Query gi|254780182|ref|YP_003064595.1| DNA gyrase subunit A [Candidatus Liberibacter asiaticus str. psy62] Match_columns 910 No_of_seqs 225 out of 2407 Neff 5.8 Searched_HMMs 23785 Date Mon May 23 08:07:00 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780182.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1zvu_A Topoisomerase IV subuni 100.0 0 0 1748.2 51.6 692 38-834 1-707 (716) 2 2wl2_A GYRA, DNA gyrase subuni 100.0 0 0 1320.0 38.2 510 13-522 4-522 (522) 3 2inr_A DNA topoisomerase 4 sub 100.0 0 0 1261.0 32.5 491 11-527 23-513 (514) 4 2xcs_B DNA gyrase subunit B, D 100.0 0 0 1178.7 40.8 488 9-522 203-691 (692) 5 3ilw_A DNA gyrase subunit A; D 100.0 0 0 1180.3 37.5 464 33-522 2-470 (470) 6 2nov_A DNA topoisomerase 4 sub 100.0 0 0 1188.5 27.9 489 14-528 2-490 (496) 7 2xkj_E Topoisomerase IV; type 100.0 0 0 1112.1 41.1 495 9-537 266-767 (767) 8 3l4j_A DNA topoisomerase 2; to 100.0 0 0 922.3 20.1 484 7-516 238-757 (757) 9 3l6v_A GYRA, DNA gyrase subuni 100.0 0 0 624.8 32.7 354 531-908 2-355 (370) 10 1zi0_A DNA gyrase subunit A; b 100.0 0 0 600.5 30.4 307 534-899 1-307 (307) 11 1suu_A DNA gyrase subunit A; t 100.0 0 0 595.7 32.3 312 529-899 1-312 (312) 12 1wp5_A Topoisomerase IV; broke 100.0 0 0 593.7 28.6 314 532-907 1-315 (323) 13 1zvt_A Topoisomerase IV subuni 100.0 2.3E-34 9.6E-39 324.7 18.9 189 536-742 2-197 (256) 14 3ku8_A GYRA14, DNA gyrase subu 100.0 1.6E-29 6.5E-34 281.4 8.5 139 358-496 10-156 (156) 15 3l6v_A GYRA, DNA gyrase subuni 99.9 2.3E-22 9.5E-27 217.3 25.4 205 535-745 112-348 (370) 16 1wp5_A Topoisomerase IV; broke 99.9 9.6E-22 4E-26 211.7 24.4 196 537-742 107-306 (323) 17 1suu_A DNA gyrase subunit A; t 99.9 2.7E-22 1.2E-26 216.6 21.6 40 674-713 39-78 (312) 18 1zi0_A DNA gyrase subunit A; b 99.9 4.2E-22 1.8E-26 214.9 21.9 189 539-739 112-303 (307) 19 1zvt_A Topoisomerase IV subuni 99.8 4.4E-17 1.9E-21 170.0 15.8 188 648-901 5-200 (256) 20 1zvu_A Topoisomerase IV subuni 99.7 5.3E-17 2.2E-21 169.2 13.4 234 586-892 472-712 (716) 21 3l4j_A DNA topoisomerase 2; to 93.5 0.47 2E-05 26.6 11.2 34 85-121 26-62 (757) 22 1wle_A Seryl-tRNA synthetase; 80.7 2.5 0.00011 20.0 9.7 24 718-743 319-342 (501) 23 3lss_A Seryl-tRNA synthetase; 80.4 2.6 0.00011 19.9 7.9 47 459-512 95-141 (484) 24 2q6t_A DNAB replication FORK h 79.3 2.3 9.7E-05 20.4 4.4 17 499-515 339-355 (444) 25 3cnf_A VP1; cytoplasmic polyhe 77.8 2.1 8.8E-05 20.7 3.9 81 649-739 1177-1258(1333) 26 1t3j_A Mitofusin 1; coiled coi 73.9 3.7 0.00015 18.6 7.0 52 461-512 40-94 (96) 27 2vld_A NUCS, UPF0286 protein p 67.7 4.8 0.0002 17.5 3.8 34 678-711 141-176 (251) 28 2r6a_A DNAB helicase, replicat 66.8 5 0.00021 17.4 4.4 20 266-286 206-225 (454) 29 2dq3_A Seryl-tRNA synthetase; 66.5 5.1 0.00021 17.3 9.0 84 401-512 4-91 (425) 30 2ayu_A Nucleosome assembly pro 54.8 3.8 0.00016 18.5 1.3 64 460-523 72-141 (417) 31 3h3m_A Flagellar protein FLIT; 51.1 8.5 0.00036 15.3 4.2 41 480-520 74-114 (126) 32 3gc3_B Arrestin beta-1, clathr 49.4 9 0.00038 15.1 10.3 66 795-871 268-333 (363) 33 1b4u_A LIGA, LIGB, protocatech 47.6 9.5 0.0004 14.9 3.0 25 447-471 64-88 (139) 34 2qzb_A Uncharacterized protein 46.9 2.4 9.9E-05 20.3 -0.8 54 567-621 47-104 (166) 35 1io1_A Phase 1 flagellin; beta 46.6 9.8 0.00041 14.7 6.3 61 387-488 5-74 (398) 36 1ses_A Seryl-tRNA synthetase; 46.0 10 0.00042 14.7 9.7 55 401-486 4-60 (421) 37 1fxl_A Paraneoplastic encephal 45.0 10 0.00043 14.5 5.6 60 264-326 89-149 (167) 38 1ik9_A DNA repair protein XRCC 43.3 11 0.00045 14.4 6.8 24 485-508 178-201 (213) 39 3oc4_A Oxidoreductase, pyridin 42.5 11 0.00047 14.3 2.6 20 725-744 372-391 (452) 40 3nkz_A Flagellar protein FLIT; 41.8 11 0.00048 14.2 4.2 57 481-537 65-122 (123) 41 1b79_A DNAB helicase; hexamer, 40.9 12 0.00049 14.1 3.3 36 189-225 15-50 (119) 42 3fv6_A YQZB protein; CBS domai 40.1 8.2 0.00034 15.4 1.1 39 78-118 19-60 (159) 43 2ob9_A Tail assembly chaperone 37.5 13 0.00054 13.7 1.9 29 47-75 99-127 (130) 44 3glc_A Aldolase LSRF; TIM barr 37.3 13 0.00055 13.6 3.5 22 397-418 270-291 (295) 45 3fxd_A Protein ICMQ; helix bun 36.8 13 0.00053 13.7 1.7 45 448-514 4-48 (57) 46 2dq0_A Seryl-tRNA synthetase; 36.7 13 0.00056 13.6 11.0 85 401-512 4-92 (455) 47 1q8y_A SR protein kinase; tran 36.3 3.3 0.00014 19.0 -1.4 30 81-120 3-35 (373) 48 1ldd_A APC2WHB, anaphase promo 36.1 13 0.00057 13.5 1.9 36 184-219 14-53 (74) 49 2o16_A Acetoin utilization pro 36.1 9.8 0.00041 14.7 1.0 29 89-117 20-48 (160) 50 3ol2_B Plexin-B1; beta-propell 35.7 14 0.00058 13.4 6.2 25 844-868 394-418 (528) 51 1m1j_C Fibrinogen gamma chain; 34.3 14 0.0006 13.3 12.0 48 469-516 92-139 (409) 52 3bzq_A Nitrogen regulatory pro 33.9 14 0.00061 13.2 3.6 78 190-293 10-88 (114) 53 3a7m_A Flagellar protein FLIT; 33.8 15 0.00061 13.2 3.8 57 481-537 62-119 (122) 54 1xi4_A Clathrin heavy chain; a 33.8 15 0.00061 13.2 10.3 20 848-867 925-944 (1630) 55 3ghg_C Fibrinogen gamma chain; 33.4 15 0.00062 13.2 10.9 50 468-517 91-140 (411) 56 1wak_A Serine/threonine-protei 31.7 4.5 0.00019 17.7 -1.3 18 209-226 11-28 (397) 57 1fzc_C Fibrin; blood coagulati 31.3 16 0.00066 12.9 1.7 34 479-512 15-48 (319) 58 1muk_A Minor core protein lamb 31.3 13 0.00053 13.8 0.9 129 236-375 281-443 (1267) 59 3kjx_A Transcriptional regulat 31.2 16 0.00066 12.9 3.6 81 20-104 12-97 (344) 60 3iq1_A DPS family protein; csg 30.3 6.8 0.00029 16.2 -0.6 17 393-409 63-79 (159) 61 1bpo_A Protein (clathrin); cla 30.1 16 0.00069 12.7 11.9 66 795-871 268-333 (494) 62 1deq_A Fibrinogen (alpha chain 30.1 16 0.00069 12.7 14.3 12 349-360 49-60 (390) 63 3lay_A Zinc resistance-associa 29.9 16 0.00069 12.7 7.1 65 447-516 66-133 (175) 64 2khd_A Uncharacterized protein 28.0 15 0.00062 13.2 0.8 25 446-470 79-103 (108) 65 1q47_A Semaphorin 3A; beta pro 27.9 18 0.00074 12.4 7.9 11 705-715 315-325 (495) 66 2cdu_A NADPH oxidase; flavoenz 27.7 18 0.00075 12.4 4.6 19 725-743 377-395 (452) 67 2nyc_A Nuclear protein SNF4; b 27.5 18 0.00075 12.4 1.2 29 88-116 25-53 (144) 68 3dm8_A Uncharacterized protein 27.2 18 0.00076 12.3 7.5 56 192-249 3-68 (143) 69 2jo8_A Serine/threonine-protei 27.1 16 0.00065 12.9 0.8 22 497-518 22-43 (51) 70 1o50_A CBS domain-containing p 26.8 13 0.00056 13.6 0.4 42 78-120 18-63 (157) 71 1l1q_A Adenine phosphoribosylt 26.5 16 0.00068 12.8 0.8 10 262-271 117-126 (186) 72 1y5h_A Hypothetical protein RV 26.3 14 0.00059 13.4 0.5 43 78-120 10-55 (133) 73 1itu_A Renal dipeptidase; glyc 25.9 19 0.0008 12.2 6.2 13 102-114 8-20 (369) 74 3kpb_A Uncharacterized protein 25.8 19 0.0008 12.2 1.7 44 77-121 2-49 (122) 75 1tvf_A PBP4, penicillin bindin 25.5 19 0.00081 12.1 3.2 11 350-360 110-120 (369) 76 3lqn_A CBS domain protein; csg 25.2 19 0.00082 12.1 1.5 43 78-120 17-64 (150) 77 2pi2_E Replication protein A 1 25.1 20 0.00082 12.1 1.7 15 695-709 61-75 (142) 78 2hsg_A Glucose-resistance amyl 24.6 20 0.00083 12.0 1.0 84 21-108 5-93 (332) 79 2hgl_A HNRPF protein, heteroge 24.1 18 0.00075 12.4 0.6 58 262-324 43-105 (136) 80 1lwu_C Fibrinogen gamma chain; 23.9 20 0.00086 11.9 7.2 42 473-514 17-58 (323) 81 2kz5_A Transcription factor NF 23.9 20 0.00086 11.9 4.0 18 447-464 55-72 (91) 82 1jid_A Signal recognition part 23.3 21 0.00088 11.8 1.6 86 178-290 29-114 (128) 83 2r60_A Glycosyl transferase, g 23.0 21 0.00089 11.7 1.9 16 107-122 9-24 (499) 84 1fec_A Trypanothione reductase 22.6 22 0.0009 11.7 3.5 18 725-742 413-430 (490) 85 2ckz_A DNA-directed RNA polyme 22.5 15 0.00062 13.1 0.0 13 448-460 144-156 (161) 86 3l4f_A RHO guanine nucleotide 22.3 22 0.00091 11.6 5.0 47 471-517 10-56 (61) 87 2nuw_A 2-keto-3-deoxygluconate 22.2 22 0.00092 11.6 2.0 27 461-487 260-286 (288) 88 1yc1_A HSP 86, heat shock prot 22.1 22 0.00092 11.6 3.6 34 307-341 211-248 (264) 89 2db1_A Heterogeneous nuclear r 22.0 21 0.00086 11.9 0.6 57 262-323 16-77 (118) 90 1wlq_A Geminin; coiled-coil; 2 21.9 22 0.00093 11.6 5.1 34 469-502 46-79 (83) 91 1vr9_A CBS domain protein/ACT 21.8 21 0.0009 11.7 0.7 44 78-121 15-61 (213) 92 2f6r_A COA synthase, bifunctio 21.8 22 0.00093 11.6 3.1 14 448-461 222-235 (281) 93 1zn8_A APRT, adenine phosphori 21.8 19 0.00081 12.1 0.5 10 489-498 31-40 (180) 94 3khp_A MAOC family protein; de 21.6 3 0.00013 19.3 -3.7 11 164-175 71-81 (311) 95 2gxf_A Hypothetical protein YY 21.5 22 0.00094 11.5 3.1 47 195-244 5-55 (142) 96 3f40_A Uncharacterized NTF2-li 21.2 23 0.00096 11.5 5.1 23 185-210 1-23 (114) 97 3ctp_A Periplasmic binding pro 21.2 18 0.00075 12.4 0.2 70 37-107 18-92 (330) 98 1zbt_A RF-1, peptide chain rel 21.2 23 0.00096 11.5 4.8 49 465-513 52-104 (371) 99 1b8x_A Protein (AML-1B); nucle 21.1 23 0.00096 11.5 1.9 12 505-516 185-196 (280) 100 1yav_A Hypothetical protein BS 21.0 21 0.00086 11.9 0.5 43 78-120 16-63 (159) 101 3ebt_A Uncharacterized NTF2-li 20.9 23 0.00097 11.4 6.8 56 185-248 1-66 (132) 102 3bq9_A Predicted rossmann fold 20.9 23 0.00097 11.4 1.0 83 446-546 369-454 (460) 103 2gek_A Phosphatidylinositol ma 20.8 23 0.00097 11.4 1.8 11 397-407 273-283 (406) 104 1uyl_A HSP 86, heat shock prot 20.7 23 0.00098 11.4 3.6 31 590-623 161-191 (236) 105 3al0_B Aspartyl/glutamyl-tRNA( 20.5 23 0.00099 11.3 5.1 14 216-229 155-168 (482) 106 3fhm_A Uncharacterized protein 20.3 24 0.00099 11.3 1.0 48 73-120 21-74 (165) 107 3nfi_A DNA-directed RNA polyme 20.1 22 0.00094 11.5 0.5 14 183-196 15-28 (237) 108 3fvh_A Serine/threonine-protei 20.0 24 0.001 11.3 1.1 28 581-608 77-104 (237) No 1 >1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA binding, DNA topology; 3.00A {Escherichia coli} Probab=100.00 E-value=0 Score=1748.20 Aligned_cols=692 Identities=34% Similarity=0.549 Sum_probs=652.6 Q ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHCCCCCCCCCCCC Q ss_conf 63137540008973678999999987899999811340425566436688704789999997122011156131478870 Q gi|254780182|r 38 LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117 (910) Q Consensus 38 ~~RAlPd~rDGlKpv~Rrily~m~~~~~~~~~~~~K~a~ivg~v~gkyHPHGd~siy~a~v~maq~~~~r~plidg~Gnf 117 (910) .+|||||+|||||||||||||||+++|++++++|+||||+||+||||||||||+|+|||||||||+|+|||||+|||||| T Consensus 1 l~RalP~~~DGlKpvqRril~~m~~~~~~~~~~~~k~a~~vg~v~g~yhpHGd~s~~~a~v~maq~~~~~~pl~~~~Gnf 80 (716) T 1zvu_A 1 MDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNW 80 (716) T ss_dssp -CCCCCBTTTCCCHHHHHHHHHHSTTCC----------CCHHHHHTTTSCTTCHHHHHHHHHHTSTTSCSSCSEEECSCC T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCC T ss_conf 98778972238857888999999862898999854435479887418889759999999999835323046216478987 Q ss_pred CCCCCCC-CCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEECCCCCCCCHHCCCCCEEEHHHHCCCCCCHH Q ss_conf 8877697-201357899978999999863076840533068988548503432273211016761010133178985478 Q gi|254780182|r 118 GSVDGDP-PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196 (910) Q Consensus 118 Gs~dgd~-~AA~RYte~rl~~~~~~~l~~i~~~tv~~~~n~D~~~~EP~vlP~~~P~lL~nG~~GIAvGmaTnippHNl~ 196 (910) ||+||++ ||||||||||||+++++||.|+|++||+|+|||||+++||+|||++|||||||||+|||||||||||||||+ T Consensus 81 Gs~~~~~~~Aa~RY~e~rls~~~~~~~~~~~~~~~~~~~n~Dg~~~EP~~lp~~~P~lLvNG~~GIavG~aT~IpphNl~ 160 (716) T 1zvu_A 81 GAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 160 (716) T ss_dssp SSSSSCCCTTSSCGGGEEECGGGHHHHTTTTSSCSCEEECTTSSSEEESSCCCSSCHHHHHCCCSCCSSCSCBCCCBCHH T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHCCCCCCHH T ss_conf 89999965465667873557999998764065744766388987458730266564776357765456765277663368 Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCC-HHHHHHHHHHCCCEEEEEEEEEEEECCCCCEEEEEECCCCCC Q ss_conf 9999998876187768888886345866887443447-588999987012038999988654336784599992464435 Q gi|254780182|r 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275 (910) Q Consensus 197 Ev~~a~~~~i~~p~~~~~eL~~~i~GPDFPTGG~I~~-~~~i~~~y~tGrG~i~iR~k~~ie~~~~~k~~ivItEiPY~v 275 (910) ||++||+++|++|++++++||++||||||||||+|++ .++|.++|+||||+|++||+|++|+ ++|||||||||| T Consensus 161 ev~~a~~~~i~~~~~~~~~l~~~i~gPdfptgg~i~~~~~~i~~~y~tG~G~i~~r~~~~~e~-----~~ivItEiPy~~ 235 (716) T 1zvu_A 161 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED-----GAVVISALPHQV 235 (716) T ss_dssp HHHHHHHHHHHCTTCCHHHHTTTCCSBCCSSSSEECSCTTHHHHHHHHTEEEEEEECEEEEET-----TEEEEEECCTTC T ss_pred HHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCEEECCHHHHHHHHHCCCEEEEEEEEEECCC-----CEEEEEECCCCC T ss_conf 888778998629987889996137789989856697684888876526985999999982448-----749999788545 Q ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEE--EEECCCCCHHHHHHHHHHHCCHHCCCCCEEEEE-ECCCCCCC Q ss_conf 289999999999871665014458730374655799--994798877899999997610110000002455-41663000 Q gi|254780182|r 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV--IELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERF 352 (910) Q Consensus 276 nk~~lie~Ia~lv~~~ki~gI~dirDeSdr~giRiv--ielKr~~~~~~vln~Lyk~T~Lq~sf~~N~~aL-~~g~P~~l 352 (910) ||++++|+|++++++||++||+|+|||||++|+|+| ++.+++++++.|||+|||+|+||+||++||+++ ++|+|+++ T Consensus 236 ~~~~lie~i~~lv~~kki~~i~d~~DeSd~~~~~~vv~~~~~~~~~~e~vl~~Lyk~T~Lq~s~~~N~~~i~~~g~P~~~ 315 (716) T 1zvu_A 236 SGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVK 315 (716) T ss_dssp CHHHHHHHHHHHHHTTSCTTEEEEEECCCSSSTTCEEEEESSSSCCHHHHHHHHHHHSTTEEEEEEECEEECTTSCEEEC T ss_pred CHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCHHHHHCCCCEEEEEECCCCCCC T ss_conf 67889999998876489662000111356667579995055568899999999998442344313045788309964505 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHH Q ss_conf 29999999999999999999999999998887789999998740699999986189978987877631269788999997 Q gi|254780182|r 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 (910) Q Consensus 353 ~Lk~iL~~fi~hR~evi~rRt~~~L~ka~~R~HILeGL~~Al~nIDeVI~iIR~S~d~~eAk~~L~~~~~~~~~~~~~~~ 432 (910) +|+++|++|++||++|++||++|+|+|+++|+||||||++|+.+||+||++||+|+++. .+||++ T Consensus 316 ~l~eiL~~f~~~R~evi~rR~~~~L~k~~~rl~ilegl~~a~~~iD~vI~iIr~s~~~~---~~l~~~------------ 380 (716) T 1zvu_A 316 NLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPK---PALMSR------------ 380 (716) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSHH---HHHHHS------------ T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH---HHHHHH------------ T ss_conf 79999999999999999999999999999999999829999983999999996588558---999985------------ Q ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC Q ss_conf 40221112223445236999999999878999988879999998999999999887530498999999999899999840 Q gi|254780182|r 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512 (910) Q Consensus 433 ~~~~~~~~~~~~~~f~lSe~QA~AILdMrL~rLt~LE~~kl~~E~~eL~~~I~~l~~IL~s~~~l~~iI~~EL~eik~ky 512 (910) |+|||.||+|||+|||||||+||++||++|+++|.++|++|++||+|+++++++|++||.+++++| T Consensus 381 --------------f~~se~Qa~aIL~mrL~~Lt~le~~kl~~E~~~l~~~i~~l~~IL~s~~~l~~~I~~EL~elkkkf 446 (716) T 1zvu_A 381 --------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 446 (716) T ss_dssp --------------TTCCTTHHHHHHTCCGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH T ss_pred --------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH T ss_conf --------------599989999999757878778889999999999999999997420488898999998999999971 Q ss_pred CCCCCCEEECCC--CCCCCCCCCCCCCEEEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEECCCCEEE Q ss_conf 568833100134--345301014567818999079705233100000233456521100014641010113323777399 Q gi|254780182|r 513 DTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 (910) Q Consensus 513 gd~RRT~I~~~~--~~i~~EdlI~~E~vvV~lS~~GyIKr~~~~~yr~Q~RggkG~~~~~~ke~D~v~~~~~~~t~d~LL 590 (910) |++|||.|.+.. .+++.+++|++|+++|++|+.|||||++.++|+.| +++++++|.+.+++.|+|||+|+ T Consensus 447 gd~RRT~i~~~~~~~~~~~edli~~e~v~V~ls~~GyIkr~~~~~~~~~--------~~~~k~~D~~~~~~~~~t~d~ll 518 (716) T 1zvu_A 447 GDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAP--------GLNYKAGDSFKAAVKGKSNQPVV 518 (716) T ss_dssp CCCCCSCBCCCCCCCCCCSSTTSCCCCCCEEEETTTEEEECCC-----------------------CCEEECCCSSSCEE T ss_pred CCCCCCCCCCCCCCCCCCHHHHCCCCCEEEEECCCCEEEECCCCCCCCC--------CCCCCCCCCCEEEEEEECCCCEE T ss_conf 8988742214532245788780767650688636876862367765544--------54232366534789971576406 Q ss_pred EEECCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEECHHHHHHCCC Q ss_conf 99548939998200043224445655412454536556200256630125666871799994799189842368620477 Q gi|254780182|r 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 (910) Q Consensus 591 fFTs~Gkvy~l~v~~IP~~sr~skG~pi~nll~l~~~E~I~ail~~~~~~~~~~~~~Lvl~Tk~G~VKkt~l~ef~~~r~ 670 (910) |||+.||||++++|+||++ +++|.|+.|+++++++|+|++++++. ++.+++|+|++|++||+++++|.+.++ T Consensus 519 ~fT~~Grvy~l~v~~lP~~--~~kG~pi~~~l~l~~~E~I~~i~~~~------~d~~lll~T~~G~~K~~~l~~~~~~~k 590 (716) T 1zvu_A 519 FVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPPGATVDHMLMES------DDQKLLMASDAGYGFVCTFNDLVARNR 590 (716) T ss_dssp EEETTSEEEEECTTTSCCC--C---CBSTTTSCCCTTCCEEEEECCC------TTCEEEEEBTTSEEEEEEGGGGCCCST T ss_pred EECCCCCEEEEEEEECCCC--CCCCCCCCCCCCCCCCCEEEEEEECC------CCCEEEEEECCCCEEEEEHHHHCCCCC T ss_conf 8835882799741457677--67886543410479998489987327------886799997589589985136105475 Q ss_pred CCEEEEEECCCCEEEEEEECCC-CCEEEEEECCCEEEEEEHHHCCCCCCCCCCCEEEEECCC------CCEEEEEEEECC Q ss_conf 7227866158985788896189-826999936985999758762354786655357675289------986999897336 Q gi|254780182|r 671 SGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK------GDQVISMAIVLH 743 (910) Q Consensus 671 ~G~~aikLkegD~Li~v~~~~~-~~~Iil~T~~G~~lrF~~~evr~~~GR~a~GVkgIkL~~------~D~Vv~~~vi~~ 743 (910) +|+.||+|++||+|+.|..+++ +++|+++|++|++|||++++||+| || ++||+||+|++ +|.|+++.++++ T Consensus 591 ~Gk~aikLke~Deli~~~~~~~~~d~vl~vT~~Gk~lrF~~~ev~~~-gr-g~GVkgikL~~~~~~~~~d~v~~~~v~~~ 668 (716) T 1zvu_A 591 AGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQL-SK-GKGNKIINIPSAEAARGEDGLAQLYVLPP 668 (716) T ss_dssp TCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEESTTSCBC-SS-BSCEESSCCCHHHHHTTSSCEEEEEEECS T ss_pred CCCEEEEECCCCEEEEEEEECCCCCEEEEECCCCEEEEEEHHHCCCC-CC-CCCCCEEECCCCCCCCCCCEEEEEEEECC T ss_conf 77377876899889989996599988999888982999788998865-75-47712073065555567855999999779 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCEEEEEHH-HCCCCCC Q ss_conf 665420000012223333333455544444444333222223200111012568679999759934530178-8486675 Q gi|254780182|r 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY-DFRISNR 822 (910) Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~IL~vTe~G~GKRt~~~-eyr~q~R 822 (910) . ..++++|++|++|+++.+ +|+.++| T Consensus 669 ~-----------------------------------------------------~~llv~t~~g~~k~~~~~~~~~~~~R 695 (716) T 1zvu_A 669 Q-----------------------------------------------------STLTIHVGKRKIKLRPEELQKVTGER 695 (716) T ss_dssp S-----------------------------------------------------CCEEEEETTEEEEECHHHHTTSBCCT T ss_pred C-----------------------------------------------------CEEEEEECCCEEEECHHHHHHHCCCC T ss_conf 9-----------------------------------------------------86999988980785878830201787 Q ss_pred CCCCEEEEECCC Q ss_conf 774148876067 Q gi|254780182|r 823 SGKGIRATDVSK 834 (910) Q Consensus 823 GgkGv~~ik~~~ 834 (910) ||+|++.+++.+ T Consensus 696 g~kG~~~~~~~k 707 (716) T 1zvu_A 696 GRRGTLMRGLQR 707 (716) T ss_dssp TSCCEECTTCCS T ss_pred CCCCCCCCCCCC T ss_conf 888879977766 No 2 >2wl2_A GYRA, DNA gyrase subunit A; isomerase, aminocoumarin antibiotic, drug target, protein-ligand complex; HET: DNA SM8; 2.62A {Escherichia coli} PDB: 1ab4_A 1x75_A* Probab=100.00 E-value=0 Score=1319.96 Aligned_cols=510 Identities=53% Similarity=0.877 Sum_probs=493.6 Q ss_pred CCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCCCCCHHH Q ss_conf 23566600999998767877799886313754000897367899999998789999981134042556643668870478 Q gi|254780182|r 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92 (910) Q Consensus 13 ~~~i~~~~~~~~m~~syl~Ya~svI~~RAlPd~rDGlKpv~Rrily~m~~~~~~~~~~~~K~a~ivg~v~gkyHPHGd~s 92 (910) .++|++++|+++|++|||+||||||++|||||+|||||||||||||||++++++++++|+|||++||+|||+||||||+| T Consensus 4 ~~~~~~~~~~~~~~~~~l~Ya~~vi~~RaiP~~~DGlKP~qRkil~~~~~~~l~~~~~~~K~a~l~G~v~~~yHpHGe~s 83 (522) T 2wl2_A 4 AREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSA 83 (522) T ss_dssp ------------------CHHHHHHHHHHCCBTTTCCCHHHHHHHHHHHHTTCCTTSCCEEHHHHHHHHHHHTCCSSCTH T ss_pred CCCCEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHCCCCCCHHH T ss_conf 33454612899999999999999998513786224884889899999986278889884253102998874368886899 Q ss_pred HHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEECCCCCC Q ss_conf 99999971220111561314788708877697201357899978999999863076840533068988548503432273 Q gi|254780182|r 93 IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172 (910) Q Consensus 93 iy~a~v~maq~~~~r~plidg~GnfGs~dgd~~AA~RYte~rl~~~~~~~l~~i~~~tv~~~~n~D~~~~EP~vlP~~~P 172 (910) +|+|||||||+||+|+||++|||||||++||+||||||||||||++|..||.++|+++|+|+|||||+..||.|||+.|| T Consensus 84 l~~tiv~maQ~fs~n~~l~~~qg~fgs~~g~~~Aa~RYi~trLs~~~~~l~~~~d~~~l~~~~n~Dg~~~EP~~~pp~iP 163 (522) T 2wl2_A 84 VYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIP 163 (522) T ss_dssp HHHHHHHTTCTTTCSSCSEEEESCBCCTTCCCBCCTTTCEEEECHHHHHHTTTTTSSCSCEEECTTSSSEEESSCCCSSC T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCC T ss_conf 99999999664020470315889999999986432306888887999999862322543767388986316704513574 Q ss_pred CCHHCCCCCEEEHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEE Q ss_conf 21101676101013317898547899999988761877688888863458668874434475889999870120389999 Q gi|254780182|r 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 (910) Q Consensus 173 ~lL~nG~~GIAvGmaTnippHNl~Ev~~a~~~~i~~p~~~~~eL~~~i~GPDFPTGG~I~~~~~i~~~y~tGrG~i~iR~ 252 (910) +||||||+||||||||||||||++|||+||+++|++|++++++||++||||||||||.+.|..|+.++|.||+|+|++|| T Consensus 164 ~vLvNGa~GIgtG~sT~IP~hNp~evi~~~~~~i~~~~~~~~~l~~~i~gPdfP~g~~~~g~~~~~~~~~~G~g~~~~r~ 243 (522) T 2wl2_A 164 NLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRA 243 (522) T ss_dssp HHHHHCEECTTTTCCCEECCCCHHHHHHHHHHHHHCTTCCHHHHHHHCCSCCCTTCCEECCSHHHHHHHHHSEEEEEEEC T ss_pred HHHHCCCCCEEHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCEECCCCHHHHHHHCCCEEEEEEE T ss_conf 89865786321343316899998999999999852765217889851889988876620176107888637970799998 Q ss_pred EEEEEEC-CCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHC Q ss_conf 8865433-678459999246443528999999999987166501445873037465579999479887789999999761 Q gi|254780182|r 253 VSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331 (910) Q Consensus 253 k~~ie~~-~~~k~~ivItEiPY~vnk~~lie~Ia~lv~~~ki~gI~dirDeSdr~giRivielKr~~~~~~vln~Lyk~T 331 (910) +|++|.. +.|+++|+||||||++++++++|+|++++++||+++|+|+||+||++|+|+||++|++++++.++++|||+| T Consensus 244 ~~~ie~~~~~~~~~i~ITELP~~~~t~~~~e~i~~lv~~kki~~i~d~~d~s~~~~vr~vI~lk~~~~~~~~~~~L~k~t 323 (522) T 2wl2_A 244 RAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQT 323 (522) T ss_dssp EEEEEECTTTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTSSCSEEEEEECCCSSCCCEEEEECTTSCHHHHHHHHHTTS T ss_pred EEEEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH T ss_conf 89998314588547999826985779999999999997599775410113578876089996787678899999998643 Q ss_pred CHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH Q ss_conf 01100000024554166300029999999999999999999999999998887789999998740699999986189978 Q gi|254780182|r 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411 (910) Q Consensus 332 ~Lq~sf~~N~~aL~~g~P~~l~Lk~iL~~fi~hR~evi~rRt~~~L~ka~~R~HILeGL~~Al~nIDeVI~iIR~S~d~~ 411 (910) +||+||++||+++++|+|++++|++||++|++||.++++||++|+|+|+++|+|+|+|+++|+.+||++|++||+|++++ T Consensus 324 kL~ts~s~n~~~l~d~~pk~~sl~eIL~~f~~~R~e~~~kR~~~~L~kl~~rl~il~~~~~~i~~Id~ii~iir~sk~~~ 403 (522) T 2wl2_A 324 QLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPA 403 (522) T ss_dssp TTEEEEEEECEEEETTEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHCSSHH T ss_pred HHHHCCCCEEEEEECCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH T ss_conf 27620230389986896258329999999999999999999999999999999887608999983478899987068769 Q ss_pred HHHHHHHHHCCCHHHHHHHHHHCCCCCCCCC--------CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9878776312697889999974022111222--------34452369999999998789999888799999989999999 Q gi|254780182|r 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 (910) Q Consensus 412 eAk~~L~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~f~lSe~QA~AILdMrL~rLt~LE~~kl~~E~~eL~~~ 483 (910) +|+..|+++.|.................... ....|.||+.||+|||+|||+|||++|++||++|+++|.++ T Consensus 404 ~ak~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSe~QadyIL~M~L~~LT~~e~~KL~~E~~~l~~e 483 (522) T 2wl2_A 404 EAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 483 (522) T ss_dssp HHHHHHHHSCEECTTTHHHHC----CCCSCTTCCTTSEESSSEEECCHHHHHHHHHCBGGGGSTHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99998764013430099999872242114310120005556765579999999996499997676599999999999999 Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEC Q ss_conf 998875304989999999998999998405688331001 Q gi|254780182|r 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE 522 (910) Q Consensus 484 I~~l~~IL~s~~~l~~iI~~EL~eik~kygd~RRT~I~~ 522 (910) +++|++||+|++.+|++|++||.+++++||++|||+|.. T Consensus 484 i~eL~~iL~s~~~l~~~i~~EL~elk~ky~~~RrT~I~a 522 (522) T 2wl2_A 484 IAELLRILGSADRLMEVIREELELVREQFGDKRRTEITA 522 (522) T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHCCCCCSEEC- T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC T ss_conf 999999968999999999999999999828987886149 No 3 >2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus} Probab=100.00 E-value=0 Score=1261.00 Aligned_cols=491 Identities=42% Similarity=0.725 Sum_probs=482.9 Q ss_pred CCCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCCCCCH Q ss_conf 43235666009999987678777998863137540008973678999999987899999811340425566436688704 Q gi|254780182|r 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGN 90 (910) Q Consensus 11 ~~~~~i~~~~~~~~m~~syl~Ya~svI~~RAlPd~rDGlKpv~Rrily~m~~~~~~~~~~~~K~a~ivg~v~gkyHPHGd 90 (910) +..+.|.+++|+++|+++|++||||||++|||||+|||||||||||||||++++++++++|+|||++||+|||+|||||| T Consensus 23 ~~~~~i~~~~~~~~~~~~~~~Ya~~vi~~RaiP~~~DGLKP~qRkIL~~~~~~~l~~~~~~~K~A~~vg~v~~~YHpHGe 102 (514) T 2inr_A 23 EVSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGD 102 (514) T ss_dssp ------------------------------CCCBTTTCCCHHHHHHHHHHHHHTCCSSSCCEEHHHHHHHHHHHTCC--- T ss_pred CCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHCCCCCH T ss_conf 30264153449999999999878898773027742248848999999999970788898821007899998865379848 Q ss_pred HHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEECCCC Q ss_conf 78999999712201115613147887088776972013578999789999998630768405330689885485034322 Q gi|254780182|r 91 AAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170 (910) Q Consensus 91 ~siy~a~v~maq~~~~r~plidg~GnfGs~dgd~~AA~RYte~rl~~~~~~~l~~i~~~tv~~~~n~D~~~~EP~vlP~~ 170 (910) +|+|+|||||||+|+++|||++|||||||++|++||||||||||||++|..||.++|+++|+|+|||||+..||+|||+. T Consensus 103 ~Sl~~tiv~mAQ~f~~~~~L~~~~G~fGs~~~~~~Aa~RYi~trLs~~a~~if~~~d~~~l~~~~n~Dg~~~EP~~y~pi 182 (514) T 2inr_A 103 SSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSR 182 (514) T ss_dssp CHHHHHHHHTTCTTTCSSCSEEEESCCCCTTCCCCCCTTTCEEEECTTHHHHSTTTTSSCSCEEECTTSSSEEESSCCCS T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCC T ss_conf 89999999985540056535157899999999851147799988768999997643757426766889973177402576 Q ss_pred CCCCHHCCCCCEEEHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEE Q ss_conf 73211016761010133178985478999999887618776888888634586688744344758899998701203899 Q gi|254780182|r 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 (910) Q Consensus 171 ~P~lL~nG~~GIAvGmaTnippHNl~Ev~~a~~~~i~~p~~~~~eL~~~i~GPDFPTGG~I~~~~~i~~~y~tGrG~i~i 250 (910) ||+||||||+||||||||||||||+.|||+||+++|++|++++++||+++|||||||||+|.+.+|+.++|.||||+|++ T Consensus 183 iP~vLvNGs~GIgtG~sT~IPphNp~evi~~~~~~l~~~~~~~~el~~~~~GPdFptGg~I~~~~~~~~~y~~G~G~i~~ 262 (514) T 2inr_A 183 FPNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIV 262 (514) T ss_dssp SCHHHHHCEECC--CCCCEECCBCHHHHHHHHHHHHHCTTCCHHHHTTTCCSBCCTTCCEEECHHHHHHHHHHSEEEEEE T ss_pred CCHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCEEECCCHHHHHHHCCCEEEEE T ss_conf 73898736776223200377998999999999999649999879996207799899984687761178886268369998 Q ss_pred EEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHH Q ss_conf 99886543367845999924644352899999999998716650144587303746557999947988778999999976 Q gi|254780182|r 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRY 330 (910) Q Consensus 251 R~k~~ie~~~~~k~~ivItEiPY~vnk~~lie~Ia~lv~~~ki~gI~dirDeSdr~giRivielKr~~~~~~vln~Lyk~ 330 (910) ||++++|+.+.|+++|+||||||++++++++++|+++++++|+++|+|+||+||++|+||||++|++++++.+++.|||+ T Consensus 263 ~~~~~ie~~~~g~~~i~ItElP~~~~~~~~~~~i~~l~~~~ki~~i~d~~d~s~~~~i~ivi~~~~~~~~~~~~~~L~k~ 342 (514) T 2inr_A 263 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELKKDVNSESIKNYLYKN 342 (514) T ss_dssp ECEEEECC----CCEEEEEECCTTCCHHHHHHHHHHHHHHTSCC---CEEECCBTTBCCEEEEC------CHHHHHHTTS T ss_pred EEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHC T ss_conf 44899997379826899984355456778999999998559878700303246887329999805762078888899850 Q ss_pred CCHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH Q ss_conf 10110000002455416630002999999999999999999999999999888778999999874069999998618997 Q gi|254780182|r 331 TSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410 (910) Q Consensus 331 T~Lq~sf~~N~~aL~~g~P~~l~Lk~iL~~fi~hR~evi~rRt~~~L~ka~~R~HILeGL~~Al~nIDeVI~iIR~S~d~ 410 (910) |+||+||++||+++++++|+.+++.+||++|++||+++++||++|+|+++++|+|+++|++.++.++|++|++||+|+++ T Consensus 343 t~l~st~~~n~~~l~~~~pk~~~l~eIL~~f~~~R~~~y~kR~~~~L~k~e~rl~il~~~i~~i~~id~vi~iIr~sk~~ 422 (514) T 2inr_A 343 SDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNK 422 (514) T ss_dssp STTEEEEEEECEEEETTEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCCSH T ss_pred CCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHCCCCH T ss_conf 63101222368983399146677899999999999999999999999999999977532312775422144422217998 Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 89878776312697889999974022111222344523699999999987899998887999999899999999988753 Q gi|254780182|r 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 (910) Q Consensus 411 ~eAk~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~lSe~QA~AILdMrL~rLt~LE~~kl~~E~~eL~~~I~~l~~I 490 (910) ++|+..|+++ |+||+.||++||+|||++||+++++||++|+++|.++|++|+++ T Consensus 423 ~e~~~~L~k~--------------------------f~~se~qadyLL~M~L~~LT~eei~kL~~E~~el~~ei~eL~~i 476 (514) T 2inr_A 423 RDAKENLIEV--------------------------YEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHI 476 (514) T ss_dssp HHHHHHHHTT--------------------------SSCCHHHHHHHHTCCGGGGSTTHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHH--------------------------CCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999998874--------------------------59999999999827899870689999999999999999999998 Q ss_pred HCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCC Q ss_conf 0498999999999899999840568833100134345 Q gi|254780182|r 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM 527 (910) Q Consensus 491 L~s~~~l~~iI~~EL~eik~kygd~RRT~I~~~~~~i 527 (910) |+|++.+|+++++||.+++++||+||||+|..+.+++ T Consensus 477 L~s~~~l~~~i~~EL~el~kky~~~RrT~I~~~~~e~ 513 (514) T 2inr_A 477 LDNHDALLNVIKEELNEIKKKFKSERLSLIEAEIEEI 513 (514) T ss_dssp HHCHHHHHHHHHHHHHHHHHHHCCCCCCEEESSCCC- T ss_pred HCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHC T ss_conf 6899999999999999999983898861342666423 No 4 >2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xcr_B* 2xcq_A* 2xco_A* Probab=100.00 E-value=0 Score=1178.69 Aligned_cols=488 Identities=53% Similarity=0.843 Sum_probs=479.9 Q ss_pred CCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCCCC Q ss_conf 76432356660099999876787779988631375400089736789999999878999998113404255664366887 Q gi|254780182|r 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88 (910) Q Consensus 9 ~~~~~~~i~~~~~~~~m~~syl~Ya~svI~~RAlPd~rDGlKpv~Rrily~m~~~~~~~~~~~~K~a~ivg~v~gkyHPH 88 (910) ..-.+.++...+++++|.++|++||||||.+|||||++||||||||||||||+++++.++++|+|||++||+|+|+|||| T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Raip~~~DGlKp~qRkil~~~~~~~~~~~~~~~k~a~~~g~v~~~~~~H 282 (692) T 2xcs_B 203 AELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGKYHPH 282 (692) T ss_dssp ---------EEEHHHHHHHHHHHHHHHHHHHTSSCBTTTCCCHHHHHHHHHHHHTTCCTTSCCEEHHHHHHHHHHHTCCS T ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHCCCC T ss_conf 53461035534189988899999999887740475142176578999999999856788887676316589888650888 Q ss_pred CHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEECC Q ss_conf 04789999997122011156131478870887769720135789997899999986307684053306898854850343 Q gi|254780182|r 89 GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168 (910) Q Consensus 89 Gd~siy~a~v~maq~~~~r~plidg~GnfGs~dgd~~AA~RYte~rl~~~~~~~l~~i~~~tv~~~~n~D~~~~EP~vlP 168 (910) ||+|+|+|+|+|||+|++|+||++|||||||++||+|||||||||||++++..|+.++++++|+|.+||||+..||+++| T Consensus 283 Ge~sl~~tiv~maq~~~~n~~ll~~~G~fGs~~g~~~aa~RYi~~~l~~~~~~~~~~~~~~~~~~~~~~dg~~~EP~~~~ 362 (692) T 2xcs_B 283 GDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRFTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLP 362 (692) T ss_dssp CHHHHHHHHHHHHCTTTCSSCSEEEESCCCCTTCCCCCCTTTCEEEECHHHHHHHTTTTTTCSCEEECTTSSCEEESSCC T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCC T ss_conf 56778788999864352166530015887899999630021687751776887642236535655530255546874478 Q ss_pred CCCCCCHHCCCCCEEEHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCEE Q ss_conf 22732110167610101331789854789999998876187768888886345866887443447588999987012038 Q gi|254780182|r 169 ARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 (910) Q Consensus 169 ~~~P~lL~nG~~GIAvGmaTnippHNl~Ev~~a~~~~i~~p~~~~~eL~~~i~GPDFPTGG~I~~~~~i~~~y~tGrG~i 248 (910) +.+|++||||++||||||||||||||+.|||+|++++|++|+++.++||+++|||||||||.|.|.+|+.++|.||||++ T Consensus 363 p~iP~~LvNG~~GIgtG~sT~IP~hNp~eVi~~i~~~l~~~~~~~~el~~~i~gPdfPtgg~i~g~~g~~~~y~tGrg~~ 442 (692) T 2xcs_B 363 ARFPNLLANGASGIAVGMATNIPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSI 442 (692) T ss_dssp CSSCHHHHHCEEEECSSCEEEECCBCHHHHHHHHHHHHTCTTCCHHHHTTTCCSBCCTTCCEEECSHHHHHHHHHSEEEE T ss_pred CCCCHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCEEECCCCEEEHHCCCCCCE T ss_conf 65638887368752267631567889899999999985498535899984288898998765877754000221787515 Q ss_pred EEEEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCC-CCCEEEEEEECCCCCHHHHHHHH Q ss_conf 99998865433678459999246443528999999999987166501445873037-46557999947988778999999 Q gi|254780182|r 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQL 327 (910) Q Consensus 249 ~iR~k~~ie~~~~~k~~ivItEiPY~vnk~~lie~Ia~lv~~~ki~gI~dirDeSd-r~giRivielKr~~~~~~vln~L 327 (910) ++|+++++++.++|+++|+||||||++++++++|+|++++++||+++|+|++|||+ +.|+||||++|++.+++.++++| T Consensus 443 ~~~~~~~~~~~~~~k~~I~ITELP~g~wt~~yke~L~~lv~~kki~~i~d~~des~~~~~vrivi~~k~~~~~~~~~~~L 522 (692) T 2xcs_B 443 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVRKDANASVILNNL 522 (692) T ss_dssp EEECEEEEEEEETTEEEEEEEECCTTCCHHHHHHHHHHHHHTTCSCCEEEEEECCBTTTBSCEEEEECTTSCHHHHHHHH T ss_pred EEEEEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCEEEEEEEECCCCCHHHHHHHH T ss_conf 89999999994499659999825887778999999999997599776055114566652179999826887889999878 Q ss_pred HHHCCHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 97610110000002455416630002999999999999999999999999999888778999999874069999998618 Q gi|254780182|r 328 YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS 407 (910) Q Consensus 328 yk~T~Lq~sf~~N~~aL~~g~P~~l~Lk~iL~~fi~hR~evi~rRt~~~L~ka~~R~HILeGL~~Al~nIDeVI~iIR~S 407 (910) |++|+||+||++||++|++|+|+++++.+||++|++||.++++||.+|+|+++++|+|||+|+++|+++||+||++||+| T Consensus 523 ~k~tkL~tsis~N~~~l~dg~pk~~~~~eIL~~f~~~Rle~y~KRkey~L~kle~rl~iLegl~~~i~~ID~vIkiIr~s 602 (692) T 2xcs_B 523 YKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRES 602 (692) T ss_dssp HHHSTTEEEEEEECEEEETTEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTC T ss_pred HHHCCCEEEECCEEEEEECCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 87577322102069999889368932599999999999999999999999999999999980999998499999999829 Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99789878776312697889999974022111222344523699999999987899998887999999899999999988 Q gi|254780182|r 408 PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 (910) Q Consensus 408 ~d~~eAk~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~lSe~QA~AILdMrL~rLt~LE~~kl~~E~~eL~~~I~~l 487 (910) +++++|+..|+++ |++|+.||+|||+|||++||++|++||++|+++|.++|++| T Consensus 603 k~~~~a~~~L~~~--------------------------f~lse~QadyLL~M~L~~LT~eeieKL~~E~~el~~ei~eL 656 (692) T 2xcs_B 603 DTDKVAMESLQQR--------------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISEL 656 (692) T ss_dssp SSHHHHHHHHHHH--------------------------HTCCHHHHHHHHTCBGGGGSTTHHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHH--------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9989999999986--------------------------59999999999970999975779999999999999999999 Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEC Q ss_conf 75304989999999998999998405688331001 Q gi|254780182|r 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE 522 (910) Q Consensus 488 ~~IL~s~~~l~~iI~~EL~eik~kygd~RRT~I~~ 522 (910) ++||+|++.+|+++++||.+++++||++|||+|.+ T Consensus 657 ~~iL~s~~~l~~~i~~EL~~lkkky~~~RRT~Ie~ 691 (692) T 2xcs_B 657 ETILADEEVLLQLVRDELTEIRDRFGDDRRTEIQL 691 (692) T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHCCCCCSEEEC T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC T ss_conf 99868999999999999999999828987862158 No 5 >3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} PDB: 3ifz_A* Probab=100.00 E-value=0 Score=1180.31 Aligned_cols=464 Identities=48% Similarity=0.809 Sum_probs=455.5 Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHCCCCCCC Q ss_conf 79988631375400089736789999999878999998113404255664366887047899999971220111561314 Q gi|254780182|r 33 AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112 (910) Q Consensus 33 a~svI~~RAlPd~rDGlKpv~Rrily~m~~~~~~~~~~~~K~a~ivg~v~gkyHPHGd~siy~a~v~maq~~~~r~plid 112 (910) .-|||++|||||++||||||||||||||+++++.++.++.|||++||+|||+||||||+|+|+|||+|||+||+|+||++ T Consensus 2 ~~svi~~RaiP~~~DGLKp~qRkil~~~~~~~l~~~~k~~k~a~~v~e~~~~YHpHGe~Sl~~tiv~mAQ~fsnn~~Ll~ 81 (470) T 3ilw_A 2 NASVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDSLVRMAQPWSLRYPLVD 81 (470) T ss_dssp -----CTTTSCBTTTCCCHHHHHHHHHHHHHTCCTTSCCEEHHHHHHHHHHHTCCCCSTHHHHHHHHHHCTTTCSSCSEE T ss_pred CCCEEHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 86312004477521388589999999999728988986101156899750146888688999999998561020463414 Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEECCCCCCCCHHCCCCCEEEHHHHCCCC Q ss_conf 78870887769720135789997899999986307684053306898854850343227321101676101013317898 Q gi|254780182|r 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 (910) Q Consensus 113 g~GnfGs~dgd~~AA~RYte~rl~~~~~~~l~~i~~~tv~~~~n~D~~~~EP~vlP~~~P~lL~nG~~GIAvGmaTnipp 192 (910) |||||||++||+||||||||||||++|..||.++|.++|+|.|||||+..||++||+.+|++||||++|||||||||||| T Consensus 82 ~~G~FGs~~g~~aAa~RYi~t~Ls~~~~~if~~~d~~~l~~~~n~Dg~~~EP~~y~piiP~vLvNG~~GIgtG~sT~IP~ 161 (470) T 3ilw_A 82 GQGNFGSPGNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPP 161 (470) T ss_dssp EESCCCCSSSCCCCCTTSCEEEECHHHHHHHTTGGGTCSCEEECTTSSSEEESSCCCSSCHHHHHCEECSSTTCSCEECC T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEEEECCCCCC T ss_conf 78999999999764413688744189999973432041046756578645872016436299863777525300036776 Q ss_pred CCHHHHHHHHHHHHHCCCCCHHH----HHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEEEEEECCCCCEEEEE Q ss_conf 54789999998876187768888----88634586688744344758899998701203899998865433678459999 Q gi|254780182|r 193 HNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268 (910) Q Consensus 193 HNl~Ev~~a~~~~i~~p~~~~~e----L~~~i~GPDFPTGG~I~~~~~i~~~y~tGrG~i~iR~k~~ie~~~~~k~~ivI 268 (910) ||+.|||+||+++|++|+++..+ +|++++||||||||.|.|..|+.++|+||+|++++|++|++|+...|+|+|+| T Consensus 162 ~Np~evi~~~~~~l~~~~~~~~~~~~~~~~~~~gPdfp~g~~i~g~~~~~~~y~~G~g~~~~~~~~~iee~~~gk~~i~I 241 (470) T 3ilw_A 162 HNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQGTADAYKTGRGSIRMRGVVEVEEDSRGRTSLVI 241 (470) T ss_dssp CCHHHHHHHHHHHHHTTTCCHHHHHHHHHHHCCSCCCTTCCEEECSHHHHHHHHHSEEEEEEECEEEEEECTTCCEEEEE T ss_pred CCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCEEECCCCHHHHHHCCCCEEEEEEEEEEEECCCCCEEEEE T ss_conf 01567999999986477421035589986157789989876676662446674259824999879999975798258999 Q ss_pred ECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH-CCCCCEEEEEEECCCCCHHHHHHHHHHHCCHHCCCCCEEEEEECC Q ss_conf 2464435289999999999871665014458730-374655799994798877899999997610110000002455416 Q gi|254780182|r 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY 347 (910) Q Consensus 269 tEiPY~vnk~~lie~Ia~lv~~~ki~gI~dirDe-Sdr~giRivielKr~~~~~~vln~Lyk~T~Lq~sf~~N~~aL~~g 347 (910) |||||++++++++++|++++.+||+++|+|++|+ |++.|+||||++|++++++.++++|||+|+||+||++||+||.|| T Consensus 242 tElP~~~~~~~~~e~i~~~~~~kk~~~i~di~de~s~~~~vrivI~lk~~~~~~~~~~~L~k~tkL~ts~s~n~~~l~d~ 321 (470) T 3ilw_A 242 TELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDG 321 (470) T ss_dssp EECCTTCCHHHHHHHHHHHHHTTSCTTEEEEEECCBTTTBCCEEEEECTTSCHHHHHHHHHHHSTTEEEEEEECEEEETT T ss_pred EEECCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCEEEEECCEEEEEECC T ss_conf 86214454889999999997568867734302034777654899852687778999999998558066650369999899 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHH Q ss_conf 63000299999999999999999999999999988877899999987406999999861899789878776312697889 Q gi|254780182|r 348 KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 (910) Q Consensus 348 ~P~~l~Lk~iL~~fi~hR~evi~rRt~~~L~ka~~R~HILeGL~~Al~nIDeVI~iIR~S~d~~eAk~~L~~~~~~~~~~ 427 (910) +|+.+++++||++|++||.++++||.+|+|+++++|+|+|+|+++++.+||++|.+||+|++.++|++.|++. T Consensus 322 ~pk~~~~~eIL~~f~~~R~~~y~kR~~~~L~k~~~rl~il~~~~~~i~~id~~i~iir~s~~~~~~k~~l~k~------- 394 (470) T 3ilw_A 322 VPRTLRLDQLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARAGLIEL------- 394 (470) T ss_dssp EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHCSSHHHHHHHHHHH------- T ss_pred EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH------- T ss_conf 7147379999999999999999999999999999999999759999970277788887158889999987774------- Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH Q ss_conf 99997402211122234452369999999998789999888799999989999999998875304989999999998999 Q gi|254780182|r 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLS 507 (910) Q Consensus 428 ~~~~~~~~~~~~~~~~~~~f~lSe~QA~AILdMrL~rLt~LE~~kl~~E~~eL~~~I~~l~~IL~s~~~l~~iI~~EL~e 507 (910) |+||+.||++||+|||++||++|+++|++|+++|.+++++|++||+|++.+|+++++||.+ T Consensus 395 -------------------~~lse~qadyLL~M~L~~LT~ee~~kL~~E~~~l~~ei~~L~~il~~~~~l~~~i~~EL~~ 455 (470) T 3ilw_A 395 -------------------LDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDELAE 455 (470) T ss_dssp -------------------HTCCHHHHHHHHTCBGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH T ss_pred -------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH T ss_conf -------------------3999999999985199987168899999999999999999999968999999999999999 Q ss_pred HHHHCCCCCCCEEEC Q ss_conf 998405688331001 Q gi|254780182|r 508 VKDELDTPRRTRIVE 522 (910) Q Consensus 508 ik~kygd~RRT~I~~ 522 (910) ++++||+||||+|+. T Consensus 456 l~~k~~~~RrT~I~~ 470 (470) T 3ilw_A 456 IVDRHGDDRRTRIIA 470 (470) T ss_dssp HHHHHCCCCCSEEEC T ss_pred HHHHHCCCCCCCCCC T ss_conf 999828987884379 No 6 >2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* Probab=100.00 E-value=0 Score=1188.48 Aligned_cols=489 Identities=44% Similarity=0.749 Sum_probs=480.9 Q ss_pred CCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCCCCCHHHH Q ss_conf 35666009999987678777998863137540008973678999999987899999811340425566436688704789 Q gi|254780182|r 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93 (910) Q Consensus 14 ~~i~~~~~~~~m~~syl~Ya~svI~~RAlPd~rDGlKpv~Rrily~m~~~~~~~~~~~~K~a~ivg~v~gkyHPHGd~si 93 (910) .+|.+++|++.|.++|++||||||.+|||||++||||||||||||||++++++++++|+|||++||+|||+||||||+|+ T Consensus 2 ~~~~~~~~~~~~~~~~~~ya~~~i~~RaiP~~~DGLKp~qRkiL~~~~~~~l~~~~~~~KvA~~~g~v~~~yHpHGe~Sl 81 (496) T 2nov_A 2 SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDSSI 81 (496) T ss_dssp ---------------------------CCCCTTTCCCHHHHHHHHHHHHTTCCTTSCCEEHHHHHHHHHHHTCCSCSTTT T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHCCCCCCHHHH T ss_conf 98723669999999999888898661148842148848998999998862788898802426379988741588778899 Q ss_pred HHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEECCCCCCC Q ss_conf 99999712201115613147887088776972013578999789999998630768405330689885485034322732 Q gi|254780182|r 94 YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173 (910) Q Consensus 94 y~a~v~maq~~~~r~plidg~GnfGs~dgd~~AA~RYte~rl~~~~~~~l~~i~~~tv~~~~n~D~~~~EP~vlP~~~P~ 173 (910) |+|+|+|||+||+|+||++|||||||++|++|||||||||||++++..++.++|.++|+|.+||||+..||+++|+.||+ T Consensus 82 ~~tiv~mAq~fsnn~~Ll~~~G~FGsr~~~~~Aa~RYi~~~l~~~~~~lf~~~d~~~~~~~~~~dg~~~EP~~y~piiP~ 161 (496) T 2nov_A 82 YDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPN 161 (496) T ss_dssp HHHHHHTTCTTTSSSCSEEEESCSCCSSSCCCCCTTTCEEEECHHHHTTSTTCCCCCSCEEECSSSSSEEESSCCCSSCH T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEECCCCCH T ss_conf 99999997874247644037788788899704468889998888798752564423234655888862277000465758 Q ss_pred CHHCCCCCEEEHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEE Q ss_conf 11016761010133178985478999999887618776888888634586688744344758899998701203899998 Q gi|254780182|r 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 (910) Q Consensus 174 lL~nG~~GIAvGmaTnippHNl~Ev~~a~~~~i~~p~~~~~eL~~~i~GPDFPTGG~I~~~~~i~~~y~tGrG~i~iR~k 253 (910) +||||++||||||||||||||+.|||+||+++|++|++++++||+++|||||||||+|.+.+++.++|++|+|+|++||+ T Consensus 162 vLvNG~~GIgtG~sT~IP~~Np~evi~~~~~~l~~~~~~~~~l~~~~~~pdfptGg~i~~~~~~~~~y~~g~G~i~~~~~ 241 (496) T 2nov_A 162 LLVNGSTGISAGYATDIPPHNLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 241 (496) T ss_dssp HHHHCEECCC-CCCCEECCCCHHHHHHHHHHHHHCTTCCHHHHTTTCCSCCCTTCCEECCHHHHHHHHHHSEEECCEECE T ss_pred HHHCCCCCEEEEHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCEEECCHHHHHHHHCCCCEEEEEEE T ss_conf 87547776242001057777889999999998509999989998637889899874554716679998569943999667 Q ss_pred EEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHCCH Q ss_conf 86543367845999924644352899999999998716650144587303746557999947988778999999976101 Q gi|254780182|r 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333 (910) Q Consensus 254 ~~ie~~~~~k~~ivItEiPY~vnk~~lie~Ia~lv~~~ki~gI~dirDeSdr~giRivielKr~~~~~~vln~Lyk~T~L 333 (910) +++|..+.|+++|+||||||++++++++++|++|++++|+++|+|++|+|+++|+||||++|++.+++.++++|||+|+| T Consensus 242 ~~~e~~~~~~~~i~ITELP~g~~t~~~~e~l~~l~~~~ki~~i~d~~Des~~~~v~i~I~lk~~~~~~~~~~~l~k~t~l 321 (496) T 2nov_A 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVLNYLFKYTDL 321 (496) T ss_dssp EEEEECSTTCEEEEEEECCTTCCHHHHHHHTTHHHHTTSCC---CCEEC-----CCEEC----CCCCTTHHHHHHHSSTT T ss_pred EEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHCEEE T ss_conf 89997269834899997066565778999999876438767701214447888508999815322467789999861010 Q ss_pred HCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH Q ss_conf 10000002455416630002999999999999999999999999999888778999999874069999998618997898 Q gi|254780182|r 334 QSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413 (910) Q Consensus 334 q~sf~~N~~aL~~g~P~~l~Lk~iL~~fi~hR~evi~rRt~~~L~ka~~R~HILeGL~~Al~nIDeVI~iIR~S~d~~eA 413 (910) |++|++||+++.+++|+.+++++||+.|++||.++++||.+|+|+++++|+|+|+|+++++++||++|.+||+|++.++| T Consensus 322 ~st~~~n~~~~~~~~pk~~sv~eIL~~f~~~R~~~~~rR~~~~l~~~e~rl~il~~~~~fi~~i~~~i~~ir~~k~~~~~ 401 (496) T 2nov_A 322 QINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA 401 (496) T ss_dssp EECCEEECEEEETTEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHTTSSSHHHH T ss_pred EEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH T ss_conf 01056555555305884056999999989999999999999999999999999862899998565678888717987999 Q ss_pred HHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 78776312697889999974022111222344523699999999987899998887999999899999999988753049 Q gi|254780182|r 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 (910) Q Consensus 414 k~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~lSe~QA~AILdMrL~rLt~LE~~kl~~E~~eL~~~I~~l~~IL~s 493 (910) +..|++. |+||+.||++||+|||++||++|++||++|+++|.++|++|++||+| T Consensus 402 ~~~l~~~--------------------------f~lse~q~dyLL~M~L~~LT~~e~~kL~~E~~~l~~ei~~L~~il~~ 455 (496) T 2nov_A 402 KENLKVS--------------------------YDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 455 (496) T ss_dssp HSSCCC---------------------------CCCCHHHHHHHHTCBGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_pred HHHHHHH--------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 9999986--------------------------59999999999975899975899999999999999999999999689 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCC Q ss_conf 89999999998999998405688331001343453 Q gi|254780182|r 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 (910) Q Consensus 494 ~~~l~~iI~~EL~eik~kygd~RRT~I~~~~~~i~ 528 (910) ++.+++++++||.+++++||+||||+|.+..++++ T Consensus 456 ~~~l~~~~~~eL~~l~~k~~~~RrT~i~~~~~~~~ 490 (496) T 2nov_A 456 ERTMYNLMKKELREVKKKFATPRLSSLEDTAKALE 490 (496) T ss_dssp TTHHHHHHHHHHHHHHHHHCCCCCSBC-------- T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH T ss_conf 99999999999999999838988860748676664 No 7 >2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A* Probab=100.00 E-value=0 Score=1112.15 Aligned_cols=495 Identities=40% Similarity=0.656 Sum_probs=472.4 Q ss_pred CCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCCCC Q ss_conf 76432356660099999876787779988631375400089736789999999878999998113404255664366887 Q gi|254780182|r 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88 (910) Q Consensus 9 ~~~~~~~i~~~~~~~~m~~syl~Ya~svI~~RAlPd~rDGlKpv~Rrily~m~~~~~~~~~~~~K~a~ivg~v~gkyHPH 88 (910) ..-.+.....+++.+.+.+.|+.||||||.+|||||++||||||||||||+|+++++.++.++.|||++||+|+|+|||| T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~ys~~~~~~R~iP~~~DGLKp~QRkIL~~~~k~~l~~~~k~~k~a~~vg~v~~~~yhH 345 (767) T 2xkj_E 266 TSLAHHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSARTVGDVLGKYHPH 345 (767) T ss_dssp --------CEEEHHHHHHHHHHHHHHHHHHHHTCCBTTTSCCHHHHHHHHHHHHTTCCTTSCCEEHHHHHHHHHHHTCCS T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCC T ss_conf 55565454564299999999987777766640256154405588899999999874057741788887889886233888 Q ss_pred CHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEEC Q ss_conf 0478999999712201115613147887088776-972013578999789999998630768405330689885485034 Q gi|254780182|r 89 GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG-DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167 (910) Q Consensus 89 Gd~siy~a~v~maq~~~~r~plidg~GnfGs~dg-d~~AA~RYte~rl~~~~~~~l~~i~~~tv~~~~n~D~~~~EP~vl 167 (910) ||+|+|+|+|+|||+|++|+||++|||||||++| ++|||||||||||++++..++.++|.++++|.+||||+..||+++ T Consensus 346 Ge~Sl~~tiv~MAQ~fsnNipLl~p~GqFGsr~gg~daAa~RYI~t~Ls~~~~~if~~~D~~~l~y~~~~d~~~~eP~~y 425 (767) T 2xkj_E 346 GDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRYTEAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITL 425 (767) T ss_dssp CHHHHHHHHHHHHCTTTCSSCSEECSSCCCBTTBTTCCCCTTTCEEEECGGGHHHHTTTTTTCSCEEECTTSSSEEESSC T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCEECCCCCEECCCCC T ss_conf 61577788999724543187650114576766899444557888736788899861055731330311789826677522 Q ss_pred CCCCCCCHHCCCCCEEEHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCC-CHHHHHHHHHHCCC Q ss_conf 32273211016761010133178985478999999887618776888888634586688744344-75889999870120 Q gi|254780182|r 168 CARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRG 246 (910) Q Consensus 168 P~~~P~lL~nG~~GIAvGmaTnippHNl~Ev~~a~~~~i~~p~~~~~eL~~~i~GPDFPTGG~I~-~~~~i~~~y~tGrG 246 (910) |..+|++||||++||||||||||||||+.|||++|+++|++++++.+++++++|||||||||.|. +.+++.++|.||+| T Consensus 426 ~piIPmvLVNG~~GIgtG~ST~IP~hNp~eII~~i~~~l~~~~~~~e~~~~~~p~p~~p~g~~i~~~~~~~~~~~~~g~G 505 (767) T 2xkj_E 426 PARVPNILLNGTTGIAVGMATDIPPHNLREVVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRG 505 (767) T ss_dssp CCSSCHHHHHCEEEEETTEEEEECCCCHHHHHHHHHHHHHCTTCCHHHHHHHCCSCCCSSSCEECCCHHHHHHHHHHSEE T ss_pred CCCCHHHHHCCCCCEEHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCEEECCHHHHHHHHHCCCC T ss_conf 65353998647864102443177987789999999999728655646786215789899874796688888887762897 Q ss_pred EEEEEEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCC-CEEEEEEECCC-CCHHHHH Q ss_conf 389999886543367845999924644352899999999998716650144587303746-55799994798-8778999 Q gi|254780182|r 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIELKRG-ASADVIL 324 (910) Q Consensus 247 ~i~iR~k~~ie~~~~~k~~ivItEiPY~vnk~~lie~Ia~lv~~~ki~gI~dirDeSdr~-giRivielKr~-~~~~~vl 324 (910) ++.+||+++++ +++|+||||||++++++++++|.++++++|++++.|++|+|+.+ ++|+|++++++ .+++.++ T Consensus 506 ~~~~r~~~~i~-----~~~I~ITELPig~wt~~yke~L~~li~~kki~~i~di~D~s~~~~~irivi~~k~~~~~~e~~~ 580 (767) T 2xkj_E 506 SYRMRAVYTIE-----KNEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVIVLRSNRIDAEAVM 580 (767) T ss_dssp EEEEECEEEEE-----TTEEEEEECCTTCCHHHHHHHHHHHHHTTCCTTEEEEEECCCSSCSSCEEEEESCTTSCHHHHH T ss_pred CEEEEEEEEEC-----CCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCEEEEEECCCCCCCHHHHH T ss_conf 17874368970-----6549999528725677799999999975997764212332567786699994476647999999 Q ss_pred HHHHHHCCHHCCCCCEEEEEE-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999976101100000024554-1663000299999999999999999999999999988877899999987406999999 Q gi|254780182|r 325 NQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRI 403 (910) Q Consensus 325 n~Lyk~T~Lq~sf~~N~~aL~-~g~P~~l~Lk~iL~~fi~hR~evi~rRt~~~L~ka~~R~HILeGL~~Al~nIDeVI~i 403 (910) +.|||+|+||++|++||+++. +|+|+.+++.+||++|++||.+++.||.+|+|+++++|+|||+||++|+.+||+||++ T Consensus 581 ~~L~k~t~L~~s~s~N~~~i~~~g~~Ky~s~~EIL~eF~~~Rl~~y~KRkey~L~kle~rl~iLegli~~~~~iD~vI~i 660 (767) T 2xkj_E 581 SHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKKTVTRRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRI 660 (767) T ss_dssp HHHHHHSTTEEEEEEECEEECTTSCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH T ss_pred HHHHHHHCCCCCCCHHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99986401012110468998559974667899999999999999999999999999999999998299999829999999 Q ss_pred HHHCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 86189978987877631269788999997402211122234452369999999998789999888799999989999999 Q gi|254780182|r 404 IRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 (910) Q Consensus 404 IR~S~d~~eAk~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~lSe~QA~AILdMrL~rLt~LE~~kl~~E~~eL~~~ 483 (910) ||+|+++ +..|+++ |+||+.||+|||+|||++||++|+++|++|+++|.++ T Consensus 661 Ir~s~~~---k~~L~~~--------------------------f~l~e~qadyLL~M~L~~LTk~e~~kL~~E~~el~~e 711 (767) T 2xkj_E 661 IREEDQP---KPVLMEH--------------------------FNIDEIQAEAILELKLRHLAKLEEMEIRHEQDELSAK 711 (767) T ss_dssp HHHCSSH---HHHHHHH--------------------------HTCCHHHHHHHHHSCHHHHHHCCHHHHHHHHHHHHHH T ss_pred HHCCCCH---HHHHHHH--------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9827846---8999986--------------------------5999999999998699984524799999999999999 Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCC--CCCCCCCCCCCCC Q ss_conf 99887530498999999999899999840568833100134--3453010145678 Q gi|254780182|r 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVRED 537 (910) Q Consensus 484 I~~l~~IL~s~~~l~~iI~~EL~eik~kygd~RRT~I~~~~--~~i~~EdlI~~E~ 537 (910) +++|+++|+|++.+++++++||.+++++||+||||+|.+.. .+++.||+|++|. T Consensus 712 i~eL~~iL~s~~~l~~~i~~EL~el~kkyg~~RrT~I~~~~e~~~~~~e~~i~~e~ 767 (767) T 2xkj_E 712 AAIIREQLENPESLKNLIISELKEDAKKFGDERRSPIVARAEAVQIKEQDLMPAET 767 (767) T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCSSCBCCCCCCCCC---------- T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHCCCCCC T ss_conf 99999997899999999999999999981898873212665435676533577789 No 8 >3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A* Probab=100.00 E-value=0 Score=922.35 Aligned_cols=484 Identities=17% Similarity=0.220 Sum_probs=406.1 Q ss_pred CCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCC Q ss_conf 88764323566600999998767877799886313754000897367899999998789999981134042556643668 Q gi|254780182|r 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86 (910) Q Consensus 7 ~~~~~~~~~i~~~~~~~~m~~syl~Ya~svI~~RAlPd~rDGlKpv~Rrily~m~~~~~~~~~~~~K~a~ivg~v~gkyH 86 (910) +++...+..+.++++++.|..+|+.||||++. |||||++||||||||||||+|+++++.++.++.|||++||+++| || T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-RaiP~~~DGlKp~qRkil~~~~~~~~~~~~k~~~~a~~v~~~~~-yh 315 (757) T 3l4j_A 238 EPGTVLDPTLKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTA-YH 315 (757) T ss_dssp CTTCCCCSSCSEECHHHHHHHTHHHHHHHHHH-HHSCBTTTCCCHHHHHHHHHHHHTTTTSCEEHHHHHHHHHHHTT-CC T ss_pred CCCCEECCCCCEEEHHHHHHHHHHHHHHHHHH-HHCCCHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHC-CC T ss_conf 65401048865233899888989998798898-61762331355899999999986189976771442421134306-88 Q ss_pred CCCHHHHHHHHHHHCCCH--HCCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCC Q ss_conf 870478999999712201--115613147887088--7769720135789997899999986307684053306898854 Q gi|254780182|r 87 PHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ 162 (910) Q Consensus 87 PHGd~siy~a~v~maq~~--~~r~plidg~GnfGs--~dgd~~AA~RYte~rl~~~~~~~l~~i~~~tv~~~~n~D~~~~ 162 (910) |||+|+|+|||+|||+| |+|+||++||||||| .+|++||||||||||||+++..||.++|+++|+|.+| ||... T Consensus 316 -HGe~Sl~~aiv~maQ~~~gsnn~pLl~~~GnFGsr~~~g~~~AA~RYi~~rls~~~~~lf~~~D~~~l~y~~~-dg~~~ 393 (757) T 3l4j_A 316 -HGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQE-DEKTV 393 (757) T ss_dssp -SCHHHHHHHHHHHHCCSTTSCSSCSBCCBSCCCCTTTTTTTCCCTTTCEECBCTTHHHHSCGGGGGGSCEEEC-SSSEE T ss_pred -CCCHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCC-CCCEE T ss_conf -8841678999998611130576200036788566678898644578999863053675503356660113568-87622 Q ss_pred CCEECCCCCCCCHHCCCCCEEEHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH Q ss_conf 85034322732110167610101331789854789999998876187768888886345866887443447588999987 Q gi|254780182|r 163 EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242 (910) Q Consensus 163 EP~vlP~~~P~lL~nG~~GIAvGmaTnippHNl~Ev~~a~~~~i~~p~~~~~eL~~~i~GPDFPTGG~I~~~~~i~~~y~ 242 (910) ||++||+.||+||||||+|||||||||||||||.|||+||+++|++|++ .+++.+++||++++.+ T Consensus 394 EP~~y~p~iP~lLvNGa~GIavG~aTnIPphNp~eVi~~~~~~i~~~~~--~~~~p~~~Gf~g~i~~------------- 458 (757) T 3l4j_A 394 EPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEEL--EQMHPWFRGWTGTIEE------------- 458 (757) T ss_dssp EESCCCCSSCHHHHHCEEEECSSCEEEECCCCHHHHHHHHHHHHTTCCC--CCCCCCCTTCCSEEEE------------- T ss_pred CCCCCCCCCHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHCCCHH--HHCCCCCCCCCCCCCC------------- T ss_conf 5630232016888741456004641377898868999999998187145--4317875788775210------------- Q ss_pred HCCCEEEEEEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHH-CCCCCH-HHHHHHHCCCCCEEEEEEECCCCCH Q ss_conf 01203899998865433678459999246443528999999999987-166501-4458730374655799994798877 Q gi|254780182|r 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR-EKRIVD-IADLRDESDRQGYRVVIELKRGASA 320 (910) Q Consensus 243 tGrG~i~iR~k~~ie~~~~~k~~ivItEiPY~vnk~~lie~Ia~lv~-~~ki~g-I~dirDeSdr~giRivielKr~~~~ 320 (910) ++.|+++++|+++. .|+++|+|||||||+++++++|+|++++. ++|+.+ |.|++| |+++|+||||++|+++++ T Consensus 459 ~~~g~~~~~g~~e~----~~~~~I~ITELP~gv~t~~~~e~i~~~l~~~~Ki~~~i~d~~d-~s~~~Vr~vI~lk~~~~~ 533 (757) T 3l4j_A 459 IEPLRYRMYGRIEQ----IGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEE-QHDDNIKFIITLSPEEMA 533 (757) T ss_dssp EETTEEEEECEEEE----EETTEEEEEECCTTCCHHHHHHHHHHHHHCCSSSCCCCSEEEE-CCSSSCCEEEECCHHHHH T ss_pred CCCCEEEEEEEEEE----CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHCCC-CCCCCEEEEEEECCCCCH T ss_conf 14416999999997----2763599983673144889999998765024545553000114-567622799998166651 Q ss_pred HHHHHHHHHHCCHHCCCCCEEEEEECC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH- Q ss_conf 899999997610110000002455416---6300029999999999999999999999999998887789999998740- Q gi|254780182|r 321 DVILNQLYRYTSLQSLFSVNMVALNGY---KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN- 396 (910) Q Consensus 321 ~~vln~Lyk~T~Lq~sf~~N~~aL~~g---~P~~l~Lk~iL~~fi~hR~evi~rRt~~~L~ka~~R~HILeGL~~Al~n- 396 (910) +.+++.|||+|.||++|++|++++.|. .|+.+++++||++|++||.+++.||.+|.|++++.++|+++..+..+.. T Consensus 534 ~~~~~~l~k~~kL~ss~s~~Nm~l~d~~g~i~k~~sl~eIL~~f~~~Rl~~y~kRk~~ll~~l~~eL~~l~~k~rFI~~v 613 (757) T 3l4j_A 534 KTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMI 613 (757) T ss_dssp HHHHHCHHHHTTCEEEEECSCCEEECTTSCEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 77765366543211235256799984889762018999999999999999999999999999999999987289999775 Q ss_pred -----------HHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCC-----------CCCCCCCCCCCCCHHHH Q ss_conf -----------69999998618997898787763126978899999740221-----------11222344523699999 Q gi|254780182|r 397 -----------LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS-----------SYTIGSDGTMYLSEVQT 454 (910) Q Consensus 397 -----------IDeVI~iIR~S~d~~eAk~~L~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~f~lSe~QA 454 (910) .|+||++||+++.+..++..++...|............... .........+..+..|+ T Consensus 614 i~~~I~I~~~~k~eIi~~L~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~y 693 (757) T 3l4j_A 614 IEKELTVTNKPRNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTY 693 (757) T ss_dssp HTTSCCCSSSCHHHHHHHHHHTTCCEECSSCCEECCC------------------------------------CTTTCBS T ss_pred HHCEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCHHHH T ss_conf 41113301688899999999679933446665430230466776654310011121000000234444320100134568 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH----HHHHHHHHHHHHHCCCCC Q ss_conf 99998789999888799999989999999998875304989999----999998999998405688 Q gi|254780182|r 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL----GIIKQELLSVKDELDTPR 516 (910) Q Consensus 455 ~AILdMrL~rLt~LE~~kl~~E~~eL~~~I~~l~~IL~s~~~l~----~iI~~EL~eik~kygd~R 516 (910) +|||+|||++||++++++|++|++++.+++++|++. +.+.+| +.+.+|+.+..++++++| T Consensus 694 dYLL~M~L~~LT~eevekL~~E~~~l~~Ei~~L~~~--t~~~lW~~DL~~l~~e~~k~~~~~~e~R 757 (757) T 3l4j_A 694 EYLLGMRIWSLTKERYQKLLKQKQEKETELENLLKL--SAKDIWNTDLKAFEVGYQEFLQRDAEAR 757 (757) T ss_dssp HHHHTSCGGGGSHHHHHHHHHHHHHHHHHHHHHHTC--CHHHHHHHHHHHHHHHHHHHHHHHHHTC T ss_pred HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 799838588877999999999999999999999868--9999999999999999999998752379 No 9 >3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV} Probab=100.00 E-value=0 Score=624.77 Aligned_cols=354 Identities=37% Similarity=0.580 Sum_probs=314.0 Q ss_pred CCCCCCCEEEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEECCCCEEEEEECCCCEEEEECCCCCCCC Q ss_conf 01456781899907970523310000023345652110001464101011332377739999548939998200043224 Q gi|254780182|r 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 (910) Q Consensus 531 dlI~~E~vvV~lS~~GyIKr~~~~~yr~Q~RggkG~~~~~~ke~D~v~~~~~~~t~d~LLfFTs~Gkvy~l~v~~IP~~s 610 (910) |||++|+|+|++|+.|||||+|+++|++|+|||+|..++++|++|++.+++.|+|||+||||||+|+||+++||+||+++ T Consensus 2 dlI~~e~v~V~lT~~GyiKR~~~~~~~~q~rg~~g~~~~~~k~~D~~~~~~~~~t~d~ll~fT~~G~vy~l~v~~iP~~~ 81 (370) T 3l6v_A 2 DLIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAG 81 (370) T ss_dssp CCCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC T ss_pred CCCCCCCEEEEEECCCEEEEEEHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCC T ss_conf 86778888999958986897317996420268988323625788538999998089879999389779999830176778 Q ss_pred CCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEECHHHHHHCCCCCEEEEEECCCCEEEEEEEC Q ss_conf 44565541245453655620025663012566687179999479918984236862047772278661589857888961 Q gi|254780182|r 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC 690 (910) Q Consensus 611 r~skG~pi~nll~l~~~E~I~ail~~~~~~~~~~~~~Lvl~Tk~G~VKkt~l~ef~~~r~~G~~aikLkegD~Li~v~~~ 690 (910) |+++|.||.|++++.++|+|+++++++++. +.+||+|+|++|+|||+++++|.+.+++|++||+|+++|+|++|.++ T Consensus 82 ~~~~G~~l~~ll~~~~~e~i~~~~~~~~~~---~~~~lv~~T~~G~iKr~~l~~f~~~~~~g~~aikLk~~Delv~v~~~ 158 (370) T 3l6v_A 82 SNARGRPIINWIPLESGERVQAVLPVREYA---DNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALT 158 (370) T ss_dssp TTSCCEEGGGSCCCCTTCCEEEEEEESCCC---TTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEE T ss_pred CCCCCCEEEECCCCCCCCCEEEEEEECCCC---CCCEEEEEECCCCEEECCHHHHHHCCCCCCEEEECCCCCEEEEEEEE T ss_conf 666681600013557786168999904467---77669999789858966579941113354078984899879978974 Q ss_pred CCCCEEEEEECCCEEEEEEHHHCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 89826999936985999758762354786655357675289986999897336665420000012223333333455544 Q gi|254780182|r 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 (910) Q Consensus 691 ~~~~~Iil~T~~G~~lrF~~~evr~~~GR~a~GVkgIkL~~~D~Vv~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 770 (910) +++++|+++|++|++|||++++||+| ||+|+||+||+|+++|+||+|.++.+......+.... T Consensus 159 ~~~~~i~l~T~~G~~lrf~~~~v~~~-gr~a~GVk~i~L~~~d~vv~~~v~~~~~~~~~~~~~~---------------- 221 (370) T 3l6v_A 159 DGDRDVLLFASNGKTVRFGESTVRSM-GRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDE---------------- 221 (370) T ss_dssp CSCCEEEEEETTSEEEEEEGGGSCBC-CTTCCCEECCCCCTTCCEEEEEEECCC-------------------------- T ss_pred CCCEEEEEEECCCEEEEEEECEECCC-CCCCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCC---------------- T ss_conf 59813999931651899860113236-8765643667708999899989641555432110022---------------- Q ss_pred CCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCEEEEEHHHCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCC Q ss_conf 44444433322222320011101256867999975993453017884866757741488760677776868999972899 Q gi|254780182|r 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 (910) Q Consensus 771 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~IL~vTe~G~GKRt~~~eyr~q~RGgkGv~~ik~~~~n~~g~lv~~~~V~~~ 850 (910) .......................+++++|++|++||+||+++++||.|+|||+|++++++.++ .|.||+++.|.++ T Consensus 222 --~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~vT~~G~~Kr~~~~e~~~~~Rg~~G~~~~k~~~~--~d~lv~~~~v~~~ 297 (370) T 3l6v_A 222 --SAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTER--NGKLVRAVLLGST 297 (370) T ss_dssp ---------------------------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTT--TCSEEEEEEECTT T ss_pred --CHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEECCHHHCCCCCCCCCCEEEEEECCC--CCEEEEEEEECCC T ss_conf --001100134544310000013678507999716884276777765733588665166687478--7349999992699 Q ss_pred CEEEEEECCCEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCC Q ss_conf 6499994599899999010554451568738898089987999998356655566555 Q gi|254780182|r 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 (910) Q Consensus 851 DeIlliT~~G~iiR~~v~~I~~~gR~a~GV~i~~L~~~D~Vv~va~i~~~e~~de~e~ 908 (910) |+|||+|++|+++|+++++||.+||+|+||++|+|+++|+|++|++++.+..+++... T Consensus 298 d~ill~T~~G~~~r~~~~~I~~~gR~t~Gv~~i~L~~~d~v~sv~~v~~~~~e~~~~~ 355 (370) T 3l6v_A 298 DEVMLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQAVERLDASLEEPEDVV 355 (370) T ss_dssp CEEEEEETTCCEEEEEGGGSCBCCSSSCCEESSCCCTTCCEEEEEEECCCC------- T ss_pred CEEEEEECCCEEEEEEHHHCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCC T ss_conf 7599995899899989345476788789847688899999999998166566854333 No 10 >1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli} Probab=100.00 E-value=0 Score=600.49 Aligned_cols=307 Identities=43% Similarity=0.743 Sum_probs=294.2 Q ss_pred CCCCEEEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCC Q ss_conf 56781899907970523310000023345652110001464101011332377739999548939998200043224445 Q gi|254780182|r 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 (910) Q Consensus 534 ~~E~vvV~lS~~GyIKr~~~~~yr~Q~RggkG~~~~~~ke~D~v~~~~~~~t~d~LLfFTs~Gkvy~l~v~~IP~~sr~s 613 (910) .+|+|+|++|++|||||+|+++|++|+|||+|+.++++|++|++.+++.|+|||+||||||+|++|++++|+||+++|++ T Consensus 1 ~eEdv~V~ls~~GyiKR~~~~~y~~q~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fTn~G~~~~~~v~eIp~~~~~~ 80 (307) T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 80 (307) T ss_dssp CCCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS T ss_pred CCCCEEEEEECCCEEEEEEHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCC T ss_conf 97679999968986887428997521468998334503789558999997189879999279759999920274212346 Q ss_pred CCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEECHHHHHHCCCCCEEEEEECCCCEEEEEEECCCC Q ss_conf 65541245453655620025663012566687179999479918984236862047772278661589857888961898 Q gi|254780182|r 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693 (910) Q Consensus 614 kG~pi~nll~l~~~E~I~ail~~~~~~~~~~~~~Lvl~Tk~G~VKkt~l~ef~~~r~~G~~aikLkegD~Li~v~~~~~~ 693 (910) +|.||.|++++.++|+|++++++.+++ ++.||+|+|++|+|||+++++|.+.+++|++||+|++||+|++|.+++++ T Consensus 81 ~G~~i~~ll~l~~~E~i~~~~~~~~~~---~~~~l~~~T~~G~iKr~~l~~f~~~r~~g~~ai~L~~~Delv~v~~~~~~ 157 (307) T 1zi0_A 81 RGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGE 157 (307) T ss_dssp CCEEGGGTSCCCTTCCEEEEEEESCCC---TTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTT T ss_pred CCCCHHEEECCCCCCEEEEEECCCCCC---CCCEEEEEECCCCEEEEECCCCCCCCCCCCEEEECCCCCEEEEEEEECCC T ss_conf 782855040688885489998123356---67449999678717873031025767357087755899999999994799 Q ss_pred CEEEEEECCCEEEEEEHHHCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 26999936985999758762354786655357675289986999897336665420000012223333333455544444 Q gi|254780182|r 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 (910) Q Consensus 694 ~~Iil~T~~G~~lrF~~~evr~~~GR~a~GVkgIkL~~~D~Vv~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 773 (910) ++++++|++|++|||+++++|++ ||+|+||+||+|+++|+||+|.++. T Consensus 158 ~~v~l~T~~G~~lrf~~~~v~~~-gr~a~GV~gi~L~~~d~vv~~~~~~------------------------------- 205 (307) T 1zi0_A 158 DEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRGIRLGEGDKVVSLIVPR------------------------------- 205 (307) T ss_dssp CEEEEEETTSEEEEEEGGGSCBC-CTTCCCEECCCCCTTCCEEEEECCC------------------------------- T ss_pred CEEEEEECCCEEEEEECCCCCCC-CCCCCCEEEEECCCCCEEEEEEECC------------------------------- T ss_conf 73999983874898603300037-8888776705708999999998613------------------------------- Q ss_pred CCCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCEEEEEHHHCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEE Q ss_conf 44433322222320011101256867999975993453017884866757741488760677776868999972899649 Q gi|254780182|r 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 (910) Q Consensus 774 ~~~~~~~~~~~~~~e~~~~~~~~~~~IL~vTe~G~GKRt~~~eyr~q~RGgkGv~~ik~~~~n~~g~lv~~~~V~~~DeI 853 (910) ++.++|++|++|||||+++++||.++|||+|++++++.+++ +.++++..|.++|++ T Consensus 206 ----------------------~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~~Gv~~~k~~~~~--~~~v~~~~v~~~d~i 261 (307) T 1zi0_A 206 ----------------------GDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQVDDCDQI 261 (307) T ss_dssp ----------------------SSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTT--CSEEEEEEECTTCEE T ss_pred ----------------------CCCEEEEEECCCEEEEECCCEEEEECCCCCCCEEEECCCCC--CCEEEEEECCCCCEE T ss_conf ----------------------87169987448605994021431204565571422025667--738999982899879 Q ss_pred EEEECCCEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEEEECC Q ss_conf 9994599899999010554451568738898089987999998356 Q gi|254780182|r 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 (910) Q Consensus 854 lliT~~G~iiR~~v~~I~~~gR~a~GV~i~~L~~~D~Vv~va~i~~ 899 (910) +++|++|+++|+++++||.+||+|+||++++|+++|+|++|++|+| T Consensus 262 ll~T~~G~~ir~~~~~i~~~gR~t~Gv~li~L~~~d~Vv~v~~v~e 307 (307) T 1zi0_A 262 MMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAE 307 (307) T ss_dssp EEEESSCCEEEEEGGGSCBCCSSCCCEECSCCCTTCCEEEEEECCC T ss_pred EEEECCCEEEEEEHHHCCCCCCCCCCEEEEECCCCCEEEEEEECCC T ss_conf 9991899799988546566788899879798799998999998589 No 11 >1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1 Probab=100.00 E-value=0 Score=595.69 Aligned_cols=312 Identities=25% Similarity=0.456 Sum_probs=297.1 Q ss_pred CCCCCCCCCEEEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEECCCCEEEEEECCCCEEEEECCCCCC Q ss_conf 01014567818999079705233100000233456521100014641010113323777399995489399982000432 Q gi|254780182|r 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 (910) Q Consensus 529 ~EdlI~~E~vvV~lS~~GyIKr~~~~~yr~Q~RggkG~~~~~~ke~D~v~~~~~~~t~d~LLfFTs~Gkvy~l~v~~IP~ 608 (910) .||||++|+|+|++|++|||||+|+++|++|+|||+|+.++++|++|++.+++.|+|||+||||||.|++|++++|+||+ T Consensus 1 ~EdlI~~e~v~v~lT~~GyiKR~~~~~~~~q~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~G~~y~i~v~~Ip~ 80 (312) T 1suu_A 1 MSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKD 80 (312) T ss_dssp -------CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC T ss_pred CCCCCCCCCEEEEEECCCEEEECCHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCEEEEEEEECCC T ss_conf 96556888889999689878874079975114788873345146896799999953886389987888499988453000 Q ss_pred CCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEECHHHHHHCCCCCEEEEEECCCCEEEEEE Q ss_conf 24445655412454536556200256630125666871799994799189842368620477722786615898578889 Q gi|254780182|r 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688 (910) Q Consensus 609 ~sr~skG~pi~nll~l~~~E~I~ail~~~~~~~~~~~~~Lvl~Tk~G~VKkt~l~ef~~~r~~G~~aikLkegD~Li~v~ 688 (910) ++|+++|+||.|++++.++|+|++++++.++. .+.||+|+|++|+|||+++++|.+.+++|+.|++|+++|++++|. T Consensus 81 ~~~~~~G~~i~~ll~l~~~e~ii~~~~~~~~~---~~~~lvl~Tk~G~iKr~~l~~~~~~~~~g~~a~kL~~~D~lv~v~ 157 (312) T 1suu_A 81 SSRASKGQNISELINLGDQEEILTIKNSKDLT---DDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAE 157 (312) T ss_dssp -------CBGGGTSCCCTTCCEEEEEEESCCC---TTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEE T ss_pred CCCCCCCCEEEEECCCCCCCEEEECCCCCCCC---CCCEEEEEECCCCEEEEEHHHHHHHCCCCEEEECCCCCCEEEEEE T ss_conf 57133780801333788763177603674314---301599995067155662588310140211663168997788899 Q ss_pred ECCCCCEEEEEECCCEEEEEEHHHCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 61898269999369859997587623547866553576752899869998973366654200000122233333334555 Q gi|254780182|r 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 (910) Q Consensus 689 ~~~~~~~Iil~T~~G~~lrF~~~evr~~~GR~a~GVkgIkL~~~D~Vv~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 768 (910) .++++++++++|++|+++||+++++|+| ||+|+||++|+|+++|+|+++.++. T Consensus 158 ~~~~~~~i~i~t~~G~~lrf~~~ei~~~-gr~a~GVk~i~L~~~d~v~~~~~~~-------------------------- 210 (312) T 1suu_A 158 IVFKDEKVICLSKKGSAFIFNSRDVRLT-NRGTQGVCGMKLKEGDLFVKVLSVK-------------------------- 210 (312) T ss_dssp EECTTCEEEEEETTSEEEEEEGGGSCBC-CTTBCCEECCCCCTTCCEEEEEECT-------------------------- T ss_pred EECCCCEEEEECCCCCEEEEEHHCCCCC-CCCCCCCCCEEECCCCEEEEEEEEC-------------------------- T ss_conf 9079834787547870698403306545-8776782024726998599999735-------------------------- Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCEEEEEHHHCCCCCCCCCCEEEEECCCCCCCCCEEEEEECC Q ss_conf 44444444333222223200111012568679999759934530178848667577414887606777768689999728 Q gi|254780182|r 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 (910) Q Consensus 769 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~IL~vTe~G~GKRt~~~eyr~q~RGgkGv~~ik~~~~n~~g~lv~~~~V~ 848 (910) .++++|++|++|||||+++++||.++|||+|+++|+++++ +.|.|++++.|+ T Consensus 211 ---------------------------~~~~ll~iT~~G~gKr~~~~e~~~~~Rg~~Gv~~~k~~~~-~~~~vv~~~~v~ 262 (312) T 1suu_A 211 ---------------------------ENPYLLIVSENGYGKRLNMSKISELKRGATGYTSYKKSDK-KAGSVVDAIAVS 262 (312) T ss_dssp ---------------------------TCSEEEEEETTSEEEEEEGGGSCBCCTTCCCEECSCTTCT-TTCSEEEEEEEC T ss_pred ---------------------------CCCEEEEEECCCCEEECCCHHHHCCCCCCCCEEEEEECCC-CCCCEEEEEEEC T ss_conf ---------------------------8862988836996698462342002557776598980478-887489999968 Q ss_pred CCCEEEEEECCCEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEEEECC Q ss_conf 996499994599899999010554451568738898089987999998356 Q gi|254780182|r 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 (910) Q Consensus 849 ~~DeIlliT~~G~iiR~~v~~I~~~gR~a~GV~i~~L~~~D~Vv~va~i~~ 899 (910) ++|+|+++|++|+++|+++++||.+||+|+||++|+| ++|++++++++.+ T Consensus 263 ~~d~i~l~T~~g~~ir~~~~~i~~~gR~~~Gv~~~~l-~~d~~v~v~~v~~ 312 (312) T 1suu_A 263 EDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFL-DNDSLVSVSKFIK 312 (312) T ss_dssp TTCEEEEEETTCEEEEEEGGGSCBCCTTCCCEECSCC-SSCCEEEEEECC- T ss_pred CCCEEEEEECCCEEEEEEHHHCCCCCCCCCCEEEEEC-CCCCEEEEEEECC T ss_conf 9998999958998999984354777877898488988-9997999999509 No 12 >1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1 Probab=100.00 E-value=0 Score=593.68 Aligned_cols=314 Identities=25% Similarity=0.422 Sum_probs=291.7 Q ss_pred CCCCCCEEEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCC Q ss_conf 14567818999079705233100000233456521100014641010113323777399995489399982000432244 Q gi|254780182|r 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 (910) Q Consensus 532 lI~~E~vvV~lS~~GyIKr~~~~~yr~Q~RggkG~~~~~~ke~D~v~~~~~~~t~d~LLfFTs~Gkvy~l~v~~IP~~sr 611 (910) ||++|+|+|++|+.|||||+|+++|++|+|+|.| +|++|++.+++.|+|||+||||||.||||+++||+||+++| T Consensus 1 LI~~E~vvV~lS~~GyIKr~~~~~~~~~~~~~~~-----~k~~D~v~~~~~~~t~d~ll~fT~~Grvy~i~v~eiP~~~~ 75 (323) T 1wp5_A 1 MVASEDVIVTVTKDGYVKRTSLRSYAASNGQDFA-----MKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRW 75 (323) T ss_dssp CCSCCEEEEEEETTCEEEEEEHHHHHHTTTCCCC-----CCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCT T ss_pred CCCCCCEEEEEECCCEEEEEEHHHHCCCCCCCCC-----CCCCCEEEEEEEECCCCEEEEEECCCEEEEEEEEECCCCCC T ss_conf 9888878999937985898067993114788786-----57884389999985898799993898799999052877533 Q ss_pred CCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEECHHHHHHCCC-CCEEEEEECCCCEEEEEEEC Q ss_conf 45655412454536556200256630125666871799994799189842368620477-72278661589857888961 Q gi|254780182|r 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR-SGKIAMKLDSRDEILSVETC 690 (910) Q Consensus 612 ~skG~pi~nll~l~~~E~I~ail~~~~~~~~~~~~~Lvl~Tk~G~VKkt~l~ef~~~r~-~G~~aikLkegD~Li~v~~~ 690 (910) +++|+||.|++++.++|+|++++++.++. .+.||+|+|++|++||+++++|.+.++ +|+.+|+|+++|+|++|.++ T Consensus 76 ~~~G~~i~nll~l~~~e~ii~~~~~~~~~---~~~~ll~~Tk~G~iKr~~l~e~~~~~~~~g~~~i~L~~~D~l~~v~~~ 152 (323) T 1wp5_A 76 KDLGQHIANIIPIDRDEEIIKAIPINDFE---LNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLT 152 (323) T ss_dssp TSCCEEGGGTSCCCTTCCEEEEEEESCTT---SSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEE T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCC---CCCEEEEEECCCCEEEEEHHHHCCCCCCCHHEEEECCCCCCCCCEEEC T ss_conf 35783121225666676356503445455---674699998888233865566101123330002433665555516843 Q ss_pred CCCCEEEEEECCCEEEEEEHHHCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 89826999936985999758762354786655357675289986999897336665420000012223333333455544 Q gi|254780182|r 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 (910) Q Consensus 691 ~~~~~Iil~T~~G~~lrF~~~evr~~~GR~a~GVkgIkL~~~D~Vv~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 770 (910) +++++|+++|++|++|||+++++|+| ||+|+||+||+|+++|+||++.++.+ T Consensus 153 ~~~~~i~l~t~~G~~lrf~~~~vr~~-gr~a~GVk~i~L~~~D~vv~~~~v~~--------------------------- 204 (323) T 1wp5_A 153 DGMNELFLVTHNGYALWFDESEVSIV-GVRAAGVKGMNLKEGDYIVSGQLITS--------------------------- 204 (323) T ss_dssp CSCSEEEEEETTSEEEEEEGGGSCBC-CSSCCCEECCCCCTTCCEEEEEEECC--------------------------- T ss_pred CCCEEEEEEECCCEEEEECCCCCCCC-CCCCCCCCCCCCCCCCEEEEEEEEEE--------------------------- T ss_conf 89848997404982897034542346-87656730202478988999999960--------------------------- Q ss_pred CCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCEEEEEHHHCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCC Q ss_conf 44444433322222320011101256867999975993453017884866757741488760677776868999972899 Q gi|254780182|r 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 (910) Q Consensus 771 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~IL~vTe~G~GKRt~~~eyr~q~RGgkGv~~ik~~~~n~~g~lv~~~~V~~~ 850 (910) ++++||++|++|||||+++++||.++|||+|++++++.+++ ...|+++..++++ T Consensus 205 -------------------------~~~~ll~iT~~G~gKr~~~~e~~~~~Rg~kGv~~~k~~k~~-~~~v~~~~v~~~~ 258 (323) T 1wp5_A 205 -------------------------KDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKAN-PHRISGFVVAQDS 258 (323) T ss_dssp -------------------------TTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSS-CCCEEEEEEECTT T ss_pred -------------------------CCCEEEEEECCCCEEECCHHHHHHCCCCCCCEEEECCCCCC-CCEEEEEEECCCC T ss_conf -------------------------57269998508814751145633115578870610133567-8248899976899 Q ss_pred CEEEEEECCCEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCC Q ss_conf 649999459989999901055445156873889808998799999835665556655 Q gi|254780182|r 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 (910) Q Consensus 851 DeIlliT~~G~iiR~~v~~I~~~gR~a~GV~i~~L~~~D~Vv~va~i~~~e~~de~e 907 (910) |+|+++|++|+++|+++++||.+||+|+||++++|+++|+|+++++++++|.+||.+ T Consensus 259 d~i~i~T~~g~~~r~~~~~i~~~gR~~~Gv~li~l~~~d~vvsv~~v~~~d~~e~~~ 315 (323) T 1wp5_A 259 DTIYLQTEKSFIETIKVGDIRFSDRYSNGSFVLDEEENGRVISVWKVEAEDKTEKLA 315 (323) T ss_dssp CEEEEEETTSCEEEEEGGGSCBCCSSSCCEESSCHHHHCCEEEEEEECSSCHHHHHH T ss_pred CEEEEEECCCEEEEEECCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCC T ss_conf 889999599889998700267678868887979889998999999868776641001 No 13 >1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA binding, DNA topology; 1.70A {Escherichia coli} Probab=100.00 E-value=2.3e-34 Score=324.68 Aligned_cols=189 Identities=19% Similarity=0.316 Sum_probs=161.3 Q ss_pred CCEEEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCC Q ss_conf 78189990797052331000002334565211000146410101133237773999954893999820004322444565 Q gi|254780182|r 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 (910) Q Consensus 536 E~vvV~lS~~GyIKr~~~~~yr~Q~RggkG~~~~~~ke~D~v~~~~~~~t~d~LLfFTs~Gkvy~l~v~~IP~~sr~skG 615 (910) |||+|+||++||||+. +..+...+++++|++|++.+++.|+|||+||||||.|++|++++|+||+++|++ T Consensus 2 E~vtV~lS~~G~Ir~~--------kg~~~~~~~~~~Ke~D~~~~~~~~~t~d~ll~FTn~G~~y~~~v~~ip~~~~~~-- 71 (256) T 1zvt_A 2 EPVTIVLSQMGWVRSA--------KGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQG-- 71 (256) T ss_dssp CEEEEEEETTSEEEEE--------ESSCCCSTTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCC-- T ss_pred CCEEEEECCCCEEEEE--------CCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCC-- T ss_conf 8979999289738800--------488888121745788811699998589889999489879999760041112456-- Q ss_pred CCCEEEEECCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEECHHHHHHCCCCCEEEEEECCCCEEEEEEECC-CCC Q ss_conf 5412454536556200256630125666871799994799189842368620477722786615898578889618-982 Q gi|254780182|r 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT-QEN 694 (910) Q Consensus 616 ~pi~nll~l~~~E~I~ail~~~~~~~~~~~~~Lvl~Tk~G~VKkt~l~ef~~~r~~G~~aikLkegD~Li~v~~~~-~~~ 694 (910) +|+.+++.++.++.++.+..+ .++.|++|+|++|++||+++++|.+.+++|+.+|+|+++|+++.+..+. +++ T Consensus 72 ~~~~~~~~~~~~~~~i~~~~~------~~~~~ll~~T~~G~ikr~~l~~~~~~~~~Gk~~~~l~~~d~~i~~~~v~~~~~ 145 (256) T 1zvt_A 72 EPLTGKLTLPPGATVDHMLME------SDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASD 145 (256) T ss_dssp EEGGGTCCCCTTCCEEEEECC------CTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTC T ss_pred CCCCCCCCCCCCCCEEEEEEE------CCCCEEEEEECCCEEEEEEHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCE T ss_conf 784443434445531345540------68842999968977999872550050235750022577883255599648854 Q ss_pred EEEEEECCCEEEEEEHHHCCCCCCCCCCCEEEEECCC------CCEEEEEEEEC Q ss_conf 6999936985999758762354786655357675289------98699989733 Q gi|254780182|r 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK------GDQVISMAIVL 742 (910) Q Consensus 695 ~Iil~T~~G~~lrF~~~evr~~~GR~a~GVkgIkL~~------~D~Vv~~~vi~ 742 (910) +|+++|++|++|||+.+++|.| +| ++||++|+|++ +|.|+++.++. T Consensus 146 ~i~l~t~~G~~l~f~~~ev~~~-~r-g~Gv~~~~l~~~~~~~~dd~v~~~~v~~ 197 (256) T 1zvt_A 146 MLLAITQAGRMLMFPVSDLPQL-SK-GKGNKIINIPSAEAARGEDGLAQLYVLP 197 (256) T ss_dssp EEEEEETTSEEEEEEGGGSCBC-SS-BSCEESSCCCHHHHHTTSSCEEEEEEEC T ss_pred EEEEECCCCCEEEEEHHHCCCC-CC-CCCCCCEEECCCCCCCCCCEEEEEEEEC T ss_conf 9999868992898566884424-58-8884247106422456774799988858 No 14 >3ku8_A GYRA14, DNA gyrase subunit A; alpha+beta, SH3 domain, topoisomerase, toxin-isomerase compl; HET: DNA; 1.93A {Escherichia coli} PDB: 1x75_A* 3kua_A* Probab=99.96 E-value=1.6e-29 Score=281.42 Aligned_cols=139 Identities=37% Similarity=0.602 Sum_probs=127.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCC Q ss_conf 99999999999999999999999888778999999874069999998618997898787763126978899999740221 Q gi|254780182|r 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 (910) Q Consensus 358 L~~fi~hR~evi~rRt~~~L~ka~~R~HILeGL~~Al~nIDeVI~iIR~S~d~~eAk~~L~~~~~~~~~~~~~~~~~~~~ 437 (910) -..|+.||.+||+|||+|+|+||++|+||||||++|++|||+||+|||+|+|+++|+.+||++.|..+............ T Consensus 10 ~s~~l~~R~~vItRRt~f~L~Ka~eR~HILeGL~iAl~nID~VI~IIR~S~d~~eAk~~L~~~~w~~~~~~~~~~~~~~~ 89 (156) T 3ku8_A 10 HSSGLVPRGSHMTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDD 89 (156) T ss_dssp ------------CCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHCSSHHHHHHHHHHSCEECTTHHHHGGGSSTT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCH T ss_conf 05477776668788679779999998999999999999499999999828982689999998530202168999982330 Q ss_pred CCCCC--------CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH Q ss_conf 11222--------344523699999999987899998887999999899999999988753049899 Q gi|254780182|r 438 SYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496 (910) Q Consensus 438 ~~~~~--------~~~~f~lSe~QA~AILdMrL~rLt~LE~~kl~~E~~eL~~~I~~l~~IL~s~~~ 496 (910) ...+. ..+.|+||+.||+|||+|||||||+||+++|.+|+++|.++|++|++||+|+++ T Consensus 90 ~~~~~~~~~~~~~~~~~y~LSe~QA~AILemrL~rLT~LE~ekl~~E~~eL~~~I~~l~~IL~~~~r 156 (156) T 3ku8_A 90 AARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADR 156 (156) T ss_dssp TTSCTTCCTTSEEETTEEECCHHHHHHHHTCBGGGGSHHHHHHHHHHHHHHHHHHHHHHHTCCSCC- T ss_pred HHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 0020002310034455453799999999996999998778999999999999999999998768888 No 15 >3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV} Probab=99.92 E-value=2.3e-22 Score=217.32 Aligned_cols=205 Identities=20% Similarity=0.306 Sum_probs=180.4 Q ss_pred CCCEEEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCC Q ss_conf 67818999079705233100000233456521100014641010113323777399995489399982000432244456 Q gi|254780182|r 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 (910) Q Consensus 535 ~E~vvV~lS~~GyIKr~~~~~yr~Q~RggkG~~~~~~ke~D~v~~~~~~~t~d~LLfFTs~Gkvy~l~v~~IP~~sr~sk 614 (910) +...+|.+|++|+|||++++.|...++ +|...++++++|.+..+..|...+.+++.|+.|++......++|..+|+++ T Consensus 112 ~~~~lv~~T~~G~iKr~~l~~f~~~~~--~g~~aikLk~~Delv~v~~~~~~~~i~l~T~~G~~lrf~~~~v~~~gr~a~ 189 (370) T 3l6v_A 112 DNRYVFMATRNGTVKKTPLSEFAFRLA--RGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTAT 189 (370) T ss_dssp TTCEEEEEETTSEEEEEEGGGGCSCCT--TCEESSCCCTTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCC T ss_pred CCCEEEEEECCCCEEECCHHHHHHCCC--CCCEEEECCCCCEEEEEEEECCCEEEEEEECCCEEEEEEECEECCCCCCCC T ss_conf 776699997898589665799411133--540789848998799789745981399993165189986011323687656 Q ss_pred CCCCEEEEECCCCCCEEEEEEECCCC-----------------------------CCCCCCEEEEEECCCCEEEECHHHH Q ss_conf 55412454536556200256630125-----------------------------6668717999947991898423686 Q gi|254780182|r 615 GKALINILSLNQGERITTIMPFPEDE-----------------------------SSWNNLYVVFATKHGNVRRNKLSDF 665 (910) Q Consensus 615 G~pi~nll~l~~~E~I~ail~~~~~~-----------------------------~~~~~~~Lvl~Tk~G~VKkt~l~ef 665 (910) |... +.|.++++|+++..+.... ...+..|++++|++|++||+++++| T Consensus 190 GVk~---i~L~~~d~vv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~vT~~G~~Kr~~~~e~ 266 (370) T 3l6v_A 190 GVRG---IRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEY 266 (370) T ss_dssp CEEC---CCCCTTCCEEEEEEECCC-----------------------------------CEEEEEETTSEEEEEEGGGS T ss_pred CEEE---EEECCCCEEEEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEECCHHHC T ss_conf 4366---7708999899989641555432110022001100134544310000013678507999716884276777765 Q ss_pred HHCC--CCCEEEEEEC-CCCEEEEEEECCCCCEEEEEECCCEEEEEEHHHCCCCCCCCCCCEEEEECCCCCEEEEEEEEC Q ss_conf 2047--7722786615-898578889618982699993698599975876235478665535767528998699989733 Q gi|254780182|r 666 IQIN--RSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742 (910) Q Consensus 666 ~~~r--~~G~~aikLk-egD~Li~v~~~~~~~~Iil~T~~G~~lrF~~~evr~~~GR~a~GVkgIkL~~~D~Vv~~~vi~ 742 (910) ...+ ..|.+++++. ++|+|+++..+.++++|+++|+.|+++||+.+++|. +||+|+||++|+|+++|+|+++..++ T Consensus 267 ~~~~Rg~~G~~~~k~~~~~d~lv~~~~v~~~d~ill~T~~G~~~r~~~~~I~~-~gR~t~Gv~~i~L~~~d~v~sv~~v~ 345 (370) T 3l6v_A 267 PRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRGSEISR-VGRNTQGVTLIRLSKGEKLQAVERLD 345 (370) T ss_dssp CCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEEGGGSCB-CCSSSCCEESSCCCTTCCEEEEEEEC T ss_pred CCCCCCCCCEEEEEECCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCCC-CCCCCCCEEEEECCCCCEEEEEEECC T ss_conf 73358866516668747873499999926997599995899899989345476-78878984768889999999999816 Q ss_pred CCC Q ss_conf 666 Q gi|254780182|r 743 HAD 745 (910) Q Consensus 743 ~~~ 745 (910) ... T Consensus 346 ~~~ 348 (370) T 3l6v_A 346 ASL 348 (370) T ss_dssp CCC T ss_pred CCC T ss_conf 656 No 16 >1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1 Probab=99.91 E-value=9.6e-22 Score=211.72 Aligned_cols=196 Identities=22% Similarity=0.312 Sum_probs=82.2 Q ss_pred CEEEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCC Q ss_conf 81899907970523310000023345652110001464101011332377739999548939998200043224445655 Q gi|254780182|r 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 (910) Q Consensus 537 ~vvV~lS~~GyIKr~~~~~yr~Q~RggkG~~~~~~ke~D~v~~~~~~~t~d~LLfFTs~Gkvy~l~v~~IP~~sr~skG~ 616 (910) ..++.+|+.|++||+++++|... |..+|...++++++|.+..++.|+..+.+++.|+.|++...+..++|..+|+++|. T Consensus 107 ~~ll~~Tk~G~iKr~~l~e~~~~-~~~~g~~~i~L~~~D~l~~v~~~~~~~~i~l~t~~G~~lrf~~~~vr~~gr~a~GV 185 (323) T 1wp5_A 107 GYFLFVTRNGMVKKTELKHYKAQ-RYSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGV 185 (323) T ss_dssp CEEEEEETTSEEEEEEGGGGCCS-CCSSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCE T ss_pred CEEEEEECCCCEEEEEHHHHCCC-CCCCHHEEEECCCCCCCCCEEECCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCC T ss_conf 46999988882338655661011-23330002433665555516843898489974049828970345423468765673 Q ss_pred CCEEEEECCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEECHHHHHHCCCC--CEEEEEEC--CCCEEEEEEECCC Q ss_conf 4124545365562002566301256668717999947991898423686204777--22786615--8985788896189 Q gi|254780182|r 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLD--SRDEILSVETCTQ 692 (910) Q Consensus 617 pi~nll~l~~~E~I~ail~~~~~~~~~~~~~Lvl~Tk~G~VKkt~l~ef~~~r~~--G~~aikLk--egD~Li~v~~~~~ 692 (910) .. +.|.++++|+++..+.+ ++.+|+++|++|++||+++++|...++. |.+++++. .++.++.+..+++ T Consensus 186 k~---i~L~~~D~vv~~~~v~~-----~~~~ll~iT~~G~gKr~~~~e~~~~~Rg~kGv~~~k~~k~~~~~v~~~~v~~~ 257 (323) T 1wp5_A 186 KG---MNLKEGDYIVSGQLITS-----KDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQD 257 (323) T ss_dssp EC---CCCCTTCCEEEEEEECC-----TTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECT T ss_pred CC---CCCCCCCEEEEEEEEEE-----CCCEEEEEECCCCEEECCHHHHHHCCCCCCCEEEECCCCCCCCEEEEEEECCC T ss_conf 02---02478988999999960-----57269998508814751145633115578870610133567824889997689 Q ss_pred CCEEEEEECCCEEEEEEHHHCCCCCCCCCCCEEEEECCCCCEEEEEEEEC Q ss_conf 82699993698599975876235478665535767528998699989733 Q gi|254780182|r 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742 (910) Q Consensus 693 ~~~Iil~T~~G~~lrF~~~evr~~~GR~a~GVkgIkL~~~D~Vv~~~vi~ 742 (910) +++|+++|+.|+++||+.+++|. +||+|+||+.|+|+++|+|+++..+. T Consensus 258 ~d~i~i~T~~g~~~r~~~~~i~~-~gR~~~Gv~li~l~~~d~vvsv~~v~ 306 (323) T 1wp5_A 258 SDTIYLQTEKSFIETIKVGDIRF-SDRYSNGSFVLDEEENGRVISVWKVE 306 (323) T ss_dssp TCEEEEEETTSCEEEEEGGGSCB-CCSSSCCEESSCHHHHCCEEEEEEEC T ss_pred CCEEEEEECCCEEEEEECCCCCC-CCCCCCCEEEEECCCCCEEEEEEECC T ss_conf 98899995998899987002676-78868887979889998999999868 No 17 >1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1 Probab=99.91 E-value=2.7e-22 Score=216.57 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=13.8 Q ss_pred EEEEECCCCEEEEEEECCCCCEEEEEECCCEEEEEEHHHC Q ss_conf 7866158985788896189826999936985999758762 Q gi|254780182|r 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 (910) Q Consensus 674 ~aikLkegD~Li~v~~~~~~~~Iil~T~~G~~lrF~~~ev 713 (910) .+++++++|.++.+..++..++++++|+.|++.+++..++ T Consensus 39 ~~~~~ke~D~~~~~~~~~t~d~ll~fT~~G~~y~i~v~~I 78 (312) T 1suu_A 39 SSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEI 78 (312) T ss_dssp ECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGS T ss_pred CCCCCCCCCEEEEEEEECCCCEEEEECCCCCEEEEEEEEC T ss_conf 3451468967999999538863899878884999884530 No 18 >1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli} Probab=99.91 E-value=4.2e-22 Score=214.93 Aligned_cols=189 Identities=22% Similarity=0.350 Sum_probs=65.3 Q ss_pred EEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCC Q ss_conf 89990797052331000002334565211000146410101133237773999954893999820004322444565541 Q gi|254780182|r 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 (910) Q Consensus 539 vV~lS~~GyIKr~~~~~yr~Q~RggkG~~~~~~ke~D~v~~~~~~~t~d~LLfFTs~Gkvy~l~v~~IP~~sr~skG~pi 618 (910) .+.+|++|+|||+++++|...++ .|...++++++|.+..+..++..+.++++|+.|++......++|..+|+++|.. T Consensus 112 l~~~T~~G~iKr~~l~~f~~~r~--~g~~ai~L~~~Delv~v~~~~~~~~v~l~T~~G~~lrf~~~~v~~~gr~a~GV~- 188 (307) T 1zi0_A 112 VFMATANGTVKKTVLTEFNRLRT--AGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVR- 188 (307) T ss_dssp EEEEETTSEEEEEEGGGGTTCCT--TCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE- T ss_pred EEEEECCCCEEEEECCCCCCCCC--CCCEEEECCCCCEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCEE- T ss_conf 99996787178730310257673--570877558999999999947997399998387489860330003788887767- Q ss_pred EEEEECCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEECHHHHHHCCCC--CEEEEEEC-CCCEEEEEEECCCCCE Q ss_conf 24545365562002566301256668717999947991898423686204777--22786615-8985788896189826 Q gi|254780182|r 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLD-SRDEILSVETCTQEND 695 (910) Q Consensus 619 ~nll~l~~~E~I~ail~~~~~~~~~~~~~Lvl~Tk~G~VKkt~l~ef~~~r~~--G~~aikLk-egD~Li~v~~~~~~~~ 695 (910) -+.|.++++|+++..++ ++.+|+++|.+|++||+++++|....+. |..++++. .++.++.+..+.+.++ T Consensus 189 --gi~L~~~d~vv~~~~~~------~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~~Gv~~~k~~~~~~~~v~~~~v~~~d~ 260 (307) T 1zi0_A 189 --GIRLGEGDKVVSLIVPR------GDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQ 260 (307) T ss_dssp --CCCCCTTCCEEEEECCC------SSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTCE T ss_pred --EEECCCCCEEEEEEECC------CCCEEEEEECCCEEEEECCCEEEEECCCCCCCEEEECCCCCCCEEEEEECCCCCE T ss_conf --05708999999998613------8716998744860599402143120456557142202566773899998289987 Q ss_pred EEEEECCCEEEEEEHHHCCCCCCCCCCCEEEEECCCCCEEEEEE Q ss_conf 99993698599975876235478665535767528998699989 Q gi|254780182|r 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739 (910) Q Consensus 696 Iil~T~~G~~lrF~~~evr~~~GR~a~GVkgIkL~~~D~Vv~~~ 739 (910) +++.|++|+++||+.+++|.+ ||.++||+.|+|.++|+|++++ T Consensus 261 ill~T~~G~~ir~~~~~i~~~-gR~t~Gv~li~L~~~d~Vv~v~ 303 (307) T 1zi0_A 261 IMMITDAGTLVRTRVSEISIV-GRNTQGVILIRTAEDENVVGLQ 303 (307) T ss_dssp EEEEESSCCEEEEEGGGSCBC-CSSCCCEECSCCCTTCCEEEEE T ss_pred EEEEECCCEEEEEEHHHCCCC-CCCCCCEEEEECCCCCEEEEEE T ss_conf 999918997999885465667-8889987979879999899999 No 19 >1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA binding, DNA topology; 1.70A {Escherichia coli} Probab=99.76 E-value=4.4e-17 Score=169.96 Aligned_cols=188 Identities=16% Similarity=0.295 Sum_probs=147.5 Q ss_pred EEEEECCCCEEEECHHHHHHCCCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCEEEEEEHHHCCCCCCCCCCCEEE- Q ss_conf 9999479918984236862047772278661589857888961898269999369859997587623547866553576- Q gi|254780182|r 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG- 726 (910) Q Consensus 648 Lvl~Tk~G~VKkt~l~ef~~~r~~G~~aikLkegD~Li~v~~~~~~~~Iil~T~~G~~lrF~~~evr~~~GR~a~GVkg- 726 (910) .|++|++|+||+..-.. . ....+++++||.+..+..|+..++++++|+.|++..++..+++.. .+.+.|+.. T Consensus 5 tV~lS~~G~Ir~~kg~~---~---~~~~~~~Ke~D~~~~~~~~~t~d~ll~FTn~G~~y~~~v~~ip~~-~~~~~~~~~~ 77 (256) T 1zvt_A 5 TIVLSQMGWVRSAKGHD---I---DAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA-RGQGEPLTGK 77 (256) T ss_dssp EEEEETTSEEEEEESSC---C---CSTTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCS-SSCCEEGGGT T ss_pred EEEECCCCEEEEECCCC---C---CCCCCCCCCCCEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCC-CCCCCCCCCC T ss_conf 99992897388004888---8---812174578881169999858988999948987999976004111-2456784443 Q ss_pred EECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEECC Q ss_conf 75289986999897336665420000012223333333455544444444333222223200111012568679999759 Q gi|254780182|r 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806 (910) Q Consensus 727 IkL~~~D~Vv~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~IL~vTe~ 806 (910) ..+..++.++++... .++.++|++|++ T Consensus 78 ~~~~~~~~~i~~~~~-----------------------------------------------------~~~~~ll~~T~~ 104 (256) T 1zvt_A 78 LTLPPGATVDHMLME-----------------------------------------------------SDDQKLLMASDA 104 (256) T ss_dssp CCCCTTCCEEEEECC-----------------------------------------------------CTTCEEEEEBTT T ss_pred CCCCCCCCEEEEEEE-----------------------------------------------------CCCCEEEEEECC T ss_conf 434445531345540-----------------------------------------------------688429999689 Q ss_pred CCEEEEEHHHCCCCCCCCCCEEEEECCCCCCCCCEEEEEEC-CCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCEEEEE Q ss_conf 93453017884866757741488760677776868999972-89964999945998999990105544515687388980 Q gi|254780182|r 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV-NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885 (910) Q Consensus 807 G~GKRt~~~eyr~q~RGgkGv~~ik~~~~n~~g~lv~~~~V-~~~DeIlliT~~G~iiR~~v~~I~~~gR~a~GV~i~~L 885 (910) ||+|||++++|..++|+|+.. |++.+. +.++.+..+ ..+++|+++|++|+++|++++++|+++| ++||++|++ T Consensus 105 G~ikr~~l~~~~~~~~~Gk~~--~~l~~~---d~~i~~~~v~~~~~~i~l~t~~G~~l~f~~~ev~~~~r-g~Gv~~~~l 178 (256) T 1zvt_A 105 GYGFVCTFNDLVARNRAGKAL--ITLPEN---AHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINI 178 (256) T ss_dssp SEEEEEEGGGGCCCSTTCEEC--BCCCTT---CCBCCCEECCCTTCEEEEEETTSEEEEEEGGGSCBCSS-BSCEESSCC T ss_pred CEEEEEEHHHHCCCCCCCCCC--CCCCCC---CCEEEEEEECCCCEEEEEECCCCCEEEEEHHHCCCCCC-CCCCCCEEE T ss_conf 779998725500502357500--225778---83255599648854999986899289856688442458-888424710 Q ss_pred CC------CCEEEEEEEECCCC Q ss_conf 89------98799999835665 Q gi|254780182|r 886 AK------DERVVSVERIRESE 901 (910) Q Consensus 886 ~~------~D~Vv~va~i~~~e 901 (910) .+ +|.|+.+..+++++ T Consensus 179 ~~~~~~~~dd~v~~~~v~~~~~ 200 (256) T 1zvt_A 179 PSAEAARGEDGLAQLYVLPPQS 200 (256) T ss_dssp CHHHHHTTSSCEEEEEEEC-CC T ss_pred CCCCCCCCCCEEEEEEEECCCC T ss_conf 6422456774799988858997 No 20 >1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA binding, DNA topology; 3.00A {Escherichia coli} Probab=99.74 E-value=5.3e-17 Score=169.24 Aligned_cols=234 Identities=15% Similarity=0.229 Sum_probs=160.0 Q ss_pred CCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEECHHHH Q ss_conf 77399995489399982000432244456554124545365562002566301256668717999947991898423686 Q gi|254780182|r 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 (910) Q Consensus 586 ~d~LLfFTs~Gkvy~l~v~~IP~~sr~skG~pi~nll~l~~~E~I~ail~~~~~~~~~~~~~Lvl~Tk~G~VKkt~l~ef 665 (910) .+-++.+|..|-+-..+.+..... | ++..++..+..++.. ....+|+|+|.+|.+......+. T Consensus 472 e~v~V~ls~~GyIkr~~~~~~~~~-----~------~~~k~~D~~~~~~~~------~t~d~ll~fT~~Grvy~l~v~~l 534 (716) T 1zvu_A 472 EPVTIVLSQMGWVRSAKGHDIDAP-----G------LNYKAGDSFKAAVKG------KSNQPVVFVDSTGRSYAIDPITL 534 (716) T ss_dssp CCCCEEEETTTEEEECCC--------------------------CCEEECC------CSSSCEEEEETTSEEEEECTTTS T ss_pred CCEEEEECCCCEEEECCCCCCCCC-----C------CCCCCCCCCEEEEEE------ECCCCEEEECCCCCEEEEEEEEC T ss_conf 650688636876862367765544-----5------423236653478997------15764068835882799741457 Q ss_pred HHCCCCCEE---EEEECCCCEEEEEEECCCCCEEEEEECCCEEEEEEHHHCCCCCCCCCCCEEEEECCCCCEEEEEEEEC Q ss_conf 204777227---86615898578889618982699993698599975876235478665535767528998699989733 Q gi|254780182|r 666 IQINRSGKI---AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742 (910) Q Consensus 666 ~~~r~~G~~---aikLkegD~Li~v~~~~~~~~Iil~T~~G~~lrF~~~evr~~~GR~a~GVkgIkL~~~D~Vv~~~vi~ 742 (910) ...+..|.. .++|+++.+++.+....++..++++|++|+.-+++.+++-. ++..|.+.|+|++||+++++..+. T Consensus 535 P~~~~kG~pi~~~l~l~~~E~I~~i~~~~~d~~lll~T~~G~~K~~~l~~~~~---~~k~Gk~aikLke~Deli~~~~~~ 611 (716) T 1zvu_A 535 PSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVA---RNRAGKALITLPENAHVMPPVVIE 611 (716) T ss_dssp CCCC---CBSTTTSCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCC---CSTTCEECBCCCTTCCBCCCEECC T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCEEEEEHHHHCC---CCCCCCEEEEECCCCEEEEEEEEC T ss_conf 67767886543410479998489987327886799997589589985136105---475773778768998899899965 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCEEEEEHHHCCCCCC Q ss_conf 66654200000122233333334555444444443332222232001110125686799997599345301788486675 Q gi|254780182|r 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822 (910) Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~IL~vTe~G~GKRt~~~eyr~q~R 822 (910) + ++++|+++|++|+.-|-+.++.|.++| T Consensus 612 ~----------------------------------------------------~~d~vl~vT~~Gk~lrF~~~ev~~~gr 639 (716) T 1zvu_A 612 D----------------------------------------------------ASDMLLAITQAGRMLMFPVSDLPQLSK 639 (716) T ss_dssp C----------------------------------------------------TTCEEEEEETTSEEEEEESTTSCBCSS T ss_pred C----------------------------------------------------CCCEEEEECCCCEEEEEEHHHCCCCCC T ss_conf 9----------------------------------------------------998899988898299978899886575 Q ss_pred CCCCEEEEECCCCC---CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC-CCCCCCCCCCEEEEECCCCEEE Q ss_conf 77414887606777---7686899997289964999945998999990105-5445156873889808998799 Q gi|254780182|r 823 SGKGIRATDVSKIN---EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI-RIASRATKGVVIFSTAKDERVV 892 (910) Q Consensus 823 GgkGv~~ik~~~~n---~~g~lv~~~~V~~~DeIlliT~~G~iiR~~v~~I-~~~gR~a~GV~i~~L~~~D~Vv 892 (910) |+||+.|++.+.+ ..+.|+++..+++++.++++|.+|..-+...+.- +.+.|+++||.++.+...|++. T Consensus 640 -g~GVkgikL~~~~~~~~~d~v~~~~v~~~~~~llv~t~~g~~k~~~~~~~~~~~~Rg~kG~~~~~~~k~D~~e 712 (716) T 1zvu_A 640 -GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVE 712 (716) T ss_dssp -BSCEESSCCCHHHHHTTSSCEEEEEEECSSCCEEEEETTEEEEECHHHHTTSBCCTTSCCEECTTCCSCCEEE T ss_pred -CCCCCEEECCCCCCCCCCCEEEEEEEECCCCEEEEEECCCEEEECHHHHHHHCCCCCCCCCCCCCCCCCCCEE T ss_conf -4771207306555556785599999977998699998898078587883020178788887997776678378 No 21 >3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A* Probab=93.45 E-value=0.47 Score=26.58 Aligned_cols=34 Identities=26% Similarity=0.288 Sum_probs=16.9 Q ss_pred CCCCCHHHHHHH---HHHHCCCHHCCCCCCCCCCCCCCCC Q ss_conf 688704789999---9971220111561314788708877 Q gi|254780182|r 85 YHPHGNAAIYDA---LARMAQDWSLRLLLIEGQGNFGSVD 121 (910) Q Consensus 85 yHPHGd~siy~a---~v~maq~~~~r~plidg~GnfGs~d 121 (910) |-.-||||.--| +...+.||--=+|| .|-+=++- T Consensus 26 ~l~EGdSA~~~~~~g~~~~~rd~~g~~pl---rGK~lN~~ 62 (757) T 3l4j_A 26 VLTEGDSALSLAVAGLAVVGRDYYGCYPL---RGKMLNVR 62 (757) T ss_dssp EEEEHHHHHHHHHHHHHHHCSTTEEEEEE---CSSCCCCT T ss_pred EEECCCCCCCCCCCCCCCCCCCCEEEEEC---CCCEEECC T ss_conf 99657585221127653216643788533---77330014 No 22 >1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} Probab=80.74 E-value=2.5 Score=20.04 Aligned_cols=24 Identities=13% Similarity=0.174 Sum_probs=16.0 Q ss_pred CCCCCCEEEEECCCCCEEEEEEEECC Q ss_conf 86655357675289986999897336 Q gi|254780182|r 718 GRNSVGVRGISLAKGDQVISMAIVLH 743 (910) Q Consensus 718 GR~a~GVkgIkL~~~D~Vv~~~vi~~ 743 (910) ||.++|. +|+-.-++|--+.+..+ T Consensus 319 GkdtrGl--~RvHQF~KVE~f~~~~p 342 (501) T 1wle_A 319 GKEPWGL--YRVHHFTKVEMFGVTGP 342 (501) T ss_dssp C--CCSS--SSCSEEEEEEEEEEECS T ss_pred CCCCCCC--EEEEECCCEEEEEEECC T ss_conf 5677672--25662142689998368 No 23 >3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* Probab=80.39 E-value=2.6 Score=19.95 Aligned_cols=47 Identities=9% Similarity=0.021 Sum_probs=27.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC Q ss_conf 878999988879999998999999999887530498999999999899999840 Q gi|254780182|r 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512 (910) Q Consensus 459 dMrL~rLt~LE~~kl~~E~~eL~~~I~~l~~IL~s~~~l~~iI~~EL~eik~ky 512 (910) ...-..+..++..+|.++.++|.++|+.+++-+. -+.+++.++.-.- T Consensus 95 ~~~~~~~~~~~~~~Lk~~~k~Lk~~i~~le~~l~-------ele~~l~~lll~I 141 (484) T 3lss_A 95 TLKGEQVEQLCVLQLKQLSKDLSDQVAGLAKEAQ-------QLEEERDKLMLNV 141 (484) T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHTTC T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHC T ss_conf 0000012244699999999999999999999999-------9999999999728 No 24 >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} Probab=79.27 E-value=2.3 Score=20.36 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=8.7 Q ss_pred HHHHHHHHHHHHHCCCC Q ss_conf 99999899999840568 Q gi|254780182|r 499 GIIKQELLSVKDELDTP 515 (910) Q Consensus 499 ~iI~~EL~eik~kygd~ 515 (910) .-|..+|+.+.+.++-+ T Consensus 339 ~~i~~~Lk~lA~~~~i~ 355 (444) T 2q6t_A 339 AAISRGLKALARELGIP 355 (444) T ss_dssp HHHHHHHHHHHHHHTSC T ss_pred HHHHHHHHHHHHHHCCE T ss_conf 99999999999973987 No 25 >3cnf_A VP1; cytoplasmic polyhedrosis virus, capsid protein, turret protein, polyhedrin-binding domain, guanylyltransferase domain; 3.88A {Bombyx mori cypovirus 1} Probab=77.82 E-value=2.1 Score=20.74 Aligned_cols=81 Identities=14% Similarity=0.182 Sum_probs=42.6 Q ss_pred EEEECCCCEEEECHHHHHHCCCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCEEEEEEHHHCCCCCCCCCCCEEEE- Q ss_conf 9994799189842368620477722786615898578889618982699993698599975876235478665535767- Q gi|254780182|r 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727 (910) Q Consensus 649 vl~Tk~G~VKkt~l~ef~~~r~~G~~aikLkegD~Li~v~~~~~~~~Iil~T~~G~~lrF~~~evr~~~GR~a~GVkgI- 727 (910) ++++.+|++-.++.+.+...++.-+-.|.+-|+- .... ....+. .++..-+-..||.+.+- +.| -+++| T Consensus 1177 i~~~~~~~~~~~~~~~~l~~~~~~i~~i~f~D~~--~~~~--~~~~d~-~~~~~~~r~i~p~~~i~--~~~---~~r~l~ 1246 (1333) T 3cnf_A 1177 VMTPSEGYTQHVDAESIMTAPKGKLFHLQFMDGL--LRPE--PSAFDP-PASGEDMRLIYPLQPIS--VAR---SMRAIV 1246 (1333) T ss_pred EEECCHHHHCCCCHHHHEECCCCEEEEEEEECCC--CCCC--CCCCCC-CCCCCEEEEEECCCHHH--HHH---HHHHHH T ss_conf 5404556426988788600267704789974055--3688--988763-22554036760461888--999---999985 Q ss_pred ECCCCCEEEEEE Q ss_conf 528998699989 Q gi|254780182|r 728 SLAKGDQVISMA 739 (910) Q Consensus 728 kL~~~D~Vv~~~ 739 (910) +....++-.++. T Consensus 1247 ~~~~~~~p~~a~ 1258 (1333) T 3cnf_A 1247 NHNEVDRPRGAV 1258 (1333) T ss_pred CCCCCCCCCCCC T ss_conf 323567998787 No 26 >1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1 Probab=73.94 E-value=3.7 Score=18.55 Aligned_cols=52 Identities=17% Similarity=0.300 Sum_probs=41.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH---HHHHHHHHHHHHC Q ss_conf 899998887999999899999999988753049899999---9999899999840 Q gi|254780182|r 461 RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG---IIKQELLSVKDEL 512 (910) Q Consensus 461 rL~rLt~LE~~kl~~E~~eL~~~I~~l~~IL~s~~~l~~---iI~~EL~eik~ky 512 (910) ||-+..-.-...|++|+++|..+|..|+.|-+.-+.|++ .+-.||...-+.| T Consensus 40 RLc~qVd~t~~eLeeEI~~L~~eI~~LE~iqs~aK~LRNKA~~Le~eL~~F~~~f 94 (96) T 1t3j_A 40 RLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENFSKQF 94 (96) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999998899999999999999999999999999999878988999999999987 No 27 >2vld_A NUCS, UPF0286 protein pyrab01260; endonuclease, hydrolase; 2.60A {Pyrococcus abyssi} Probab=67.70 E-value=4.8 Score=17.50 Aligned_cols=34 Identities=15% Similarity=0.104 Sum_probs=17.0 Q ss_pred ECCCCEEEEEEE--CCCCCEEEEEECCCEEEEEEHH Q ss_conf 158985788896--1898269999369859997587 Q gi|254780182|r 678 LDSRDEILSVET--CTQENDILLTTKLGQCVRFPIS 711 (910) Q Consensus 678 LkegD~Li~v~~--~~~~~~Iil~T~~G~~lrF~~~ 711 (910) |.+|=.++.-.. ..|.-|++...++|....+... T Consensus 141 i~~G~~~v~rE~~t~~G~iDll~~D~~g~~VvIElK 176 (251) T 2vld_A 141 IEEGFKPIYREKPIRHGIVDVMGVDKDGNIVVLELK 176 (251) T ss_dssp TCTTCEEEEEEEEETTEEEEEEEECTTSCEEEEEEC T ss_pred HCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEE T ss_conf 678978999988428896558999079999999997 No 28 >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A Probab=66.76 E-value=5 Score=17.35 Aligned_cols=20 Identities=35% Similarity=0.398 Sum_probs=12.1 Q ss_pred EEEECCCCCCCHHHHHHHHHH Q ss_conf 999246443528999999999 Q gi|254780182|r 266 IVVTEIPYQVNKAAMLEKIAE 286 (910) Q Consensus 266 ivItEiPY~vnk~~lie~Ia~ 286 (910) +||.- +.++.|+.+.-.++. T Consensus 206 ~vi~a-~pg~GKT~~~~~~a~ 225 (454) T 2r6a_A 206 IIVAA-RPSVGKTAFALNIAQ 225 (454) T ss_dssp EEEEC-CTTSCHHHHHHHHHH T ss_pred EEEEE-CCCCCCHHHHHHHHH T ss_conf 99995-677653299998997 No 29 >2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus VF5} Probab=66.50 E-value=5.1 Score=17.31 Aligned_cols=84 Identities=24% Similarity=0.273 Sum_probs=47.0 Q ss_pred HHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH Q ss_conf 999861899789878776312697889999974022111222344523699999999987-8999988879999998999 Q gi|254780182|r 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL-RLARLTGLGRDDIRNELNS 479 (910) Q Consensus 401 I~iIR~S~d~~eAk~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~lSe~QA~AILdM-rL~rLt~LE~~kl~~E~~e 479 (910) |+.||. +++.-+.+|-.| .+.+. ...+.|+++ .-+|-...+.++|+.|... T Consensus 4 ik~iRe--n~e~v~~~l~~R-------------------------~~~~~-~~id~il~Ld~~~r~l~~e~e~Lr~erN~ 55 (425) T 2dq3_A 4 INLIRE--KPDYVKERLATR-------------------------DKELV-SLVDKVLELDKRRREIIKRLEALRSERNK 55 (425) T ss_dssp HHHHHH--CHHHHHHHHTTT-------------------------CGGGH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHH--CHHHHHHHHHHC-------------------------CCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 788876--999999999870-------------------------99825-55999999999999999999999999999 Q ss_pred HHHHHHHHHHHHCCH---HHHHHHHHHHHHHHHHHC Q ss_conf 999999887530498---999999999899999840 Q gi|254780182|r 480 LGIEIKECLDILSSR---SRLLGIIKQELLSVKDEL 512 (910) Q Consensus 480 L~~~I~~l~~IL~s~---~~l~~iI~~EL~eik~ky 512 (910) +.++|..+++--.+. ....+.+++++.++.++. T Consensus 56 iSKeIg~~kk~~~~~~~l~~~~~~lk~~i~~le~~~ 91 (425) T 2dq3_A 56 LSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEEL 91 (425) T ss_dssp HHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999998679889999999999999999999999 No 30 >2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A Probab=54.82 E-value=3.8 Score=18.45 Aligned_cols=64 Identities=16% Similarity=0.214 Sum_probs=42.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC------CCCCEEECC Q ss_conf 7899998887999999899999999988753049899999999989999984056------883310013 Q gi|254780182|r 460 LRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT------PRRTRIVEG 523 (910) Q Consensus 460 MrL~rLt~LE~~kl~~E~~eL~~~I~~l~~IL~s~~~l~~iI~~EL~eik~kygd------~RRT~I~~~ 523 (910) =||..|.+....=|+.=-...+.+|..|+.|.....++..-..+|+.+|-.||.. .||..|+.. T Consensus 72 ~~l~~l~g~~sg~i~sLP~~Vr~Rv~aLk~lQ~e~~~le~kf~~Ev~~LE~KY~~~y~PLy~kR~~IV~G 141 (417) T 2ayu_A 72 DRLGSLVGQDSGYVGGLPKNVKEKLLSLKTLQSELFEVEKEFQVEMFELENKFLQKYKPIWEQRSRIISG 141 (417) T ss_dssp STTTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCC T ss_conf 9987662566446664999999999999999999999999999999999999999858399999999758 No 31 >3h3m_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.50A {Bordetella bronchiseptica} Probab=51.07 E-value=8.5 Score=15.28 Aligned_cols=41 Identities=17% Similarity=0.263 Sum_probs=34.6 Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEE Q ss_conf 99999988753049899999999989999984056883310 Q gi|254780182|r 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520 (910) Q Consensus 480 L~~~I~~l~~IL~s~~~l~~iI~~EL~eik~kygd~RRT~I 520 (910) ......-++.||+++.++..++...+.++...++..||..= T Consensus 74 ~~~k~~lL~~IL~nDaeIR~Ll~prldeL~~l~~~~~rq~~ 114 (126) T 3h3m_A 74 RGMKFDLLVRILENDAAVRDLALPQLARLSDLLGRMKRQQS 114 (126) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999986999999999999999999988888789 No 32 >3gc3_B Arrestin beta-1, clathrin heavy chain 1; protein-protein complex, alternative splicing, phosphoprotein, sensory transduction, acetylation, coated PIT; 2.20A {Bos taurus} PDB: 1utc_A 3gd1_I 1c9i_A 1c9l_A Probab=49.40 E-value=9 Score=15.08 Aligned_cols=66 Identities=20% Similarity=0.209 Sum_probs=42.1 Q ss_pred CCCCEEEEEECCCCEEEEEHHHCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC Q ss_conf 56867999975993453017884866757741488760677776868999972899649999459989999901055 Q gi|254780182|r 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871 (910) Q Consensus 795 ~~~~~IL~vTe~G~GKRt~~~eyr~q~RGgkGv~~ik~~~~n~~g~lv~~~~V~~~DeIlliT~~G~iiR~~v~~I~ 871 (910) .+...|+++|..||.-.-.+..= .=+-.-+++. +.+-.+..-+...-++.++.+|+++.+.+++-. T Consensus 268 ~kygviyviTK~G~i~lyDleTg-------t~i~~nrIs~----~~iF~~a~~~~~~Gi~~Vnr~GqVl~v~vn~~~ 333 (363) T 3gc3_B 268 EKHDVVFLITKYGYIHLYDLETG-------TCIYMNRISG----ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (363) T ss_dssp TTTTEEEEEETTSEEEEEETTTC-------CEEEEEECCS----SCEEEEEEEGGGTEEEEEETTSEEEEEEECTTT T ss_pred CCCCEEEEEECCCEEEEEECCCC-------EEEEEEECCC----CCEEEEECCCCCCCEEEECCCCEEEEEEECHHH T ss_conf 66688999946758999985766-------2788863478----854895156898728999379779999988132 No 33 >1b4u_A LIGA, LIGB, protocatechuate 4,5-dioxygenase; extradiol type dioxygenase, non-heme iron protein; HET: DHB; 2.20A {Sphingomonas paucimobilis} SCOP: a.88.1.1 PDB: 1bou_A Probab=47.60 E-value=9.5 Score=14.86 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=21.5 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 2369999999998789999888799 Q gi|254780182|r 447 MYLSEVQTRAILELRLARLTGLGRD 471 (910) Q Consensus 447 f~lSe~QA~AILdMrL~rLt~LE~~ 471 (910) |+||++|-+||++.-..+|-.|.-+ T Consensus 64 ~~LTeEqr~AV~~rD~~~Li~lGgN 88 (139) T 1b4u_A 64 WNLTPAAKAAVLARDYNAMIDEGGN 88 (139) T ss_dssp TTCCHHHHHHHHHTCHHHHHHTTCC T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCC T ss_conf 7999999999982019999993781 No 34 >2qzb_A Uncharacterized protein YFEY; structural genomics, unknown function, PSI-2, protein structure initiative; 2.10A {Escherichia coli K12} Probab=46.89 E-value=2.4 Score=20.27 Aligned_cols=54 Identities=19% Similarity=0.258 Sum_probs=25.0 Q ss_pred CCCCCCCCCHHEEEEEECCCCEE--EEEECCCCEEEEEC--CCCCCCCCCCCCCCCEEE Q ss_conf 10001464101011332377739--99954893999820--004322444565541245 Q gi|254780182|r 567 SGVVMRDEDFVTDLFIVSTHTSV--LFFSSLGFVYKEKV--WRLPIGSPQARGKALINI 621 (910) Q Consensus 567 ~~~~~ke~D~v~~~~~~~t~d~L--LfFTs~Gkvy~l~v--~~IP~~sr~skG~pi~nl 621 (910) +||.+.+++.+.. |.+...|.+ .++.++|.|-.+.+ .+|+......-|+|...+ T Consensus 47 sGM~t~nG~~v~~-~qa~~~d~v~lvi~G~~G~V~rI~V~d~~i~t~~G~~IGtpFsdl 104 (166) T 2qzb_A 47 SGMKTANGNVVRF-FEVMKGDNVAMVINGDQGTISRIDVLDSDIPADTGVKIGTPFSDL 104 (166) T ss_dssp EEEEEETTEEEEE-EEEEETTEEEEEEEC--CBCCEEEECCTTCCBTTSCCTTCBHHHH T ss_pred CCCCCCCCCEEEE-EEEECCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCHHHH T ss_conf 3665689987999-875359947899968997189899858876788767748567776 No 35 >1io1_A Phase 1 flagellin; beta-folium, structural protein; 2.00A {Salmonella typhimurium} SCOP: e.32.1.1 Probab=46.59 E-value=9.8 Score=14.74 Aligned_cols=61 Identities=23% Similarity=0.272 Sum_probs=38.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH- Q ss_conf 9999998740699999986189978987877631269788999997402211122234452369999999998789999- Q gi|254780182|r 387 LVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL- 465 (910) Q Consensus 387 LeGL~~Al~nIDeVI~iIR~S~d~~eAk~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~lSe~QA~AILdMrL~rL- 465 (910) +-||-.|..|+..-|.+++-++.. |-+ +.-||. |+|-| T Consensus 5 i~gl~qa~~N~~d~~s~~qtae~a------l~e----------------------------------~~~iL~-r~reLa 43 (398) T 1io1_A 5 IKGLTQASRNANDGISIAQTTEGA------LNE----------------------------------INNNLQ-RVRELA 43 (398) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH------HHH----------------------------------HHHHHH-HHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHH----------------------------------HHHHHH-HHHHHH T ss_conf 655999999999999999999999------999----------------------------------999999-999999 Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf --------88879999998999999999887 Q gi|254780182|r 466 --------TGLGRDDIRNELNSLGIEIKECL 488 (910) Q Consensus 466 --------t~LE~~kl~~E~~eL~~~I~~l~ 488 (910) +.-+|..|+.|+++|.++|..+- T Consensus 44 vqaan~t~t~~dr~ai~~E~~~L~~ei~~ia 74 (398) T 1io1_A 44 VQSANSTNSQSDLDSIQAEITQRLNEIDRVS 74 (398) T ss_dssp HHHTCTTCCHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9861468999999999999999999999999 No 36 >1ses_A Seryl-tRNA synthetase; ligase(synthetase); HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A Probab=45.98 E-value=10 Score=14.67 Aligned_cols=55 Identities=20% Similarity=0.381 Sum_probs=27.2 Q ss_pred HHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHH Q ss_conf 999861899789878776312697889999974022111222344523699999999987--899998887999999899 Q gi|254780182|r 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL--RLARLTGLGRDDIRNELN 478 (910) Q Consensus 401 I~iIR~S~d~~eAk~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~lSe~QA~AILdM--rL~rLt~LE~~kl~~E~~ 478 (910) |+.||+ |++.-+++|-.|. +.++ .+.|+++ +.|.| ..+.+.+++|.. T Consensus 4 ik~iR~--n~e~v~~~l~~R~-------------------------~~~d---ld~ll~Ld~~~r~l-~~~~e~l~~~rN 52 (421) T 1ses_A 4 LKRLRQ--EPEVFHRAIREKG-------------------------VALD---LEALLALDREVQEL-KKRLQEVQTERN 52 (421) T ss_dssp HHHHHH--CHHHHHHHHHHHT-------------------------CCCC---HHHHHHHHHHHHHH-HHHHHHHHHHHH T ss_pred HHHHHH--CHHHHHHHHHHCC-------------------------CCCC---HHHHHHHHHHHHHH-HHHHHHHHHHHH T ss_conf 788875--9999999998659-------------------------9706---89999999999999-999999999999 Q ss_pred HHHHHHHH Q ss_conf 99999998 Q gi|254780182|r 479 SLGIEIKE 486 (910) Q Consensus 479 eL~~~I~~ 486 (910) .+.++|.. T Consensus 53 ~lSK~I~k 60 (421) T 1ses_A 53 QVAKRVPK 60 (421) T ss_dssp HHHHHSSS T ss_pred HHHHHHHH T ss_conf 99999753 No 37 >1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A Probab=44.96 E-value=10 Score=14.55 Aligned_cols=60 Identities=13% Similarity=0.193 Sum_probs=28.4 Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCE-EEEEEECCCCCHHHHHHH Q ss_conf 599992464435289999999999871665014458730374655-799994798877899999 Q gi|254780182|r 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY-RVVIELKRGASADVILNQ 326 (910) Q Consensus 264 ~~ivItEiPY~vnk~~lie~Ia~lv~~~ki~gI~dirDeSdr~gi-RivielKr~~~~~~vln~ 326 (910) ..|.|..||+.++...|.+--. .-+.+.-+.=++|..+...- -..|+.....+++..++. T Consensus 89 ~~i~v~nl~~~~~~~~i~~~f~---~~G~i~~~~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~ 149 (167) T 1fxl_A 89 ANLYVSGLPKTMTQKELEQLFS---QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 149 (167) T ss_dssp CEEEEESCCTTCCHHHHHHHHG---GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH T ss_pred CEEEEECCCCCCCHHHHHHHHH---HCCCCCEEEEEECCCCCCCCCCEEEEECCHHHHHHHHHH T ss_conf 6799947778799999999998---759824278840488898578569997999999999999 No 38 >1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* Probab=43.30 E-value=11 Score=14.35 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=11.1 Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHH Q ss_conf 988753049899999999989999 Q gi|254780182|r 485 KECLDILSSRSRLLGIIKQELLSV 508 (910) Q Consensus 485 ~~l~~IL~s~~~l~~iI~~EL~ei 508 (910) +.+-.+||+++..+.-+...|..- T Consensus 178 ~KF~~lLNeKK~KIR~lq~~L~~a 201 (213) T 1ik9_A 178 KRFILVLNEKKTKIRSLHNKLLNA 201 (213) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999988999999999999987 No 39 >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} Probab=42.45 E-value=11 Score=14.25 Aligned_cols=20 Identities=10% Similarity=0.041 Sum_probs=12.2 Q ss_pred EEEECCCCCEEEEEEEECCC Q ss_conf 76752899869998973366 Q gi|254780182|r 725 RGISLAKGDQVISMAIVLHA 744 (910) Q Consensus 725 kgIkL~~~D~Vv~~~vi~~~ 744 (910) |.+=-+++.+|+|+.++... T Consensus 372 kli~~~~~~~ilG~~~~g~~ 391 (452) T 3oc4_A 372 KLIYDKVTQRVLGAQLCSKN 391 (452) T ss_dssp EEEEETTTCBEEEEEEEESS T ss_pred EEEEECCCCEEEEEEEECCC T ss_conf 99999998989969999888 No 40 >3nkz_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MC midwest center for structural genomics; HET: MSE PG4; 2.11A {Yersinia enterocolitica subsp} Probab=41.82 E-value=11 Score=14.18 Aligned_cols=57 Identities=11% Similarity=0.148 Sum_probs=44.1 Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEE-ECCCCCCCCCCCCCCCC Q ss_conf 9999988753049899999999989999984056883310-01343453010145678 Q gi|254780182|r 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVRED 537 (910) Q Consensus 481 ~~~I~~l~~IL~s~~~l~~iI~~EL~eik~kygd~RRT~I-~~~~~~i~~EdlI~~E~ 537 (910) .....-++.||+++..+..++...+.++.+..+.-||..- ...-+.+....+.|.|+ T Consensus 65 ~~~~~lL~~IL~ndaeIr~Ll~~rmd~L~~li~q~~~q~~l~~aYgqf~~~~l~~~~~ 122 (123) T 3nkz_A 65 DLLREKLRAILDNEIEIKRLLQLRLDRLSDLVGQSTKQQAVNNTYGQFPDHALLLGET 122 (123) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------------- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC T ss_conf 9999999999967999999999999999999998887789998885789985789999 No 41 >1b79_A DNAB helicase; hexamer, DNA replication, hydrolase; 2.30A {Escherichia coli} SCOP: a.81.1.1 PDB: 1jwe_A Probab=40.92 E-value=12 Score=14.07 Aligned_cols=36 Identities=17% Similarity=0.284 Sum_probs=20.1 Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCC Q ss_conf 7898547899999988761877688888863458668 Q gi|254780182|r 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDF 225 (910) Q Consensus 189 nippHNl~Ev~~a~~~~i~~p~~~~~eL~~~i~GPDF 225 (910) +.||||+--=-.-+-+++-+|++ .+++..+++.-|| T Consensus 15 r~pP~~~eAE~~vLG~lL~~p~~-~~~v~~~l~~edF 50 (119) T 1b79_A 15 KVPPHSIEAEQSVLGGLMLDNER-WDDVAERVVADDF 50 (119) T ss_dssp --CCCHHHHHHHHHHHHHHCGGG-HHHHHTTCCGGGS T ss_pred CCCCCCHHHHHHHHHHHHCCCCH-HHHHHHCCCHHHC T ss_conf 79999889999999999918518-9999960499871 No 42 >3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic gene regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Probab=40.14 E-value=8.2 Score=15.45 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=31.0 Q ss_pred HHHHHCCCCCC---CHHHHHHHHHHHCCCHHCCCCCCCCCCCCC Q ss_conf 55664366887---047899999971220111561314788708 Q gi|254780182|r 78 SGEVMGKYHPH---GNAAIYDALARMAQDWSLRLLLIEGQGNFG 118 (910) Q Consensus 78 vg~v~gkyHPH---Gd~siy~a~v~maq~~~~r~plidg~GnfG 118 (910) |+|+|-+ |- .|++|+||+-.|.+.---..|.+|..|.|. T Consensus 19 v~dims~--pv~V~~~~tv~ea~~~m~~~~~~~l~Vvd~~~~~~ 60 (159) T 3fv6_A 19 VKDFQSI--PVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLV 60 (159) T ss_dssp GGGSCBC--CCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEE T ss_pred HHHHCCC--CEEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEE T ss_conf 9995789--95999929799999999974996899996997399 No 43 >2ob9_A Tail assembly chaperone; bacteriophage HK97, morphogenesis; 2.30A {Enterobacteria phage HK97} Probab=37.46 E-value=13 Score=13.66 Aligned_cols=29 Identities=21% Similarity=0.230 Sum_probs=16.9 Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCCEEEEH Q ss_conf 08973678999999987899999811340 Q gi|254780182|r 47 DGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 (910) Q Consensus 47 DGlKpv~Rrily~m~~~~~~~~~~~~K~a 75 (910) .-.-|||-|+|-..-+|+....-.-+||| T Consensus 99 ~~YGPVH~Rll~qALeL~~~~~daek~s~ 127 (130) T 2ob9_A 99 EIYGPVHSRLLKQALDLINNADEAREKSQ 127 (130) T ss_dssp TTCCHHHHHHHHHHHTTTC---------- T ss_pred HHHCHHHHHHHHHHHHHCCCHHHHHCCCC T ss_conf 98640999999999981487888723468 No 44 >3glc_A Aldolase LSRF; TIM barrel, cytoplasm, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli k-12} PDB: 3gnd_A* 3gkf_O Probab=37.32 E-value=13 Score=13.64 Aligned_cols=22 Identities=9% Similarity=0.244 Sum_probs=12.2 Q ss_pred HHHHHHHHHHCCCHHHHHHHHH Q ss_conf 6999999861899789878776 Q gi|254780182|r 397 LDEVVRIIRFSPNPETARRELM 418 (910) Q Consensus 397 IDeVI~iIR~S~d~~eAk~~L~ 418 (910) +..+-+||-...+++||-+-+. T Consensus 270 ~~ai~~iVH~~~s~eeA~~l~~ 291 (295) T 3glc_A 270 MKAVQAVVHHNETADRAYELYL 291 (295) T ss_dssp HHHHHHHHHHCCCHHHHHHHHH T ss_pred HHHHHHHHHCCCCHHHHHHHHH T ss_conf 9999999828999999999987 No 45 >3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila str} PDB: 3fxe_A Probab=36.83 E-value=13 Score=13.74 Aligned_cols=45 Identities=27% Similarity=0.369 Sum_probs=29.8 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC Q ss_conf 3699999999987899998887999999899999999988753049899999999989999984056 Q gi|254780182|r 448 YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514 (910) Q Consensus 448 ~lSe~QA~AILdMrL~rLt~LE~~kl~~E~~eL~~~I~~l~~IL~s~~~l~~iI~~EL~eik~kygd 514 (910) .||+.|++|||.- |-+-|+ .===.++.-+.+|-+-|.+|++.|.. T Consensus 4 ~l~~eq~~aILka-------------------LdeaIe---~GPWe~SnFLRvIGKnL~eIRd~F~~ 48 (57) T 3fxd_A 4 QLSDEQKETILKA-------------------LNDAIE---KGPWDKSNFLRVIGKKLIAIRDRFLK 48 (57) T ss_dssp CCCHHHHHHHHHH-------------------HHHHHH---HSCTTSCHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH-------------------HHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 4329999999999-------------------999998---29834888999998889999999999 No 46 >2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A Probab=36.68 E-value=13 Score=13.56 Aligned_cols=85 Identities=21% Similarity=0.241 Sum_probs=44.7 Q ss_pred HHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH Q ss_conf 99986189978987877631269788999997402211122234452369999999998789-99988879999998999 Q gi|254780182|r 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRL-ARLTGLGRDDIRNELNS 479 (910) Q Consensus 401 I~iIR~S~d~~eAk~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~lSe~QA~AILdMrL-~rLt~LE~~kl~~E~~e 479 (910) |+.||. |++..+.+|..|. +..+....+.|+++-- +|-...+.+.+++|... T Consensus 4 ik~iRe--npe~v~~~l~~R~-------------------------~~~d~~~vd~ll~ld~~~r~l~~e~e~Lr~~rN~ 56 (455) T 2dq0_A 4 IKLIRE--NPELVKNDLIKRG-------------------------ELEKVKWVDEILKLDTEWRTKLKEINRLRHERNK 56 (455) T ss_dssp HHHHHH--CHHHHHHHHHHHT-------------------------CGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHH--CHHHHHHHHHHCC-------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 788776--9999999998649-------------------------9631557999999999999999999999999999 Q ss_pred HHHHHHHHHHHHCCHHH---HHHHHHHHHHHHHHHC Q ss_conf 99999988753049899---9999999899999840 Q gi|254780182|r 480 LGIEIKECLDILSSRSR---LLGIIKQELLSVKDEL 512 (910) Q Consensus 480 L~~~I~~l~~IL~s~~~---l~~iI~~EL~eik~ky 512 (910) +.++|..+++--.+.+. ..+-|++++.++.+++ T Consensus 57 lSK~Ig~~kk~~~~~~~l~~~~~~lk~~ik~le~~l 92 (455) T 2dq0_A 57 IAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEV 92 (455) T ss_dssp HHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999998679978999999999999999999999 No 47 >1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A Probab=36.31 E-value=3.3 Score=18.96 Aligned_cols=30 Identities=37% Similarity=0.674 Sum_probs=21.3 Q ss_pred HHCCCCCCCHHHHHHHHHHHCCCHH-CCCCCC--CCCCCCCCC Q ss_conf 6436688704789999997122011-156131--478870887 Q gi|254780182|r 81 VMGKYHPHGNAAIYDALARMAQDWS-LRLLLI--EGQGNFGSV 120 (910) Q Consensus 81 v~gkyHPHGd~siy~a~v~maq~~~-~r~pli--dg~GnfGs~ 120 (910) +=|-||| |.++|-|. -||-|+ -|+|.||++ T Consensus 3 ~~~~~~p----------~~~g~~~~~~rY~l~~~LG~G~fg~V 35 (373) T 1q8y_A 3 RPGGYHP----------AFKGEPYKDARYILVRKLGWGHFSTV 35 (373) T ss_dssp ----CCC----------CCTTCEETTTTEEEEEEEEECSSEEE T ss_pred CCCCCCC----------CCCCCCCCCCCEEEEEEEEECCCEEE T ss_conf 9898476----------47898812686799889860658499 No 48 >1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34 Probab=36.14 E-value=13 Score=13.50 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=21.2 Q ss_pred EHHHHCCCCCCHHHHHHHHHHHHHC--C--CCCHHHHHHH Q ss_conf 0133178985478999999887618--7--7688888863 Q gi|254780182|r 184 VGMATNIPTHNLGEVVDGCVAVIDN--P--DIDLDALMEI 219 (910) Q Consensus 184 vGmaTnippHNl~Ev~~a~~~~i~~--p--~~~~~eL~~~ 219 (910) |||-||.++-.|.-+..-+...+-. | ++|.++|-.| T Consensus 14 ~GMLtN~~slpleRIh~mLkmfv~~~~~~~~~t~~eL~~F 53 (74) T 1ldd_A 14 EGMLTNLGAMKLHKIHSFLKITVPKDWGYNRITLQQLEGY 53 (74) T ss_dssp HHHHHHHCSEEHHHHHHHHHHHSCGGGCCTTCCHHHHHHH T ss_pred HHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHH T ss_conf 9999767878799999999987579999887699999999 No 49 >2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Probab=36.10 E-value=9.8 Score=14.73 Aligned_cols=29 Identities=10% Similarity=0.062 Sum_probs=14.5 Q ss_pred CHHHHHHHHHHHCCCHHCCCCCCCCCCCC Q ss_conf 04789999997122011156131478870 Q gi|254780182|r 89 GNAAIYDALARMAQDWSLRLLLIEGQGNF 117 (910) Q Consensus 89 Gd~siy~a~v~maq~~~~r~plidg~Gnf 117 (910) .++++++|+-.|.+.-....|.+|++|.| T Consensus 20 ~~~tl~~a~~~m~~~~~~~lpVvd~~~~~ 48 (160) T 2o16_A 20 RTHTLNDAKHLMEALDIRHVPIVDANKKL 48 (160) T ss_dssp TTSBHHHHHHHHHHHTCSEEEEECTTCBE T ss_pred CCCCHHHHHHHHHHCCCCEEEEEECCCCE T ss_conf 94969999999998599889999289959 No 50 >3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens} Probab=35.70 E-value=14 Score=13.44 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=14.2 Q ss_pred EEECCCCCEEEEEECCCEEEEEECC Q ss_conf 9972899649999459989999901 Q gi|254780182|r 844 VFPVNDNDQIILVSDKGTLIRVPVN 868 (910) Q Consensus 844 ~~~V~~~DeIlliT~~G~iiR~~v~ 868 (910) +..+...+-++|-|+.|+++++-+. T Consensus 394 v~~~~~~tV~flGT~~G~l~Kv~~~ 418 (528) T 3ol2_B 394 VTMEDGHTIAFLGDSQGQLHRVYLG 418 (528) T ss_dssp EEEETTEEEEEEEETTSEEEEEECS T ss_pred EECCCCEEEEEEECCCCEEEEEEEC T ss_conf 9613887999996688359999988 No 51 >1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C Probab=34.31 E-value=14 Score=13.27 Aligned_cols=48 Identities=15% Similarity=0.132 Sum_probs=36.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 799999989999999998875304989999999998999998405688 Q gi|254780182|r 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516 (910) Q Consensus 469 E~~kl~~E~~eL~~~I~~l~~IL~s~~~l~~iI~~EL~eik~kygd~R 516 (910) +..+++++..++.++|.+|+..+........-+++++.++..+.-.+- T Consensus 92 ei~~lk~~I~~~e~qI~eLq~~l~~~~~~I~~LkqkI~qLeqq~qe~~ 139 (409) T 1m1j_C 92 EIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESHCQEPC 139 (409) T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 999999999999989999999998777655679999999998750112 No 52 >3bzq_A Nitrogen regulatory protein P-II; GLNB, GLNK, signal transdu protein, nucleotide-binding, transcription; 1.40A {Mycobacterium tuberculosis H37RV} PDB: 3lf0_A* Probab=33.87 E-value=14 Score=13.22 Aligned_cols=78 Identities=19% Similarity=0.300 Sum_probs=45.4 Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCH-HHHHHHHHHCCCEEEEEEEEEEEECCCCCEEEEE Q ss_conf 898547899999988761877688888863458668874434475-8899998701203899998865433678459999 Q gi|254780182|r 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268 (910) Q Consensus 190 ippHNl~Ev~~a~~~~i~~p~~~~~eL~~~i~GPDFPTGG~I~~~-~~i~~~y~tGrG~i~iR~k~~ie~~~~~k~~ivI 268 (910) |.||.|.+|.+|+... .-|-+|+.+ ++| .|. .+..+.|..+.-....-.|..+ .|++ T Consensus 10 Irp~kl~~v~~AL~~~-G~~g~Tv~~----V~G---------~G~~~~~~~~~~~~~~~~~~~~k~~i--------eivv 67 (114) T 3bzq_A 10 VKPFTLDDVKTSLEDA-GVLGMTVSE----IQG---------YGRQKGHTEVYRGAEYSVDFVPKVRI--------EVVV 67 (114) T ss_dssp ECGGGHHHHHHHHHHT-TCCCCEEEE----EEE---------ECC---------------CEEEEEEE--------EEEE T ss_pred ECHHHHHHHHHHHHHC-CCCCEEEEE----EEC---------CCCCCCCCEEECCCEEEECCCCEEEE--------EEEE T ss_conf 8989999999999978-998599998----305---------34667860244241567311316999--------9998 Q ss_pred ECCCCCCCHHHHHHHHHHHHHCCCC Q ss_conf 2464435289999999999871665 Q gi|254780182|r 269 TEIPYQVNKAAMLEKIAELVREKRI 293 (910) Q Consensus 269 tEiPY~vnk~~lie~Ia~lv~~~ki 293 (910) .+-. -..+++.|.+..+.+.. T Consensus 68 ~d~~----ve~vv~~I~~~a~TG~~ 88 (114) T 3bzq_A 68 DDSI----VDKVVDSIVRAARTGKI 88 (114) T ss_dssp ETTT----HHHHHHHHHHHHCCSST T ss_pred CHHH----HHHHHHHHHHHHCCCCC T ss_conf 8799----99999999998554999 No 53 >3a7m_A Flagellar protein FLIT; UP-DOWN helix bundle, bacterial flagellum biogenesis, chaper cytoplasm, repressor, transcription; 3.20A {Salmonella typhimurium} Probab=33.84 E-value=15 Score=13.21 Aligned_cols=57 Identities=11% Similarity=0.111 Sum_probs=40.5 Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEE-CCCCCCCCCCCCCCCC Q ss_conf 99999887530498999999999899999840568833100-1343453010145678 Q gi|254780182|r 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVRED 537 (910) Q Consensus 481 ~~~I~~l~~IL~s~~~l~~iI~~EL~eik~kygd~RRT~I~-~~~~~i~~EdlI~~E~ 537 (910) .....-++.||.++.+++.++...+.++....+.-+|..-. ..-+.+.-.-+.|++| T Consensus 62 ~~~~~lL~~IL~nd~eIr~Ll~~rmdeL~~li~~~~rq~~l~~aYg~~~g~~l~p~~p 119 (122) T 3a7m_A 62 DMVAGYIKQTLDNEQLLKGLLQQRLDELSSLIGQSTRQKSLNNAYGRLSGMLLVPDAP 119 (122) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCCCCC--- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC T ss_conf 9999999999976999999999999999999998786689999997478871489998 No 54 >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis/exocytosis complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A Probab=33.77 E-value=15 Score=13.20 Aligned_cols=20 Identities=15% Similarity=0.225 Sum_probs=12.6 Q ss_pred CCCCEEEEEECCCEEEEEEC Q ss_conf 89964999945998999990 Q gi|254780182|r 848 NDNDQIILVSDKGTLIRVPV 867 (910) Q Consensus 848 ~~~DeIlliT~~G~iiR~~v 867 (910) .-++|++-+|++..+.|..+ T Consensus 925 ~cD~eLI~vtn~N~l~K~qA 944 (1630) T 1xi4_A 925 QCDLELINVCNENSLFKSLS 944 (1630) T ss_pred CCHHHHHHHHCCCHHHHHHH T ss_conf 88599998772344589999 No 55 >3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, alternative splicing, amyloid, amyloidosis, blood coagulation, coiled coil; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C Probab=33.36 E-value=15 Score=13.15 Aligned_cols=50 Identities=10% Similarity=0.125 Sum_probs=39.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 87999999899999999988753049899999999989999984056883 Q gi|254780182|r 468 LGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517 (910) Q Consensus 468 LE~~kl~~E~~eL~~~I~~l~~IL~s~~~l~~iI~~EL~eik~kygd~RR 517 (910) -+..+++....++.++|..|+..+...+....-+.+++.++.++...+.. T Consensus 91 eei~~le~~i~~~e~qI~qLq~~l~~l~~~i~~lk~~I~qLeek~~~~~~ 140 (411) T 3ghg_C 91 EEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCK 140 (411) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCCE T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 99999999999888777777778899998989999999999976435555 No 56 >1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A* Probab=31.74 E-value=4.5 Score=17.72 Aligned_cols=18 Identities=11% Similarity=0.051 Sum_probs=8.1 Q ss_pred CCCCHHHHHHHCCCCCCC Q ss_conf 776888888634586688 Q gi|254780182|r 209 PDIDLDALMEIIRGPDFP 226 (910) Q Consensus 209 p~~~~~eL~~~i~GPDFP 226 (910) ++-..+++-.|.+|==|| T Consensus 11 ~~~~~~~~~~~~~~~~~~ 28 (397) T 1wak_A 11 DDDEQEDPNDYCKGGYHL 28 (397) T ss_dssp -----------CC--CCS T ss_pred CCCCCCCCCCCCCCCCEE T ss_conf 855566734568799612 No 57 >1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* 1re4_C* 2ffd_C* ... Probab=31.34 E-value=16 Score=12.90 Aligned_cols=34 Identities=12% Similarity=0.185 Sum_probs=14.1 Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC Q ss_conf 9999999887530498999999999899999840 Q gi|254780182|r 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512 (910) Q Consensus 479 eL~~~I~~l~~IL~s~~~l~~iI~~EL~eik~ky 512 (910) +...+|..|+..|...+....-+.+++.++..+- T Consensus 15 ~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~~ 48 (319) T 1fzc_C 15 THDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQC 48 (319) T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 7699999999999999999999999999999987 No 58 >1muk_A Minor core protein lambda 3; single subunit polymerase fold, fingers, PALM, thumb, right hand configuration, viral protein; 2.50A {Reovirus SP} SCOP: e.8.1.4 PDB: 1mwh_A* 1n1h_A* 1n35_A* 1n38_A* 1uon_A* 2cse_1 Probab=31.26 E-value=13 Score=13.79 Aligned_cols=129 Identities=9% Similarity=0.138 Sum_probs=57.0 Q ss_pred HHHHHHHHCCCEEEEEEEEEEEECCCCCEE---EEEECCC---C---CCCHHH------------HHHHHHHHHHCCC-- Q ss_conf 899998701203899998865433678459---9992464---4---352899------------9999999987166-- Q gi|254780182|r 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQ---IVVTEIP---Y---QVNKAA------------MLEKIAELVREKR-- 292 (910) Q Consensus 236 ~i~~~y~tGrG~i~iR~k~~ie~~~~~k~~---ivItEiP---Y---~vnk~~------------lie~Ia~lv~~~k-- 292 (910) .+...|++|-|.+.=+=.|.- .+.+++ +=++.|- + -++-.+ ++..|....+.-. T Consensus 281 sLHsMYR~~~gG~~P~ieW~E---PRskY~F~~~Gv~~l~~~~~~~~p~~d~~~~~~~~~ygL~dv~~~i~~~~~~~~~H 357 (1267) T 1muk_A 281 TLHSMYESLEGGYCPNLEWLE---PRSDYKFMYMGVMPLSAKYARSAPSNDKKARELGEKYGLSSVVGELRKRTKTYVKH 357 (1267) T ss_dssp TGGGCCSSCCEEEEEEEEECS---SGGGCBEEEEEEEECCGGGSCCSCCCHHHHHHHHHHTTCHHHHHHHHHHHHTCCEE T ss_pred HHHHHHHHCCCCCCCCEEECC---CCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHCCCCCC T ss_conf 299998724687566113237---66554489951476354545689876378999998728699999999986047666 Q ss_pred -CCHHHHHHHH-CCCCCEEEEEEECCCCCHHHHHHHHHHHCCHHC------CC--CC-EEEEEECCCCCCCCHHHHHHHH Q ss_conf -5014458730-374655799994798877899999997610110------00--00-0245541663000299999999 Q gi|254780182|r 293 -IVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQS------LF--SV-NMVALNGYKPERFTLIGILKAF 361 (910) Q Consensus 293 -i~gI~dirDe-Sdr~giRivielKr~~~~~~vln~Lyk~T~Lq~------sf--~~-N~~aL~~g~P~~l~Lk~iL~~f 361 (910) -+-+.=|||- +-..||-|| | .-.+.||.. |..||.-. -. .+ |.-.|.+..| ...+-+-+.| T Consensus 358 ~~dSvr~VRDvMa~TSg~flV----R-~pTesVL~E-YsQ~P~Ik~PIp~s~wtgpIGnvRyL~~~~~--~pa~~Ly~~W 429 (1267) T 1muk_A 358 DFASVRYIRDAMACTSGIFLV----R-TPTETVLQE-YTQSPEIKVPIPQKDWTGPIGEIRILKDTTS--SIARYLYRTW 429 (1267) T ss_dssp SHHHHHHHHHHHTSSCCCBCC----C-CHHHHHHHH-SSCCCCCSSCCCGGGEEEEETTEEEECTTCC--STHHHHHHHH T ss_pred CCHHHHHHHHHHHHCCCEEEE----C-CCHHHHHHH-HCCCCCCCCCCCHHHCCCCCCCEEEECCCCC--CHHHHHHHHH T ss_conf 605889999988643641686----2-860899997-3579854588986764687663676145678--6479999999 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99999999999999 Q gi|254780182|r 362 VAFREEVVVRRTKY 375 (910) Q Consensus 362 i~hR~evi~rRt~~ 375 (910) .+--.++..+...+ T Consensus 430 r~AA~~v~~~p~t~ 443 (1267) T 1muk_A 430 YLAAARMAAQPRTW 443 (1267) T ss_dssp HHHHHHHHHCGGGG T ss_pred HHHHHHHHHCCCCC T ss_conf 99999997097655 No 59 >3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi} Probab=31.21 E-value=16 Score=12.88 Aligned_cols=81 Identities=11% Similarity=0.130 Sum_probs=49.7 Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH-HHHHHHHHHHCCCCCCCCEE----EEHHHHHHHHCCCCCCCHHHHH Q ss_conf 099999876787779988631375400089736-78999999987899999811----3404255664366887047899 Q gi|254780182|r 20 SITDEMQNSYLTYAINVILGRAIPDLRDGLKPV-HRRILFGMMQMGVEWNKKYV----KCARISGEVMGKYHPHGNAAIY 94 (910) Q Consensus 20 ~~~~~m~~syl~Ya~svI~~RAlPd~rDGlKpv-~Rrily~m~~~~~~~~~~~~----K~a~ivg~v~gkyHPHGd~siy 94 (910) -|.|..+.+=...| -|+|||=+= .+..|- .+||+-++.++|..|+..-+ +..+++|-++...+.+....++ T Consensus 12 TikdIA~~agVS~a---TVSr~Ln~~-~~vs~~tr~rV~~~a~~lgY~pn~~a~~l~~~~~~~i~~~~~~~~~~~~~~~~ 87 (344) T 3kjx_A 12 TLRDVSEASGVSEM---TVSRVLRNR-GDVSDATRARVLAAAKELGYVPNKIAGALASNRVNLVAVIIPSLSNMVFPEVL 87 (344) T ss_dssp CHHHHHHHHCCCSH---HHHHHHTTC-SCCCHHHHHHHHHHHHHHTCCCCCCCSCSTTSCCSEEEEEESCSSSSSHHHHH T ss_pred CHHHHHHHHCCCHH---HHHHHHCCC-CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEEECCCCCCCHHHHHH T ss_conf 69999999895999---999997898-99999999999999999599748778876308751799961455672157889 Q ss_pred HHHHHHCCCH Q ss_conf 9999712201 Q gi|254780182|r 95 DALARMAQDW 104 (910) Q Consensus 95 ~a~v~maq~~ 104 (910) ..+.+.++.. T Consensus 88 ~~~~~~~~~~ 97 (344) T 3kjx_A 88 TGINQVLEDT 97 (344) T ss_dssp HHHHHHHTSS T ss_pred HHHHHHHHHH T ss_conf 8999999974 No 60 >3iq1_A DPS family protein; csgid, SAD, niaid, metal transport, structural genomics; 1.67A {Vibrio cholerae o1 biovar el tor str} Probab=30.34 E-value=6.8 Score=16.15 Aligned_cols=17 Identities=18% Similarity=0.110 Sum_probs=9.5 Q ss_pred HHHHHHHHHHHHHHCCC Q ss_conf 87406999999861899 Q gi|254780182|r 393 AVANLDEVVRIIRFSPN 409 (910) Q Consensus 393 Al~nIDeVI~iIR~S~d 409 (910) +.+.+|+|.+=||.-.. T Consensus 63 ~~~~~D~iAERI~~LGg 79 (159) T 3iq1_A 63 LQLKIDELAERILTLSA 79 (159) T ss_dssp HHHHHHHHHHHHHHTTC T ss_pred HHHHHHHHHHHHHHHCC T ss_conf 99999999999998078 No 61 >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane protein; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 Probab=30.14 E-value=16 Score=12.74 Aligned_cols=66 Identities=20% Similarity=0.209 Sum_probs=42.4 Q ss_pred CCCCEEEEEECCCCEEEEEHHHCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC Q ss_conf 56867999975993453017884866757741488760677776868999972899649999459989999901055 Q gi|254780182|r 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871 (910) Q Consensus 795 ~~~~~IL~vTe~G~GKRt~~~eyr~q~RGgkGv~~ik~~~~n~~g~lv~~~~V~~~DeIlliT~~G~iiR~~v~~I~ 871 (910) .....|+++|..||.-.-.+..= .=+-.-+++. +.+-.+..-.+..-++.++.+|+++.+.+++-. T Consensus 268 ~kygviyviTK~G~i~lyDleTg-------t~i~~nrIs~----~~iF~~~~~~~~~Gi~~Vnr~GqVl~v~vn~~~ 333 (494) T 1bpo_A 268 EKHDVVFLITKYGYIHLYDLETG-------TCIYMNRISG----ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (494) T ss_dssp TTTTEEEEEETTSEEEEEETTTC-------CEEEEEECCS----SCEEEEEEETTTTEEEEEETTCEEEEEEECTTT T ss_pred CCCCEEEEEECCCEEEEEECCCC-------CEEEEECCCC----CCEEEEECCCCCCCEEEECCCCEEEEEEECHHH T ss_conf 55688999956748999985667-------3777730578----844895056888858999379779999987022 No 62 >1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1 Probab=30.11 E-value=16 Score=12.74 Aligned_cols=12 Identities=17% Similarity=0.534 Sum_probs=4.7 Q ss_pred CCCCCHHHHHHH Q ss_conf 300029999999 Q gi|254780182|r 349 PERFTLIGILKA 360 (910) Q Consensus 349 P~~l~Lk~iL~~ 360 (910) |..+-++.+|++ T Consensus 49 ~~~~r~q~~ie~ 60 (390) T 1deq_A 49 PSGCRMKGLIDE 60 (390) T ss_pred CCHHHHHHHHHH T ss_conf 427789999999 No 63 >3lay_A Zinc resistance-associated protein; salmonella typhimurium LT2, ZRAP, periplasm, structural genomics; 2.70A {Salmonella enterica subsp} Probab=29.93 E-value=16 Score=12.71 Aligned_cols=65 Identities=15% Similarity=0.113 Sum_probs=45.0 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHHHHCCCCC Q ss_conf 236999999999878999988879999998999999999887530498---9999999998999998405688 Q gi|254780182|r 447 MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR---SRLLGIIKQELLSVKDELDTPR 516 (910) Q Consensus 447 f~lSe~QA~AILdMrL~rLt~LE~~kl~~E~~eL~~~I~~l~~IL~s~---~~l~~iI~~EL~eik~kygd~R 516 (910) -.||++|-.++-+++=.-. .+...-.++|.+.-.+|..++.++ .....-+.+|+.+++.+....| T Consensus 66 ~~LT~EQq~~~~~I~~~~~-----~~~~~Lr~qL~akr~EL~aLl~~~~~D~akI~aL~~eI~~Lr~qL~~~R 133 (175) T 3lay_A 66 SPLTTEQQATAQKIYDDYY-----TQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQR 133 (175) T ss_dssp --CCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 8899999999999999999-----9999999999999999999971799999999999999999999999999 No 64 >2khd_A Uncharacterized protein VC_A0919; alpha beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Vibrio cholerae o1 biovar el tor str} Probab=28.04 E-value=15 Score=13.16 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=18.3 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 5236999999999878999988879 Q gi|254780182|r 446 TMYLSEVQTRAILELRLARLTGLGR 470 (910) Q Consensus 446 ~f~lSe~QA~AILdMrL~rLt~LE~ 470 (910) .|.|+=.==.-|-+|+||.|.+||. T Consensus 79 ~f~FscqAEkmIFQL~~Rsl~~~~~ 103 (108) T 2khd_A 79 RFKFEVSAEKLIFELKTRALARLEH 103 (108) T ss_dssp EEECSSHHHHHHHHHHHHHHHHTCS T ss_pred EEEEEEEEEEEEEEECCCHHHHHHH T ss_conf 9999977444655300316766530 No 65 >1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1 Probab=27.88 E-value=18 Score=12.44 Aligned_cols=11 Identities=18% Similarity=0.425 Sum_probs=6.1 Q ss_pred EEEEEHHHCCC Q ss_conf 99975876235 Q gi|254780182|r 705 CVRFPISAIRV 715 (910) Q Consensus 705 ~lrF~~~evr~ 715 (910) +..|+.++|+. T Consensus 315 vC~fsl~~I~~ 325 (495) T 1q47_A 315 VCMYSMSDVRR 325 (495) T ss_dssp EEEECHHHHHH T ss_pred EEEEEHHHHHH T ss_conf 99978999999 No 66 >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Probab=27.72 E-value=18 Score=12.42 Aligned_cols=19 Identities=11% Similarity=-0.054 Sum_probs=11.7 Q ss_pred EEEECCCCCEEEEEEEECC Q ss_conf 7675289986999897336 Q gi|254780182|r 725 RGISLAKGDQVISMAIVLH 743 (910) Q Consensus 725 kgIkL~~~D~Vv~~~vi~~ 743 (910) |.+==+++.+++|+.++.. T Consensus 377 Kli~~~~~~~ilG~~~~g~ 395 (452) T 2cdu_A 377 SLVYDPKTRVILGGALSSM 395 (452) T ss_dssp EEEECTTTCBEEEEEEEES T ss_pred EEEEECCCCEEEEEEEECC T ss_conf 9999999798999999977 No 67 >2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Probab=27.55 E-value=18 Score=12.43 Aligned_cols=29 Identities=14% Similarity=0.262 Sum_probs=11.1 Q ss_pred CCHHHHHHHHHHHCCCHHCCCCCCCCCCC Q ss_conf 70478999999712201115613147887 Q gi|254780182|r 88 HGNAAIYDALARMAQDWSLRLLLIEGQGN 116 (910) Q Consensus 88 HGd~siy~a~v~maq~~~~r~plidg~Gn 116 (910) |.|+++++|+-.|...--...|.+|.+|. T Consensus 25 ~~d~~l~~a~~~m~~~~~~~lpVvd~~~~ 53 (144) T 2nyc_A 25 QMTTPVIDVIQMLTQGRVSSVPIIDENGY 53 (144) T ss_dssp CTTSBHHHHHHHHHHHTCSEEEEECTTCB T ss_pred CCCCCHHHHHHHHHHCCCCEEEEEECCCE T ss_conf 49092999999999859948999927992 No 68 >3dm8_A Uncharacterized protein RPA4348; siras, putative isomerase, structural genomics, PSI-2, protein structure initiative; HET: CE9; 1.80A {Rhodopseudomonas palustris} SCOP: d.17.4.20 Probab=27.16 E-value=18 Score=12.34 Aligned_cols=56 Identities=16% Similarity=0.159 Sum_probs=38.0 Q ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHH--------CC--CCCCCCCCCCCCHHHHHHHHHHCCCEEE Q ss_conf 8547899999988761877688888863--------45--8668874434475889999870120389 Q gi|254780182|r 192 THNLGEVVDGCVAVIDNPDIDLDALMEI--------IR--GPDFPTGAVILGRTGIKNAYATGRGSIV 249 (910) Q Consensus 192 pHNl~Ev~~a~~~~i~~p~~~~~eL~~~--------i~--GPDFPTGG~I~~~~~i~~~y~tGrG~i~ 249 (910) .|.+.+++.+...-++..+. +.++.. ++ ++-+|.+|...|++++.+.++.-..++. T Consensus 3 ~~~~~~~~r~~y~A~~~~d~--d~~~~l~~dDv~~~~~~~~~~~P~~G~~~G~~~~~~~~~~~~~~~~ 68 (143) T 3dm8_A 3 EHSLWRFSRALHRALNDRQT--EELATIIDDNIDWAIYGPIDMFPFFGARQGKAAVLEVCRQIADSVR 68 (143) T ss_dssp SCHHHHHHHHHHHHHHHCCC--HHHHHHEEEEEEEEEESCTTTCTTCEEEESHHHHHHHHHHHHHHEE T ss_pred CCHHHHHHHHHHHHHHCCCH--HHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC T ss_conf 43699999999999864799--9999864886599946876778855415468999999988865256 No 69 >2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens} Probab=27.12 E-value=16 Score=12.94 Aligned_cols=22 Identities=18% Similarity=0.412 Sum_probs=12.3 Q ss_pred HHHHHHHHHHHHHHHCCCCCCC Q ss_conf 9999999899999840568833 Q gi|254780182|r 497 LLGIIKQELLSVKDELDTPRRT 518 (910) Q Consensus 497 l~~iI~~EL~eik~kygd~RRT 518 (910) +..-+-.|+.+++++|..+|.- T Consensus 22 LD~eME~EieeLr~RYq~KRqP 43 (51) T 2jo8_A 22 LDPMMEQEIEEIRQKYQSKRQP 43 (51) T ss_dssp HHHHHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHCC T ss_conf 6688999999999998874343 No 70 >1o50_A CBS domain-containing predicted protein TM0935; structural genomics, JCSG, PSI, protein structure initiative; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Probab=26.82 E-value=13 Score=13.58 Aligned_cols=42 Identities=14% Similarity=0.343 Sum_probs=31.5 Q ss_pred HHHHHCCCCC---CCHHHHHHHHHHHCCCHHCCCCCCCCCCCC-CCC Q ss_conf 5566436688---704789999997122011156131478870-887 Q gi|254780182|r 78 SGEVMGKYHP---HGNAAIYDALARMAQDWSLRLLLIEGQGNF-GSV 120 (910) Q Consensus 78 vg~v~gkyHP---HGd~siy~a~v~maq~~~~r~plidg~Gnf-Gs~ 120 (910) |.++| ..+| +.|+++++|+-.|.+.-..++|.+|.+|++ |-+ T Consensus 18 v~~~m-~~~~v~v~~~~~v~ea~~~m~~~~~~~~pVvd~~~~~vG~i 63 (157) T 1o50_A 18 VCKLI-SLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMI 63 (157) T ss_dssp HTTSS-CCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEE T ss_pred HHHHC-CCCCEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEE T ss_conf 77648-88978999929399999999977980999992899899888 No 71 >1l1q_A Adenine phosphoribosyltransferase; aprtase, giardia lamblia, purine metabolism, catalytic loop; HET: 9DA; 1.85A {Giardia intestinalis} SCOP: c.61.1.1 PDB: 1l1r_A* Probab=26.51 E-value=16 Score=12.80 Aligned_cols=10 Identities=0% Similarity=0.172 Sum_probs=3.6 Q ss_pred CCEEEEEECC Q ss_conf 8459999246 Q gi|254780182|r 262 DREQIVVTEI 271 (910) Q Consensus 262 ~k~~ivItEi 271 (910) |+.-++|--+ T Consensus 117 G~rVLIVDDv 126 (186) T 1l1q_A 117 HDVVLLHDDV 126 (186) T ss_dssp TCCEEEEEEE T ss_pred CCEEEEEEEH T ss_conf 9989999534 No 72 >1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Probab=26.26 E-value=14 Score=13.35 Aligned_cols=43 Identities=12% Similarity=0.074 Sum_probs=21.0 Q ss_pred HHHHHCCC--CCCCHHHHHHHHHHHCCCHHCCCCCCCCCCCC-CCC Q ss_conf 55664366--88704789999997122011156131478870-887 Q gi|254780182|r 78 SGEVMGKY--HPHGNAAIYDALARMAQDWSLRLLLIEGQGNF-GSV 120 (910) Q Consensus 78 vg~v~gky--HPHGd~siy~a~v~maq~~~~r~plidg~Gnf-Gs~ 120 (910) |.|+|-+= .=+.++++++|+-.|.+.--...|.+|..|+| |-+ T Consensus 10 v~diM~~~~~~v~~~~sv~~a~~~m~~~~~~~~~Vvd~~~~~iGii 55 (133) T 1y5h_A 10 ARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGML 55 (133) T ss_dssp HHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEE T ss_pred HHHHCCCCCCEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEE T ss_conf 9997689984899919199999999984998899991998398787 No 73 >1itu_A Renal dipeptidase; glycoprotein, membrane-bound, zinc protease beta-lactamase, cilastatin, complex (hydrolase/inhibitor); HET: NAG CIL; 2.00A {Homo sapiens} SCOP: c.1.9.7 PDB: 1itq_A* Probab=25.85 E-value=19 Score=12.16 Aligned_cols=13 Identities=15% Similarity=0.197 Sum_probs=8.4 Q ss_pred CCHHCCCCCCCCC Q ss_conf 2011156131478 Q gi|254780182|r 102 QDWSLRLLLIEGQ 114 (910) Q Consensus 102 q~~~~r~plidg~ 114 (910) +.-..+.|++|+| T Consensus 8 ~~lh~~~~viD~H 20 (369) T 1itu_A 8 ERIMRDSPVIDGH 20 (369) T ss_dssp HHHHTTSCEEEEE T ss_pred HHHHCCCCEEEEC T ss_conf 9996489989805 No 74 >3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Probab=25.79 E-value=19 Score=12.15 Aligned_cols=44 Identities=20% Similarity=0.447 Sum_probs=31.1 Q ss_pred HHHHHHCCCCC---CCHHHHHHHHHHHCCCHHCCCCCCCCCCCC-CCCC Q ss_conf 25566436688---704789999997122011156131478870-8877 Q gi|254780182|r 77 ISGEVMGKYHP---HGNAAIYDALARMAQDWSLRLLLIEGQGNF-GSVD 121 (910) Q Consensus 77 ivg~v~gkyHP---HGd~siy~a~v~maq~~~~r~plidg~Gnf-Gs~d 121 (910) .|+|+|-+ .| +-++++.+|+-.|.+.-....|.+|.+|.+ |-+. T Consensus 2 ~V~diM~~-~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~G~it 49 (122) T 3kpb_A 2 LVKDILSK-PPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIIT 49 (122) T ss_dssp BHHHHCCS-CCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEEC T ss_pred CHHHCCCC-CCEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCEEEEEE T ss_conf 95682889-9728989193999999999879829999908992999988 No 75 >1tvf_A PBP4, penicillin binding protein 4; structural genomics, nysgxrc target, SAV0642, PSI, protein structure initiative; 2.00A {Staphylococcus aureus} SCOP: b.105.1.2 e.3.1.1 Probab=25.46 E-value=19 Score=12.10 Aligned_cols=11 Identities=18% Similarity=0.468 Sum_probs=6.8 Q ss_pred CCCCHHHHHHH Q ss_conf 00029999999 Q gi|254780182|r 350 ERFTLIGILKA 360 (910) Q Consensus 350 ~~l~Lk~iL~~ 360 (910) ..++++++|.. T Consensus 110 ~~~tv~dLL~~ 120 (369) T 1tvf_A 110 QVWTIADLLQI 120 (369) T ss_dssp CEEEHHHHHHH T ss_pred CEEEHHHHHHH T ss_conf 79759999998 No 76 >3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Probab=25.24 E-value=19 Score=12.07 Aligned_cols=43 Identities=14% Similarity=0.128 Sum_probs=24.9 Q ss_pred HHHHHC---C-CCCCCHHHHHHHHHHHCCCHHCCCCCCCCCCCC-CCC Q ss_conf 556643---6-688704789999997122011156131478870-887 Q gi|254780182|r 78 SGEVMG---K-YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF-GSV 120 (910) Q Consensus 78 vg~v~g---k-yHPHGd~siy~a~v~maq~~~~r~plidg~Gnf-Gs~ 120 (910) |.|+|- + ++=+-+.++.+|+-.|.+.=-.+.|.+|..|+| |-+ T Consensus 17 v~dim~p~~~v~~v~~~~~l~ea~~~m~~~~~s~~pVvd~~~~~vG~i 64 (150) T 3lqn_A 17 VKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLI 64 (150) T ss_dssp HHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEE T ss_pred HHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEE T ss_conf 578388776438985939699999999984993999995899799999 No 77 >2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxane, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C Probab=25.08 E-value=20 Score=12.05 Aligned_cols=15 Identities=13% Similarity=0.129 Sum_probs=5.8 Q ss_pred EEEEEECCCEEEEEE Q ss_conf 699993698599975 Q gi|254780182|r 695 DILLTTKLGQCVRFP 709 (910) Q Consensus 695 ~Iil~T~~G~~lrF~ 709 (910) .+.+.|.+|+-+... T Consensus 61 ~~~l~ssDg~~VtV~ 75 (142) T 2pi2_E 61 MFILSDGEGKNGTIE 75 (142) T ss_dssp EEEEECTTSCEEEEE T ss_pred EEEEECCCCCEEEEE T ss_conf 899994999999999 No 78 >2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A Probab=24.56 E-value=20 Score=11.99 Aligned_cols=84 Identities=14% Similarity=0.223 Sum_probs=44.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH-HHHHHHHHHCCCCCCCCE----EEEHHHHHHHHCCCCCCCHHHHHH Q ss_conf 999998767877799886313754000897367-899999998789999981----134042556643668870478999 Q gi|254780182|r 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH-RRILFGMMQMGVEWNKKY----VKCARISGEVMGKYHPHGNAAIYD 95 (910) Q Consensus 21 ~~~~m~~syl~Ya~svI~~RAlPd~rDGlKpv~-Rrily~m~~~~~~~~~~~----~K~a~ivg~v~gkyHPHGd~siy~ 95 (910) |.|..+.+ ..|.+ -|+|||=. +.+..|-- +||+=+..+||..|+..- .+..+++|-++....-+-...++. T Consensus 5 i~dIA~~a--GVS~~-TVSr~Ln~-~~~vs~~tr~kV~~~a~elgY~pn~~a~~l~~~~s~~I~~~~~~~~~~~~~~~~~ 80 (332) T 2hsg_A 5 IYDVAREA--SVSMA-TVSRVVNG-NPNVKPSTRKKVLETIERLGYRPNAVARGLASKKTTTVGVIIPDISNIFYAELAR 80 (332) T ss_dssp HHHHHHHT--TSCHH-HHHHHHTT-CTTSCHHHHHHHHHHHHHHTCCSCHHHHHHTTC-CCEEEEEEC--CCSHHHHHHH T ss_pred HHHHHHHH--CCCHH-HHHHHHCC-CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEEEEECCCCCHHHHHHH T ss_conf 99999998--97999-99999789-5999999999999999996898688888764178738999840146720146788 Q ss_pred HHHHHCCCHHCCC Q ss_conf 9997122011156 Q gi|254780182|r 96 ALARMAQDWSLRL 108 (910) Q Consensus 96 a~v~maq~~~~r~ 108 (910) ++...++...... T Consensus 81 ~~~~~~~~~g~~~ 93 (332) T 2hsg_A 81 GIEDIATMYKYNI 93 (332) T ss_dssp HHHHHHHHHTCEE T ss_pred HHHHHHHHHHHHE T ss_conf 9999987631221 No 79 >2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A Probab=24.06 E-value=18 Score=12.43 Aligned_cols=58 Identities=12% Similarity=0.167 Sum_probs=30.3 Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHCC-CCCHHHHH---HHHCCC-CCEEEEEEECCCCCHHHHH Q ss_conf 845999924644352899999999998716-65014458---730374-6557999947988778999 Q gi|254780182|r 262 DREQIVVTEIPYQVNKAAMLEKIAELVREK-RIVDIADL---RDESDR-QGYRVVIELKRGASADVIL 324 (910) Q Consensus 262 ~k~~ivItEiPY~vnk~~lie~Ia~lv~~~-ki~gI~di---rDeSdr-~giRivielKr~~~~~~vl 324 (910) ..+.|.|.-|||.+++..|.+- ...- .+..+..| .|...+ .|.- -|+.....+++..| T Consensus 43 ~~~~v~V~nLp~~~t~~dl~~~----F~~~~~~~~~~~v~~~~~~~g~~~G~a-fVeF~~~e~a~~Al 105 (136) T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNF----LSDCTIHDGAAGVHFIYTREGRQSGEA-FVELGSEDDVKMAL 105 (136) T ss_dssp TTCEEEEESCCTTCCHHHHHHH----TTTCCCSSSSTTEEEEECSSSCEEEEE-EEECSSHHHHHHHH T ss_pred CCEEEEEECCCCCCCHHHHHHH----HHCCCCCCCEEEEEEEECCCCCEEEEE-EEEECCHHHHHHHH T ss_conf 7169999598975999999999----742456785589998878999871569-99978999999999 No 80 >1lwu_C Fibrinogen gamma chain; coiled coil, heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C* Probab=23.95 E-value=20 Score=11.89 Aligned_cols=42 Identities=12% Similarity=0.219 Sum_probs=25.3 Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC Q ss_conf 999899999999988753049899999999989999984056 Q gi|254780182|r 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514 (910) Q Consensus 473 l~~E~~eL~~~I~~l~~IL~s~~~l~~iI~~EL~eik~kygd 514 (910) +++-......+|+++.++|.....+..-+..++.+++..... T Consensus 17 l~~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~~~~ 58 (323) T 1lwu_C 17 LEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSR 58 (323) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999887789999999999999999999999999999987545 No 81 >2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens} Probab=23.91 E-value=20 Score=11.88 Aligned_cols=18 Identities=22% Similarity=0.218 Sum_probs=15.2 Q ss_pred CCCCHHHHHHHHHHHHHH Q ss_conf 236999999999878999 Q gi|254780182|r 447 MYLSEVQTRAILELRLAR 464 (910) Q Consensus 447 f~lSe~QA~AILdMrL~r 464 (910) +.||+.|...|=|+|=|- T Consensus 55 ~~Lte~Ql~lirDIRRRG 72 (91) T 2kz5_A 55 YPLTESQLALVRDIRRRG 72 (91) T ss_dssp SCCCHHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHC T ss_conf 799999999999999802 No 82 >1jid_A Signal recognition particle 19 kDa protein; signal recognition particle (SRP), protein-RNA complex, GGAG tetraloop, signaling protein/RNA complex; HET: 5BU A23; 1.80A {Homo sapiens} SCOP: d.201.1.1 PDB: 3ktv_B* 1mfq_B* 1ry1_B* 2go5_B 2j37_B Probab=23.31 E-value=21 Score=11.79 Aligned_cols=86 Identities=14% Similarity=0.265 Sum_probs=49.6 Q ss_pred CCCCEEEHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEEEEE Q ss_conf 67610101331789854789999998876187768888886345866887443447588999987012038999988654 Q gi|254780182|r 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 (910) Q Consensus 178 G~~GIAvGmaTnippHNl~Ev~~a~~~~i~~p~~~~~eL~~~i~GPDFPTGG~I~~~~~i~~~y~tGrG~i~iR~k~~ie 257 (910) =+.|==|.-.-.++-=++.|+.+||..+==+..+.-+ +.-| -||.- +.+ =+|+|+|.-+ T Consensus 29 r~eGRRV~k~~aV~~Pt~~EI~~a~~~Lgl~~~~E~~---K~yP-r~w~~-----------~~~--~~GRVrV~lk---- 87 (128) T 1jid_A 29 IAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKN---KMYS-REWNR-----------DVQ--YRGRVRVQLK---- 87 (128) T ss_dssp TTTTCCSCTTTCBSSCCHHHHHHHHHHTTCCEEEETT---CCCT-TCCCC-----------CGG--GCCEEEECCB---- T ss_pred HHHCCCCCHHHHCCCCCHHHHHHHHHHCCCCEEEECC---CCCC-CCCCC-----------CCC--CCCEEEEEEE---- T ss_conf 5525664887846798999999999985998787337---7787-44355-----------333--5865999876---- Q ss_pred ECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHC Q ss_conf 336784599992464435289999999999871 Q gi|254780182|r 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE 290 (910) Q Consensus 258 ~~~~~k~~ivItEiPY~vnk~~lie~Ia~lv~~ 290 (910) + ..| .++..++| +|..|+.+||+.+.+ T Consensus 88 ~-~~G--~~~~~~~~---sK~~Ll~~Ia~~I~k 114 (128) T 1jid_A 88 Q-EDG--SLCLVQFP---SRKSVMLYAAEMIPK 114 (128) T ss_dssp C-TTS--CBSCTTCS---SHHHHHHHHHHHGGG T ss_pred C-CCC--CCCCCCCC---CHHHHHHHHHHHHHH T ss_conf 7-999--87478889---999999999998876 No 83 >2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A* Probab=22.98 E-value=21 Score=11.74 Aligned_cols=16 Identities=31% Similarity=0.648 Sum_probs=11.4 Q ss_pred CCCCCCCCCCCCCCCC Q ss_conf 5613147887088776 Q gi|254780182|r 107 RLLLIEGQGNFGSVDG 122 (910) Q Consensus 107 r~plidg~GnfGs~dg 122 (910) ...++.+||||-+-|| T Consensus 9 ~~~~~~~~~~~~~~~~ 24 (499) T 2r60_A 9 HVAFLNPQGNFDPADS 24 (499) T ss_dssp EEEEECCSSCCCTTCT T ss_pred EEEEECCCCCCCCCCC T ss_conf 5999878766674334 No 84 >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2ve2_A* Probab=22.58 E-value=22 Score=11.68 Aligned_cols=18 Identities=11% Similarity=0.183 Sum_probs=7.8 Q ss_pred EEEECCCCCEEEEEEEEC Q ss_conf 767528998699989733 Q gi|254780182|r 725 RGISLAKGDQVISMAIVL 742 (910) Q Consensus 725 kgIkL~~~D~Vv~~~vi~ 742 (910) |.+--+++.+|+|+.++. T Consensus 413 kli~d~~~~~ILGa~~vG 430 (490) T 1fec_A 413 RIVTNHADGEVLGVHMLG 430 (490) T ss_dssp EEEEETTTTEEEEEEEES T ss_pred EEEEECCCCEEEEEEEEC T ss_conf 999999989799999988 No 85 >2ckz_A DNA-directed RNA polymerase III 18 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae} Probab=22.53 E-value=15 Score=13.14 Aligned_cols=13 Identities=23% Similarity=0.393 Sum_probs=7.3 Q ss_pred CCCHHHHHHHHHH Q ss_conf 3699999999987 Q gi|254780182|r 448 YLSEVQTRAILEL 460 (910) Q Consensus 448 ~lSe~QA~AILdM 460 (910) .|||.|.+.||++ T Consensus 144 R~~ee~~~~il~~ 156 (161) T 2ckz_A 144 RFDEKTIEEMLEI 156 (161) T ss_dssp ------------- T ss_pred CCCHHHHHHHHHH T ss_conf 4898999999999 No 86 >3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus} Probab=22.33 E-value=22 Score=11.64 Aligned_cols=47 Identities=15% Similarity=0.207 Sum_probs=35.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 99999899999999988753049899999999989999984056883 Q gi|254780182|r 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517 (910) Q Consensus 471 ~kl~~E~~eL~~~I~~l~~IL~s~~~l~~iI~~EL~eik~kygd~RR 517 (910) -.|+++..+|.++-+.++.-|.++.+-.+-+-.=+..+.+++.|+-+ T Consensus 10 YaLkDqV~eL~~e~krlkk~leeEqkARk~LE~~vrk~lk~~~d~~~ 56 (61) T 3l4f_A 10 YALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNMNDPAW 56 (61) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSE T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 99999999999999999988889999999999999999987067852 No 87 >2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho gluconate aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A Probab=22.15 E-value=22 Score=11.61 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=20.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 899998887999999899999999988 Q gi|254780182|r 461 RLARLTGLGRDDIRNELNSLGIEIKEC 487 (910) Q Consensus 461 rL~rLt~LE~~kl~~E~~eL~~~I~~l 487 (910) +|..|+.-++.+|++.+++|.++++++ T Consensus 260 P~~~l~~~~~~~l~~~l~~l~~~i~~l 286 (288) T 2nuw_A 260 PIFPLTDEEALSLKREIEPLKRKIQEL 286 (288) T ss_dssp TSCCCCHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999999999997 No 88 >1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A* Probab=22.10 E-value=22 Score=11.61 Aligned_cols=34 Identities=15% Similarity=0.325 Sum_probs=15.5 Q ss_pred CEEEEEEECCCC----CHHHHHHHHHHHCCHHCCCCCEE Q ss_conf 557999947988----77899999997610110000002 Q gi|254780182|r 307 GYRVVIELKRGA----SADVILNQLYRYTSLQSLFSVNM 341 (910) Q Consensus 307 giRivielKr~~----~~~~vln~Lyk~T~Lq~sf~~N~ 341 (910) |++|++.||.++ ++..|-+.+=||.+. .+|++++ T Consensus 211 GT~I~L~Lk~d~~Efle~~rl~~lIkkYS~f-I~~PI~l 248 (264) T 1yc1_A 211 GTKVILHLKEDQTEYLEERRIKEIVKKHSQF-IGYPITL 248 (264) T ss_dssp EEEEEEEECGGGGGGGSHHHHHHHHHHHTTT-CSSCEEE T ss_pred CCEEEEEECCCHHHHCCHHHHHHHHHHHHHC-CCCCEEE T ss_conf 9489999688727866998999999987636-6868699 No 89 >2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Probab=22.01 E-value=21 Score=11.86 Aligned_cols=57 Identities=11% Similarity=0.232 Sum_probs=28.2 Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHCCC-CCHHHHH---HHHCCC-CCEEEEEEECCCCCHHHH Q ss_conf 8459999246443528999999999987166-5014458---730374-655799994798877899 Q gi|254780182|r 262 DREQIVVTEIPYQVNKAAMLEKIAELVREKR-IVDIADL---RDESDR-QGYRVVIELKRGASADVI 323 (910) Q Consensus 262 ~k~~ivItEiPY~vnk~~lie~Ia~lv~~~k-i~gI~di---rDeSdr-~giRivielKr~~~~~~v 323 (910) ....|-|.-|||.++...|.+ +...-. +..+.+| +|.+.+ .|.-+ |+.+...+++.. T Consensus 16 ~~~~v~v~nLP~~~te~dI~~----~F~~~~~~~~~~~v~~~~~~~g~~~G~af-V~F~~~e~a~~a 77 (118) T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQN----FLSDCTIHDGVAGVHFIYTREGRQSGEAF-VELESEDDVKLA 77 (118) T ss_dssp CCCEEEEESCCTTCCHHHHHH----HTTTSCBTTGGGGEEEEECSSSCEEEEEE-EEBSSHHHHHHH T ss_pred CCEEEEEECCCCCCCHHHHHH----HHHHCCCCCCEEEEEEEECCCCCCCCEEE-EEECCHHHHHHH T ss_conf 867999929898597999999----98744557856999988789997525699-998999999999 No 90 >1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} SCOP: h.1.28.1 PDB: 2zxx_A* Probab=21.86 E-value=22 Score=11.57 Aligned_cols=34 Identities=15% Similarity=0.196 Sum_probs=22.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH Q ss_conf 7999999899999999988753049899999999 Q gi|254780182|r 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502 (910) Q Consensus 469 E~~kl~~E~~eL~~~I~~l~~IL~s~~~l~~iI~ 502 (910) +.+.++.|...|.++...|..++..-..+-.+|. T Consensus 46 ~ie~~~eei~~lk~en~~L~ela~~~~~la~vl~ 79 (83) T 1wlq_A 46 EIEQKDSEIARLRKENKDLAEVAEHVQYMAEVIE 79 (83) T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9998889999999999999999999999999999 No 91 >1vr9_A CBS domain protein/ACT domain protein; TM0892, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Probab=21.84 E-value=21 Score=11.70 Aligned_cols=44 Identities=23% Similarity=0.375 Sum_probs=32.7 Q ss_pred HHHHHCCCCC--CCHHHHHHHHHHHCCCHHCCCCCCCCCCCC-CCCC Q ss_conf 5566436688--704789999997122011156131478870-8877 Q gi|254780182|r 78 SGEVMGKYHP--HGNAAIYDALARMAQDWSLRLLLIEGQGNF-GSVD 121 (910) Q Consensus 78 vg~v~gkyHP--HGd~siy~a~v~maq~~~~r~plidg~Gnf-Gs~d 121 (910) |.|.|-+--| +-++++.+|+-.|.+.-..+.|.+|+.|-+ |.+. T Consensus 15 V~d~m~~~~~~v~~~~sv~ea~~~m~~~~~~~lpVvd~~g~l~Giit 61 (213) T 1vr9_A 15 VKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVN 61 (213) T ss_dssp GGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEE T ss_pred HHHHCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEE T ss_conf 28964689809999294999999999829968999928991999998 No 92 >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), structural genomics; HET: ACO UNL; 1.70A {Mus musculus} Probab=21.80 E-value=22 Score=11.56 Aligned_cols=14 Identities=29% Similarity=0.278 Sum_probs=6.9 Q ss_pred CCCHHHHHHHHHHH Q ss_conf 36999999999878 Q gi|254780182|r 448 YLSEVQTRAILELR 461 (910) Q Consensus 448 ~lSe~QA~AILdMr 461 (910) ++|+.|++++++.+ T Consensus 222 gls~ee~~~ri~~Q 235 (281) T 2f6r_A 222 GLSEAAAQSRLQSQ 235 (281) T ss_dssp CCCHHHHHHHHHTS T ss_pred CCCHHHHHHHHHHC T ss_conf 99999999999938 No 93 >1zn8_A APRT, adenine phosphoribosyltransferase; glycosyltransferase, polymorphism, purine salvage; HET: AMP; 1.76A {Homo sapiens} SCOP: c.61.1.1 PDB: 1ore_A* 1zn7_A* 1zn9_A* Probab=21.77 E-value=19 Score=12.10 Aligned_cols=10 Identities=10% Similarity=0.228 Sum_probs=4.2 Q ss_pred HHHCCHHHHH Q ss_conf 5304989999 Q gi|254780182|r 489 DILSSRSRLL 498 (910) Q Consensus 489 ~IL~s~~~l~ 498 (910) .||.+++... T Consensus 31 ~ll~dp~~~~ 40 (180) T 1zn8_A 31 PVLKDPASFR 40 (180) T ss_dssp HHHHSHHHHH T ss_pred HHHCCHHHHH T ss_conf 4761999999 No 94 >3khp_A MAOC family protein; dehydrogenase, oxidoreductase, structural genomics; HET: TLA; 2.30A {Mycobacterium tuberculosis H37RV} Probab=21.61 E-value=3 Score=19.33 Aligned_cols=11 Identities=27% Similarity=0.325 Sum_probs=4.9 Q ss_pred CEECCCCCCCCH Q ss_conf 503432273211 Q gi|254780182|r 164 PVVLCARYPNVL 175 (910) Q Consensus 164 P~vlP~~~P~lL 175 (910) +.|||+ ||.++ T Consensus 71 ~~vlPT-Favv~ 81 (311) T 3khp_A 71 QQVLPT-YAVIC 81 (311) T ss_dssp CCCCGG-GHHHH T ss_pred CCCCCE-EHHHC T ss_conf 806874-03014 No 95 >2gxf_A Hypothetical protein YYBH; alpha-beta protein., structural genomics, PSI, protein structure initiative; HET: MES; 3.10A {Bacillus subtilis} SCOP: d.17.4.22 Probab=21.50 E-value=22 Score=11.51 Aligned_cols=47 Identities=32% Similarity=0.558 Sum_probs=26.6 Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHCCCCC----CCCCCCCCCHHHHHHHHHHC Q ss_conf 789999998876187768888886345866----88744344758899998701 Q gi|254780182|r 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPD----FPTGAVILGRTGIKNAYATG 244 (910) Q Consensus 195 l~Ev~~a~~~~i~~p~~~~~eL~~~i~GPD----FPTGG~I~~~~~i~~~y~tG 244 (910) +++++++...-+.+.|+ +.|+.+. -|| +|+|..+.|++.|++.|..- T Consensus 5 I~~l~~~~~~A~~~~D~--d~l~~l~-a~Dav~~~~~g~~~~G~~ai~~~~~~~ 55 (142) T 2gxf_A 5 LKDIISACDLAIQNEDF--DTLMNYY-SEDAVLVVKPGMIARGKEEIKKAFITI 55 (142) T ss_dssp HHHHHHHHHHHHHTTCH--HHHTTSE-EEEEEEECSSSCEEEHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHCCCH--HHHHHHC-CCCEEEECCCCCEECCHHHHHHHHHHH T ss_conf 99999999999986999--9999730-478089848996552789999999999 No 96 >3f40_A Uncharacterized NTF2-like protein; YP_677363.1, NTF2-like protein of unknown function, structural genomics; HET: MSE; 1.27A {Cytophaga hutchinsonii atcc 33406} Probab=21.19 E-value=23 Score=11.46 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=9.3 Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHCCC Q ss_conf 13317898547899999988761877 Q gi|254780182|r 185 GMATNIPTHNLGEVVDGCVAVIDNPD 210 (910) Q Consensus 185 GmaTnippHNl~Ev~~a~~~~i~~p~ 210 (910) ||+|.+-| +|++.+-+.-+...| T Consensus 1 ~m~~~~t~---~~lv~~y~~A~~~~D 23 (114) T 3f40_A 1 GMKTQITT---RDLVLEFIHALNTEN 23 (114) T ss_dssp -CCSCCCH---HHHHHHHHHHHHTTC T ss_pred CCCCCCCH---HHHHHHHHHHHHCCC T ss_conf 98766788---999999999987339 No 97 >3ctp_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens qymf} Probab=21.16 E-value=18 Score=12.40 Aligned_cols=70 Identities=9% Similarity=0.016 Sum_probs=43.8 Q ss_pred HHHHCCCCCCCCCCHH-HHHHHHHHHHCCCCCCCCE----EEEHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHCC Q ss_conf 8631375400089736-7899999998789999981----134042556643668870478999999712201115 Q gi|254780182|r 37 ILGRAIPDLRDGLKPV-HRRILFGMMQMGVEWNKKY----VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107 (910) Q Consensus 37 I~~RAlPd~rDGlKpv-~Rrily~m~~~~~~~~~~~----~K~a~ivg~v~gkyHPHGd~siy~a~v~maq~~~~r 107 (910) -|+|||=+= .+.+|- ..||+-++.++|..|+..- .+..+++|-++..+.-+-...++.++-+.++..... T Consensus 18 TVSr~Ln~~-~~vs~~tr~rV~~~a~~lgY~pn~~a~~l~~~~~~~I~~~~~~~~~~~~~~~~~~i~~~~~~~g~~ 92 (330) T 3ctp_A 18 TVSRHLNNT-GYVSEDAREKIQKVVDELNYTPNALARAMFTKNSKTIGLMVPNISNPFFNQMASVIEEYAKNKGYT 92 (330) T ss_dssp -------------------------------------------CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCE T ss_pred HHHHHHCCC-CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCE T ss_conf 999996897-999999999999999995898798889761278727999716778852004567999999977998 No 98 >1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural genomics, joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans} Probab=21.16 E-value=23 Score=11.46 Aligned_cols=49 Identities=14% Similarity=0.159 Sum_probs=34.3 Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHHCC Q ss_conf 98887-999999899999999988753049---89999999998999998405 Q gi|254780182|r 465 LTGLG-RDDIRNELNSLGIEIKECLDILSS---RSRLLGIIKQELLSVKDELD 513 (910) Q Consensus 465 Lt~LE-~~kl~~E~~eL~~~I~~l~~IL~s---~~~l~~iI~~EL~eik~kyg 513 (910) +..|+ ....-+++..+.+.++++..++.+ +..+.....+|+.++.++.- T Consensus 52 ~s~L~~~v~~~~~l~~~~~dl~el~eLl~e~~~D~el~ela~eEl~~~~~~l~ 104 (371) T 1zbt_A 52 EANSRETVAVYREYKQVVQNIADAQEMIKDASGDPELEEMAKEELKNSKVAKE 104 (371) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 99899999999999999987999999985136885799999999987554589 No 99 >1b8x_A Protein (AML-1B); nuclear matrix targeting signal protein; 2.70A {Escherichia coli} SCOP: a.45.1.1 c.47.1.5 Probab=21.12 E-value=23 Score=11.45 Aligned_cols=12 Identities=8% Similarity=0.313 Sum_probs=4.6 Q ss_pred HHHHHHHCCCCC Q ss_conf 999998405688 Q gi|254780182|r 505 LLSVKDELDTPR 516 (910) Q Consensus 505 L~eik~kygd~R 516 (910) +-.+|+=...+| T Consensus 185 rP~Vkkyl~S~r 196 (280) T 1b8x_A 185 IPQIDKYLKSSK 196 (280) T ss_dssp SHHHHTTTTSSS T ss_pred CHHHHHHHCCCC T ss_conf 999999983967 No 100 >1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Probab=20.99 E-value=21 Score=11.86 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=26.5 Q ss_pred HHHHHC---CC-CCCCHHHHHHHHHHHCCCHHCCCCCCCCCCCC-CCC Q ss_conf 556643---66-88704789999997122011156131478870-887 Q gi|254780182|r 78 SGEVMG---KY-HPHGNAAIYDALARMAQDWSLRLLLIEGQGNF-GSV 120 (910) Q Consensus 78 vg~v~g---ky-HPHGd~siy~a~v~maq~~~~r~plidg~Gnf-Gs~ 120 (910) |+++|= ++ +=+-+.++.+|+-.|.+.--.+.|.+|.+|++ |-+ T Consensus 16 V~~~mip~~~v~~v~~~~~l~~a~~~m~~~~~s~ipVvd~~g~lvGii 63 (159) T 1yav_A 16 VGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLI 63 (159) T ss_dssp HHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEE T ss_pred HHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCEEEEEECCCCEEEEEE T ss_conf 999697456469996909699999999975985999991883597677 No 101 >3ebt_A Uncharacterized NTF2-like protein; YP_110153.1, NTF2-like protein of unknown function, structural genomics; 1.30A {Burkholderia pseudomallei K96243} SCOP: d.17.4.9 Probab=20.89 E-value=23 Score=11.42 Aligned_cols=56 Identities=14% Similarity=0.178 Sum_probs=33.1 Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH--------CCCC--CCCCCCCCCCHHHHHHHHHHCCCEE Q ss_conf 13317898547899999988761877688888863--------4586--6887443447588999987012038 Q gi|254780182|r 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI--------IRGP--DFPTGAVILGRTGIKNAYATGRGSI 248 (910) Q Consensus 185 GmaTnippHNl~Ev~~a~~~~i~~p~~~~~eL~~~--------i~GP--DFPTGG~I~~~~~i~~~y~tGrG~i 248 (910) ||++| .|++.....-....|+ +.++++ .|+| +.|.+|...|.+++.+.+..-...+ T Consensus 1 ~ms~n------~~~v~~~~~a~~~~D~--~~~~~~~~dD~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 66 (132) T 3ebt_A 1 GMSNN------MQTVRESYEAFHRRDL--PGVLAALAPDVRWTHPDGMSPYGLGGTKHGHDEVIAFIRHVPTHI 66 (132) T ss_dssp -CCHH------HHHHHHHHHHHHTTCH--HHHHTTEEEEEEEEECGGGGGGTCCEEEEHHHHHHHHHHHGGGTE T ss_pred CCCHH------HHHHHHHHHHHHCCCH--HHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCC T ss_conf 98749------9999999999986899--899986186669996478777887764210899999987343236 No 102 >3bq9_A Predicted rossmann fold nucleotide-binding domain-containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica OS145} Probab=20.86 E-value=23 Score=11.41 Aligned_cols=83 Identities=14% Similarity=0.169 Sum_probs=48.0 Q ss_pred CCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH--HHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEC Q ss_conf 52369999999998789999-88879999998999999999887--5304989999999998999998405688331001 Q gi|254780182|r 446 TMYLSEVQTRAILELRLARL-TGLGRDDIRNELNSLGIEIKECL--DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE 522 (910) Q Consensus 446 ~f~lSe~QA~AILdMrL~rL-t~LE~~kl~~E~~eL~~~I~~l~--~IL~s~~~l~~iI~~EL~eik~kygd~RRT~I~~ 522 (910) .+.|+..|...-|.--|||- ++.=.-.++++- ...|++.- +|=++++ |.+-+.++-+.|-...|-++-. T Consensus 369 ~l~l~~~q~~~~laa~lrrafsgivagnvk~~~---~~~i~~~g~~~~~gd~~-----~m~~~d~ll~~fv~q~rmklp~ 440 (460) T 3bq9_A 369 ALNLHPDQPKERLAADLRRAFSAIVAGNVKDEG---IRQIRKNGVFTIHGEQS-----LMKRLDELLRAFVEQGRMKLPG 440 (460) T ss_dssp TCCBCTTSCHHHHHHHHHHHHHHHHHHHHCHHH---HHHHHHHCSEEEEBCHH-----HHHHHHHHHHHHHHTTCSSCTT T ss_pred HCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHH---HHHHHHCCCCEECCCHH-----HHHHHHHHHHHHHHHCCCCCCC T ss_conf 264787899899999999885000456648899---99999629961068899-----9999999999999838766898 Q ss_pred CCCCCCCCCCCCCCCEEEEEECCC Q ss_conf 343453010145678189990797 Q gi|254780182|r 523 GLLDMEDEDCIVREDMVVTVSHLG 546 (910) Q Consensus 523 ~~~~i~~EdlI~~E~vvV~lS~~G 546 (910) .. -+||.-++|..| T Consensus 441 ~~----------y~pcy~i~~~~~ 454 (460) T 3bq9_A 441 SV----------YNPCYKVITDEG 454 (460) T ss_dssp SC----------CCCSEEEEC--- T ss_pred CC----------CCCCEEEECCCC T ss_conf 77----------877757744666 No 103 >2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, binary complex; HET: GDP; 2.40A {Mycobacterium smegmatis str} PDB: 2gej_A* Probab=20.81 E-value=23 Score=11.40 Aligned_cols=11 Identities=9% Similarity=-0.043 Sum_probs=5.4 Q ss_pred HHHHHHHHHHC Q ss_conf 69999998618 Q gi|254780182|r 397 LDEVVRIIRFS 407 (910) Q Consensus 397 IDeVI~iIR~S 407 (910) .+++.+.++.| T Consensus 273 ~~~~~~~l~~a 283 (406) T 2gek_A 273 DATKASAMRSA 283 (406) T ss_dssp HHHHHHHHHHS T ss_pred CCHHHHHHHCC T ss_conf 20677776403 No 104 >1uyl_A HSP 86, heat shock protein HSP 90-alpha; ATPase, chaperone, ATP-binding; 1.4A {Homo sapiens} SCOP: d.122.1.1 PDB: 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* 2vcj_A* 2wi1_A* 2wi2_A* 2wi3_A* 2wi4_A* 2wi5_A* ... Probab=20.66 E-value=23 Score=11.38 Aligned_cols=31 Identities=29% Similarity=0.349 Sum_probs=12.9 Q ss_pred EEEECCCCEEEEECCCCCCCCCCCCCCCCEEEEE Q ss_conf 9995489399982000432244456554124545 Q gi|254780182|r 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623 (910) Q Consensus 590 LfFTs~Gkvy~l~v~~IP~~sr~skG~pi~nll~ 623 (910) ...++.+..|.+.... +.+..+|+.|.-.++ T Consensus 161 ~w~s~g~g~~~i~~~~---~~~~~~GT~I~L~lk 191 (236) T 1uyl_A 161 AWESSAGGSFTVRTDT---GEPMGRGTKVILHLK 191 (236) T ss_dssp EEEECSTTEEEEEECC---SSCCSSEEEEEEEEC T ss_pred EEEECCCCCEEEEEEC---CCCCCCCCEEEEEEC T ss_conf 0781378873798504---555676617999847 No 105 >3al0_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima} Probab=20.47 E-value=23 Score=11.35 Aligned_cols=14 Identities=36% Similarity=0.695 Sum_probs=5.8 Q ss_pred HHHHCCCCCCCCCC Q ss_conf 88634586688744 Q gi|254780182|r 216 LMEIIRGPDFPTGA 229 (910) Q Consensus 216 L~~~i~GPDFPTGG 229 (910) |++++-.|||-++- T Consensus 155 LiEIvT~Pd~~s~e 168 (482) T 3al0_B 155 LIEIVTEPDISSPR 168 (482) T ss_dssp EEEEEECTTCCSHH T ss_pred EEEEEECCCCCCHH T ss_conf 47998238988889 No 106 >3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, structural genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Probab=20.28 E-value=24 Score=11.32 Aligned_cols=48 Identities=10% Similarity=0.147 Sum_probs=30.4 Q ss_pred EEHHHHHHHHCC----C-CCCCHHHHHHHHHHHCCCHHCCCCCCCCCCCC-CCC Q ss_conf 340425566436----6-88704789999997122011156131478870-887 Q gi|254780182|r 73 KCARISGEVMGK----Y-HPHGNAAIYDALARMAQDWSLRLLLIEGQGNF-GSV 120 (910) Q Consensus 73 K~a~ivg~v~gk----y-HPHGd~siy~a~v~maq~~~~r~plidg~Gnf-Gs~ 120 (910) ..+-.|+|+|.. . .=--++++++|+-.|.+.--...|.+|..|.+ |-+ T Consensus 21 ~~~t~V~dim~~~~rdvvtv~~~~tv~eAi~~m~~~~~~~l~Vvd~~~~~~Gii 74 (165) T 3fhm_A 21 GMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIF 74 (165) T ss_dssp SSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEE T ss_pred CHHCCHHHHHCCCCCCCEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCEEEEE T ss_conf 001328898358999748999929699999999974984999994898199997 No 107 >3nfi_A DNA-directed RNA polymerase I subunit RPA49; winged helix, transcription, DNA binding, DN protein; HET: MSE PE4; 1.90A {Saccharomyces cerevisiae} PDB: 3nfh_A Probab=20.10 E-value=22 Score=11.54 Aligned_cols=14 Identities=14% Similarity=0.183 Sum_probs=7.9 Q ss_pred EEHHHHCCCCCCHH Q ss_conf 10133178985478 Q gi|254780182|r 183 AVGMATNIPTHNLG 196 (910) Q Consensus 183 AvGmaTnippHNl~ 196 (910) +++-+.+|||||+. T Consensus 15 ~~~~~rpiPp~n~~ 28 (237) T 3nfi_A 15 ITSNDRPTPLANID 28 (237) T ss_dssp ----CCSSCCCCTT T ss_pred HHHCCCCCCCCCCC T ss_conf 76116899989999 No 108 >3fvh_A Serine/threonine-protein kinase PLK1; POLO like kinas 1, POLO box domain, phosphopeptide binding domain, ATP-binding, cell cycle; HET: TPO; 1.58A {Homo sapiens} PDB: 1q4k_B* 2ogq_A 2ojs_A* 2ojx_A 3bzi_A* 3hik_A* 1q4o_A* 1umw_A* 3hih_A 3c5l_A* Probab=20.04 E-value=24 Score=11.28 Aligned_cols=28 Identities=14% Similarity=0.065 Sum_probs=14.0 Q ss_pred EEECCCCEEEEEECCCCEEEEECCCCCC Q ss_conf 3323777399995489399982000432 Q gi|254780182|r 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 (910) Q Consensus 581 ~~~~t~d~LLfFTs~Gkvy~l~v~~IP~ 608 (910) +.......+-++...|...+....+.|. T Consensus 77 il~~~~~~v~Y~~~~~~~~~~t~~~~P~ 104 (237) T 3fvh_A 77 ILYNDGDSLQYIERDGTESYLTVSSHPN 104 (237) T ss_dssp EECTTSSEEEEECTTCCEEEEESSSCCG T ss_pred EECCCCCEEEEECCCCCEEEEECCCCCH T ss_conf 8858997699987899589899002997 Done!