~f~lSe~QA~AILdMrL~rL-t~LE~~kl~~E~~eL~~~I~~l~--~IL~s~~~l~~iI~~EL~eik~kygd~RRT~I~~  522 (910)
                      .+.|+..|...-|.--|||- ++.=.-.++++-   ...|++.-  +|=++++     |.+-+.++-+.|-...|-++-.
T Consensus       369 ~l~l~~~q~~~~laa~lrrafsgivagnvk~~~---~~~i~~~g~~~~~gd~~-----~m~~~d~ll~~fv~q~rmklp~  440 (460)
T 3bq9_A          369 ALNLHPDQPKERLAADLRRAFSAIVAGNVKDEG---IRQIRKNGVFTIHGEQS-----LMKRLDELLRAFVEQGRMKLPG  440 (460)
T ss_dssp             TCCBCTTSCHHHHHHHHHHHHHHHHHHHHCHHH---HHHHHHHCSEEEEBCHH-----HHHHHHHHHHHHHHTTCSSCTT
T ss_pred             HCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHH---HHHHHHCCCCEECCCHH-----HHHHHHHHHHHHHHHCCCCCCC
T ss_conf             264787899899999999885000456648899---99999629961068899-----9999999999999838766898


Q ss_pred             CCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf             343453010145678189990797
Q gi|254780182|r  523 GLLDMEDEDCIVREDMVVTVSHLG  546 (910)
Q Consensus       523 ~~~~i~~EdlI~~E~vvV~lS~~G  546 (910)
                      ..          -+||.-++|..|
T Consensus       441 ~~----------y~pcy~i~~~~~  454 (460)
T 3bq9_A          441 SV----------YNPCYKVITDEG  454 (460)
T ss_dssp             SC----------CCCSEEEEC---
T ss_pred             CC----------CCCCEEEECCCC
T ss_conf             77----------877757744666


No 103
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, binary complex; HET: GDP; 2.40A {Mycobacterium smegmatis str} PDB: 2gej_A*
Probab=20.81  E-value=23  Score=11.40  Aligned_cols=11  Identities=9%  Similarity=-0.043  Sum_probs=5.4

Q ss_pred             HHHHHHHHHHC
Q ss_conf             69999998618
Q gi|254780182|r  397 LDEVVRIIRFS  407 (910)
Q Consensus       397 IDeVI~iIR~S  407 (910)
                      .+++.+.++.|
T Consensus       273 ~~~~~~~l~~a  283 (406)
T 2gek_A          273 DATKASAMRSA  283 (406)
T ss_dssp             HHHHHHHHHHS
T ss_pred             CCHHHHHHHCC
T ss_conf             20677776403


No 104
>1uyl_A HSP 86, heat shock protein HSP 90-alpha; ATPase, chaperone, ATP-binding; 1.4A {Homo sapiens} SCOP: d.122.1.1 PDB: 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* 2vcj_A* 2wi1_A* 2wi2_A* 2wi3_A* 2wi4_A* 2wi5_A* ...
Probab=20.66  E-value=23  Score=11.38  Aligned_cols=31  Identities=29%  Similarity=0.349  Sum_probs=12.9

Q ss_pred             EEEECCCCEEEEECCCCCCCCCCCCCCCCEEEEE
Q ss_conf             9995489399982000432244456554124545
Q gi|254780182|r  590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILS  623 (910)
Q Consensus       590 LfFTs~Gkvy~l~v~~IP~~sr~skG~pi~nll~  623 (910)
                      ...++.+..|.+....   +.+..+|+.|.-.++
T Consensus       161 ~w~s~g~g~~~i~~~~---~~~~~~GT~I~L~lk  191 (236)
T 1uyl_A          161 AWESSAGGSFTVRTDT---GEPMGRGTKVILHLK  191 (236)
T ss_dssp             EEEECSTTEEEEEECC---SSCCSSEEEEEEEEC
T ss_pred             EEEECCCCCEEEEEEC---CCCCCCCCEEEEEEC
T ss_conf             0781378873798504---555676617999847


No 105
>3al0_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=20.47  E-value=23  Score=11.35  Aligned_cols=14  Identities=36%  Similarity=0.695  Sum_probs=5.8

Q ss_pred             HHHHCCCCCCCCCC
Q ss_conf             88634586688744
Q gi|254780182|r  216 LMEIIRGPDFPTGA  229 (910)
Q Consensus       216 L~~~i~GPDFPTGG  229 (910)
                      |++++-.|||-++-
T Consensus       155 LiEIvT~Pd~~s~e  168 (482)
T 3al0_B          155 LIEIVTEPDISSPR  168 (482)
T ss_dssp             EEEEEECTTCCSHH
T ss_pred             EEEEEECCCCCCHH
T ss_conf             47998238988889


No 106
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, structural genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=20.28  E-value=24  Score=11.32  Aligned_cols=48  Identities=10%  Similarity=0.147  Sum_probs=30.4

Q ss_pred             EEHHHHHHHHCC----C-CCCCHHHHHHHHHHHCCCHHCCCCCCCCCCCC-CCC
Q ss_conf             340425566436----6-88704789999997122011156131478870-887
Q gi|254780182|r   73 KCARISGEVMGK----Y-HPHGNAAIYDALARMAQDWSLRLLLIEGQGNF-GSV  120 (910)
Q Consensus        73 K~a~ivg~v~gk----y-HPHGd~siy~a~v~maq~~~~r~plidg~Gnf-Gs~  120 (910)
                      ..+-.|+|+|..    . .=--++++++|+-.|.+.--...|.+|..|.+ |-+
T Consensus        21 ~~~t~V~dim~~~~rdvvtv~~~~tv~eAi~~m~~~~~~~l~Vvd~~~~~~Gii   74 (165)
T 3fhm_A           21 GMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIF   74 (165)
T ss_dssp             SSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEE
T ss_pred             CHHCCHHHHHCCCCCCCEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCEEEEE
T ss_conf             001328898358999748999929699999999974984999994898199997


No 107
>3nfi_A DNA-directed RNA polymerase I subunit RPA49; winged helix, transcription, DNA binding, DN protein; HET: MSE PE4; 1.90A {Saccharomyces cerevisiae} PDB: 3nfh_A
Probab=20.10  E-value=22  Score=11.54  Aligned_cols=14  Identities=14%  Similarity=0.183  Sum_probs=7.9

Q ss_pred             EEHHHHCCCCCCHH
Q ss_conf             10133178985478
Q gi|254780182|r  183 AVGMATNIPTHNLG  196 (910)
Q Consensus       183 AvGmaTnippHNl~  196 (910)
                      +++-+.+|||||+.
T Consensus        15 ~~~~~rpiPp~n~~   28 (237)
T 3nfi_A           15 ITSNDRPTPLANID   28 (237)
T ss_dssp             ----CCSSCCCCTT
T ss_pred             HHHCCCCCCCCCCC
T ss_conf             76116899989999


No 108
>3fvh_A Serine/threonine-protein kinase PLK1; POLO like kinas 1, POLO box domain, phosphopeptide binding domain, ATP-binding, cell cycle; HET: TPO; 1.58A {Homo sapiens} PDB: 1q4k_B* 2ogq_A 2ojs_A* 2ojx_A 3bzi_A* 3hik_A* 1q4o_A* 1umw_A* 3hih_A 3c5l_A*
Probab=20.04  E-value=24  Score=11.28  Aligned_cols=28  Identities=14%  Similarity=0.065  Sum_probs=14.0

Q ss_pred             EEECCCCEEEEEECCCCEEEEECCCCCC
Q ss_conf             3323777399995489399982000432
Q gi|254780182|r  581 FIVSTHTSVLFFSSLGFVYKEKVWRLPI  608 (910)
Q Consensus       581 ~~~~t~d~LLfFTs~Gkvy~l~v~~IP~  608 (910)
                      +.......+-++...|...+....+.|.
T Consensus        77 il~~~~~~v~Y~~~~~~~~~~t~~~~P~  104 (237)
T 3fvh_A           77 ILYNDGDSLQYIERDGTESYLTVSSHPN  104 (237)
T ss_dssp             EECTTSSEEEEECTTCCEEEEESSSCCG
T ss_pred             EECCCCCEEEEECCCCCEEEEECCCCCH
T ss_conf             8858997699987899589899002997


Done!